AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056112

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056112.t1 MTR_7g445710 90.424 543 51 1 1 542 1 543 0.0 984
MS.gene056112.t1 MTR_7g445530 89.864 513 51 1 1 512 1 513 0.0 922
MS.gene056112.t1 MTR_7g450730 78.821 543 76 5 1 542 1 505 0.0 839
MS.gene056112.t1 MTR_7g445600 86.667 225 30 0 7 231 3 227 1.46e-131 387
MS.gene056112.t1 MTR_7g445600 62.130 169 13 1 344 512 239 356 3.66e-58 197
MS.gene056112.t1 MTR_5g013420 44.280 542 210 11 71 542 570 1089 6.98e-131 408
MS.gene056112.t1 MTR_7g445810 74.552 279 50 3 1 263 1 274 1.14e-130 382
MS.gene056112.t1 MTR_5g013420 44.096 542 211 11 71 542 570 1089 1.69e-129 404
MS.gene056112.t1 MTR_4g010830 41.929 539 226 10 71 542 462 980 2.43e-123 385
MS.gene056112.t1 MTR_4g010550 41.201 483 192 12 110 542 24 464 1.44e-105 325
MS.gene056112.t1 MTR_1g048950 32.168 572 251 16 61 542 9 533 5.98e-70 234
MS.gene056112.t1 MTR_3g011440 31.627 547 263 19 78 537 137 659 3.58e-65 224
MS.gene056112.t1 MTR_7g084090 31.311 511 254 13 112 542 264 757 5.50e-65 225
MS.gene056112.t1 MTR_8g042750 30.560 589 289 23 43 537 121 683 5.94e-63 219
MS.gene056112.t1 MTR_6g061270 31.898 511 250 15 112 542 202 694 2.09e-60 212
MS.gene056112.t1 MTR_8g070075 32.421 475 229 16 110 511 293 748 2.21e-60 213
MS.gene056112.t1 MTR_8g070070 31.579 475 233 16 110 511 300 755 2.15e-57 204
MS.gene056112.t1 MTR_7g088370 30.556 540 255 20 79 537 200 700 9.12e-57 202
MS.gene056112.t1 MTR_8g071030 30.867 473 239 13 110 511 280 735 1.10e-54 197
MS.gene056112.t1 MTR_1g035420 29.707 478 249 13 110 518 192 651 9.62e-53 190
MS.gene056112.t1 MTR_6g061200 30.588 510 229 15 112 542 202 665 1.74e-52 189
MS.gene056112.t1 MTR_6g044690 28.908 467 245 14 113 511 115 562 8.56e-50 180
MS.gene056112.t1 MTR_0376s0030 27.841 528 249 18 72 511 77 560 1.47e-44 166
MS.gene056112.t1 MTR_6g043960 28.188 447 253 14 113 511 54 480 4.68e-43 160
MS.gene056112.t1 MTR_7g052480 32.781 302 158 9 275 542 266 556 4.79e-40 153
MS.gene056112.t1 MTR_1g035400 27.950 483 255 15 110 519 109 571 1.56e-38 149
MS.gene056112.t1 MTR_2g054460 26.196 439 244 16 113 511 64 462 3.20e-33 132
MS.gene056112.t1 MTR_7g084090 28.075 374 183 10 112 407 264 629 1.59e-30 126
MS.gene056112.t1 MTR_8g078490 38.384 198 86 6 347 542 1090 1253 2.48e-29 124
MS.gene056112.t1 MTR_4g132610 35.500 200 89 5 347 542 884 1047 2.38e-27 117
MS.gene056112.t1 MTR_5g018850 34.848 198 93 5 347 542 1344 1507 9.73e-27 115
MS.gene056112.t1 MTR_8g078505 35.079 191 89 5 347 537 378 533 5.72e-25 108
MS.gene056112.t1 MTR_1g069570 31.429 210 102 7 334 537 568 741 3.48e-18 88.6
MS.gene056112.t1 MTR_1g080340 32.057 209 109 9 334 540 407 584 4.18e-18 88.2
MS.gene056112.t1 MTR_7g098390 30.476 210 104 9 334 537 524 697 3.81e-13 72.8
MS.gene056112.t1 MTR_6g027690 25.225 222 124 9 321 541 239 419 1.56e-11 67.0
MS.gene056112.t1 MTR_1g069570 31.690 142 59 5 334 470 568 676 2.76e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056112.t1 AT2G35160 41.012 573 215 16 44 542 235 758 1.08e-116 362
MS.gene056112.t1 AT2G35160 41.012 573 215 16 44 542 271 794 2.30e-116 362
MS.gene056112.t1 AT2G35160 41.012 573 215 16 44 542 271 794 2.30e-116 362
MS.gene056112.t1 AT2G35160 41.012 573 215 16 44 542 271 794 2.30e-116 362
MS.gene056112.t1 AT2G35160 41.012 573 215 16 44 542 271 794 2.30e-116 362
MS.gene056112.t1 AT2G22740 40.596 537 227 14 82 542 270 790 4.81e-109 343
MS.gene056112.t1 AT2G22740 40.596 537 227 14 82 542 270 790 4.81e-109 343
MS.gene056112.t1 AT5G13960 32.794 494 240 14 127 542 11 490 6.63e-63 214
MS.gene056112.t1 AT5G13960 32.794 494 240 14 127 542 145 624 1.65e-62 216
MS.gene056112.t1 AT1G73100 29.401 568 307 19 41 537 120 664 3.04e-58 206
MS.gene056112.t1 AT5G04940 30.833 480 242 16 127 537 207 665 3.16e-56 200
MS.gene056112.t1 AT5G04940 30.833 480 242 16 127 537 207 665 3.16e-56 200
MS.gene056112.t1 AT2G33290 29.043 575 306 18 22 525 104 647 2.16e-50 184
MS.gene056112.t1 AT2G33290 29.043 575 306 18 22 525 104 647 2.16e-50 184
MS.gene056112.t1 AT2G33290 29.043 575 306 18 22 525 104 647 2.16e-50 184
MS.gene056112.t1 AT2G33290 29.043 575 306 18 22 525 104 647 2.16e-50 184
MS.gene056112.t1 AT4G13460 28.601 486 256 13 97 511 171 636 8.82e-47 173
MS.gene056112.t1 AT4G13460 28.601 486 256 13 97 511 171 636 8.82e-47 173
MS.gene056112.t1 AT2G24740 29.622 476 233 16 130 537 309 750 8.36e-45 169
MS.gene056112.t1 AT1G17770 27.992 493 246 17 127 537 223 688 5.46e-44 166
MS.gene056112.t1 AT5G47150 37.156 218 108 6 78 273 114 324 4.08e-26 109
MS.gene056112.t1 AT5G47160 34.842 221 115 6 71 269 194 407 5.38e-22 99.0
MS.gene056112.t1 AT5G47160 34.842 221 115 6 71 269 194 407 5.38e-22 99.0
MS.gene056112.t1 AT5G47160 34.842 221 115 6 71 269 194 407 5.38e-22 99.0
MS.gene056112.t1 AT3G04380 33.014 209 106 8 334 540 257 433 1.16e-19 92.4
MS.gene056112.t1 AT3G04380 33.014 209 106 8 334 540 284 460 1.24e-19 92.4
MS.gene056112.t1 AT3G04380 33.014 209 106 8 334 540 241 417 1.25e-19 92.0
MS.gene056112.t1 AT3G04380 33.014 209 106 8 334 540 257 433 1.30e-19 92.0
MS.gene056112.t1 AT3G04380 33.014 209 106 8 334 540 268 444 1.32e-19 92.4
MS.gene056112.t1 AT3G04380 33.014 209 106 8 334 540 284 460 1.50e-19 92.0
MS.gene056112.t1 AT3G03750 28.718 195 111 5 347 541 183 349 7.57e-15 76.6
MS.gene056112.t1 AT1G76710 30.667 225 100 12 318 537 51 224 4.62e-13 72.0
MS.gene056112.t1 AT1G76710 30.667 225 100 12 318 537 51 224 5.01e-13 72.0
MS.gene056112.t1 AT1G76710 30.667 225 100 12 318 537 51 224 5.54e-13 71.6
MS.gene056112.t1 AT1G76710 30.667 225 100 12 318 537 51 224 5.54e-13 71.6
MS.gene056112.t1 AT2G05900 27.039 233 117 10 148 343 1 217 7.57e-12 67.0

Find 95 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAAAGTTGAATCTATT+TGG 0.100636 7.3:+55329245 MS.gene056112:CDS
TTTACCACTTGAAGCTTCTA+AGG 0.221245 7.3:-55329806 None:intergenic
GATGAGTATTTATTTAATAT+TGG 0.230586 7.3:+55329703 MS.gene056112:CDS
AACATTTCGAGCAAACAAAT+TGG 0.261209 7.3:-55329923 None:intergenic
AACTTTATAATAACTCTAAT+AGG 0.276626 7.3:-55329160 None:intergenic
GGAGGTAATGTCATTAATTC+TGG 0.290555 7.3:+55329085 MS.gene056112:CDS
ACGATTGATGCTGCTAAGTA+TGG 0.327893 7.3:+55329865 MS.gene056112:CDS
TTATAAAGTTGAATCTATTT+GGG 0.334586 7.3:+55329246 MS.gene056112:CDS
TCAGAGAATGCAATTCCTTC+TGG 0.338329 7.3:+55329613 MS.gene056112:CDS
GAATCATTGAAAAGCCATTC+AGG 0.342986 7.3:-55329436 None:intergenic
AATTCTGGAGAATGTGATAA+AGG 0.344872 7.3:+55329100 MS.gene056112:CDS
ACAAAAGTGTTCGTTTATAC+AGG 0.350376 7.3:+55329058 MS.gene056112:CDS
TCTCATTGATTACGTGATAA+AGG 0.363505 7.3:+55328979 MS.gene056112:CDS
TTTAAATGCAGTTTCTTGAT+TGG 0.364503 7.3:-55328662 None:intergenic
CTCGTAACATTTATCCTGAA+TGG 0.372209 7.3:+55329422 MS.gene056112:CDS
TTTCTTGATTGGTGTTTCCT+TGG 0.377579 7.3:-55328651 None:intergenic
AGGTGAGATTATTGAAGATC+AGG 0.383100 7.3:+55329657 MS.gene056112:CDS
GTGGGAAAAGGATTCATATA+TGG 0.385642 7.3:+55329753 MS.gene056112:CDS
CTTGAAATGGTTTGTGGTGA+TGG 0.386469 7.3:-55328538 None:intergenic
TTGTCACGTACTTCAATTCC+AGG 0.396373 7.3:-55328902 None:intergenic
TTCATATATGGTTGATAGTA+AGG 0.403159 7.3:+55329765 MS.gene056112:CDS
GTGGTTAATCGTATAGATTC+TGG 0.413281 7.3:+55329373 MS.gene056112:CDS
GGTGGTGGTGCACGTGGTGG+AGG 0.414640 7.3:+55329199 MS.gene056112:CDS
ACAAATTGGGAGAACAACTA+TGG 0.427505 7.3:-55329909 None:intergenic
CGTTGTGAAGATGCAACTTC+AGG 0.429661 7.3:+55328689 MS.gene056112:CDS
GGTGAGGTGTATTGTTACTA+TGG 0.435582 7.3:+55329220 MS.gene056112:CDS
TTCCTGTTGGAGACTTGAAA+TGG 0.444849 7.3:-55328551 None:intergenic
ACATTTCGAGCAAACAAATT+GGG 0.449844 7.3:-55329922 None:intergenic
ATACGATTAACCACACATAT+AGG 0.451047 7.3:-55329364 None:intergenic
GGTCTATAGTTCGTGGGAAA+AGG 0.453133 7.3:+55329741 MS.gene056112:CDS
TGGCAAGAACTCAATGTTGT+TGG 0.454774 7.3:+55328935 MS.gene056112:CDS
ATTCTGGAGAATGTGATAAA+GGG 0.456300 7.3:+55329101 MS.gene056112:CDS
AACCATTTCAAGTCTCCAAC+AGG 0.470536 7.3:+55328549 MS.gene056112:CDS
CCCTCCACTCTTAAGAGCAC+AGG 0.479558 7.3:-55329509 None:intergenic
GATCAAGTGATTGATTCAAA+TGG 0.480841 7.3:+55330048 MS.gene056112:CDS
TTTCTTTCTTCTTGAGTCAT+CGG 0.493504 7.3:-55328732 None:intergenic
AAAATTATTGGAAATGTCCC+TGG 0.496911 7.3:+55328884 MS.gene056112:CDS
TGGAGACTTGAAATGGTTTG+TGG 0.503466 7.3:-55328544 None:intergenic
CAAGACTAAGGCGAAAGGAT+GGG 0.513493 7.3:+55329582 MS.gene056112:CDS
CGTGCTCTCTGTGGAAAACT+CGG 0.520054 7.3:+55328779 MS.gene056112:CDS
ATAAAGTTTAATTCAAAGAA+CGG 0.520311 7.3:+55329175 MS.gene056112:CDS
TTTGTTAAAGATATTTCCAA+TGG 0.523563 7.3:+55329328 MS.gene056112:CDS
TACGTGACAAGTTTCAGTAT+TGG 0.524114 7.3:+55328915 MS.gene056112:CDS
AAGACGAAAGCATGTTATTG+TGG 0.528019 7.3:+55330078 MS.gene056112:CDS
TCAAGACTAAGGCGAAAGGA+TGG 0.530216 7.3:+55329581 MS.gene056112:CDS
CAAAAGTGTTCGTTTATACA+GGG 0.533398 7.3:+55329059 MS.gene056112:CDS
CACTTCGATAGGAAGCGCTT+CGG 0.539429 7.3:-55328816 None:intergenic
AGAAGCTTCAAGTGGTAAAG+AGG 0.540440 7.3:+55329810 MS.gene056112:CDS
AAGACTAAGGCGAAAGGATG+GGG 0.542189 7.3:+55329583 MS.gene056112:CDS
TTACCACTTGAAGCTTCTAA+GGG 0.542917 7.3:-55329805 None:intergenic
ATTGATGATCCATGTGATAG+TGG 0.546691 7.3:+55329835 MS.gene056112:CDS
AATTCAAAGAACGGTGGTGG+TGG 0.550993 7.3:+55329184 MS.gene056112:CDS
GGTGGTGGTGGTGCACGTGG+TGG 0.552190 7.3:+55329196 MS.gene056112:CDS
CTAAGTATGGTAACGTGGCA+AGG 0.558339 7.3:+55329878 MS.gene056112:CDS
ACTATCACATGGATCATCAA+TGG 0.565161 7.3:-55329833 None:intergenic
TCAAAGAAACACTGAAACCA+AGG 0.567849 7.3:+55328634 MS.gene056112:CDS
TCCTGTGCTCTTAAGAGTGG+AGG 0.568183 7.3:+55329508 MS.gene056112:CDS
TTTAATTCAAAGAACGGTGG+TGG 0.569178 7.3:+55329181 MS.gene056112:CDS
AACGGTGGTGGTGGTGCACG+TGG 0.573546 7.3:+55329193 MS.gene056112:CDS
TTCACAAGGTCTATAGTTCG+TGG 0.573569 7.3:+55329734 MS.gene056112:CDS
TGGTGCACGTGGTGGAGGTG+AGG 0.581579 7.3:+55329204 MS.gene056112:CDS
TCTTTCTGTAAAGTTCCTGT+TGG 0.586283 7.3:-55328564 None:intergenic
AGAATCCGTGACACTTCGAT+AGG 0.588664 7.3:-55328827 None:intergenic
TCTCTGTGGAAAACTCGGTA+AGG 0.590987 7.3:+55328784 MS.gene056112:CDS
TATTGGAAATTATATTCACA+AGG 0.594119 7.3:+55329720 MS.gene056112:CDS
AAAGTCAGCTCATTCATGCT+CGG 0.596521 7.3:-55330006 None:intergenic
TCACAAATAAAATGTCCAGA+AGG 0.599161 7.3:-55329628 None:intergenic
TGTTCCTGTGCTCTTAAGAG+TGG 0.599372 7.3:+55329505 MS.gene056112:CDS
TTTACAATGATGATGATCTG+AGG 0.599652 7.3:+55329947 MS.gene056112:CDS
GTGTTCGTTTATACAGGGGA+AGG 0.599990 7.3:+55329064 MS.gene056112:CDS
TTCGATAGGAAGCGCTTCGG+CGG 0.606825 7.3:-55328813 None:intergenic
CCTGTGCTCTTAAGAGTGGA+GGG 0.608017 7.3:+55329509 MS.gene056112:CDS
AATCTCATCAATACAGTCGA+CGG 0.610597 7.3:-55330116 None:intergenic
TTCGTTTATACAGGGGAAGG+AGG 0.611584 7.3:+55329067 MS.gene056112:CDS
CGCTTCCTATCGAAGTGTCA+CGG 0.612241 7.3:+55328822 MS.gene056112:CDS
GAGGAAAATTCACTCACGAT+GGG 0.618861 7.3:+55328858 MS.gene056112:CDS
ATGATCCATGTGATAGTGGT+AGG 0.619153 7.3:+55329839 MS.gene056112:CDS
TCACAAGGTCTATAGTTCGT+GGG 0.620772 7.3:+55329735 MS.gene056112:CDS
CACAAGGAGAGTATTGTCAA+AGG 0.629254 7.3:+55328610 MS.gene056112:CDS
GGTAACTTCCGTGCTCTCTG+TGG 0.631604 7.3:+55328770 MS.gene056112:CDS
TAATCGTATAGATTCTGGCA+AGG 0.632162 7.3:+55329378 MS.gene056112:CDS
AGAGGAAAATTCACTCACGA+TGG 0.634330 7.3:+55328857 MS.gene056112:CDS
CAACCCTTAGAAGCTTCAAG+TGG 0.647600 7.3:+55329802 MS.gene056112:CDS
TGTTCAAGAATGTCAGCACA+AGG 0.652837 7.3:+55328594 MS.gene056112:CDS
TGTCACGTACTTCAATTCCA+GGG 0.660126 7.3:-55328901 None:intergenic
AAAAGTGTTCGTTTATACAG+GGG 0.661822 7.3:+55329060 MS.gene056112:CDS
ATGGTTCGTAGTGGAAGACG+AGG 0.663527 7.3:-55328519 None:intergenic
AGAAGCTGTTCCTATATGTG+TGG 0.665038 7.3:+55329354 MS.gene056112:CDS
AACACATTTACGCCCAACAG+AGG 0.665095 7.3:-55329458 None:intergenic
TTTGTGGTGATGGTTCGTAG+TGG 0.675157 7.3:-55328528 None:intergenic
GTAAACCTACCACTATCACA+TGG 0.684159 7.3:-55329844 None:intergenic
AAGTTTAATTCAAAGAACGG+TGG 0.694907 7.3:+55329178 MS.gene056112:CDS
GCTGCATATAGCATGATGTG+TGG 0.717627 7.3:-55329973 None:intergenic
TGCTGCTAAGTATGGTAACG+TGG 0.728265 7.3:+55329873 MS.gene056112:CDS
TGGTTCGTAGTGGAAGACGA+GGG 0.748439 7.3:-55328518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGATTTTAAATTTTGTT+TGG + chr7.3:55329282-55329301 MS.gene056112:CDS 10.0%
!! AACTTTATAATAACTCTAAT+AGG - chr7.3:55329163-55329182 None:intergenic 15.0%
!! ATAAAGTTTAATTCAAAGAA+CGG + chr7.3:55329175-55329194 MS.gene056112:CDS 15.0%
!! GATGAGTATTTATTTAATAT+TGG + chr7.3:55329703-55329722 MS.gene056112:CDS 15.0%
!! TTATAAAGTTGAATCTATTT+GGG + chr7.3:55329246-55329265 MS.gene056112:CDS 15.0%
!! TTTATAAAGTTGAATCTATT+TGG + chr7.3:55329245-55329264 MS.gene056112:CDS 15.0%
!! AAGAAAGTAAAAACTACATT+AGG + chr7.3:55328749-55328768 MS.gene056112:CDS 20.0%
!! AATCTATTTGGGTAAAAAAA+GGG + chr7.3:55329257-55329276 MS.gene056112:CDS 20.0%
!! TATTGGAAATTATATTCACA+AGG + chr7.3:55329720-55329739 MS.gene056112:CDS 20.0%
!! TTAACAAAAAATTTCTGATC+AGG - chr7.3:55329316-55329335 None:intergenic 20.0%
!! TTTGTTAAAGATATTTCCAA+TGG + chr7.3:55329328-55329347 MS.gene056112:CDS 20.0%
!!! CATTTTATTTGTGAGTATTT+AGG + chr7.3:55329637-55329656 MS.gene056112:CDS 20.0%
! CGAGTAATGTATTGAAAAAA+TGG - chr7.3:55329406-55329425 None:intergenic 25.0%
! GAATCTATTTGGGTAAAAAA+AGG + chr7.3:55329256-55329275 MS.gene056112:CDS 25.0%
! TTTAAATGCAGTTTCTTGAT+TGG - chr7.3:55328665-55328684 None:intergenic 25.0%
!!! TCTTCAAATTTTCAAGACTA+AGG + chr7.3:55329570-55329589 MS.gene056112:CDS 25.0%
!!! TTCATATATGGTTGATAGTA+AGG + chr7.3:55329765-55329784 MS.gene056112:CDS 25.0%
!!! TTCTTGTCATTTTGATGATA+TGG + chr7.3:55329030-55329049 MS.gene056112:CDS 25.0%
AAAATTATTGGAAATGTCCC+TGG + chr7.3:55328884-55328903 MS.gene056112:CDS 30.0%
AACATTTCGAGCAAACAAAT+TGG - chr7.3:55329926-55329945 None:intergenic 30.0%
AAGTTTAATTCAAAGAACGG+TGG + chr7.3:55329178-55329197 MS.gene056112:CDS 30.0%
ACATTTCGAGCAAACAAATT+GGG - chr7.3:55329925-55329944 None:intergenic 30.0%
ATACGATTAACCACACATAT+AGG - chr7.3:55329367-55329386 None:intergenic 30.0%
CACGATGGGAAAAAAATTAT+TGG + chr7.3:55328872-55328891 MS.gene056112:CDS 30.0%
TCACAAATAAAATGTCCAGA+AGG - chr7.3:55329631-55329650 None:intergenic 30.0%
TTTCTTTCTTCTTGAGTCAT+CGG - chr7.3:55328735-55328754 None:intergenic 30.0%
! AATTCTGGAGAATGTGATAA+AGG + chr7.3:55329100-55329119 MS.gene056112:CDS 30.0%
! ATTCTGGAGAATGTGATAAA+GGG + chr7.3:55329101-55329120 MS.gene056112:CDS 30.0%
! GATCAAGTGATTGATTCAAA+TGG + chr7.3:55330048-55330067 MS.gene056112:CDS 30.0%
! TCTCATTGATTACGTGATAA+AGG + chr7.3:55328979-55328998 MS.gene056112:CDS 30.0%
! TTTACAATGATGATGATCTG+AGG + chr7.3:55329947-55329966 MS.gene056112:CDS 30.0%
! TTTTCAATGATTCCTCTGTT+GGG + chr7.3:55329446-55329465 MS.gene056112:CDS 30.0%
!! AAAAGTGTTCGTTTATACAG+GGG + chr7.3:55329060-55329079 MS.gene056112:CDS 30.0%
!! ACAAAAGTGTTCGTTTATAC+AGG + chr7.3:55329058-55329077 MS.gene056112:CDS 30.0%
!! CAAAAGTGTTCGTTTATACA+GGG + chr7.3:55329059-55329078 MS.gene056112:CDS 30.0%
ACAAATTGGGAGAACAACTA+TGG - chr7.3:55329912-55329931 None:intergenic 35.0%
ACTATCACATGGATCATCAA+TGG - chr7.3:55329836-55329855 None:intergenic 35.0%
AGGTGAGATTATTGAAGATC+AGG + chr7.3:55329657-55329676 MS.gene056112:CDS 35.0%
CTCGTAACATTTATCCTGAA+TGG + chr7.3:55329422-55329441 MS.gene056112:CDS 35.0%
GAATCATTGAAAAGCCATTC+AGG - chr7.3:55329439-55329458 None:intergenic 35.0%
GGAGGTAATGTCATTAATTC+TGG + chr7.3:55329085-55329104 MS.gene056112:CDS 35.0%
GTGGGAAAAGGATTCATATA+TGG + chr7.3:55329753-55329772 MS.gene056112:CDS 35.0%
GTGGTTAATCGTATAGATTC+TGG + chr7.3:55329373-55329392 MS.gene056112:CDS 35.0%
TAATCGTATAGATTCTGGCA+AGG + chr7.3:55329378-55329397 MS.gene056112:CDS 35.0%
TACGTGACAAGTTTCAGTAT+TGG + chr7.3:55328915-55328934 MS.gene056112:CDS 35.0%
TCAAAGAAACACTGAAACCA+AGG + chr7.3:55328634-55328653 MS.gene056112:CDS 35.0%
TCTTTCTGTAAAGTTCCTGT+TGG - chr7.3:55328567-55328586 None:intergenic 35.0%
TTACCACTTGAAGCTTCTAA+GGG - chr7.3:55329808-55329827 None:intergenic 35.0%
TTTAATTCAAAGAACGGTGG+TGG + chr7.3:55329181-55329200 MS.gene056112:CDS 35.0%
TTTACCACTTGAAGCTTCTA+AGG - chr7.3:55329809-55329828 None:intergenic 35.0%
! AAGACGAAAGCATGTTATTG+TGG + chr7.3:55330078-55330097 MS.gene056112:CDS 35.0%
! ATTGATGATCCATGTGATAG+TGG + chr7.3:55329835-55329854 MS.gene056112:CDS 35.0%
! CTTTTCAATGATTCCTCTGT+TGG + chr7.3:55329445-55329464 MS.gene056112:CDS 35.0%
! TCACGGATTCTAAAAAACAG+AGG + chr7.3:55328839-55328858 MS.gene056112:CDS 35.0%
! TTTCTTGATTGGTGTTTCCT+TGG - chr7.3:55328654-55328673 None:intergenic 35.0%
!! ATTTTCAAGACTAAGGCGAA+AGG + chr7.3:55329577-55329596 MS.gene056112:CDS 35.0%
AAAGTCAGCTCATTCATGCT+CGG - chr7.3:55330009-55330028 None:intergenic 40.0%
ACGATTGATGCTGCTAAGTA+TGG + chr7.3:55329865-55329884 MS.gene056112:CDS 40.0%
AGAAGCTGTTCCTATATGTG+TGG + chr7.3:55329354-55329373 MS.gene056112:CDS 40.0%
AGAAGCTTCAAGTGGTAAAG+AGG + chr7.3:55329810-55329829 MS.gene056112:CDS 40.0%
AGAGGAAAATTCACTCACGA+TGG + chr7.3:55328857-55328876 MS.gene056112:CDS 40.0%
GAGGAAAATTCACTCACGAT+GGG + chr7.3:55328858-55328877 MS.gene056112:CDS 40.0%
GGTGAGGTGTATTGTTACTA+TGG + chr7.3:55329220-55329239 MS.gene056112:CDS 40.0%
GTAAACCTACCACTATCACA+TGG - chr7.3:55329847-55329866 None:intergenic 40.0%
TCACAAGGTCTATAGTTCGT+GGG + chr7.3:55329735-55329754 MS.gene056112:CDS 40.0%
TCAGAGAATGCAATTCCTTC+TGG + chr7.3:55329613-55329632 MS.gene056112:CDS 40.0%
TGGAGACTTGAAATGGTTTG+TGG - chr7.3:55328547-55328566 None:intergenic 40.0%
TGGCAAGAACTCAATGTTGT+TGG + chr7.3:55328935-55328954 MS.gene056112:CDS 40.0%
TGTCACGTACTTCAATTCCA+GGG - chr7.3:55328904-55328923 None:intergenic 40.0%
TGTTCAAGAATGTCAGCACA+AGG + chr7.3:55328594-55328613 MS.gene056112:CDS 40.0%
TTCACAAGGTCTATAGTTCG+TGG + chr7.3:55329734-55329753 MS.gene056112:CDS 40.0%
TTCCTGTTGGAGACTTGAAA+TGG - chr7.3:55328554-55328573 None:intergenic 40.0%
TTGTCACGTACTTCAATTCC+AGG - chr7.3:55328905-55328924 None:intergenic 40.0%
! AACCATTTCAAGTCTCCAAC+AGG + chr7.3:55328549-55328568 MS.gene056112:CDS 40.0%
! AGGAACAGCTTCTTTTCCAT+TGG - chr7.3:55329347-55329366 None:intergenic 40.0%
! CTTGAAATGGTTTGTGGTGA+TGG - chr7.3:55328541-55328560 None:intergenic 40.0%
!! ATGATCCATGTGATAGTGGT+AGG + chr7.3:55329839-55329858 MS.gene056112:CDS 40.0%
!! CACAAGGAGAGTATTGTCAA+AGG + chr7.3:55328610-55328629 MS.gene056112:CDS 40.0%
AACACATTTACGCCCAACAG+AGG - chr7.3:55329461-55329480 None:intergenic 45.0%
AAGACTAAGGCGAAAGGATG+GGG + chr7.3:55329583-55329602 MS.gene056112:CDS 45.0%
AGAATCCGTGACACTTCGAT+AGG - chr7.3:55328830-55328849 None:intergenic 45.0%
CAACCCTTAGAAGCTTCAAG+TGG + chr7.3:55329802-55329821 MS.gene056112:CDS 45.0%
CAAGACTAAGGCGAAAGGAT+GGG + chr7.3:55329582-55329601 MS.gene056112:CDS 45.0%
CGTTGTGAAGATGCAACTTC+AGG + chr7.3:55328689-55328708 MS.gene056112:CDS 45.0%
GCTGCATATAGCATGATGTG+TGG - chr7.3:55329976-55329995 None:intergenic 45.0%
GGTCTATAGTTCGTGGGAAA+AGG + chr7.3:55329741-55329760 MS.gene056112:CDS 45.0%
GTGTTCGTTTATACAGGGGA+AGG + chr7.3:55329064-55329083 MS.gene056112:CDS 45.0%
TCAAGACTAAGGCGAAAGGA+TGG + chr7.3:55329581-55329600 MS.gene056112:CDS 45.0%
TCTCTGTGGAAAACTCGGTA+AGG + chr7.3:55328784-55328803 MS.gene056112:CDS 45.0%
TGTTCCTGTGCTCTTAAGAG+TGG + chr7.3:55329505-55329524 MS.gene056112:CDS 45.0%
TTCGTTTATACAGGGGAAGG+AGG + chr7.3:55329067-55329086 MS.gene056112:CDS 45.0%
! AATTCAAAGAACGGTGGTGG+TGG + chr7.3:55329184-55329203 MS.gene056112:CDS 45.0%
! CTAAGTATGGTAACGTGGCA+AGG + chr7.3:55329878-55329897 MS.gene056112:CDS 45.0%
! TGCTGCTAAGTATGGTAACG+TGG + chr7.3:55329873-55329892 MS.gene056112:CDS 45.0%
!! TTTGTGGTGATGGTTCGTAG+TGG - chr7.3:55328531-55328550 None:intergenic 45.0%
CCTGTGCTCTTAAGAGTGGA+GGG + chr7.3:55329509-55329528 MS.gene056112:CDS 50.0%
CGTGCTCTCTGTGGAAAACT+CGG + chr7.3:55328779-55328798 MS.gene056112:CDS 50.0%
TCCTGTGCTCTTAAGAGTGG+AGG + chr7.3:55329508-55329527 MS.gene056112:CDS 50.0%
! ATGGTTCGTAGTGGAAGACG+AGG - chr7.3:55328522-55328541 None:intergenic 50.0%
! CGAGTTTTCCACAGAGAGCA+CGG - chr7.3:55328781-55328800 None:intergenic 50.0%
! CGCTTCCTATCGAAGTGTCA+CGG + chr7.3:55328822-55328841 MS.gene056112:CDS 50.0%
! TGGTTCGTAGTGGAAGACGA+GGG - chr7.3:55328521-55328540 None:intergenic 50.0%
!! CACTTCGATAGGAAGCGCTT+CGG - chr7.3:55328819-55328838 None:intergenic 50.0%
GGTAACTTCCGTGCTCTCTG+TGG + chr7.3:55328770-55328789 MS.gene056112:CDS 55.0%
! CCCTCCACTCTTAAGAGCAC+AGG - chr7.3:55329512-55329531 None:intergenic 55.0%
!! TTCGATAGGAAGCGCTTCGG+CGG - chr7.3:55328816-55328835 None:intergenic 55.0%
! TGGTGCACGTGGTGGAGGTG+AGG + chr7.3:55329204-55329223 MS.gene056112:CDS 65.0%
!! AACGGTGGTGGTGGTGCACG+TGG + chr7.3:55329193-55329212 MS.gene056112:CDS 65.0%
! GGTGGTGGTGCACGTGGTGG+AGG + chr7.3:55329199-55329218 MS.gene056112:CDS 70.0%
!! GGTGGTGGTGGTGCACGTGG+TGG + chr7.3:55329196-55329215 MS.gene056112:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 55328503 55330131 55328503 ID=MS.gene056112
chr7.3 mRNA 55328503 55330131 55328503 ID=MS.gene056112.t1;Parent=MS.gene056112
chr7.3 exon 55328503 55330131 55328503 ID=MS.gene056112.t1.exon1;Parent=MS.gene056112.t1
chr7.3 CDS 55328503 55330131 55328503 ID=cds.MS.gene056112.t1;Parent=MS.gene056112.t1
Gene Sequence

>MS.gene056112

ATGACTAAGACGAAGCCCTCGTCTTCCACTACGAACCATCACCACAAACCATTTCAAGTCTCCAACAGGAACTTTACAGAAAGAGCATTGTTGTTCAAGAATGTCAGCACAAGGAGAGTATTGTCAAAGGTTCAAAGAAACACTGAAACCAAGGAAACACCAATCAAGAAACTGCATTTAAAACGTCGTTGTGAAGATGCAACTTCAGGTAACAAGTCGTCTTTGACTTCCGATGACTCAAGAAGAAAGAAAGTAAAAACTACATTAGGTAACTTCCGTGCTCTCTGTGGAAAACTCGGTAAGGAACTTACCGCCGAAGCGCTTCCTATCGAAGTGTCACGGATTCTAAAAAACAGAGGAAAATTCACTCACGATGGGAAAAAAATTATTGGAAATGTCCCTGGAATTGAAGTACGTGACAAGTTTCAGTATTGGCAAGAACTCAATGTTGTTGGTCTTCATCGTCAGAATCTAAGTCTCATTGATTACGTGATAAAGGATGATAATTTAATTGCAACAAGCATTGTTTCTTGTCATTTTGATGATATGGATGATACAAAAGTGTTCGTTTATACAGGGGAAGGAGGTAATGTCATTAATTCTGGAGAATGTGATAAAGGGAATCTTGCTCTGATGAATAGTTTTGCTGTTAAGAATCCTATTAGAGTTATTATAAAGTTTAATTCAAAGAACGGTGGTGGTGGTGCACGTGGTGGAGGTGAGGTGTATTGTTACTATGGTCTTTATAAAGTTGAATCTATTTGGGTAAAAAAAGGGAAATTAGATTTTAAATTTTGTTTGGTTAGATTGCCTGATCAGAAATTTTTTGTTAAAGATATTTCCAATGGAAAAGAAGCTGTTCCTATATGTGTGGTTAATCGTATAGATTCTGGCAAGGTTCCATTTTTTCAATACATTACTCGTAACATTTATCCTGAATGGCTTTTCAATGATTCCTCTGTTGGGCGTAAATGTGTTGATCATTATTCTGATTCAATGAAATGTTCCTGTGCTCTTAAGAGTGGAGGGAAAATTACTAGAGTACAGAAAAATGAGATTAAATTTAATCTTCAAATTTTCAAGACTAAGGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTCCTTCTGGACATTTTATTTGTGAGTATTTAGGTGAGATTATTGAAGATCAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATTTAATATTGGAAATTATATTCACAAGGTCTATAGTTCGTGGGAAAAGGATTCATATATGGTTGATAGTAAGGAGATGAGTTCATATCAACCCTTAGAAGCTTCAAGTGGTAAAGAGGCCATTGATGATCCATGTGATAGTGGTAGGTTTACGATTGATGCTGCTAAGTATGGTAACGTGGCAAGGTTTATCAACCATAGTTGTTCTCCCAATTTGTTTGCTCGAAATGTTCTTTACAATGATGATGATCTGAGGATTCCACACATCATGCTATATGCAGCTGAGAACATTCCGAGCATGAATGAGCTGACTTTGAATTACAATTACAAGATCGATCAAGTGATTGATTCAAATGGAAATTTAAAGACGAAAGCATGTTATTGTGGAGCTTCTGAATGCATCCGTCGACTGTATTGA
Protein sequence

>MS.gene056112.t1

MTKTKPSSSTTNHHHKPFQVSNRNFTERALLFKNVSTRRVLSKVQRNTETKETPIKKLHLKRRCEDATSGNKSSLTSDDSRRKKVKTTLGNFRALCGKLGKELTAEALPIEVSRILKNRGKFTHDGKKIIGNVPGIEVRDKFQYWQELNVVGLHRQNLSLIDYVIKDDNLIATSIVSCHFDDMDDTKVFVYTGEGGNVINSGECDKGNLALMNSFAVKNPIRVIIKFNSKNGGGGARGGGEVYCYYGLYKVESIWVKKGKLDFKFCLVRLPDQKFFVKDISNGKEAVPICVVNRIDSGKVPFFQYITRNIYPEWLFNDSSVGRKCVDHYSDSMKCSCALKSGGKITRVQKNEIKFNLQIFKTKAKGWGVRSENAIPSGHFICEYLGEIIEDQEALKIVDNDEYLFNIGNYIHKVYSSWEKDSYMVDSKEMSSYQPLEASSGKEAIDDPCDSGRFTIDAAKYGNVARFINHSCSPNLFARNVLYNDDDLRIPHIMLYAAENIPSMNELTLNYNYKIDQVIDSNGNLKTKACYCGASECIRRLY