AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054931

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054931.t1 MTR_7g035075 100.000 89 0 0 1 89 1 89 3.24e-62 187
MS.gene054931.t1 MTR_6g006030 94.382 89 5 0 1 89 1 89 9.37e-59 179
MS.gene054931.t1 MTR_1g110460 72.727 88 23 1 3 89 14 101 4.26e-43 142
MS.gene054931.t1 MTR_1g086510 75.000 76 19 0 14 89 21 96 2.44e-39 131
MS.gene054931.t1 MTR_1g086530 72.368 76 21 0 14 89 33 108 1.40e-38 129
MS.gene054931.t1 MTR_2g033170 80.488 82 16 0 8 89 18 99 3.31e-37 127
MS.gene054931.t1 MTR_4g123040 77.108 83 19 0 7 89 17 99 1.97e-35 122
MS.gene054931.t1 MTR_1g045610 69.333 75 23 0 15 89 22 96 3.13e-35 120
MS.gene054931.t1 MTR_1g073170 65.333 75 26 0 15 89 21 95 4.32e-33 115
MS.gene054931.t1 MTR_7g117730 64.474 76 27 0 14 89 12 87 1.22e-30 108
MS.gene054931.t1 MTR_8g027345 64.474 76 27 0 14 89 12 87 3.57e-30 108
MS.gene054931.t1 MTR_4g121460 65.789 76 26 0 14 89 12 87 4.36e-30 108
MS.gene054931.t1 MTR_2g089620 63.158 76 28 0 14 89 12 87 1.29e-29 107
MS.gene054931.t1 MTR_2g099740 56.180 89 37 1 1 89 1 87 1.38e-29 108
MS.gene054931.t1 MTR_8g095390 59.551 89 34 1 1 89 1 87 2.28e-29 106
MS.gene054931.t1 MTR_8g031360 63.636 77 27 1 14 89 13 89 4.42e-29 105
MS.gene054931.t1 MTR_4g478180 63.158 76 28 0 14 89 13 88 4.48e-29 106
MS.gene054931.t1 MTR_4g073420 67.568 74 24 0 16 89 14 87 7.47e-29 104
MS.gene054931.t1 MTR_5g029840 63.158 76 28 0 14 89 12 87 8.43e-29 105
MS.gene054931.t1 MTR_7g076740 64.935 77 26 1 14 89 12 88 8.58e-29 104
MS.gene054931.t1 MTR_3g052430 57.143 77 33 0 13 89 40 116 1.09e-28 107
MS.gene054931.t1 MTR_1g043080 59.211 76 31 0 14 89 12 87 1.12e-28 103
MS.gene054931.t1 MTR_3g097450 58.427 89 35 1 1 89 1 87 1.12e-28 104
MS.gene054931.t1 MTR_1g076150 60.526 76 30 0 14 89 12 87 1.66e-28 103
MS.gene054931.t1 MTR_2g096380 54.545 77 35 0 13 89 5 81 2.19e-28 102
MS.gene054931.t1 MTR_3g052450 54.430 79 36 0 11 89 37 115 2.74e-28 106
MS.gene054931.t1 MTR_1g085040 56.180 89 37 1 1 89 1 87 2.97e-28 104
MS.gene054931.t1 MTR_5g079670 55.172 87 37 1 3 89 2 86 4.72e-28 100
MS.gene054931.t1 MTR_4g063100 56.000 75 33 0 15 89 8 82 4.97e-28 102
MS.gene054931.t1 MTR_7g096930 60.526 76 30 0 14 89 12 87 6.12e-28 102
MS.gene054931.t1 MTR_5g007370 57.317 82 35 0 8 89 6 87 6.21e-28 102
MS.gene054931.t1 MTR_5g010020 55.056 89 38 1 1 89 1 87 6.39e-28 103
MS.gene054931.t1 MTR_8g098860 53.933 89 39 1 1 89 1 87 6.80e-28 102
MS.gene054931.t1 MTR_2g011660 53.933 89 40 1 1 89 1 88 7.33e-28 103
MS.gene054931.t1 MTR_4g125520 61.842 76 29 0 14 89 12 87 8.77e-28 102
MS.gene054931.t1 MTR_7g011170 59.211 76 31 0 14 89 12 87 1.43e-27 101
MS.gene054931.t1 MTR_1g100653 59.211 76 31 0 14 89 12 87 1.58e-27 101
MS.gene054931.t1 MTR_1g043050 57.895 76 32 0 14 89 12 87 1.59e-27 100
MS.gene054931.t1 MTR_2g034790 61.842 76 29 0 14 89 12 87 1.91e-27 102
MS.gene054931.t1 MTR_4g485530 59.740 77 31 0 13 89 11 87 2.10e-27 98.6
MS.gene054931.t1 MTR_7g115650 57.895 76 32 0 14 89 12 87 3.40e-27 98.6
MS.gene054931.t1 MTR_8g042410 59.211 76 31 0 14 89 37 112 3.92e-27 103
MS.gene054931.t1 MTR_7g110830 53.933 89 39 1 1 89 1 87 4.19e-27 101
MS.gene054931.t1 MTR_7g111290 55.056 89 38 1 1 89 1 87 5.51e-27 101
MS.gene054931.t1 MTR_1g021230 60.526 76 30 0 14 89 57 132 6.24e-27 102
MS.gene054931.t1 MTR_4g091490 59.211 76 31 0 14 89 13 88 6.31e-27 100
MS.gene054931.t1 MTR_3g083540 59.211 76 31 0 14 89 41 116 6.37e-27 100
MS.gene054931.t1 MTR_7g087130 56.579 76 33 0 14 89 12 87 6.71e-27 100
MS.gene054931.t1 MTR_4g065017 56.579 76 33 0 14 89 17 92 1.12e-26 99.8
MS.gene054931.t1 MTR_3g011610 53.947 76 35 0 14 89 37 112 1.64e-26 101
MS.gene054931.t1 MTR_4g102380 57.895 76 32 0 14 89 12 87 1.87e-26 98.2
MS.gene054931.t1 MTR_5g007300 55.263 76 34 0 14 89 64 139 2.31e-26 94.7
MS.gene054931.t1 MTR_1g085640 52.809 89 40 1 1 89 1 87 2.31e-26 99.8
MS.gene054931.t1 MTR_6g012690 57.895 76 32 0 14 89 12 87 2.43e-26 99.4
MS.gene054931.t1 MTR_6g012180 56.579 76 33 0 14 89 12 87 2.84e-26 98.6
MS.gene054931.t1 MTR_0008s0470 60.526 76 30 0 14 89 13 88 3.73e-26 97.8
MS.gene054931.t1 MTR_3g074520 56.579 76 33 0 14 89 12 87 4.44e-26 98.6
MS.gene054931.t1 MTR_0140s0030 55.263 76 34 0 14 89 13 88 5.14e-26 98.2
MS.gene054931.t1 MTR_0489s0020 55.263 76 34 0 14 89 13 88 5.14e-26 98.2
MS.gene054931.t1 MTR_0008s0390 60.526 76 30 0 14 89 13 88 5.30e-26 97.1
MS.gene054931.t1 MTR_3g039990 56.579 76 33 0 14 89 13 88 5.81e-26 97.8
MS.gene054931.t1 MTR_1g062940 55.844 77 34 0 13 89 5 81 7.00e-26 95.5
MS.gene054931.t1 MTR_8g017540 51.685 89 41 1 1 89 47 133 8.32e-26 98.2
MS.gene054931.t1 MTR_2g067420 54.762 84 35 1 6 89 9 89 8.44e-26 97.4
MS.gene054931.t1 MTR_8g017440 51.685 89 41 1 1 89 1 87 9.00e-26 97.4
MS.gene054931.t1 MTR_8g017500 51.685 89 41 1 1 89 1 87 1.02e-25 97.4
MS.gene054931.t1 MTR_7g010210 55.263 76 34 0 14 89 12 87 1.06e-25 96.3
MS.gene054931.t1 MTR_7g010210 55.263 76 34 0 14 89 12 87 1.15e-25 97.1
MS.gene054931.t1 MTR_8g020490 55.844 77 34 0 13 89 7 83 1.50e-25 95.5
MS.gene054931.t1 MTR_4g082290 57.895 76 32 0 14 89 12 87 1.65e-25 97.8
MS.gene054931.t1 MTR_0251s0050 59.211 76 31 0 14 89 13 88 1.87e-25 95.5
MS.gene054931.t1 MTR_2g064160 53.571 84 37 1 6 89 5 86 1.88e-25 96.3
MS.gene054931.t1 MTR_1g112760 54.023 87 38 1 3 89 4 88 1.89e-25 94.7
MS.gene054931.t1 MTR_3g028740 53.947 76 35 0 14 89 22 97 2.28e-25 96.7
MS.gene054931.t1 MTR_2g097910 53.947 76 35 0 14 89 20 95 2.30e-25 96.3
MS.gene054931.t1 MTR_4g082230 57.895 76 32 0 14 89 12 87 2.64e-25 97.1
MS.gene054931.t1 MTR_3g077110 53.933 89 39 1 1 89 1 87 3.25e-25 96.3
MS.gene054931.t1 MTR_2g089420 59.211 76 31 0 14 89 11 86 4.10e-25 97.1
MS.gene054931.t1 MTR_5g078140 55.263 76 34 0 14 89 12 87 4.46e-25 95.5
MS.gene054931.t1 MTR_2g089450 59.211 76 31 0 14 89 12 87 5.05e-25 94.0
MS.gene054931.t1 MTR_3g065440 55.263 76 34 0 14 89 12 87 6.42e-25 94.7
MS.gene054931.t1 MTR_6g009430 55.263 76 34 0 13 88 11 86 7.21e-25 95.1
MS.gene054931.t1 MTR_4g105130 51.685 89 41 1 1 89 1 87 7.52e-25 95.5
MS.gene054931.t1 MTR_1g017000 54.545 77 34 1 14 89 12 88 7.94e-25 93.6
MS.gene054931.t1 MTR_0008s0280 55.263 76 34 0 14 89 12 87 2.24e-24 92.0
MS.gene054931.t1 MTR_0063s0090 55.263 76 34 0 14 89 12 87 2.74e-24 91.7
MS.gene054931.t1 MTR_5g042030 55.263 76 34 0 14 89 7 82 4.25e-24 92.4
MS.gene054931.t1 MTR_1g100667 53.846 78 36 0 12 89 11 88 7.38e-24 91.3
MS.gene054931.t1 MTR_5g062790 50.000 82 41 0 7 88 2 83 8.68e-24 91.7
MS.gene054931.t1 MTR_4g100720 55.263 76 34 0 14 89 13 88 1.18e-23 88.6
MS.gene054931.t1 MTR_2g088170 56.322 87 34 1 7 89 18 104 3.21e-23 91.7
MS.gene054931.t1 MTR_8g017340 51.111 90 41 2 1 89 1 88 3.57e-23 91.7
MS.gene054931.t1 MTR_8g017350 51.111 90 41 2 1 89 1 88 3.88e-23 92.0
MS.gene054931.t1 MTR_3g461490 51.948 77 37 0 13 89 11 87 6.98e-23 89.7
MS.gene054931.t1 MTR_5g088080 50.000 76 38 0 13 88 11 86 1.28e-22 88.2
MS.gene054931.t1 MTR_5g088150 50.000 76 38 0 13 88 11 86 1.28e-22 88.2
MS.gene054931.t1 MTR_5g488210 50.000 76 38 0 13 88 11 86 1.28e-22 88.2
MS.gene054931.t1 MTR_5g488170 50.000 76 38 0 13 88 11 86 1.48e-22 87.4
MS.gene054931.t1 MTR_5g088640 50.000 76 38 0 13 88 11 86 1.57e-22 87.8
MS.gene054931.t1 MTR_1g083630 53.333 75 35 0 14 88 12 86 1.67e-22 90.1
MS.gene054931.t1 MTR_8g017390 54.545 77 34 1 14 89 12 88 2.42e-22 89.4
MS.gene054931.t1 MTR_7g109320 60.526 76 30 0 14 89 12 87 2.45e-22 88.6
MS.gene054931.t1 MTR_2g095520 54.545 77 34 1 13 88 11 87 3.03e-22 87.8
MS.gene054931.t1 MTR_6g055910 51.250 80 39 0 10 89 10 89 3.96e-22 87.0
MS.gene054931.t1 MTR_4g057635 53.247 77 35 1 14 89 12 88 2.08e-21 85.9
MS.gene054931.t1 MTR_3g103570 52.564 78 36 1 13 89 11 88 5.40e-21 84.7
MS.gene054931.t1 MTR_5g079120 52.632 76 36 0 14 89 61 136 1.04e-20 83.6
MS.gene054931.t1 MTR_7g102110 51.282 78 37 1 13 89 11 88 1.54e-20 82.8
MS.gene054931.t1 MTR_8g006470 48.052 77 39 1 14 89 10 86 1.84e-20 82.8
MS.gene054931.t1 MTR_4g097570 51.948 77 36 1 13 88 11 87 2.03e-20 82.8
MS.gene054931.t1 MTR_6g090405 53.947 76 34 1 14 88 12 87 2.45e-20 82.0
MS.gene054931.t1 MTR_1g017140 51.948 77 36 1 13 88 11 87 3.37e-20 82.8
MS.gene054931.t1 MTR_8g060940 51.316 76 37 0 14 89 7 82 3.46e-20 81.3
MS.gene054931.t1 MTR_4g128670 51.948 77 36 1 13 88 11 87 3.81e-20 82.4
MS.gene054931.t1 MTR_0197s0010 52.778 72 34 0 18 89 5 76 6.09e-20 80.5
MS.gene054931.t1 MTR_5g014990 50.000 78 38 1 13 89 11 88 6.39e-20 81.6
MS.gene054931.t1 MTR_0247s0040 51.316 76 37 0 14 89 7 82 2.11e-19 77.8
MS.gene054931.t1 MTR_5g088610 43.373 83 47 0 6 88 1 83 2.14e-19 80.5
MS.gene054931.t1 MTR_4g029540 44.156 77 42 1 14 89 10 86 5.02e-19 79.0
MS.gene054931.t1 MTR_0193s0090 50.000 76 38 0 14 89 7 82 5.87e-19 77.4
MS.gene054931.t1 MTR_4g097570 51.282 78 36 2 13 88 11 88 7.36e-19 78.6
MS.gene054931.t1 MTR_5g079290 48.684 76 39 0 14 89 17 92 9.08e-19 77.8
MS.gene054931.t1 MTR_5g078910 47.368 76 40 0 14 89 7 82 1.96e-18 77.4
MS.gene054931.t1 MTR_5g078930 50.667 75 37 0 15 89 10 84 2.51e-18 75.9
MS.gene054931.t1 MTR_5g079220 48.684 76 39 0 14 89 21 96 2.96e-18 76.6
MS.gene054931.t1 MTR_5g078800 48.684 76 39 0 14 89 7 82 3.19e-18 76.3
MS.gene054931.t1 MTR_7g017260 47.436 78 39 1 14 89 25 102 5.46e-18 75.9
MS.gene054931.t1 MTR_4g063100 65.909 44 15 0 46 89 10 53 7.38e-18 74.7
MS.gene054931.t1 MTR_0001s0360 48.684 76 39 0 14 89 7 82 7.50e-18 75.1
MS.gene054931.t1 MTR_5g078950 47.368 76 40 0 14 89 7 82 8.31e-18 75.5
MS.gene054931.t1 MTR_5g078860 48.684 76 39 0 14 89 7 82 2.20e-17 74.7
MS.gene054931.t1 MTR_6g015455 50.649 77 37 1 13 89 2 77 1.40e-16 73.2
MS.gene054931.t1 MTR_5g016510 48.649 74 37 1 16 89 5 77 4.16e-16 71.2
MS.gene054931.t1 MTR_2g096380 63.636 44 16 0 46 89 19 62 5.62e-16 69.7
MS.gene054931.t1 MTR_0023s0210 43.662 71 40 0 14 84 7 77 6.88e-16 66.2
MS.gene054931.t1 MTR_1g057980 41.250 80 46 1 10 89 74 152 2.18e-15 69.3
MS.gene054931.t1 MTR_1g085880 47.692 65 33 1 7 70 4 68 4.64e-15 67.0
MS.gene054931.t1 MTR_4g019370 45.946 74 39 1 16 89 38 110 1.14e-14 67.4
MS.gene054931.t1 MTR_4g094982 47.297 74 38 1 16 89 5 77 1.16e-14 67.0
MS.gene054931.t1 MTR_5g049190 38.961 77 46 1 13 89 16 91 1.51e-14 66.2
MS.gene054931.t1 MTR_1g085770 47.692 65 33 1 7 70 4 68 1.66e-14 67.0
MS.gene054931.t1 MTR_4g088015 41.250 80 46 1 10 89 215 293 2.13e-14 67.0
MS.gene054931.t1 MTR_7g061330 41.772 79 45 1 11 89 108 185 2.24e-14 67.0
MS.gene054931.t1 MTR_7g461410 41.772 79 45 1 11 89 108 185 2.24e-14 67.0
MS.gene054931.t1 MTR_7g061330 41.772 79 45 1 11 89 72 149 2.53e-14 66.6
MS.gene054931.t1 MTR_6g027340 43.836 73 40 1 16 88 16 87 2.55e-14 65.1
MS.gene054931.t1 MTR_3g101290 43.243 74 41 1 16 89 37 109 9.02e-14 63.9
MS.gene054931.t1 MTR_7g111290 63.636 44 16 0 46 89 2 45 1.14e-13 64.7
MS.gene054931.t1 MTR_7g061550 42.466 73 40 1 19 89 10 82 1.32e-13 64.7
MS.gene054931.t1 MTR_5g070020 43.243 74 41 1 16 89 122 194 1.39e-13 64.3
MS.gene054931.t1 MTR_7g451170 43.210 81 43 2 10 89 185 263 2.28e-13 63.9
MS.gene054931.t1 MTR_1g026870 37.975 79 48 1 11 89 80 157 2.39e-13 63.9
MS.gene054931.t1 MTR_3g077650 39.189 74 44 1 16 89 181 253 3.17e-13 63.5
MS.gene054931.t1 MTR_3g110028 36.709 79 49 1 11 89 80 157 3.63e-13 63.5
MS.gene054931.t1 MTR_4g128190 37.349 83 39 1 6 88 3 72 4.22e-13 62.4
MS.gene054931.t1 MTR_6g027360 39.506 81 48 1 8 88 70 149 6.11e-13 62.4
MS.gene054931.t1 MTR_4g105660 41.558 77 42 2 14 89 178 252 1.75e-12 61.6
MS.gene054931.t1 MTR_7g035350 37.079 89 55 1 1 89 210 297 2.21e-12 61.2
MS.gene054931.t1 MTR_7g037260 41.250 80 46 1 10 89 139 217 4.42e-12 60.5
MS.gene054931.t1 MTR_3g463400 40.541 74 43 1 16 89 133 205 4.78e-12 60.1
MS.gene054931.t1 MTR_5g082910 40.000 80 47 1 10 89 13 91 6.99e-12 59.3
MS.gene054931.t1 MTR_3g045430 33.721 86 57 0 4 89 3 88 7.52e-12 59.3
MS.gene054931.t1 MTR_8g468380 40.845 71 41 1 19 89 25 94 3.22e-11 57.8
MS.gene054931.t1 MTR_6g055910 55.814 43 19 0 47 89 18 60 3.45e-11 57.4
MS.gene054931.t1 MTR_5g041570 37.209 86 53 1 4 89 122 206 4.32e-11 57.4
MS.gene054931.t1 MTR_7g450950 40.541 74 43 1 16 89 157 229 7.74e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054931.t1 AT5G40350 85.870 92 10 1 1 89 1 92 5.51e-52 162
MS.gene054931.t1 AT3G27810 92.405 79 6 0 11 89 17 95 3.57e-51 160
MS.gene054931.t1 AT3G01530 82.500 80 14 0 10 89 21 100 1.03e-45 145
MS.gene054931.t1 AT1G25340 68.182 88 27 1 3 89 6 93 6.61e-41 135
MS.gene054931.t1 AT1G68320 73.418 79 21 0 11 89 16 94 1.33e-40 135
MS.gene054931.t1 AT2G47190 71.250 80 23 0 10 89 16 95 3.35e-39 131
MS.gene054931.t1 AT1G48000 68.831 77 24 0 13 89 31 107 5.21e-38 127
MS.gene054931.t1 AT3G24310 72.000 75 21 0 15 89 19 93 6.69e-36 122
MS.gene054931.t1 AT1G25340 63.636 88 26 2 3 89 6 88 1.53e-35 122
MS.gene054931.t1 AT5G49620 81.250 80 15 0 10 89 22 101 1.58e-35 122
MS.gene054931.t1 AT5G49620 81.250 80 15 0 10 89 22 101 1.61e-35 122
MS.gene054931.t1 AT4G13480 72.000 75 21 0 15 89 7 81 1.76e-35 121
MS.gene054931.t1 AT1G25340 63.636 88 26 2 3 89 6 88 2.39e-35 122
MS.gene054931.t1 AT3G30210 64.000 75 27 0 15 89 28 102 4.76e-33 115
MS.gene054931.t1 AT3G06490 76.623 77 18 0 13 89 18 94 8.48e-33 115
MS.gene054931.t1 AT5G59780 57.143 77 33 0 13 89 7 83 3.24e-30 107
MS.gene054931.t1 AT3G46130 56.250 80 35 0 10 89 5 84 3.53e-30 107
MS.gene054931.t1 AT2G47460 64.474 76 27 0 14 89 12 87 4.37e-30 109
MS.gene054931.t1 AT1G22640 64.865 74 26 0 16 89 14 87 4.51e-30 107
MS.gene054931.t1 AT5G14750 56.667 90 36 1 3 89 2 91 5.01e-30 105
MS.gene054931.t1 AT4G09460 66.216 74 25 0 16 89 14 87 7.05e-30 106
MS.gene054931.t1 AT2G31180 63.158 76 28 0 14 89 12 87 1.21e-29 105
MS.gene054931.t1 AT1G35515 63.158 76 28 0 14 89 12 87 1.23e-29 105
MS.gene054931.t1 AT1G57560 57.303 89 36 1 1 89 1 87 1.94e-29 105
MS.gene054931.t1 AT1G57560 57.303 89 36 1 1 89 1 87 2.37e-29 106
MS.gene054931.t1 AT4G34990 67.568 74 24 0 16 89 14 87 2.76e-29 105
MS.gene054931.t1 AT3G02940 63.158 76 28 0 14 89 12 87 2.95e-29 106
MS.gene054931.t1 AT3G13890 55.056 89 38 1 1 89 1 87 3.91e-29 106
MS.gene054931.t1 AT3G02940 63.158 76 28 0 14 89 12 87 4.11e-29 106
MS.gene054931.t1 AT3G02940 63.158 76 28 0 14 89 12 87 4.11e-29 106
MS.gene054931.t1 AT1G06180 63.158 76 28 0 14 89 12 87 4.69e-29 104
MS.gene054931.t1 AT1G09540 56.180 89 37 1 1 89 1 87 5.26e-29 106
MS.gene054931.t1 AT5G40330 57.500 80 34 0 10 89 8 87 7.80e-29 103
MS.gene054931.t1 AT3G62610 62.667 75 28 0 14 88 12 86 8.54e-29 105
MS.gene054931.t1 AT4G38620 66.216 74 25 0 16 89 14 87 8.96e-29 104
MS.gene054931.t1 AT5G16770 61.842 76 29 0 14 89 12 87 9.27e-29 105
MS.gene054931.t1 AT5G16770 61.842 76 29 0 14 89 12 87 9.27e-29 105
MS.gene054931.t1 AT5G16770 61.842 76 29 0 14 89 12 87 1.27e-28 105
MS.gene054931.t1 AT5G16770 61.842 76 29 0 14 89 12 87 1.27e-28 105
MS.gene054931.t1 AT5G26660 56.180 89 37 1 1 89 1 87 2.02e-28 104
MS.gene054931.t1 AT2G16720 61.842 76 29 0 14 89 12 87 2.07e-28 103
MS.gene054931.t1 AT3G23250 59.211 76 31 0 14 89 12 87 2.29e-28 103
MS.gene054931.t1 AT2G32460 57.895 76 32 0 14 89 6 81 3.56e-28 105
MS.gene054931.t1 AT2G32460 57.895 76 32 0 14 89 18 93 3.60e-28 105
MS.gene054931.t1 AT3G27920 55.000 80 36 0 10 89 10 89 6.92e-28 100
MS.gene054931.t1 AT4G28110 61.842 76 29 0 14 89 12 87 6.98e-28 102
MS.gene054931.t1 AT4G21440 59.211 76 31 0 14 89 12 87 7.73e-28 103
MS.gene054931.t1 AT1G16490 59.211 76 31 0 14 89 14 89 1.05e-27 101
MS.gene054931.t1 AT5G10280 54.321 81 37 0 9 89 7 87 1.16e-27 102
MS.gene054931.t1 AT5G35550 53.933 89 41 0 1 89 1 89 1.24e-27 100
MS.gene054931.t1 AT3G13540 60.526 76 30 0 14 89 23 98 1.54e-27 100
MS.gene054931.t1 AT5G60890 61.842 76 29 0 14 89 12 87 1.75e-27 101
MS.gene054931.t1 AT3G01140 60.526 76 30 0 14 89 12 87 1.95e-27 102
MS.gene054931.t1 AT4G01680 53.933 89 39 1 1 89 1 87 2.59e-27 99.8
MS.gene054931.t1 AT5G07700 59.211 76 31 0 14 89 12 87 2.86e-27 101
MS.gene054931.t1 AT5G07700 59.211 76 31 0 14 89 12 87 2.86e-27 101
MS.gene054931.t1 AT5G07690 53.933 89 39 1 1 89 1 87 2.93e-27 101
MS.gene054931.t1 AT4G05100 60.526 76 30 0 14 89 13 88 3.00e-27 101
MS.gene054931.t1 AT3G01140 60.526 76 30 0 14 89 55 130 3.28e-27 102
MS.gene054931.t1 AT5G61420 52.809 89 40 1 1 89 1 87 3.45e-27 101
MS.gene054931.t1 AT1G08810 57.895 76 32 0 14 89 12 87 3.45e-27 100
MS.gene054931.t1 AT5G54230 60.526 76 30 0 14 89 12 87 3.47e-27 100
MS.gene054931.t1 AT1G63910 53.933 89 39 1 1 89 1 87 3.51e-27 101
MS.gene054931.t1 AT3G11440 56.579 76 33 0 14 89 41 116 3.55e-27 102
MS.gene054931.t1 AT4G22680 59.211 76 31 0 14 89 12 87 3.75e-27 99.8
MS.gene054931.t1 AT5G65230 57.317 82 35 0 8 89 6 87 3.80e-27 100
MS.gene054931.t1 AT1G79180 57.895 76 32 0 14 89 14 89 4.60e-27 100
MS.gene054931.t1 AT5G15310 59.211 76 31 0 14 89 12 87 4.75e-27 99.4
MS.gene054931.t1 AT1G74430 61.842 76 29 0 14 89 12 87 6.37e-27 99.4
MS.gene054931.t1 AT3G11440 56.579 76 33 0 14 89 41 116 8.02e-27 102
MS.gene054931.t1 AT3G11440 56.579 76 33 0 14 89 41 116 8.02e-27 102
MS.gene054931.t1 AT3G11440 56.579 76 33 0 14 89 41 116 8.02e-27 102
MS.gene054931.t1 AT3G61250 57.895 76 32 0 14 89 12 87 8.86e-27 99.8
MS.gene054931.t1 AT5G15310 59.211 76 31 0 14 89 12 87 9.60e-27 100
MS.gene054931.t1 AT5G15310 59.211 76 31 0 14 89 12 87 1.13e-26 99.8
MS.gene054931.t1 AT4G01680 53.933 89 39 1 1 89 1 87 1.19e-26 99.8
MS.gene054931.t1 AT5G52600 55.263 76 34 0 14 89 12 87 1.21e-26 97.1
MS.gene054931.t1 AT3G13890 50.000 98 38 2 1 89 1 96 1.72e-26 100
MS.gene054931.t1 AT5G06100 56.579 76 33 0 14 89 32 107 1.83e-26 100
MS.gene054931.t1 AT1G56160 57.895 76 32 0 14 89 14 89 2.40e-26 98.6
MS.gene054931.t1 AT4G12350 59.211 76 31 0 14 89 12 87 2.62e-26 98.2
MS.gene054931.t1 AT1G74650 57.143 77 33 0 13 89 11 87 2.90e-26 99.0
MS.gene054931.t1 AT4G26930 56.579 76 33 0 14 89 19 94 3.04e-26 99.8
MS.gene054931.t1 AT3G47600 56.579 76 33 0 14 89 12 87 3.08e-26 98.6
MS.gene054931.t1 AT1G74080 59.211 76 31 0 14 89 12 87 3.08e-26 98.6
MS.gene054931.t1 AT5G06100 56.579 76 33 0 14 89 32 107 3.21e-26 100
MS.gene054931.t1 AT5G06100 56.579 76 33 0 14 89 32 107 3.21e-26 100
MS.gene054931.t1 AT5G06100 56.579 76 33 0 14 89 32 107 3.21e-26 100
MS.gene054931.t1 AT5G06100 56.579 76 33 0 14 89 32 107 3.21e-26 100
MS.gene054931.t1 AT5G12870 51.190 84 41 0 6 89 10 93 3.53e-26 97.8
MS.gene054931.t1 AT1G34670 57.895 76 32 0 14 89 12 87 4.15e-26 99.0
MS.gene054931.t1 AT5G62470 56.579 76 33 0 14 89 12 87 4.61e-26 98.6
MS.gene054931.t1 AT5G49330 59.211 76 31 0 14 89 12 87 5.01e-26 98.2
MS.gene054931.t1 AT5G55020 55.263 76 34 0 14 89 26 101 5.05e-26 99.8
MS.gene054931.t1 AT1G18570 59.211 76 31 0 14 89 13 88 6.23e-26 98.2
MS.gene054931.t1 AT3G27810 95.349 43 2 0 47 89 4 46 1.69e-25 93.6
MS.gene054931.t1 AT3G28910 55.263 76 34 0 14 89 12 87 1.78e-25 96.7
MS.gene054931.t1 AT3G08500 53.846 78 36 0 12 89 28 105 1.88e-25 96.7
MS.gene054931.t1 AT1G18710 60.526 76 30 0 14 89 12 87 2.22e-25 95.5
MS.gene054931.t1 AT4G17785 55.056 89 39 1 1 89 1 88 2.52e-25 96.7
MS.gene054931.t1 AT4G17785 55.056 89 39 1 1 89 1 88 2.86e-25 96.7
MS.gene054931.t1 AT2G26960 47.253 91 44 1 3 89 5 95 3.15e-25 97.1
MS.gene054931.t1 AT5G40350 95.349 43 2 0 47 89 5 47 7.46e-25 91.7
MS.gene054931.t1 AT5G14340 55.263 76 34 0 14 89 24 99 1.14e-24 93.6
MS.gene054931.t1 AT3G12720 55.263 76 34 0 14 89 22 97 1.14e-24 94.4
MS.gene054931.t1 AT5G16600 55.263 76 34 0 14 89 12 87 2.16e-24 94.0
MS.gene054931.t1 AT3G53200 52.500 80 38 0 10 89 5 84 2.20e-24 92.0
MS.gene054931.t1 AT1G66230 52.632 76 36 0 14 89 12 87 3.20e-24 92.4
MS.gene054931.t1 AT5G62470 56.579 76 32 1 14 89 12 86 4.22e-24 93.2
MS.gene054931.t1 AT3G12820 53.571 84 36 1 6 89 9 89 1.33e-23 90.1
MS.gene054931.t1 AT4G01680 47.525 101 39 2 1 89 1 99 2.62e-23 91.3
MS.gene054931.t1 AT5G62320 51.807 83 33 1 14 89 13 95 1.48e-22 87.4
MS.gene054931.t1 AT3G28470 51.948 77 37 0 13 89 11 87 2.93e-22 87.8
MS.gene054931.t1 AT4G37780 53.247 77 35 1 14 89 12 88 3.02e-22 87.8
MS.gene054931.t1 AT5G56110 50.649 77 38 0 13 89 11 87 5.05e-22 87.4
MS.gene054931.t1 AT2G36890 52.564 78 36 1 13 89 11 88 9.94e-21 83.6
MS.gene054931.t1 AT2G36890 52.564 78 36 1 13 89 52 129 1.05e-20 84.0
MS.gene054931.t1 AT1G79180 39.450 109 33 1 14 89 14 122 1.31e-20 83.6
MS.gene054931.t1 AT3G49690 51.948 77 36 1 13 88 11 87 1.88e-20 83.2
MS.gene054931.t1 AT5G57620 50.649 77 37 1 13 88 11 87 2.09e-20 83.2
MS.gene054931.t1 AT5G23000 51.316 76 36 1 14 88 12 87 5.99e-20 82.0
MS.gene054931.t1 AT1G66370 48.684 76 39 0 14 89 8 83 6.27e-20 80.5
MS.gene054931.t1 AT5G65790 50.000 78 38 1 13 89 11 88 6.38e-20 82.4
MS.gene054931.t1 AT4G25560 48.000 75 39 0 15 89 11 85 7.74e-20 80.9
MS.gene054931.t1 AT3G60460 42.683 82 46 1 9 89 6 87 7.94e-20 81.3
MS.gene054931.t1 AT3G48920 45.333 75 41 0 15 89 19 93 9.02e-20 80.5
MS.gene054931.t1 AT5G52260 49.333 75 38 0 15 89 13 87 7.10e-19 78.2
MS.gene054931.t1 AT1G66380 52.381 63 30 0 14 76 8 70 1.72e-18 73.9
MS.gene054931.t1 AT1G66380 52.381 63 30 0 14 76 8 70 4.75e-18 73.6
MS.gene054931.t1 AT3G46130 66.667 45 15 0 45 89 8 52 8.87e-18 74.7
MS.gene054931.t1 AT5G59780 69.767 43 13 0 47 89 20 62 2.39e-17 73.2
MS.gene054931.t1 AT3G46130 69.767 43 13 0 47 89 20 62 2.69e-17 73.6
MS.gene054931.t1 AT1G56650 52.381 63 30 0 14 76 8 70 3.39e-17 73.6
MS.gene054931.t1 AT1G66390 52.381 63 30 0 14 76 8 70 3.30e-16 70.9
MS.gene054931.t1 AT2G26950 40.541 74 44 0 16 89 18 91 5.26e-16 71.2
MS.gene054931.t1 AT2G23290 44.578 83 45 1 7 89 4 85 2.40e-15 69.3
MS.gene054931.t1 AT3G27785 39.286 84 50 1 6 89 179 261 2.83e-15 69.3
MS.gene054931.t1 AT3G53200 62.791 43 16 0 47 89 9 51 1.24e-14 65.9
MS.gene054931.t1 AT5G26660 67.442 43 14 0 47 89 14 56 1.29e-14 67.4
MS.gene054931.t1 AT5G11510 40.506 79 46 1 11 89 76 153 1.79e-14 67.4
MS.gene054931.t1 AT5G11510 40.506 79 46 1 11 89 76 153 1.81e-14 67.4
MS.gene054931.t1 AT5G11510 40.506 79 46 1 11 89 76 153 1.99e-14 67.0
MS.gene054931.t1 AT5G11510 40.506 79 46 1 11 89 76 153 1.99e-14 67.0
MS.gene054931.t1 AT5G11510 40.506 79 46 1 11 89 76 153 1.99e-14 67.0
MS.gene054931.t1 AT4G37260 45.946 74 39 1 16 89 13 85 2.06e-14 66.6
MS.gene054931.t1 AT5G35550 64.583 48 17 0 42 89 45 92 3.46e-14 65.5
MS.gene054931.t1 AT5G11050 40.260 77 45 1 13 89 102 177 4.42e-14 66.2
MS.gene054931.t1 AT3G50060 42.857 77 43 1 13 89 3 78 4.90e-14 65.5
MS.gene054931.t1 AT3G09370 39.241 79 47 1 11 89 130 207 8.03e-14 65.5
MS.gene054931.t1 AT3G09370 39.241 79 47 1 11 89 138 215 8.04e-14 65.5
MS.gene054931.t1 AT3G09370 39.241 79 47 1 11 89 125 202 8.34e-14 65.5
MS.gene054931.t1 AT4G18770 41.892 74 42 1 16 89 217 289 9.89e-14 65.1
MS.gene054931.t1 AT5G02320 39.241 79 47 1 11 89 122 199 1.81e-13 64.3
MS.gene054931.t1 AT5G02320 39.241 79 47 1 11 89 122 199 1.81e-13 64.3
MS.gene054931.t1 AT5G02320 39.241 79 47 1 11 89 62 139 2.00e-13 64.3
MS.gene054931.t1 AT5G58850 41.892 74 42 1 16 89 105 177 2.14e-13 64.3
MS.gene054931.t1 AT4G32730 36.709 79 49 1 11 89 82 159 5.31e-13 63.2
MS.gene054931.t1 AT4G32730 36.709 79 49 1 11 89 82 159 5.64e-13 63.2
MS.gene054931.t1 AT4G32730 36.709 79 49 1 11 89 82 159 5.64e-13 63.2
MS.gene054931.t1 AT4G32730 36.709 79 49 1 11 89 82 159 5.64e-13 63.2
MS.gene054931.t1 AT4G32730 36.709 79 49 1 11 89 82 159 5.64e-13 63.2
MS.gene054931.t1 AT3G55730 44.000 75 39 2 16 89 56 128 8.85e-13 62.4
MS.gene054931.t1 AT1G69560 37.209 86 53 1 4 89 111 195 1.02e-12 62.0
MS.gene054931.t1 AT3G12820 65.000 40 14 0 50 89 2 41 1.14e-12 60.5
MS.gene054931.t1 AT1G69560 37.209 86 53 1 4 89 95 179 1.31e-12 61.6
MS.gene054931.t1 AT3G09230 44.156 77 42 1 13 89 52 127 1.63e-12 61.6
MS.gene054931.t1 AT5G14750 54.717 53 19 1 42 89 5 57 1.86e-12 59.7
MS.gene054931.t1 AT2G37630 41.096 73 41 1 19 89 7 79 2.73e-12 60.8
MS.gene054931.t1 AT5G40360 39.474 76 45 1 14 89 156 230 2.75e-12 60.8
MS.gene054931.t1 AT5G67300 42.857 77 43 1 13 89 3 78 2.81e-12 60.8
MS.gene054931.t1 AT3G47600 58.140 43 18 0 47 89 39 81 9.15e-12 59.3
MS.gene054931.t1 AT3G29020 37.838 74 45 1 16 89 67 139 2.39e-11 58.2
MS.gene054931.t1 AT3G29020 37.838 74 45 1 16 89 65 137 2.41e-11 57.8

Find 26 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAAGCCTGCAACTCTTTC+CGG 0.204393 7.3:+63042444 None:intergenic
CCAAACACCTTCACCATGAT+TGG 0.346620 7.3:+63042736 None:intergenic
CCAATCATGGTGAAGGTGTT+TGG 0.360993 7.3:-63042736 MS.gene054931:CDS
AACGTACCGGAAAGAGTTGC+AGG 0.368952 7.3:-63042450 MS.gene054931:CDS
TTCATGCTAAGTGGGGAAAC+AGG 0.422675 7.3:-63042348 None:intergenic
ATCAACTATATTGCCAATCA+TGG 0.459614 7.3:-63042749 MS.gene054931:CDS
CCGGAAAGAGTTGCAGGCTT+CGG 0.464657 7.3:-63042444 MS.gene054931:CDS
CATGGTCCCTTTCGTACATC+AGG 0.468269 7.3:+63042797 None:intergenic
ATGATCAAGAGTTGTTCCTC+TGG 0.494070 7.3:+63042376 None:intergenic
CATTGAACTTCATGCTAAGT+GGG 0.494832 7.3:-63042356 MS.gene054931:CDS
ATATTCCCTCGTCTAACATC+AGG 0.503266 7.3:+63042403 None:intergenic
AACTCCTTGGCTAAATCTGC+TGG 0.506754 7.3:-63042713 MS.gene054931:intron
AAGTCTTCTTCCATTGTCCA+TGG 0.510332 7.3:+63042779 None:intergenic
TCATTGAACTTCATGCTAAG+TGG 0.536877 7.3:-63042357 MS.gene054931:CDS
TGAAGGTGTTTGGAACTCCT+TGG 0.569511 7.3:-63042726 MS.gene054931:CDS
CAAGATCCTGATGTACGAAA+GGG 0.574930 7.3:-63042803 MS.gene054931:CDS
GAAAGAGTTGCAGGCTTCGG+TGG 0.580113 7.3:-63042441 MS.gene054931:CDS
TATATTGCCAATCATGGTGA+AGG 0.589500 7.3:-63042743 MS.gene054931:CDS
ACAAGATCCTGATGTACGAA+AGG 0.594892 7.3:-63042804 MS.gene054931:CDS
ATTACCAGCAGATTTAGCCA+AGG 0.612713 7.3:+63042709 None:intergenic
CTTCGACCTGATGTTAGACG+AGG 0.623587 7.3:-63042409 MS.gene054931:CDS
CTGATGTACGAAAGGGACCA+TGG 0.624475 7.3:-63042796 MS.gene054931:CDS
ACGAAAGGGACCATGGACAA+TGG 0.642783 7.3:-63042789 MS.gene054931:CDS
TTCGACCTGATGTTAGACGA+GGG 0.661220 7.3:-63042408 MS.gene054931:CDS
ATTGAACTTCATGCTAAGTG+GGG 0.662589 7.3:-63042355 MS.gene054931:CDS
ACGAGGGAATATTACACCAG+AGG 0.692927 7.3:-63042392 MS.gene054931:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAATAATAATAATAA+AGG - chr7.3:63042538-63042557 MS.gene054931:intron 0.0%
!! CATAAATCATCATAATAATA+TGG - chr7.3:63042685-63042704 MS.gene054931:intron 15.0%
!!! AATATGGTTTCAAACATTTT+AGG - chr7.3:63042701-63042720 MS.gene054931:intron 20.0%
!!! GATTTATGAAACATTGATTA+AGG + chr7.3:63042673-63042692 None:intergenic 20.0%
!!! TTATACACTCATTAGATTTT+AGG + chr7.3:63042613-63042632 None:intergenic 20.0%
ATCAACTATATTGCCAATCA+TGG - chr7.3:63042430-63042449 MS.gene054931:CDS 30.0%
TTAAAAAGAATGACCTAGCT+TGG - chr7.3:63042640-63042659 MS.gene054931:intron 30.0%
!! ATTTTAGGTCTTAAACGTAC+CGG - chr7.3:63042716-63042735 MS.gene054931:CDS 30.0%
ATTGAACTTCATGCTAAGTG+GGG - chr7.3:63042824-63042843 MS.gene054931:CDS 35.0%
CATTGAACTTCATGCTAAGT+GGG - chr7.3:63042823-63042842 MS.gene054931:CDS 35.0%
TATATTGCCAATCATGGTGA+AGG - chr7.3:63042436-63042455 MS.gene054931:CDS 35.0%
TCATTGAACTTCATGCTAAG+TGG - chr7.3:63042822-63042841 MS.gene054931:CDS 35.0%
AAAGAATGACCTAGCTTGGT+AGG - chr7.3:63042644-63042663 MS.gene054931:intron 40.0%
AAGAATGACCTAGCTTGGTA+GGG - chr7.3:63042645-63042664 MS.gene054931:intron 40.0%
AAGTCTTCTTCCATTGTCCA+TGG + chr7.3:63042403-63042422 None:intergenic 40.0%
ACAAGATCCTGATGTACGAA+AGG - chr7.3:63042375-63042394 MS.gene054931:CDS 40.0%
ATATTCCCTCGTCTAACATC+AGG + chr7.3:63042779-63042798 None:intergenic 40.0%
ATGATCAAGAGTTGTTCCTC+TGG + chr7.3:63042806-63042825 None:intergenic 40.0%
ATTACCAGCAGATTTAGCCA+AGG + chr7.3:63042473-63042492 None:intergenic 40.0%
CAAGATCCTGATGTACGAAA+GGG - chr7.3:63042376-63042395 MS.gene054931:CDS 40.0%
!! TCGTGCAAAAGTGCTTTGTA+TGG - chr7.3:63042582-63042601 MS.gene054931:intron 40.0%
AACTCCTTGGCTAAATCTGC+TGG - chr7.3:63042466-63042485 MS.gene054931:intron 45.0%
ACGAGGGAATATTACACCAG+AGG - chr7.3:63042787-63042806 MS.gene054931:CDS 45.0%
CCAAACACCTTCACCATGAT+TGG + chr7.3:63042446-63042465 None:intergenic 45.0%
TTCGACCTGATGTTAGACGA+GGG - chr7.3:63042771-63042790 MS.gene054931:CDS 45.0%
! TTAAGGTACCCTACCAAGCT+AGG + chr7.3:63042656-63042675 None:intergenic 45.0%
!! CCAATCATGGTGAAGGTGTT+TGG - chr7.3:63042443-63042462 MS.gene054931:CDS 45.0%
!! TGAAGGTGTTTGGAACTCCT+TGG - chr7.3:63042453-63042472 MS.gene054931:CDS 45.0%
AACGTACCGGAAAGAGTTGC+AGG - chr7.3:63042729-63042748 MS.gene054931:CDS 50.0%
ACGAAAGGGACCATGGACAA+TGG - chr7.3:63042390-63042409 MS.gene054931:CDS 50.0%
CATGGTCCCTTTCGTACATC+AGG + chr7.3:63042385-63042404 None:intergenic 50.0%
CTGATGTACGAAAGGGACCA+TGG - chr7.3:63042383-63042402 MS.gene054931:CDS 50.0%
CTTCGACCTGATGTTAGACG+AGG - chr7.3:63042770-63042789 MS.gene054931:CDS 50.0%
CCGAAGCCTGCAACTCTTTC+CGG + chr7.3:63042738-63042757 None:intergenic 55.0%
CCGGAAAGAGTTGCAGGCTT+CGG - chr7.3:63042735-63042754 MS.gene054931:CDS 55.0%
GAAAGAGTTGCAGGCTTCGG+TGG - chr7.3:63042738-63042757 MS.gene054931:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 63042349 63042852 63042349 ID=MS.gene054931
chr7.3 mRNA 63042349 63042852 63042349 ID=MS.gene054931.t1;Parent=MS.gene054931
chr7.3 exon 63042714 63042852 63042714 ID=MS.gene054931.t1.exon1;Parent=MS.gene054931.t1
chr7.3 CDS 63042714 63042852 63042714 ID=cds.MS.gene054931.t1;Parent=MS.gene054931.t1
chr7.3 exon 63042349 63042478 63042349 ID=MS.gene054931.t1.exon2;Parent=MS.gene054931.t1
chr7.3 CDS 63042349 63042478 63042349 ID=cds.MS.gene054931.t1;Parent=MS.gene054931.t1
Gene Sequence

>MS.gene054931

ATGGACAAAAAAGAGTGCAGTTCTTCACAAGATCCTGATGTACGAAAGGGACCATGGACAATGGAAGAAGACTTGATCTTGATCAACTATATTGCCAATCATGGTGAAGGTGTTTGGAACTCCTTGGCTAAATCTGCTGGTAATTAACTAAACACACATACATCAATCTTCTACTTTCATTTAGTTAATTAATTAAATAATAATAATAAAGGTATTTTAACATGCTTAAGATCTCGTGCAAAAGTGCTTTGTATGGTGATACCTAAAATCTAATGAGTGTATAATAATTGTTTAAAAAGAATGACCTAGCTTGGTAGGGTACCTTAATCAATGTTTCATAAATCATCATAATAATATGGTTTCAAACATTTTAGGTCTTAAACGTACCGGAAAGAGTTGCAGGCTTCGGTGGCTAAACTATCTTCGACCTGATGTTAGACGAGGGAATATTACACCAGAGGAACAACTCTTGATCATTGAACTTCATGCTAAGTGGGGAAACAG
Protein sequence

>MS.gene054931.t1

MDKKECSSSQDPDVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIIELHAKWGN