AlfalfaGEDB | MS.gene055969

M. sativa cultivar XinJiangDaYe / MS.gene055969

KEGG: K17442
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055969.t1	AES81523.1	68.7	179	27	3	9	186	11	161	1.70E-58	235.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055969.t1	G7KWB3	68.7	179	27	3	9	186	11	161	1.2e-58	235.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene055969.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055969.t1	MTR_7g093700	66.667	189	32	4	1	186	1	161	2.38e-70	211
MS.gene055969.t1	MTR_7g093670	87.805	82	9	1	106	186	1	82	8.62e-46	145
MS.gene055969.t1	MTR_7g093690	54.545	132	43	5	70	186	7	136	4.73e-30	107
MS.gene055969.t1	MTR_3g011210	40.458	131	50	4	70	175	6	133	2.60e-17	74.7
MS.gene055969.t1	MTR_7g093660	53.247	77	22	2	123	186	1	76	4.77e-12	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 43 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGCACAAGATCTTTCT+TGG	0.245892	7.4:-15336460	MS.gene055969:CDS
AACAACATGGTGTGTGATGA+AGG	0.556950	7.4:+15336296	None:intergenic
AACATGGTGTGTGATGAAGG+TGG	0.787924	7.4:+15336299	None:intergenic
AACCTCTGGTATAGGCCTCA+TGG	0.524083	7.4:+15336232	None:intergenic
AATAATATTGATGGATCTTT+GGG	0.232329	7.4:-15336179	MS.gene055969:CDS
ACAATTGGAACCTCTGGTAT+AGG	0.433089	7.4:+15336224	None:intergenic
ACACAATTTGCAACATAAAT+CGG	0.316739	7.4:-15336424	MS.gene055969:CDS
ACCACCTTCATCCATCCATG+AGG	0.719012	7.4:-15336247	MS.gene055969:CDS
ACCATGTTGTTTCCTATTCA+TGG	0.300234	7.4:-15336284	MS.gene055969:CDS
ACCGCTGGTACTTCTTCAAT+TGG	0.421292	7.4:+15336107	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACAATTTGCAACATAAATC+GGG	-	chr7.4:15336231-15336250	MS.gene055969:CDS	30.0%
TGTAAATCTTGTGATGTTGT+TGG	+	chr7.4:15336298-15336317	None:intergenic	30.0%
AAACTGCACAAGATCTTTCT+TGG	-	chr7.4:15336194-15336213	MS.gene055969:CDS	35.0%
AGATCTTCTTTGTACCACAT+TGG	-	chr7.4:15336319-15336338	MS.gene055969:CDS	35.0%
GTTAGAGTAAGAACAAGAGT+AGG	+	chr7.4:15336133-15336152	None:intergenic	35.0%
GTTGGTATGAATGTTTGTGA+TGG	+	chr7.4:15336280-15336299	None:intergenic	35.0%
TAATTACCGCTTCCATGAAT+AGG	+	chr7.4:15336385-15336404	None:intergenic	35.0%
TCAATTGGAGCAGAATCAAT+CGG	+	chr7.4:15336535-15336554	None:intergenic	35.0%
TCCATGAATAGGAAACAACA+TGG	+	chr7.4:15336374-15336393	None:intergenic	35.0%
TGCAAATTGTGTATGAGCTT+TGG	+	chr7.4:15336222-15336241	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	15336058	15336618	15336058	ID=MS.gene055969
chr7.4	mRNA	15336058	15336618	15336058	ID=MS.gene055969.t1;Parent=MS.gene055969
chr7.4	exon	15336058	15336618	15336058	ID=MS.gene055969.t1.exon1;Parent=MS.gene055969.t1
chr7.4	CDS	15336058	15336618	15336058	ID=cds.MS.gene055969.t1;Parent=MS.gene055969.t1

Gene Sequence

>MS.gene055969

ATGTTGTTAGATGTTCAACTCTTATCTTATGATGAGAGCAGTACTGTCAGCAGCAACAATACTAACGTTGCTCCTACTCTTGTTCTTACTCTAACTCCAATCGAATTTCGATGCAACCATTGCCATAACACCTTCAAAACTGCACAAGATCTTTCTTGGCACCAAAGCTCATACACAATTTGCAACATAAATCGGGCTTTATTGAGACAAAACAACACACCATCACAAACATTCATACCAACAACATCACAAGATTTACAAAGATCTTCTTTGTACCACATTGGACCACCATCTCCACCACCTTCATCACACACCATGTTGTTTCCTATTCATGGAAGCGGTAATTATGACCACCTTCATCCATCCATGAGGCCTATACCAGAGGTTCCAATTGTCTCTCGTACTCGTCATGATTACAATAATATTGATGGATCTTTGGGGAGAACAATGGATCTTATTTCTCTGATCCACAAGCCGATTGATTCTGCTCCAATTGAAGAAGTACCAGCGGTCTGGCAGGATGGAAACAACAATGACATCGACCTTGATTTGAAGCTTTAG

Protein sequence

>MS.gene055969.t1

MLLDVQLLSYDESSTVSSNNTNVAPTLVLTLTPIEFRCNHCHNTFKTAQDLSWHQSSYTICNINRALLRQNNTPSQTFIPTTSQDLQRSSLYHIGPPSPPPSSHTMLFPIHGSGNYDHLHPSMRPIPEVPIVSRTRHDYNNIDGSLGRTMDLISLIHKPIDSAPIEEVPAVWQDGNNNDIDLDLKL