AlfalfaGEDB | MS.gene055366

M. sativa cultivar XinJiangDaYe / MS.gene055366

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055366.t1	PNX73002.1	42.7	854	184	9	105	742	1	765	4.40E-161	578.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055366.t1	Q9LKR4	32.8	177	113	4	107	278	61	236	5.7e-16	87.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055366.t1	A0A2K3L384	42.7	854	184	9	105	742	1	765	3.2e-161	578.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene055366.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055366.t1	MTR_3g080590	84.516	155	20	1	1	151	1	155	2.09e-76	244
MS.gene055366.t1	MTR_7g446520	45.078	193	91	2	94	286	81	258	1.26e-43	161
MS.gene055366.t1	MTR_0645s0010	67.593	108	29	3	284	391	24	125	8.04e-35	129
MS.gene055366.t1	MTR_7g446480	50.893	112	55	0	175	286	140	251	2.78e-30	122
MS.gene055366.t1	MTR_7g028855	42.384	151	84	1	94	241	113	263	3.35e-28	119
MS.gene055366.t1	MTR_7g446510	50.000	112	56	0	175	286	155	266	7.76e-28	115
MS.gene055366.t1	MTR_5g076070	28.916	166	115	2	98	260	50	215	3.96e-19	89.0
MS.gene055366.t1	MTR_1g070355	31.250	176	118	2	101	273	74	249	5.45e-19	91.7
MS.gene055366.t1	MTR_6g022080	25.294	170	124	1	94	260	78	247	3.04e-16	79.7
MS.gene055366.t1	MTR_8g035530	45.455	77	40	1	88	164	1	75	1.12e-15	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055366.t1	AT5G28530	32.768	177	113	4	107	278	61	236	3.71e-17	86.3
MS.gene055366.t1	AT5G28530	32.768	177	113	4	107	278	61	236	3.78e-17	86.3
MS.gene055366.t1	AT5G28530	32.768	177	113	4	107	278	61	236	4.17e-17	86.3
MS.gene055366.t1	AT5G28530	32.768	177	113	4	107	278	61	236	4.29e-17	86.3
MS.gene055366.t1	AT5G28530	32.768	177	113	4	107	278	61	236	4.29e-17	86.3
MS.gene055366.t1	AT4G38180	28.986	207	133	5	248	449	441	638	5.32e-17	86.3
MS.gene055366.t1	AT4G38180	30.403	273	167	11	23	286	4	262	9.29e-13	72.4
MS.gene055366.t1	AT4G15090	30.047	213	140	5	284	495	452	656	2.51e-16	84.0
MS.gene055366.t1	AT4G15090	30.047	213	140	5	284	495	452	656	2.51e-16	84.0
MS.gene055366.t1	AT4G15090	30.047	213	140	5	284	495	452	656	2.51e-16	84.0

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Find 138 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATCCACCATTATT+TGG	0.189323	8.1:-87090769	None:intergenic
AAAATGACCATGTTTCGTCG+AGG	0.652304	8.1:+87089830	MS.gene055366:CDS
AAACATCGCAGTGACTATTG+TGG	0.611836	8.1:+87091002	MS.gene055366:CDS
AAAGGACTTATATAATTTCA+CGG	0.493961	8.1:+87088578	MS.gene055366:CDS
AAAGTCTGATTTGCAAGAGA+TGG	0.531904	8.1:+87089747	MS.gene055366:CDS
AAAGTTTAAAGATGTCAAAA+AGG	0.436388	8.1:+87089493	MS.gene055366:CDS
AAATGACCATGTTTCGTCGA+GGG	0.581274	8.1:+87089831	MS.gene055366:CDS
AAATGATGATATAAGGGATA+TGG	0.309095	8.1:+87088107	MS.gene055366:CDS
AAATGGACATGACAAGGATA+AGG	0.461918	8.1:+87089973	MS.gene055366:CDS
AACAAATACAAGCACTAGAA+AGG	0.422563	8.1:+87090492	MS.gene055366:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTGATCCACCATTATT+TGG	-	chr8.1:87090772-87090791	None:intergenic	30.0%
AAACAATAGAGACATACAAG+TGG	+	chr8.1:87088901-87088920	MS.gene055366:intron	30.0%
AACAAATACAAGCACTAGAA+AGG	+	chr8.1:87090492-87090511	MS.gene055366:CDS	30.0%
AACAATAGAGACATACAAGT+GGG	+	chr8.1:87088902-87088921	MS.gene055366:intron	30.0%
AAGGGTTAAAATACAAGATG+GGG	+	chr8.1:87088611-87088630	MS.gene055366:CDS	30.0%
AATTATGCAAGAAATCCACA+AGG	-	chr8.1:87089343-87089362	None:intergenic	30.0%
ACAAATACAAGCACTAGAAA+GGG	+	chr8.1:87090493-87090512	MS.gene055366:CDS	30.0%
ACCTATAGAAAGAACAAGTA+TGG	+	chr8.1:87088801-87088820	MS.gene055366:intron	30.0%
ATACTTGTTCTTTCTATAGG+TGG	-	chr8.1:87088802-87088821	None:intergenic	30.0%
ATATAATTTCACGGATCATC+AGG	+	chr8.1:87088587-87088606	MS.gene055366:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	87087814	87091037	87087814	ID=MS.gene055366
chr8.1	mRNA	87087814	87091037	87087814	ID=MS.gene055366.t1;Parent=MS.gene055366
chr8.1	exon	87087814	87088663	87087814	ID=MS.gene055366.t1.exon1;Parent=MS.gene055366.t1
chr8.1	CDS	87087814	87088663	87087814	ID=cds.MS.gene055366.t1;Parent=MS.gene055366.t1
chr8.1	exon	87089300	87090240	87089300	ID=MS.gene055366.t1.exon2;Parent=MS.gene055366.t1
chr8.1	CDS	87089300	87090240	87089300	ID=cds.MS.gene055366.t1;Parent=MS.gene055366.t1
chr8.1	exon	87090337	87090558	87090337	ID=MS.gene055366.t1.exon3;Parent=MS.gene055366.t1
chr8.1	CDS	87090337	87090558	87090337	ID=cds.MS.gene055366.t1;Parent=MS.gene055366.t1
chr8.1	exon	87090649	87090879	87090649	ID=MS.gene055366.t1.exon4;Parent=MS.gene055366.t1
chr8.1	CDS	87090649	87090879	87090649	ID=cds.MS.gene055366.t1;Parent=MS.gene055366.t1
chr8.1	exon	87090966	87091037	87090966	ID=MS.gene055366.t1.exon5;Parent=MS.gene055366.t1
chr8.1	CDS	87090966	87091037	87090966	ID=cds.MS.gene055366.t1;Parent=MS.gene055366.t1

Gene Sequence

>MS.gene055366

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTATATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAACAGTGTTAATGATGTTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAACAACGATGTTCGTATTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAAATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATGTATTATTTGCAAAATACCACTGGTTTGAAGTAAGAAAGGATGATGTGAAACGTGATTCTAATGGGAACATTATCATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCAAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTGTTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACAGCAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATCAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATACAAGATGGGGATACTTTTGCTACTTTGAGTTATTTCCAAGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAGAGTTGTGTTTCCAAATACAAGGCATCACCTTTGCGCCTGGCATTTGCATCGAAATGTTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAAAATTTATCGGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAATAGCCTTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTGTTTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCATTGAACGAGATGAAGATGTGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGATGTAGCTTTTTCGGTATACCTTGACAAGTTGCAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAATGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCGTTCAATAGTCTATGTAATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTCTAGAAGGGATTTATAGTCTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACAAGGATAAGGGCAGTAAATTTGTTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACCGAGGACAAGATGTTGTTCTAATTGTAGAAATCCTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGTCGTGTCTGAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTGATAATGAATCAAAAAGTTTAAGTGTAAGTTGATTATAGTGCATTTCTTGTTATTTTATTTGTTTAATCTGCAAATGAATTTGAAATTGTATATGATATTTTGGTTTATTTCATGTCCAGCTGTCTATGAGTAATGATATAAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACGAGATGTTGAGAAAAGCACTGGTATTACACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATGTAATACCTTTGTTATAGTATATTTGCTGAAAATTGTGTTGCTTTGGAATATTATATGTTTACTTCTTTATCTTGTTTTAATTGTTGTAGAATGGTGTGACCCGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTATGGGCTGCCAAATAATGGTGGATCAGTTTTTCCACAATTCCCTCCGACAACTACCCTCTCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTCCGAGTTATACACCGGTGAGTATTTTGATTGTTTAGTTTATTAATTGTATTTAATTTGATTATTTTTAATACTTCTGATAATTTTCCTATATTTAAAACAGTTTATGAGTGCGTTGAAGATTGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAAAACATTGA

Protein sequence

>MS.gene055366.t1

MSTYSEATLPFDVYSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTEDIKVNSNNDVRIDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTNDDIRDMEFNTEDEAIKFYVLFAKYHWFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDGKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSVFKPSHNHELAPLRFVHLMPNYSKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIQDGDTFATLSYFQVNSFIKKYVRHKNSLVDFLHNFERALKEYRHNELLFDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVIERDEDVDGNIVIFKVNVFGKKDVAFSVYLDKLQTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKNDHISSFASQEGNDEKMTMFRRGALAAAFNSLCNVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDKDKGSKFVASDKANKFVANDPLMVNVKGARRSKKSTPRTRCCSNCRNPGHTIRTCPELAGIGVVSEDQGEKASPIESDNESKSLSLSMSNDINDDIHSVAVSNGGRDVEKSTGITRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTRDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGLPNNGGSVFPQFPPTTTLSSHSNTALHTGTHNVPSYTPFMSALKIVELLAKHRSDYCGPKH