Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055328.t1 | XP_013468620.1 | 99.3 | 403 | 2 | 1 | 14 | 416 | 13 | 414 | 6.90E-185 | 656.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055328.t1 | Q940T9 | 40.0 | 70 | 42 | 0 | 298 | 367 | 275 | 344 | 1.7e-06 | 55.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055328.t1 | A0A072VLD7 | 99.3 | 403 | 2 | 1 | 14 | 416 | 13 | 414 | 5.0e-185 | 656.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene055328.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055328.t1 | MTR_1g073350 | 99.504 | 403 | 1 | 1 | 14 | 416 | 13 | 414 | 0.0 | 815 |
| MS.gene055328.t1 | MTR_1g044785 | 72.881 | 236 | 54 | 4 | 182 | 416 | 4 | 230 | 2.22e-113 | 332 |
| MS.gene055328.t1 | MTR_8g098725 | 35.545 | 211 | 108 | 7 | 210 | 410 | 133 | 325 | 1.58e-23 | 100 |
| MS.gene055328.t1 | MTR_8g098725 | 35.545 | 211 | 104 | 7 | 210 | 410 | 133 | 321 | 1.74e-23 | 100 |
| MS.gene055328.t1 | MTR_2g068730 | 56.164 | 73 | 32 | 0 | 299 | 371 | 144 | 216 | 3.45e-21 | 92.8 |
| MS.gene055328.t1 | MTR_5g010120 | 56.944 | 72 | 31 | 0 | 290 | 361 | 145 | 216 | 8.07e-20 | 88.6 |
| MS.gene055328.t1 | MTR_2g096080 | 46.392 | 97 | 50 | 1 | 266 | 362 | 105 | 199 | 3.45e-19 | 87.0 |
| MS.gene055328.t1 | MTR_4g061823 | 43.878 | 98 | 54 | 1 | 266 | 363 | 94 | 190 | 1.03e-18 | 85.5 |
| MS.gene055328.t1 | MTR_4g061910 | 43.878 | 98 | 54 | 1 | 266 | 363 | 94 | 190 | 1.03e-18 | 85.5 |
| MS.gene055328.t1 | MTR_1g008220 | 36.296 | 135 | 69 | 4 | 230 | 363 | 159 | 277 | 1.90e-16 | 79.7 |
| MS.gene055328.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 314 | 362 | 197 | 245 | 3.92e-15 | 75.1 |
| MS.gene055328.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 314 | 362 | 190 | 238 | 4.03e-15 | 75.1 |
| MS.gene055328.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 314 | 362 | 226 | 274 | 7.58e-15 | 74.7 |
| MS.gene055328.t1 | MTR_3g105710 | 42.308 | 78 | 39 | 1 | 289 | 366 | 209 | 280 | 4.01e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055328.t1 | AT1G04500 | 51.435 | 418 | 144 | 15 | 13 | 416 | 5 | 377 | 9.75e-119 | 350 |
| MS.gene055328.t1 | AT1G04500 | 51.319 | 417 | 144 | 15 | 14 | 416 | 15 | 386 | 5.81e-118 | 349 |
| MS.gene055328.t1 | AT1G04500 | 51.319 | 417 | 144 | 15 | 14 | 416 | 15 | 386 | 5.81e-118 | 349 |
| MS.gene055328.t1 | AT2G33350 | 49.188 | 431 | 163 | 16 | 9 | 416 | 1 | 398 | 9.69e-103 | 310 |
| MS.gene055328.t1 | AT2G33350 | 49.074 | 432 | 164 | 16 | 8 | 416 | 20 | 418 | 1.21e-102 | 311 |
| MS.gene055328.t1 | AT2G33350 | 49.531 | 426 | 159 | 16 | 14 | 416 | 17 | 409 | 7.00e-102 | 309 |
| MS.gene055328.t1 | AT2G33350 | 49.415 | 427 | 159 | 17 | 14 | 416 | 17 | 410 | 4.36e-100 | 304 |
| MS.gene055328.t1 | AT1G04500 | 45.614 | 342 | 123 | 16 | 14 | 339 | 15 | 309 | 6.08e-70 | 226 |
| MS.gene055328.t1 | AT2G33350 | 43.678 | 348 | 141 | 15 | 14 | 339 | 17 | 331 | 4.51e-60 | 199 |
| MS.gene055328.t1 | AT5G41380 | 56.250 | 96 | 33 | 3 | 267 | 362 | 173 | 259 | 1.10e-23 | 100 |
| MS.gene055328.t1 | AT1G63820 | 39.837 | 123 | 72 | 1 | 262 | 382 | 134 | 256 | 3.09e-23 | 99.4 |
| MS.gene055328.t1 | AT3G12890 | 52.809 | 89 | 36 | 1 | 309 | 397 | 130 | 212 | 4.37e-22 | 95.1 |
| MS.gene055328.t1 | AT4G27900 | 38.144 | 97 | 45 | 2 | 267 | 363 | 178 | 259 | 5.83e-16 | 77.8 |
| MS.gene055328.t1 | AT4G27900 | 38.144 | 97 | 45 | 2 | 267 | 363 | 178 | 259 | 5.83e-16 | 77.8 |
| MS.gene055328.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 316 | 362 | 137 | 183 | 3.31e-15 | 73.9 |
| MS.gene055328.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 316 | 362 | 137 | 183 | 3.31e-15 | 73.9 |
| MS.gene055328.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 316 | 362 | 137 | 183 | 3.31e-15 | 73.9 |
| MS.gene055328.t1 | AT5G59990 | 39.850 | 133 | 63 | 3 | 266 | 398 | 120 | 235 | 3.74e-15 | 75.1 |
| MS.gene055328.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 316 | 362 | 216 | 262 | 7.19e-15 | 74.7 |
| MS.gene055328.t1 | AT5G24930 | 40.000 | 70 | 42 | 0 | 298 | 367 | 275 | 344 | 9.96e-11 | 63.5 |
Find 75 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCCAAGTTTGAGATTTC+TGG | 0.139924 | 1.3:-52838422 | None:intergenic |
| TGATTCAGTTGCACCTCTTA+TGG | 0.196419 | 1.3:+52837254 | MS.gene055328:CDS |
| TTTGCAAAGAATGATGATTT+TGG | 0.203362 | 1.3:+52838769 | MS.gene055328:CDS |
| TCAGAATTCTGCAAAGCTTC+TGG | 0.225403 | 1.3:-52836844 | None:intergenic |
| GTTTAACCCTCCTGACCTTC+AGG | 0.295741 | 1.3:+52837554 | MS.gene055328:CDS |
| TCTCCTTCTTGCAATTATCT+TGG | 0.304557 | 1.3:+52837357 | MS.gene055328:CDS |
| TGATAGATTATTGCTATTGT+TGG | 0.307253 | 1.3:-52837019 | None:intergenic |
| TGGTTTGTTTGGTGGAAATA+TGG | 0.310217 | 1.3:+52837446 | MS.gene055328:CDS |
| TCGAAAATTCGAGCGCTAAG+AGG | 0.329398 | 1.3:-52836799 | None:intergenic |
| ACTGATAGTTCTGGTTTGTT+TGG | 0.336862 | 1.3:+52837435 | MS.gene055328:CDS |
| TAATATATTTGTTGCATATG+AGG | 0.345362 | 1.3:-52836905 | None:intergenic |
| GATTCAGTTGCACCTCTTAT+GGG | 0.348322 | 1.3:+52837255 | MS.gene055328:CDS |
| GCTTTGTCTACTGATAGTTC+TGG | 0.348575 | 1.3:+52837426 | MS.gene055328:CDS |
| AAACTTCAGCAAGAAAATTA+AGG | 0.349765 | 1.3:+52838526 | MS.gene055328:CDS |
| CTTGGAAGACTCCACTTTCA+AGG | 0.364962 | 1.3:+52838436 | MS.gene055328:CDS |
| AAAACAGGTGGTAATGATAA+AGG | 0.370742 | 1.3:-52837282 | None:intergenic |
| CTTGATTATCAAGGAGATAA+TGG | 0.371169 | 1.3:+52837498 | MS.gene055328:CDS |
| AGAGGTGCAACTGAATCATT+TGG | 0.378768 | 1.3:-52837249 | None:intergenic |
| GTTGATATTGTTGTTTGTGC+TGG | 0.381949 | 1.3:-52836986 | None:intergenic |
| GCTACTAGTTGTTGATTCTC+AGG | 0.396916 | 1.3:-52838371 | None:intergenic |
| CAGAATTCTGCAAAGCTTCT+GGG | 0.401559 | 1.3:-52836843 | None:intergenic |
| GGGTTAAACACCCTCTGAAT+AGG | 0.414662 | 1.3:-52837540 | None:intergenic |
| AATGGAATAGTTGCATTTGA+AGG | 0.424110 | 1.3:-52839135 | None:intergenic |
| TGCAATTATCTTGGTCCTGC+CGG | 0.431147 | 1.3:+52837366 | MS.gene055328:CDS |
| GCAACTATTCCATTCAATCA+TGG | 0.437657 | 1.3:+52839144 | MS.gene055328:CDS |
| GATAGTTCTGGTTTGTTTGG+TGG | 0.449481 | 1.3:+52837438 | MS.gene055328:CDS |
| TAATTGCAAGAAGGAGAAGA+AGG | 0.453970 | 1.3:-52837351 | None:intergenic |
| ATATTGTTGTTTGTGCTGGT+TGG | 0.455798 | 1.3:-52836982 | None:intergenic |
| ACAGCATGTTCATCCGTTGA+TGG | 0.462537 | 1.3:+52837207 | MS.gene055328:CDS |
| TTATCTTGGTCCTGCCGGTA+TGG | 0.463392 | 1.3:+52837371 | MS.gene055328:CDS |
| TGTGAAAGAGGAAGATGATA+TGG | 0.463481 | 1.3:+52839070 | MS.gene055328:CDS |
| GACACCAGAAATCTCAAACT+TGG | 0.464943 | 1.3:+52838418 | MS.gene055328:CDS |
| CGAAAATTCGAGCGCTAAGA+GGG | 0.464964 | 1.3:-52836798 | None:intergenic |
| TGAAGAAGAAGATGAAGAAG+AGG | 0.466581 | 1.3:+52838822 | MS.gene055328:CDS |
| GAAGACTCCACTTTCAAGGT+TGG | 0.473074 | 1.3:+52838440 | MS.gene055328:CDS |
| ACAGTCAATACCTGAAGGTC+AGG | 0.480367 | 1.3:-52837564 | None:intergenic |
| GATAGCAGACCTCGAGTTAG+AGG | 0.482620 | 1.3:+52838742 | MS.gene055328:CDS |
| GAATCAAATCCATGATTGAA+TGG | 0.483820 | 1.3:-52839153 | None:intergenic |
| CAGCATGTTCATCCGTTGAT+GGG | 0.484565 | 1.3:+52837208 | MS.gene055328:CDS |
| GCAGTAGTAAGAGAACCATT+AGG | 0.493364 | 1.3:-52837405 | None:intergenic |
| ATGGCGGCATACATGCCTAA+TGG | 0.504835 | 1.3:+52837390 | MS.gene055328:CDS |
| GTATGCATGCCGCAAAACTC+TGG | 0.507026 | 1.3:+52838717 | MS.gene055328:intron |
| GATAAAGGAGCTCCCATAAG+AGG | 0.508957 | 1.3:-52837267 | None:intergenic |
| TTGTCCTGATCCTATTCAGA+GGG | 0.518686 | 1.3:+52837530 | MS.gene055328:CDS |
| AACACCCTCTGAATAGGATC+AGG | 0.520235 | 1.3:-52837534 | None:intergenic |
| AATGAAGGAACATTGAAAGA+TGG | 0.520786 | 1.3:-52837108 | None:intergenic |
| ATGTATGCCGCCATACCGGC+AGG | 0.531779 | 1.3:-52837381 | None:intergenic |
| ACTACAGGTAGTTGTGAAAG+AGG | 0.540728 | 1.3:+52839058 | MS.gene055328:intron |
| GAGAATCAACAACTAGTAGC+TGG | 0.540899 | 1.3:+52838374 | MS.gene055328:CDS |
| ACACAAGAACTTGATTATCA+AGG | 0.541577 | 1.3:+52837489 | MS.gene055328:CDS |
| GAAGGAGAAGAAGGGTTCAA+AGG | 0.541723 | 1.3:-52837342 | None:intergenic |
| GAAAACTTTCTGTTGAACAA+AGG | 0.552214 | 1.3:+52838462 | MS.gene055328:CDS |
| GGGTTCAAAGGAACATAAGA+AGG | 0.558201 | 1.3:-52837330 | None:intergenic |
| GATATATTTGCTCATATCAG+TGG | 0.567084 | 1.3:+52839104 | MS.gene055328:CDS |
| AGGCATGTATGCCGCCATAC+CGG | 0.574531 | 1.3:-52837385 | None:intergenic |
| TCTAACTCGAGGTCTGCTAT+CGG | 0.575030 | 1.3:-52838740 | None:intergenic |
| CAACAACTAGTAGCTGGTGC+TGG | 0.575480 | 1.3:+52838380 | MS.gene055328:CDS |
| GATGTGACTGGAAGGAATGA+AGG | 0.578846 | 1.3:-52837123 | None:intergenic |
| AATTGCAAGAAGGAGAAGAA+GGG | 0.582488 | 1.3:-52837350 | None:intergenic |
| ACTTGCTGTGATGATGTGAC+TGG | 0.583948 | 1.3:-52837135 | None:intergenic |
| TCTTGGTCCTGCCGGTATGG+CGG | 0.591145 | 1.3:+52837374 | MS.gene055328:CDS |
| AGAAGCTTTGCAGAATTCTG+AGG | 0.591368 | 1.3:+52836846 | MS.gene055328:CDS |
| GTCAATACCTGAAGGTCAGG+AGG | 0.601952 | 1.3:-52837561 | None:intergenic |
| ATTGTCCTGATCCTATTCAG+AGG | 0.615011 | 1.3:+52837529 | MS.gene055328:CDS |
| TGATAGTGAGAAATCTATTG+AGG | 0.622836 | 1.3:-52837085 | None:intergenic |
| GGACCAAGATAATTGCAAGA+AGG | 0.631874 | 1.3:-52837360 | None:intergenic |
| GCAAATCGTCCTCTAACTCG+AGG | 0.634840 | 1.3:-52838751 | None:intergenic |
| GATATGAGCAAATATATCTG+AGG | 0.650959 | 1.3:-52839099 | None:intergenic |
| TCAATACCTGAAGGTCAGGA+GGG | 0.652626 | 1.3:-52837560 | None:intergenic |
| GATACTAATAGAACTGCTAG+TGG | 0.652698 | 1.3:+52838793 | MS.gene055328:CDS |
| GCTGTGATGATGTGACTGGA+AGG | 0.653513 | 1.3:-52837131 | None:intergenic |
| GTAAGTTGAACATGATGATG+AGG | 0.662251 | 1.3:-52837186 | None:intergenic |
| ATACTGCGAAAACCCATCAA+CGG | 0.666515 | 1.3:-52837220 | None:intergenic |
| TGAGATTTCTGGTGTCAGAG+TGG | 0.672060 | 1.3:-52838411 | None:intergenic |
| TAGCAATAGCAATAACACAG+TGG | 0.772848 | 1.3:+52836951 | MS.gene055328:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTACTTTTTCATT+TGG | + | chr1.3:52837904-52837923 | MS.gene055328:intron | 10.0% |
| !!! | TCTTATTTATTACTTTATTT+AGG | + | chr1.3:52836720-52836739 | MS.gene055328:intron | 10.0% |
| !! | AAAATAAATGTTTCGAAAAT+CGG | - | chr1.3:52838011-52838030 | None:intergenic | 15.0% |
| !! | TAAAAAATAACTATGGAAAA+TGG | - | chr1.3:52837658-52837677 | None:intergenic | 15.0% |
| !! | TATCTACTTATTTATTTGAT+TGG | + | chr1.3:52839000-52839019 | MS.gene055328:intron | 15.0% |
| !! | TCATTCATAAAAAATAACTA+TGG | - | chr1.3:52837665-52837684 | None:intergenic | 15.0% |
| !! | TTACAAGTTTATATTTAACT+TGG | + | chr1.3:52838897-52838916 | MS.gene055328:intron | 15.0% |
| !!! | ATAATGCTAATTTATTTTTC+AGG | + | chr1.3:52838340-52838359 | MS.gene055328:intron | 15.0% |
| !! | AAAAAAGTAGCATAGTATAT+TGG | + | chr1.3:52838188-52838207 | MS.gene055328:intron | 20.0% |
| !! | AATATACAAAAAATGAGAAC+AGG | - | chr1.3:52837889-52837908 | None:intergenic | 20.0% |
| !! | TGTAACTTAAATTACTTCTT+TGG | + | chr1.3:52836562-52836581 | MS.gene055328:intron | 20.0% |
| !!! | CTTTTTTCCAATAAAATTGA+TGG | + | chr1.3:52838234-52838253 | MS.gene055328:intron | 20.0% |
| !!! | TAATATATTTGTTGCATATG+AGG | - | chr1.3:52836908-52836927 | None:intergenic | 20.0% |
| !!! | TATGCTACTTTTTTTTTTGT+AGG | - | chr1.3:52838182-52838201 | None:intergenic | 20.0% |
| !!! | TGTTTTACCATCAATTTTAT+TGG | - | chr1.3:52838244-52838263 | None:intergenic | 20.0% |
| !!! | TGTTTTTTATGTCTAAACTT+TGG | - | chr1.3:52836676-52836695 | None:intergenic | 20.0% |
| !!! | TTATTTTAAAGCTTTGTAAG+AGG | + | chr1.3:52838024-52838043 | MS.gene055328:intron | 20.0% |
| ! | AAACTTCAGCAAGAAAATTA+AGG | + | chr1.3:52838526-52838545 | MS.gene055328:CDS | 25.0% |
| ! | AAGAACCATTCATATGAAAT+AGG | - | chr1.3:52838283-52838302 | None:intergenic | 25.0% |
| ! | AAGATTAACAACCTTATAGT+TGG | - | chr1.3:52837723-52837742 | None:intergenic | 25.0% |
| ! | AAGTAACATGATAACTGATA+AGG | - | chr1.3:52838601-52838620 | None:intergenic | 25.0% |
| ! | AATGTCCTATTTCATATGAA+TGG | + | chr1.3:52838275-52838294 | MS.gene055328:intron | 25.0% |
| ! | ACTTCACATGTATTACATTA+TGG | + | chr1.3:52836305-52836324 | MS.gene055328:intron | 25.0% |
| ! | AGTTCAAACCATAATTGAAT+TGG | - | chr1.3:52837941-52837960 | None:intergenic | 25.0% |
| ! | ATAAACTGTTTACATATCTG+TGG | - | chr1.3:52838080-52838099 | None:intergenic | 25.0% |
| ! | ATATTGGCATATATTCTATG+AGG | - | chr1.3:52838104-52838123 | None:intergenic | 25.0% |
| ! | TAAAGGAAATGTAAACAACA+TGG | - | chr1.3:52836749-52836768 | None:intergenic | 25.0% |
| ! | TATAAACTTGTAAAGTGTGT+CGG | - | chr1.3:52838890-52838909 | None:intergenic | 25.0% |
| ! | TCCTGTAAACATTGATATAA+AGG | - | chr1.3:52836766-52836785 | None:intergenic | 25.0% |
| ! | TCCTTTATATCAATGTTTAC+AGG | + | chr1.3:52836762-52836781 | MS.gene055328:intron | 25.0% |
| ! | TTAGTCATCCAATTCAATTA+TGG | + | chr1.3:52837930-52837949 | MS.gene055328:intron | 25.0% |
| !! | AGGTAATTTCTTTTTGCAAA+AGG | + | chr1.3:52838044-52838063 | MS.gene055328:intron | 25.0% |
| !! | TGATAGATTATTGCTATTGT+TGG | - | chr1.3:52837022-52837041 | None:intergenic | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1.3:52838769-52838788 | MS.gene055328:CDS | 25.0% |
| !! | TTTTGTGTAAAAGATAGTTG+TGG | + | chr1.3:52836189-52836208 | MS.gene055328:intron | 25.0% |
| AAATGTTTCGAAAATCGGAT+TGG | - | chr1.3:52838006-52838025 | None:intergenic | 30.0% | |
| AAGTTAGAGAGAGAGAAATA+GGG | + | chr1.3:52836269-52836288 | MS.gene055328:intron | 30.0% | |
| AATGAAGGAACATTGAAAGA+TGG | - | chr1.3:52837111-52837130 | None:intergenic | 30.0% | |
| AATGGAATAGTTGCATTTGA+AGG | - | chr1.3:52839138-52839157 | None:intergenic | 30.0% | |
| ACACAAGAACTTGATTATCA+AGG | + | chr1.3:52837489-52837508 | MS.gene055328:CDS | 30.0% | |
| ACTTTAGGTCATTGTTCAAT+TGG | - | chr1.3:52837971-52837990 | None:intergenic | 30.0% | |
| AGTTGTGTTTGTTCAATGTA+TGG | - | chr1.3:52836370-52836389 | None:intergenic | 30.0% | |
| ATATACAAGTTCCTTGTCTA+TGG | - | chr1.3:52836591-52836610 | None:intergenic | 30.0% | |
| CATACAAATATGTGACATGT+TGG | - | chr1.3:52836515-52836534 | None:intergenic | 30.0% | |
| CTTGATTATCAAGGAGATAA+TGG | + | chr1.3:52837498-52837517 | MS.gene055328:CDS | 30.0% | |
| GAAAACTTTCTGTTGAACAA+AGG | + | chr1.3:52838462-52838481 | MS.gene055328:CDS | 30.0% | |
| GATATATTTGCTCATATCAG+TGG | + | chr1.3:52839104-52839123 | MS.gene055328:CDS | 30.0% | |
| GATATGAGCAAATATATCTG+AGG | - | chr1.3:52839102-52839121 | None:intergenic | 30.0% | |
| GTATGTTGAATGCACAATTA+TGG | + | chr1.3:52836530-52836549 | MS.gene055328:intron | 30.0% | |
| GTTTGGAGAAAAAACAAAGA+AGG | - | chr1.3:52836410-52836429 | None:intergenic | 30.0% | |
| TAAGTTAGAGAGAGAGAAAT+AGG | + | chr1.3:52836268-52836287 | MS.gene055328:intron | 30.0% | |
| TACAAAAAATGAGAACAGGT+TGG | - | chr1.3:52837885-52837904 | None:intergenic | 30.0% | |
| TTATCTTCAGATTCAGATTC+TGG | - | chr1.3:52838321-52838340 | None:intergenic | 30.0% | |
| ! | AAAACAGGTGGTAATGATAA+AGG | - | chr1.3:52837285-52837304 | None:intergenic | 30.0% |
| ! | CATTTGATAACTGTAACTAC+AGG | + | chr1.3:52839043-52839062 | MS.gene055328:intron | 30.0% |
| ! | GTATGGAAACTGATTTAATG+TGG | - | chr1.3:52836353-52836372 | None:intergenic | 30.0% |
| ! | GTCTAAAGTTTCCAACTATA+AGG | + | chr1.3:52837709-52837728 | MS.gene055328:intron | 30.0% |
| ! | TGATAGTGAGAAATCTATTG+AGG | - | chr1.3:52837088-52837107 | None:intergenic | 30.0% |
| ! | TTTCTTTTTGCAAAAGGTCA+TGG | + | chr1.3:52838050-52838069 | MS.gene055328:intron | 30.0% |
| ! | TTTGGTGGAAATATGGTTTT+TGG | + | chr1.3:52837453-52837472 | MS.gene055328:CDS | 30.0% |
| !!! | CAAGCGATGTTTTTTAAAAC+TGG | + | chr1.3:52837751-52837770 | MS.gene055328:intron | 30.0% |
| AATTGCAAGAAGGAGAAGAA+GGG | - | chr1.3:52837353-52837372 | None:intergenic | 35.0% | |
| AGGTGAGACTGTGATTATAA+AGG | - | chr1.3:52838162-52838181 | None:intergenic | 35.0% | |
| ATATGCAGTAAGAAGAGAAG+TGG | - | chr1.3:52838659-52838678 | None:intergenic | 35.0% | |
| ATGCAATCCTCTTCAAAAAC+AGG | - | chr1.3:52837300-52837319 | None:intergenic | 35.0% | |
| CAGTTCTGTTTGATTATGCA+TGG | - | chr1.3:52838574-52838593 | None:intergenic | 35.0% | |
| GAGAGAGAAATAGGGATTTA+AGG | + | chr1.3:52836277-52836296 | MS.gene055328:intron | 35.0% | |
| GATACTAATAGAACTGCTAG+TGG | + | chr1.3:52838793-52838812 | MS.gene055328:CDS | 35.0% | |
| GATTGAACGTAATTGAGTCA+CGG | + | chr1.3:52837854-52837873 | MS.gene055328:intron | 35.0% | |
| GCAACTATTCCATTCAATCA+TGG | + | chr1.3:52839144-52839163 | MS.gene055328:CDS | 35.0% | |
| GGTGAGACTGTGATTATAAA+GGG | - | chr1.3:52838161-52838180 | None:intergenic | 35.0% | |
| TAATTGCAAGAAGGAGAAGA+AGG | - | chr1.3:52837354-52837373 | None:intergenic | 35.0% | |
| TAGCAATAGCAATAACACAG+TGG | + | chr1.3:52836951-52836970 | MS.gene055328:CDS | 35.0% | |
| TCTCCTTCTTGCAATTATCT+TGG | + | chr1.3:52837357-52837376 | MS.gene055328:CDS | 35.0% | |
| TGAACAAACACAACTAGCAT+TGG | + | chr1.3:52836375-52836394 | MS.gene055328:intron | 35.0% | |
| TGAAGAAGAAGATGAAGAAG+AGG | + | chr1.3:52838822-52838841 | MS.gene055328:CDS | 35.0% | |
| TGGAGATCTTGTGAAACTTT+AGG | - | chr1.3:52837986-52838005 | None:intergenic | 35.0% | |
| TGTGAAAGAGGAAGATGATA+TGG | + | chr1.3:52839070-52839089 | MS.gene055328:CDS | 35.0% | |
| TTGAAACAGTCAATACCTGA+AGG | - | chr1.3:52837572-52837591 | None:intergenic | 35.0% | |
| ! | AAGTTTTCCAACCTTGAAAG+TGG | - | chr1.3:52838450-52838469 | None:intergenic | 35.0% |
| ! | GTAAGTTGAACATGATGATG+AGG | - | chr1.3:52837189-52837208 | None:intergenic | 35.0% |
| ! | TCAGATTCAGATTCTGGAAA+GGG | - | chr1.3:52838315-52838334 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTGAGATTTC+TGG | - | chr1.3:52838425-52838444 | None:intergenic | 35.0% |
| ! | TTCAGATTCAGATTCTGGAA+AGG | - | chr1.3:52838316-52838335 | None:intergenic | 35.0% |
| ! | TTCTTTGGTTTCCATAGACA+AGG | + | chr1.3:52836577-52836596 | MS.gene055328:intron | 35.0% |
| !! | ACTGATAGTTCTGGTTTGTT+TGG | + | chr1.3:52837435-52837454 | MS.gene055328:CDS | 35.0% |
| !! | ATATTGTTGTTTGTGCTGGT+TGG | - | chr1.3:52836985-52837004 | None:intergenic | 35.0% |
| !! | ATTGCTAGCTACTGTTTTGA+TGG | - | chr1.3:52838127-52838146 | None:intergenic | 35.0% |
| !! | GTTGATATTGTTGTTTGTGC+TGG | - | chr1.3:52836989-52837008 | None:intergenic | 35.0% |
| !! | TGACATGTTGGAGCATTTTT+AGG | - | chr1.3:52836503-52836522 | None:intergenic | 35.0% |
| !! | TGGTTTGTTTGGTGGAAATA+TGG | + | chr1.3:52837446-52837465 | MS.gene055328:CDS | 35.0% |
| !!! | ATTACCACCTGTTTTTGAAG+AGG | + | chr1.3:52837290-52837309 | MS.gene055328:CDS | 35.0% |
| !!! | GCTACTGTTTTGATGGATAT+TGG | - | chr1.3:52838120-52838139 | None:intergenic | 35.0% |
| ACTACAGGTAGTTGTGAAAG+AGG | + | chr1.3:52839058-52839077 | MS.gene055328:intron | 40.0% | |
| AGAAGCTTTGCAGAATTCTG+AGG | + | chr1.3:52836846-52836865 | MS.gene055328:CDS | 40.0% | |
| ATACTGCGAAAACCCATCAA+CGG | - | chr1.3:52837223-52837242 | None:intergenic | 40.0% | |
| ATTGTCCTGATCCTATTCAG+AGG | + | chr1.3:52837529-52837548 | MS.gene055328:CDS | 40.0% | |
| CAATCCTCTTCAAAAACAGG+TGG | - | chr1.3:52837297-52837316 | None:intergenic | 40.0% | |
| CAGAATTCTGCAAAGCTTCT+GGG | - | chr1.3:52836846-52836865 | None:intergenic | 40.0% | |
| CGGCATGCATACTACATATT+TGG | - | chr1.3:52838709-52838728 | None:intergenic | 40.0% | |
| GACACCAGAAATCTCAAACT+TGG | + | chr1.3:52838418-52838437 | MS.gene055328:CDS | 40.0% | |
| GAGAATCAACAACTAGTAGC+TGG | + | chr1.3:52838374-52838393 | MS.gene055328:CDS | 40.0% | |
| GATTCAGTTGCACCTCTTAT+GGG | + | chr1.3:52837255-52837274 | MS.gene055328:CDS | 40.0% | |
| GCAGTAGTAAGAGAACCATT+AGG | - | chr1.3:52837408-52837427 | None:intergenic | 40.0% | |
| GCTTTGTCTACTGATAGTTC+TGG | + | chr1.3:52837426-52837445 | MS.gene055328:CDS | 40.0% | |
| GGACCAAGATAATTGCAAGA+AGG | - | chr1.3:52837363-52837382 | None:intergenic | 40.0% | |
| GGGTTCAAAGGAACATAAGA+AGG | - | chr1.3:52837333-52837352 | None:intergenic | 40.0% | |
| GTCACAACATTGTCACATGA+AGG | + | chr1.3:52836444-52836463 | MS.gene055328:intron | 40.0% | |
| GTGACAATGTTGTGACATGT+TGG | - | chr1.3:52836440-52836459 | None:intergenic | 40.0% | |
| GTTCAACTGATTGAATCGAG+TGG | - | chr1.3:52837783-52837802 | None:intergenic | 40.0% | |
| TATATTGGCCAGTAGCAGAA+AGG | + | chr1.3:52838203-52838222 | MS.gene055328:intron | 40.0% | |
| TCAGAATTCTGCAAAGCTTC+TGG | - | chr1.3:52836847-52836866 | None:intergenic | 40.0% | |
| TGATTCAGTTGCACCTCTTA+TGG | + | chr1.3:52837254-52837273 | MS.gene055328:CDS | 40.0% | |
| TTGTCCTGATCCTATTCAGA+GGG | + | chr1.3:52837530-52837549 | MS.gene055328:CDS | 40.0% | |
| TTGTGATTCCTTTCTGCTAC+TGG | - | chr1.3:52838214-52838233 | None:intergenic | 40.0% | |
| ! | AGAGGTGCAACTGAATCATT+TGG | - | chr1.3:52837252-52837271 | None:intergenic | 40.0% |
| ! | CTTTTTGCAAAAGGTCATGG+TGG | + | chr1.3:52838053-52838072 | MS.gene055328:intron | 40.0% |
| !! | GATAGTTCTGGTTTGTTTGG+TGG | + | chr1.3:52837438-52837457 | MS.gene055328:CDS | 40.0% |
| !! | GCTACTAGTTGTTGATTCTC+AGG | - | chr1.3:52838374-52838393 | None:intergenic | 40.0% |
| AACACCCTCTGAATAGGATC+AGG | - | chr1.3:52837537-52837556 | None:intergenic | 45.0% | |
| AACTTGGCTAATGCGCTGTT+TGG | + | chr1.3:52838913-52838932 | MS.gene055328:intron | 45.0% | |
| ACAGCATGTTCATCCGTTGA+TGG | + | chr1.3:52837207-52837226 | MS.gene055328:CDS | 45.0% | |
| ACAGTCAATACCTGAAGGTC+AGG | - | chr1.3:52837567-52837586 | None:intergenic | 45.0% | |
| CAGCATGTTCATCCGTTGAT+GGG | + | chr1.3:52837208-52837227 | MS.gene055328:CDS | 45.0% | |
| CGAAAATTCGAGCGCTAAGA+GGG | - | chr1.3:52836801-52836820 | None:intergenic | 45.0% | |
| CTTGGAAGACTCCACTTTCA+AGG | + | chr1.3:52838436-52838455 | MS.gene055328:CDS | 45.0% | |
| GAACTGAGAATCGACCAGTT+TGG | + | chr1.3:52837799-52837818 | MS.gene055328:intron | 45.0% | |
| GAAGACTCCACTTTCAAGGT+TGG | + | chr1.3:52838440-52838459 | MS.gene055328:CDS | 45.0% | |
| GAAGGAGAAGAAGGGTTCAA+AGG | - | chr1.3:52837345-52837364 | None:intergenic | 45.0% | |
| GACAAAACCAACTGCCAAAC+TGG | - | chr1.3:52837816-52837835 | None:intergenic | 45.0% | |
| GACATGTTGGAGTCAAGGTT+TGG | - | chr1.3:52836427-52836446 | None:intergenic | 45.0% | |
| GATAAAGGAGCTCCCATAAG+AGG | - | chr1.3:52837270-52837289 | None:intergenic | 45.0% | |
| GATGTGACTGGAAGGAATGA+AGG | - | chr1.3:52837126-52837145 | None:intergenic | 45.0% | |
| GGGTTAAACACCCTCTGAAT+AGG | - | chr1.3:52837543-52837562 | None:intergenic | 45.0% | |
| GTTGTGACATGTTGGAGTCA+AGG | - | chr1.3:52836432-52836451 | None:intergenic | 45.0% | |
| TCAATACCTGAAGGTCAGGA+GGG | - | chr1.3:52837563-52837582 | None:intergenic | 45.0% | |
| TCGAAAATTCGAGCGCTAAG+AGG | - | chr1.3:52836802-52836821 | None:intergenic | 45.0% | |
| TCTAACTCGAGGTCTGCTAT+CGG | - | chr1.3:52838743-52838762 | None:intergenic | 45.0% | |
| TGCAATTATCTTGGTCCTGC+CGG | + | chr1.3:52837366-52837385 | MS.gene055328:CDS | 45.0% | |
| !! | ACACAACTAGCATTGGCATG+AGG | + | chr1.3:52836382-52836401 | MS.gene055328:intron | 45.0% |
| !! | ACTTGCTGTGATGATGTGAC+TGG | - | chr1.3:52837138-52837157 | None:intergenic | 45.0% |
| !! | TGAGATTTCTGGTGTCAGAG+TGG | - | chr1.3:52838414-52838433 | None:intergenic | 45.0% |
| ATGGCGGCATACATGCCTAA+TGG | + | chr1.3:52837390-52837409 | MS.gene055328:CDS | 50.0% | |
| CAACAACTAGTAGCTGGTGC+TGG | + | chr1.3:52838380-52838399 | MS.gene055328:CDS | 50.0% | |
| GAATCGACCAGTTTGGCAGT+TGG | + | chr1.3:52837806-52837825 | MS.gene055328:intron | 50.0% | |
| GATAGCAGACCTCGAGTTAG+AGG | + | chr1.3:52838742-52838761 | MS.gene055328:CDS | 50.0% | |
| GCAAATCGTCCTCTAACTCG+AGG | - | chr1.3:52838754-52838773 | None:intergenic | 50.0% | |
| GTATGCATGCCGCAAAACTC+TGG | + | chr1.3:52838717-52838736 | MS.gene055328:intron | 50.0% | |
| GTCAATACCTGAAGGTCAGG+AGG | - | chr1.3:52837564-52837583 | None:intergenic | 50.0% | |
| GTTTAACCCTCCTGACCTTC+AGG | + | chr1.3:52837554-52837573 | MS.gene055328:CDS | 50.0% | |
| TTATCTTGGTCCTGCCGGTA+TGG | + | chr1.3:52837371-52837390 | MS.gene055328:CDS | 50.0% | |
| ! | GCTGTGATGATGTGACTGGA+AGG | - | chr1.3:52837134-52837153 | None:intergenic | 50.0% |
| ! | TGCTATCGGCCAGAGTTTTG+CGG | - | chr1.3:52838729-52838748 | None:intergenic | 50.0% |
| AGGCATGTATGCCGCCATAC+CGG | - | chr1.3:52837388-52837407 | None:intergenic | 55.0% | |
| ATGTATGCCGCCATACCGGC+AGG | - | chr1.3:52837384-52837403 | None:intergenic | 60.0% | |
| TCTTGGTCCTGCCGGTATGG+CGG | + | chr1.3:52837374-52837393 | MS.gene055328:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52836126 | 52839172 | 52836126 | ID=MS.gene055328 |
| chr1.3 | mRNA | 52836126 | 52839172 | 52836126 | ID=MS.gene055328.t1;Parent=MS.gene055328 |
| chr1.3 | exon | 52836126 | 52836164 | 52836126 | ID=MS.gene055328.t1.exon1;Parent=MS.gene055328.t1 |
| chr1.3 | CDS | 52836126 | 52836164 | 52836126 | ID=cds.MS.gene055328.t1;Parent=MS.gene055328.t1 |
| chr1.3 | exon | 52836784 | 52837575 | 52836784 | ID=MS.gene055328.t1.exon2;Parent=MS.gene055328.t1 |
| chr1.3 | CDS | 52836784 | 52837575 | 52836784 | ID=cds.MS.gene055328.t1;Parent=MS.gene055328.t1 |
| chr1.3 | exon | 52838362 | 52838547 | 52838362 | ID=MS.gene055328.t1.exon3;Parent=MS.gene055328.t1 |
| chr1.3 | CDS | 52838362 | 52838547 | 52838362 | ID=cds.MS.gene055328.t1;Parent=MS.gene055328.t1 |
| chr1.3 | exon | 52838718 | 52838843 | 52838718 | ID=MS.gene055328.t1.exon4;Parent=MS.gene055328.t1 |
| chr1.3 | CDS | 52838718 | 52838843 | 52838718 | ID=cds.MS.gene055328.t1;Parent=MS.gene055328.t1 |
| chr1.3 | exon | 52839065 | 52839172 | 52839065 | ID=MS.gene055328.t1.exon5;Parent=MS.gene055328.t1 |
| chr1.3 | CDS | 52839065 | 52839172 | 52839065 | ID=cds.MS.gene055328.t1;Parent=MS.gene055328.t1 |
| Gene Sequence |
| Protein sequence |
