AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056135

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056135.t1 MTR_7g451170 74.900 251 34 4 15 239 165 412 3.08e-124 358
MS.gene056135.t1 MTR_7g037260 63.241 253 56 5 13 239 117 358 8.27e-98 290
MS.gene056135.t1 MTR_7g037130 63.200 250 55 5 16 239 120 358 8.85e-96 284
MS.gene056135.t1 MTR_4g088015 64.255 235 55 4 31 239 211 442 7.11e-88 267
MS.gene056135.t1 MTR_7g035350 48.400 250 85 6 13 222 197 442 2.60e-61 199
MS.gene056135.t1 MTR_1g057980 46.371 248 85 6 16 223 55 294 5.18e-55 178
MS.gene056135.t1 MTR_7g450950 42.857 231 85 9 11 213 126 337 7.08e-38 135
MS.gene056135.t1 MTR_7g035300 37.288 236 81 8 16 238 51 232 1.92e-32 118
MS.gene056135.t1 MTR_3g077650 46.753 154 60 3 35 166 175 328 9.51e-32 120
MS.gene056135.t1 MTR_4g105660 48.361 122 41 3 40 139 179 300 5.49e-29 113
MS.gene056135.t1 MTR_3g463400 43.796 137 44 5 40 146 132 265 4.48e-26 105
MS.gene056135.t1 MTR_5g070020 44.961 129 41 4 40 141 121 246 4.19e-24 99.0
MS.gene056135.t1 MTR_5g049190 44.604 139 46 4 38 151 16 148 2.99e-23 94.7
MS.gene056135.t1 MTR_4g019370 60.870 46 18 0 74 119 93 138 3.44e-14 71.2
MS.gene056135.t1 MTR_3g110028 50.847 59 28 1 61 119 128 185 6.26e-14 71.2
MS.gene056135.t1 MTR_1g026870 50.847 59 28 1 61 119 128 185 6.43e-14 71.2
MS.gene056135.t1 MTR_3g101290 35.514 107 43 4 37 119 33 137 2.63e-13 67.4
MS.gene056135.t1 MTR_7g061330 52.542 59 27 1 61 119 156 213 3.59e-13 68.9
MS.gene056135.t1 MTR_7g461410 52.542 59 27 1 61 119 156 213 3.59e-13 68.9
MS.gene056135.t1 MTR_7g061330 50.847 59 26 1 61 119 122 177 4.90e-13 68.2
MS.gene056135.t1 MTR_5g082910 51.724 58 18 1 58 115 68 115 1.12e-12 66.2
MS.gene056135.t1 MTR_4g094982 50.877 57 27 1 63 119 50 105 2.22e-12 65.5
MS.gene056135.t1 MTR_4g073420 50.877 57 25 1 71 127 67 120 2.06e-11 62.8
MS.gene056135.t1 MTR_7g110830 28.758 153 93 5 71 219 67 207 2.83e-11 62.8
MS.gene056135.t1 MTR_5g016510 47.368 57 29 1 63 119 50 105 3.00e-11 62.4
MS.gene056135.t1 MTR_3g052450 31.293 147 70 5 1 119 1 144 3.44e-11 62.8
MS.gene056135.t1 MTR_5g010650 58.140 43 18 0 71 113 162 204 3.54e-11 62.8
MS.gene056135.t1 MTR_8g095390 46.939 49 26 0 71 119 67 115 5.98e-11 61.6
MS.gene056135.t1 MTR_5g041570 44.262 61 29 1 71 126 186 246 7.09e-11 61.6
MS.gene056135.t1 MTR_5g029840 36.620 71 45 0 74 144 70 140 7.13e-11 61.6
MS.gene056135.t1 MTR_3g052430 35.849 106 38 4 41 119 43 145 8.24e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056135.t1 AT4G18770 49.180 122 40 3 40 139 216 337 1.37e-28 112
MS.gene056135.t1 AT5G58850 41.912 136 51 3 19 129 83 215 3.46e-24 100
MS.gene056135.t1 AT5G40360 58.824 85 30 2 61 143 203 284 6.13e-24 98.6
MS.gene056135.t1 AT3G27785 39.773 176 64 7 1 143 151 317 1.15e-23 98.6
MS.gene056135.t1 AT5G11050 47.368 114 32 3 38 126 102 212 1.40e-23 98.2
MS.gene056135.t1 AT2G25230 47.059 102 50 2 61 161 71 169 1.67e-20 87.0
MS.gene056135.t1 AT5G40430 45.745 94 46 2 61 152 98 188 6.27e-18 80.5
MS.gene056135.t1 AT4G32730 50.847 59 28 1 61 119 130 187 4.25e-13 68.9
MS.gene056135.t1 AT4G32730 50.847 59 28 1 61 119 130 187 4.25e-13 68.9
MS.gene056135.t1 AT4G32730 50.847 59 28 1 61 119 130 187 4.25e-13 68.9
MS.gene056135.t1 AT4G32730 50.847 59 28 1 61 119 130 187 4.25e-13 68.9
MS.gene056135.t1 AT5G02320 49.153 59 29 1 61 119 170 227 5.15e-13 68.2
MS.gene056135.t1 AT5G02320 49.153 59 29 1 61 119 170 227 5.15e-13 68.2
MS.gene056135.t1 AT4G32730 50.847 59 28 1 61 119 130 187 5.54e-13 68.6
MS.gene056135.t1 AT3G09370 48.333 60 28 1 61 120 188 244 7.61e-13 67.8
MS.gene056135.t1 AT1G57560 31.944 144 81 4 71 205 67 202 7.65e-13 67.0
MS.gene056135.t1 AT3G09370 50.000 60 29 1 61 120 178 236 8.14e-13 67.8
MS.gene056135.t1 AT5G02320 49.153 59 29 1 61 119 110 167 8.20e-13 67.8
MS.gene056135.t1 AT3G09370 50.000 60 29 1 61 120 173 231 8.66e-13 67.8
MS.gene056135.t1 AT3G55730 52.727 55 26 0 74 128 111 165 1.02e-12 67.4
MS.gene056135.t1 AT5G11510 45.763 59 31 1 61 119 124 181 1.89e-12 67.0
MS.gene056135.t1 AT5G11510 45.763 59 31 1 61 119 124 181 1.89e-12 67.0
MS.gene056135.t1 AT5G11510 45.763 59 31 1 61 119 124 181 1.89e-12 67.0
MS.gene056135.t1 AT5G11510 45.763 59 31 1 61 119 124 181 2.16e-12 66.6
MS.gene056135.t1 AT5G11510 45.763 59 31 1 61 119 124 181 2.30e-12 66.6
MS.gene056135.t1 AT3G09230 55.102 49 22 0 71 119 107 155 2.41e-12 66.2
MS.gene056135.t1 AT1G57560 29.630 135 57 3 71 205 67 163 3.26e-12 65.1
MS.gene056135.t1 AT4G37260 34.545 110 48 3 35 121 7 115 5.02e-12 64.7
MS.gene056135.t1 AT4G38620 35.000 100 61 2 71 169 67 163 7.88e-12 63.9
MS.gene056135.t1 AT3G28470 51.163 43 21 0 72 114 68 110 1.07e-11 63.9
MS.gene056135.t1 AT5G14750 32.099 81 53 1 71 151 10 88 1.11e-11 61.2
MS.gene056135.t1 AT5G14750 32.099 81 53 1 71 151 10 88 1.11e-11 61.2
MS.gene056135.t1 AT2G32460 36.111 108 39 4 41 121 20 124 1.26e-11 64.3
MS.gene056135.t1 AT3G11440 36.111 108 39 4 41 121 43 147 1.29e-11 63.9
MS.gene056135.t1 AT2G32460 36.111 108 39 4 41 121 8 112 1.38e-11 63.9
MS.gene056135.t1 AT3G11440 36.111 108 39 4 41 121 43 147 1.61e-11 63.9
MS.gene056135.t1 AT3G11440 36.111 108 39 4 41 121 43 147 1.61e-11 63.9
MS.gene056135.t1 AT3G11440 36.111 108 39 4 41 121 43 147 1.61e-11 63.9
MS.gene056135.t1 AT4G00540 50.847 59 28 1 61 119 149 206 1.82e-11 63.5
MS.gene056135.t1 AT1G17950 34.066 91 55 2 71 158 57 145 1.93e-11 62.4
MS.gene056135.t1 AT1G09540 27.857 140 92 4 71 208 67 199 2.12e-11 63.2
MS.gene056135.t1 AT4G00540 50.847 59 28 1 61 119 147 204 2.30e-11 63.2
MS.gene056135.t1 AT3G53200 42.857 84 40 3 75 151 35 117 2.44e-11 61.6
MS.gene056135.t1 AT3G12720 46.939 49 26 0 71 119 77 125 2.89e-11 62.4
MS.gene056135.t1 AT5G14750 32.099 81 53 1 71 151 37 115 3.08e-11 60.5
MS.gene056135.t1 AT5G67300 43.077 65 36 1 63 127 51 114 4.27e-11 62.0
MS.gene056135.t1 AT2G39880 26.429 140 80 2 6 123 16 154 4.66e-11 62.4
MS.gene056135.t1 AT1G22640 47.170 53 28 0 71 123 10 62 5.30e-11 60.5
MS.gene056135.t1 AT3G53200 42.857 84 40 3 75 151 68 150 5.59e-11 61.2
MS.gene056135.t1 AT2G26950 30.556 108 46 2 41 122 18 122 6.34e-11 62.0
MS.gene056135.t1 AT2G23290 32.727 110 50 3 35 121 7 115 6.76e-11 61.6
MS.gene056135.t1 AT4G09460 28.947 152 80 3 71 222 67 190 8.42e-11 60.5
MS.gene056135.t1 AT1G69560 44.444 63 30 1 71 133 175 232 9.95e-11 61.2

Find 55 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTGAGCTTTCAAAATT+TGG 0.023881 7.3:-54606445 None:intergenic
GGTTCTTCCTCTTGGCATTT+TGG 0.165983 7.3:-54606306 None:intergenic
ACGCCAGAGAACGAAATTTA+TGG 0.247871 7.3:+54606493 MS.gene056135:CDS
GAATCCTCTTCAGCCGCTTT+TGG 0.249031 7.3:-54603693 None:intergenic
CTTTCATGCAATGATGGAAT+TGG 0.295338 7.3:+54603624 None:intergenic
AATTATGAGTTTGGATCATA+TGG 0.312481 7.3:+54606577 MS.gene056135:CDS
AGATCAATTTCTTGCTTAAG+AGG 0.316151 7.3:-54606622 None:intergenic
TAAGCAAGAAATTGATCTAA+TGG 0.349689 7.3:+54606627 MS.gene056135:CDS
ACCACAATGAATTATGAGTT+TGG 0.360754 7.3:+54606568 MS.gene056135:CDS
TATGATTTCAGAAGGATTCA+TGG 0.372361 7.3:+54606152 MS.gene056135:intron
GGCGTTCCAATGGTTCTTGA+TGG 0.390852 7.3:-54606272 None:intergenic
TACCCATAAATTTCGTTCTC+TGG 0.413122 7.3:-54606496 None:intergenic
CTTACCCCGGTTCTTCCTCT+TGG 0.419409 7.3:-54606314 None:intergenic
ATGGTTCTTGATGGAGTTCT+CGG 0.419561 7.3:-54606263 None:intergenic
CGCCAGAGAACGAAATTTAT+GGG 0.422686 7.3:+54606494 MS.gene056135:CDS
AAAATGCCAAGAGGAAGAAC+CGG 0.423904 7.3:+54606308 MS.gene056135:CDS
ACTACTTATGAAATACATAA+TGG 0.424424 7.3:+54606351 MS.gene056135:CDS
TCTTGCTTAAGAGGAACCTC+AGG 0.432784 7.3:-54606613 None:intergenic
TCATCACCATTGAACATCAT+TGG 0.435028 7.3:-54606523 None:intergenic
ATCGAAGCTCACAAAATAGT+TGG 0.446030 7.3:+54606199 MS.gene056135:CDS
GAAATTTCAAGAAGATTGCC+AGG 0.467461 7.3:+54606235 MS.gene056135:CDS
AGATATTCAACTTCAAGTGT+TGG 0.470477 7.3:-54605621 None:intergenic
GATGGAATGGCAAGTGGATC+TGG 0.471586 7.3:+54606544 MS.gene056135:CDS
GGCGCTTAGTGGCGTTCCAA+TGG 0.472689 7.3:-54606282 None:intergenic
CAAGGATCTCAATCAAATCA+AGG 0.475188 7.3:+54603738 MS.gene056135:CDS
ATGGAGTTCTCGGTGCGCCC+TGG 0.478031 7.3:-54606253 None:intergenic
CAATGCTAAGGAAGTTGAAA+AGG 0.493311 7.3:+54606381 MS.gene056135:CDS
TTCCCTTTGAACTCTTACCC+CGG 0.526884 7.3:-54606327 None:intergenic
ATGATGTTCAATGGTGATGA+TGG 0.528337 7.3:+54606526 MS.gene056135:CDS
ACAAAATAGTTGGAAACAAG+TGG 0.538861 7.3:+54606209 MS.gene056135:CDS
GTGTCCAAAAGCGGCTGAAG+AGG 0.542775 7.3:+54603689 MS.gene056135:CDS
AAATCCAGAGAAAATGATCA+AGG 0.549710 7.3:+54603651 MS.gene056135:CDS
AAATGCCAAGAGGAAGAACC+GGG 0.554441 7.3:+54606309 MS.gene056135:CDS
AGAACTCCATCAAGAACCAT+TGG 0.561227 7.3:+54606266 MS.gene056135:CDS
AACCGGGGTAAGAGTTCAAA+GGG 0.562064 7.3:+54606325 MS.gene056135:CDS
AATGGAAGTCACCAATGCTA+AGG 0.573363 7.3:+54606369 MS.gene056135:CDS
TCAATCAAATCAAGGGACAA+TGG 0.573893 7.3:+54603746 MS.gene056135:CDS
TATGTTCCAATGATGTTCAA+TGG 0.578460 7.3:+54606517 MS.gene056135:CDS
GAACCGGGGTAAGAGTTCAA+AGG 0.590922 7.3:+54606324 MS.gene056135:CDS
CTTGCTTAAGAGGAACCTCA+GGG 0.595722 7.3:-54606612 None:intergenic
GGATTCATGGTCTGAAGAGG+AGG 0.599345 7.3:+54606165 MS.gene056135:CDS
GAAGGATTCATGGTCTGAAG+AGG 0.605924 7.3:+54606162 MS.gene056135:intron
GTTCAATGGTGATGATGGAA+TGG 0.611388 7.3:+54606531 MS.gene056135:CDS
AAGGATCTCAATCAAATCAA+GGG 0.611928 7.3:+54603739 MS.gene056135:CDS
GGGACAATGGACTTCAAATG+AGG 0.612328 7.3:+54603759 MS.gene056135:CDS
GGTGATGATGGAATGGCAAG+TGG 0.637638 7.3:+54606538 MS.gene056135:CDS
TCGTGCTCAGTGTCCAAAAG+CGG 0.641897 7.3:+54603680 MS.gene056135:CDS
AATGGACTTCAAATGAGGAT+CGG 0.644601 7.3:+54603764 MS.gene056135:CDS
AAATTTCAAGAAGATTGCCA+GGG 0.649002 7.3:+54606236 MS.gene056135:CDS
GAATAATGAAATTCAACACA+AGG 0.657330 7.3:+54603720 MS.gene056135:CDS
TCCAAACTCATAATTCATTG+TGG 0.657863 7.3:-54606569 None:intergenic
GATGTCGTATTCTACGAGCA+TGG 0.668228 7.3:+54606408 MS.gene056135:CDS
AGCGCCGCCAAAATGCCAAG+AGG 0.692200 7.3:+54606299 MS.gene056135:CDS
ATGCTCGTAGAATACGACAT+CGG 0.744488 7.3:-54606406 None:intergenic
AATGCCAAGAGGAAGAACCG+GGG 0.791379 7.3:+54606310 MS.gene056135:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAAATACTTAATAAA+CGG - chr7.3:54605585-54605604 None:intergenic 10.0%
!! TGTTAATTATATTTAATGTA+AGG - chr7.3:54606104-54606123 None:intergenic 10.0%
!! TTTAATGAATTAAAAAGAAA+GGG - chr7.3:54604833-54604852 None:intergenic 10.0%
!!! TCTTTATCTATTTTTAATTT+TGG + chr7.3:54604916-54604935 MS.gene056135:intron 10.0%
!!! TTTTAATGAATTAAAAAGAA+AGG - chr7.3:54604834-54604853 None:intergenic 10.0%
!! AATAAAACGAAAACAAATTA+TGG + chr7.3:54604207-54604226 MS.gene056135:intron 15.0%
!! ATTTACATAGATTTATTAAG+CGG + chr7.3:54605803-54605822 MS.gene056135:intron 15.0%
!! CTATTAATTAAAAACAGTTA+TGG - chr7.3:54604556-54604575 None:intergenic 15.0%
!! TAGTTTAATATTCATTTCAT+TGG + chr7.3:54604317-54604336 MS.gene056135:intron 15.0%
!! TCCAAAAATTGATTAAAAAA+AGG - chr7.3:54604737-54604756 None:intergenic 15.0%
!!! ATGTGTTTATGATTTTATAA+AGG + chr7.3:54604269-54604288 MS.gene056135:intron 15.0%
!!! CAATTTTATATAATCAATGT+AGG - chr7.3:54605024-54605043 None:intergenic 15.0%
!!! TCAAATATTTTATCATACAT+TGG + chr7.3:54605685-54605704 MS.gene056135:intron 15.0%
!!! TCCTTTTTTTAATCAATTTT+TGG + chr7.3:54604733-54604752 MS.gene056135:intron 15.0%
!!! TGTTTTTAATTAATAGTTGA+GGG + chr7.3:54604560-54604579 MS.gene056135:intron 15.0%
!!! TTGTTTAAAATCTAATATTG+AGG + chr7.3:54604870-54604889 MS.gene056135:intron 15.0%
!!! TTTAACAAGAGATTTTTTAA+GGG + chr7.3:54605832-54605851 MS.gene056135:intron 15.0%
!! AAAAAAATACCTACGAAAAA+AGG - chr7.3:54604596-54604615 None:intergenic 20.0%
!! AAAAAATACCTACGAAAAAA+GGG - chr7.3:54604595-54604614 None:intergenic 20.0%
!! AATTTGTAAGTATTTGATAG+AGG + chr7.3:54605125-54605144 MS.gene056135:intron 20.0%
!! ACTACTTATGAAATACATAA+TGG + chr7.3:54606351-54606370 MS.gene056135:CDS 20.0%
!! ATAAAAAAGCAATAGATCTA+AGG - chr7.3:54604652-54604671 None:intergenic 20.0%
!! ATAAAAATAGACTAAAGTAG+TGG - chr7.3:54604372-54604391 None:intergenic 20.0%
!! TCTATCAAATACTTACAAAT+TGG - chr7.3:54605126-54605145 None:intergenic 20.0%
!! TTAAACTATACTAAATTTGC+AGG + chr7.3:54605735-54605754 MS.gene056135:intron 20.0%
!! TTATGAAATTGTGGTATATA+TGG - chr7.3:54605962-54605981 None:intergenic 20.0%
!!! ATAGATGAATTTTACACAAA+TGG + chr7.3:54604948-54604967 MS.gene056135:intron 20.0%
!!! CTGTTTTTAATTAATAGTTG+AGG + chr7.3:54604559-54604578 MS.gene056135:intron 20.0%
!!! CTTTAACAAGAGATTTTTTA+AGG + chr7.3:54605831-54605850 MS.gene056135:intron 20.0%
!!! GTTTTTAATTAATAGTTGAG+GGG + chr7.3:54604561-54604580 MS.gene056135:intron 20.0%
!!! TCTATATTTGTCATTTCAAA+TGG - chr7.3:54605783-54605802 None:intergenic 20.0%
! AACAGTTATGGATAAAACTT+AGG - chr7.3:54604544-54604563 None:intergenic 25.0%
! AATTATGAGTTTGGATCATA+TGG + chr7.3:54606577-54606596 MS.gene056135:CDS 25.0%
! AGAATCAGTCATTACTAAAT+TGG + chr7.3:54606063-54606082 MS.gene056135:intron 25.0%
! ATGAATTAAAAAGAAAGGGA+AGG - chr7.3:54604829-54604848 None:intergenic 25.0%
! CTAACAAAAACATATGTGAA+AGG - chr7.3:54604998-54605017 None:intergenic 25.0%
! CTTACAAATGAGACATAAAA+GGG - chr7.3:54605217-54605236 None:intergenic 25.0%
! GAAAGAGTTAAGTTATAAGA+AGG - chr7.3:54605170-54605189 None:intergenic 25.0%
! GAATAATGAAATTCAACACA+AGG + chr7.3:54603720-54603739 MS.gene056135:CDS 25.0%
! TAAGCAAGAAATTGATCTAA+TGG + chr7.3:54606627-54606646 MS.gene056135:CDS 25.0%
! TCTTACAAATGAGACATAAA+AGG - chr7.3:54605218-54605237 None:intergenic 25.0%
! TGTATTGCTAAGTTTATGAA+AGG + chr7.3:54603980-54603999 MS.gene056135:intron 25.0%
! TTGGTCTATATGTGTTAAAT+TGG + chr7.3:54605883-54605902 MS.gene056135:intron 25.0%
! TTGTTATGTATGATTTCAGA+AGG + chr7.3:54606144-54606163 MS.gene056135:intron 25.0%
! TTTCTTGCTTTATGAAATTG+TGG - chr7.3:54605971-54605990 None:intergenic 25.0%
!! ACAAATTACTTCTTGATGAT+AGG - chr7.3:54604427-54604446 None:intergenic 25.0%
!!! AAGAGTGTTATTCATACAAT+TGG + chr7.3:54605864-54605883 MS.gene056135:intron 25.0%
!!! ATTATTTACCCTTTTTTCGT+AGG + chr7.3:54604584-54604603 MS.gene056135:intron 25.0%
!!! TGATTTTAGAATTGAAGGTT+TGG + chr7.3:54606468-54606487 MS.gene056135:CDS 25.0%
!!! TGTTTTTGTCCTTTATTCTA+GGG + chr7.3:54604678-54604697 MS.gene056135:intron 25.0%
AAATCCAGAGAAAATGATCA+AGG + chr7.3:54603651-54603670 MS.gene056135:CDS 30.0%
AAATTTCAAGAAGATTGCCA+GGG + chr7.3:54606236-54606255 MS.gene056135:CDS 30.0%
AAGGATCTCAATCAAATCAA+GGG + chr7.3:54603739-54603758 MS.gene056135:CDS 30.0%
ACAAAATAGTTGGAAACAAG+TGG + chr7.3:54606209-54606228 MS.gene056135:CDS 30.0%
ACCACAATGAATTATGAGTT+TGG + chr7.3:54606568-54606587 MS.gene056135:CDS 30.0%
AGATATTCAACTTCAAGTGT+TGG - chr7.3:54605624-54605643 None:intergenic 30.0%
AGATCAATTTCTTGCTTAAG+AGG - chr7.3:54606625-54606644 None:intergenic 30.0%
AGATCTAAGGAAATAAAGAG+TGG - chr7.3:54604639-54604658 None:intergenic 30.0%
ATAAAAGGGAAAGATTGACT+TGG - chr7.3:54605203-54605222 None:intergenic 30.0%
ATATAAGCCATGTAAGCTTA+TGG + chr7.3:54605644-54605663 MS.gene056135:intron 30.0%
ATCATACATAACAATGTGTG+TGG - chr7.3:54606138-54606157 None:intergenic 30.0%
ATGTAATTAGAAACAGAGCA+TGG - chr7.3:54605445-54605464 None:intergenic 30.0%
CATGAGTTTCTTTCACTTAA+TGG + chr7.3:54605063-54605082 MS.gene056135:intron 30.0%
GATAGAGAATCATAAACAAG+AGG - chr7.3:54605933-54605952 None:intergenic 30.0%
TATGATTTCAGAAGGATTCA+TGG + chr7.3:54606152-54606171 MS.gene056135:intron 30.0%
TATGTTCCAATGATGTTCAA+TGG + chr7.3:54606517-54606536 MS.gene056135:CDS 30.0%
TCCAAACTCATAATTCATTG+TGG - chr7.3:54606572-54606591 None:intergenic 30.0%
TCCTATCAAAATAATTCCTG+TGG + chr7.3:54605414-54605433 MS.gene056135:intron 30.0%
! GTTTTTGTCCTTTATTCTAG+GGG + chr7.3:54604679-54604698 MS.gene056135:intron 30.0%
!!! ATTTTTGGAGCATGTGATAT+AGG + chr7.3:54604748-54604767 MS.gene056135:intron 30.0%
!!! CTGTTTTTGTCCTTTATTCT+AGG + chr7.3:54604677-54604696 MS.gene056135:intron 30.0%
!!! GAGAGTGATTTTAGAATTGA+AGG + chr7.3:54606463-54606482 MS.gene056135:CDS 30.0%
!!! GGAATTATTTTGATAGGAAG+CGG - chr7.3:54605412-54605431 None:intergenic 30.0%
!!! TCCACAGGAATTATTTTGAT+AGG - chr7.3:54605418-54605437 None:intergenic 30.0%
AAACCAAACCCCTAGAATAA+AGG - chr7.3:54604690-54604709 None:intergenic 35.0%
AAGAATGAGACCTTAATGTC+TGG - chr7.3:54604052-54604071 None:intergenic 35.0%
AAGTTTATGAAAGGCAGAAC+TGG + chr7.3:54603989-54604008 MS.gene056135:intron 35.0%
AGAGGTGAAAATTTGAACTC+AGG + chr7.3:54605143-54605162 MS.gene056135:intron 35.0%
ATAGCATGTATTTGTTCCCA+CGG - chr7.3:54606023-54606042 None:intergenic 35.0%
ATCACTTTGGGCTAAGAAAA+TGG + chr7.3:54603954-54603973 MS.gene056135:intron 35.0%
ATCGAAGCTCACAAAATAGT+TGG + chr7.3:54606199-54606218 MS.gene056135:CDS 35.0%
CAAGGATCTCAATCAAATCA+AGG + chr7.3:54603738-54603757 MS.gene056135:CDS 35.0%
CAATGCTAAGGAAGTTGAAA+AGG + chr7.3:54606381-54606400 MS.gene056135:CDS 35.0%
CTCTCTGAGCTTTCAAAATT+TGG - chr7.3:54606448-54606467 None:intergenic 35.0%
GAAATTTCAAGAAGATTGCC+AGG + chr7.3:54606235-54606254 MS.gene056135:CDS 35.0%
TACCCATAAATTTCGTTCTC+TGG - chr7.3:54606499-54606518 None:intergenic 35.0%
TCAATCAAATCAAGGGACAA+TGG + chr7.3:54603746-54603765 MS.gene056135:CDS 35.0%
TCATCACCATTGAACATCAT+TGG - chr7.3:54606526-54606545 None:intergenic 35.0%
! AAGGAAAAGAGTGTACAAGA+AGG - chr7.3:54604718-54604737 None:intergenic 35.0%
! AATGGACTTCAAATGAGGAT+CGG + chr7.3:54603764-54603783 MS.gene056135:CDS 35.0%
! AGGAAAAGAGTGTACAAGAA+GGG - chr7.3:54604717-54604736 None:intergenic 35.0%
! ATGATGTTCAATGGTGATGA+TGG + chr7.3:54606526-54606545 MS.gene056135:CDS 35.0%
! CTTTTCAACTTCCTTAGCAT+TGG - chr7.3:54606383-54606402 None:intergenic 35.0%
! GAATCCTTGATCATTTTCTC+TGG - chr7.3:54603658-54603677 None:intergenic 35.0%
! TTTATTCTAGGGGTTTGGTT+TGG + chr7.3:54604689-54604708 MS.gene056135:intron 35.0%
AAAATGCCAAGAGGAAGAAC+CGG + chr7.3:54606308-54606327 MS.gene056135:CDS 40.0%
AATGGAAGTCACCAATGCTA+AGG + chr7.3:54606369-54606388 MS.gene056135:CDS 40.0%
ACGCCAGAGAACGAAATTTA+TGG + chr7.3:54606493-54606512 MS.gene056135:CDS 40.0%
AGAACTCCATCAAGAACCAT+TGG + chr7.3:54606266-54606285 MS.gene056135:CDS 40.0%
ATGCTCGTAGAATACGACAT+CGG - chr7.3:54606409-54606428 None:intergenic 40.0%
ATGGTTCTTGATGGAGTTCT+CGG - chr7.3:54606266-54606285 None:intergenic 40.0%
CGCCAGAGAACGAAATTTAT+GGG + chr7.3:54606494-54606513 MS.gene056135:CDS 40.0%
TGATCGACCATAAGCTTACA+TGG - chr7.3:54605654-54605673 None:intergenic 40.0%
TGGAGCATGTGATATAGGAT+GGG + chr7.3:54604753-54604772 MS.gene056135:intron 40.0%
TTGGAGCATGTGATATAGGA+TGG + chr7.3:54604752-54604771 MS.gene056135:intron 40.0%
TTGTAGGGTTCTTGTCCAAT+TGG + chr7.3:54603928-54603947 MS.gene056135:intron 40.0%
! CCAAGATTTTGTTCTCCTCA+CGG + chr7.3:54605992-54606011 MS.gene056135:intron 40.0%
! GGAAAAGAGTGTACAAGAAG+GGG - chr7.3:54604716-54604735 None:intergenic 40.0%
! TCCAATTGGTGGATCACTTT+GGG + chr7.3:54603942-54603961 MS.gene056135:intron 40.0%
! TGGAATAGAGTTTTTCCCTG+AGG + chr7.3:54606597-54606616 MS.gene056135:CDS 40.0%
! TGTCCTTTATTCTAGGGGTT+TGG + chr7.3:54604684-54604703 MS.gene056135:intron 40.0%
!! AAAAGAAAGGGAAGGCATCA+AGG - chr7.3:54604821-54604840 None:intergenic 40.0%
!! AAAGAAAGGGAAGGCATCAA+GGG - chr7.3:54604820-54604839 None:intergenic 40.0%
!! AAAGGGAAAGATTGACTTGG+TGG - chr7.3:54605200-54605219 None:intergenic 40.0%
!! GTTCAATGGTGATGATGGAA+TGG + chr7.3:54606531-54606550 MS.gene056135:CDS 40.0%
AAATGCCAAGAGGAAGAACC+GGG + chr7.3:54606309-54606328 MS.gene056135:CDS 45.0%
AACCGGGGTAAGAGTTCAAA+GGG + chr7.3:54606325-54606344 MS.gene056135:CDS 45.0%
ACAGAGCATGGTTATTCCAC+AGG - chr7.3:54605433-54605452 None:intergenic 45.0%
CCATCTTCGACCAGACATTA+AGG + chr7.3:54604039-54604058 MS.gene056135:intron 45.0%
CCGTGAGGAGAACAAAATCT+TGG - chr7.3:54605995-54606014 None:intergenic 45.0%
CCTTAATGTCTGGTCGAAGA+TGG - chr7.3:54604042-54604061 None:intergenic 45.0%
CTTGCTTAAGAGGAACCTCA+GGG - chr7.3:54606615-54606634 None:intergenic 45.0%
GAAGGATTCATGGTCTGAAG+AGG + chr7.3:54606162-54606181 MS.gene056135:intron 45.0%
GAGCATGTGATATAGGATGG+GGG + chr7.3:54604755-54604774 MS.gene056135:intron 45.0%
GATGTCGTATTCTACGAGCA+TGG + chr7.3:54606408-54606427 MS.gene056135:CDS 45.0%
GGAGCATGTGATATAGGATG+GGG + chr7.3:54604754-54604773 MS.gene056135:intron 45.0%
TAGGGTTCTTGTCCAATTGG+TGG + chr7.3:54603931-54603950 MS.gene056135:intron 45.0%
TCTTGCTTAAGAGGAACCTC+AGG - chr7.3:54606616-54606635 None:intergenic 45.0%
TTCCCTTTGAACTCTTACCC+CGG - chr7.3:54606330-54606349 None:intergenic 45.0%
! GGGACAATGGACTTCAAATG+AGG + chr7.3:54603759-54603778 MS.gene056135:CDS 45.0%
! GGTTCTTCCTCTTGGCATTT+TGG - chr7.3:54606309-54606328 None:intergenic 45.0%
! GTCCAATTGGTGGATCACTT+TGG + chr7.3:54603941-54603960 MS.gene056135:intron 45.0%
! TCTTCCTCTTGGCATTTTGG+CGG - chr7.3:54606306-54606325 None:intergenic 45.0%
!! AAAGATTGACTTGGTGGCTG+AGG - chr7.3:54605194-54605213 None:intergenic 45.0%
!! AAGAAAGGGAAGGCATCAAG+GGG - chr7.3:54604819-54604838 None:intergenic 45.0%
!! AAAAAAAATAATAATAATCA+AGG - chr7.3:54603859-54603878 None:intergenic 5.0%
!!! AATTATTTTATATTTTTGTA+GGG + chr7.3:54603913-54603932 MS.gene056135:intron 5.0%
!!! TAATTATTTTATATTTTTGT+AGG + chr7.3:54603912-54603931 MS.gene056135:intron 5.0%
AATGCCAAGAGGAAGAACCG+GGG + chr7.3:54606310-54606329 MS.gene056135:CDS 50.0%
ATATAGGATGGGGGCTGCTA+TGG + chr7.3:54604764-54604783 MS.gene056135:intron 50.0%
GAACCGGGGTAAGAGTTCAA+AGG + chr7.3:54606324-54606343 MS.gene056135:CDS 50.0%
GATGGAATGGCAAGTGGATC+TGG + chr7.3:54606544-54606563 MS.gene056135:CDS 50.0%
GCATGTATTTGTTCCCACGG+TGG - chr7.3:54606020-54606039 None:intergenic 50.0%
GCCCAAAGTGATCCACCAAT+TGG - chr7.3:54603946-54603965 None:intergenic 50.0%
GGATTCATGGTCTGAAGAGG+AGG + chr7.3:54606165-54606184 MS.gene056135:CDS 50.0%
GGCGTTCCAATGGTTCTTGA+TGG - chr7.3:54606275-54606294 None:intergenic 50.0%
TCGTGCTCAGTGTCCAAAAG+CGG + chr7.3:54603680-54603699 MS.gene056135:CDS 50.0%
! TATGGAGTGCCAACCTGGTT+GGG + chr7.3:54604782-54604801 MS.gene056135:intron 50.0%
!! GAATCCTCTTCAGCCGCTTT+TGG - chr7.3:54603696-54603715 None:intergenic 50.0%
!! GGTGATGATGGAATGGCAAG+TGG + chr7.3:54606538-54606557 MS.gene056135:CDS 50.0%
ACTAGGCATCCCAACCAGGT+TGG - chr7.3:54604794-54604813 None:intergenic 55.0%
CTTACCCCGGTTCTTCCTCT+TGG - chr7.3:54606317-54606336 None:intergenic 55.0%
GTGTCCAAAAGCGGCTGAAG+AGG + chr7.3:54603689-54603708 MS.gene056135:CDS 55.0%
! CTATGGAGTGCCAACCTGGT+TGG + chr7.3:54604781-54604800 MS.gene056135:intron 55.0%
!! GAAGGCATCAAGGGGCAACT+AGG - chr7.3:54604811-54604830 None:intergenic 55.0%
AGCGCCGCCAAAATGCCAAG+AGG + chr7.3:54606299-54606318 MS.gene056135:CDS 60.0%
GGCAACTAGGCATCCCAACC+AGG - chr7.3:54604798-54604817 None:intergenic 60.0%
GGCGCTTAGTGGCGTTCCAA+TGG - chr7.3:54606285-54606304 None:intergenic 60.0%
! GCTGCTATGGAGTGCCAACC+TGG + chr7.3:54604777-54604796 MS.gene056135:intron 60.0%
!! GGCATTTTGGCGGCGCTTAG+TGG - chr7.3:54606296-54606315 None:intergenic 60.0%
! ATGGAGTTCTCGGTGCGCCC+TGG - chr7.3:54606256-54606275 None:intergenic 65.0%
!! TCTCCTCACGGTGCCACCGT+GGG + chr7.3:54606004-54606023 MS.gene056135:intron 65.0%
!! TTCTCCTCACGGTGCCACCG+TGG + chr7.3:54606003-54606022 MS.gene056135:intron 65.0%
GTTCCCACGGTGGCACCGTG+AGG - chr7.3:54606010-54606029 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 54603637 54606672 54603637 ID=MS.gene056135
chr7.3 mRNA 54603637 54606672 54603637 ID=MS.gene056135.t1;Parent=MS.gene056135
chr7.3 exon 54603637 54603785 54603637 ID=MS.gene056135.t1.exon1;Parent=MS.gene056135.t1
chr7.3 CDS 54603637 54603785 54603637 ID=cds.MS.gene056135.t1;Parent=MS.gene056135.t1
chr7.3 exon 54605594 54605654 54605594 ID=MS.gene056135.t1.exon2;Parent=MS.gene056135.t1
chr7.3 CDS 54605594 54605654 54605594 ID=cds.MS.gene056135.t1;Parent=MS.gene056135.t1
chr7.3 exon 54606163 54606672 54606163 ID=MS.gene056135.t1.exon3;Parent=MS.gene056135.t1
chr7.3 CDS 54606163 54606672 54606163 ID=cds.MS.gene056135.t1;Parent=MS.gene056135.t1
Gene Sequence

>MS.gene056135

ATGGAATTGGAAACAAATCCAGAGAAAATGATCAAGGATTCGATCGTGCTCAGTGTCCAAAAGCGGCTGAAGAGGATTCAAAAGAATAATGAAATTCAACACAAGGATCTCAATCAAATCAAGGGACAATGGACTTCAAATGAGGATCGGTATATCAAATCATTTAAAATTTTGTACTGTCTTTGTTTATTGTTTTAATCTTCAATTTGATTCATCTTACCTTGATTATTATTATTTTTTTTGTTATTTGTTCTTGACATATGATAAACAATGAATAATTATTTTATATTTTTGTAGGGTTCTTGTCCAATTGGTGGATCACTTTGGGCTAAGAAAATGGTCATGTATTGCTAAGTTTATGAAAGGCAGAACTGGAAAACAGTGCAGAGAGAGATGAAACAACCATCTTCGACCAGACATTAAGGTCTCATTCTTTTTAATCATTTCTAGATTTTATCTCTTATACATACACATATAAATAAAATAATATCAACTCTAAGCAATATTGATTCTTGCTTATTTTTTATCTTAACATATTTGATTTTTACATGTATACATATAGCTACATCAAATAAAACGAAAACAAATTATGGATGCATGTAAATAAATGAATCAATGCAAGTAAAATCATTATGTGTTTATGATTTTATAAAGGAAAGCAGAATTTGTAACTATCATAATAGTTTAATATTCATTTCATTGGATTTATAGTGATATTTTTGTAATACATCACCACTACTTTAGTCTATTTTTATAAATAAGCATTGTACTAAATCTTCTTATTGTTCCTATCATCAAGAAGTAATTTGTTTAAACTAATTTTTTTTCAAACATTTTTGAAAATACTGATGATAAATATGTTACTTTTGTAGAGAACAAAAGTGACGATGTCTATAAGAGTGCACCTAAGTTTTATCCATAACTGTTTTTAATTAATAGTTGAGGGGATTATTTACCCTTTTTTCGTAGGTATTTTTTTTTGAAGACAGTCACAGACTTCCACTCTTTATTTCCTTAGATCTATTGCTTTTTTATTGTTTCTGTTTTTGTCCTTTATTCTAGGGGTTTGGTTTGGACCCCTTCTTGTACACTCTTTTCCTTTTTTTAATCAATTTTTGGAGCATGTGATATAGGATGGGGGCTGCTATGGAGTGCCAACCTGGTTGGGATGCCTAGTTGCCCCTTGATGCCTTCCCTTTCTTTTTAATTCATTAAAAAAAATTAATAAGTTTTTTGTTTAAAATCTAATATTGAGGTAATTTTTGTTTATAGAAATTTATCTTTATCTATTTTTAATTTTGGTAATTTTGAATAGATGAATTTTACACAAATGGTATTTGACTTATTTTCACGCAACTCCTTTCACATATGTTTTTGTTAGAGTCCTACATTGATTATATAAAATTGTTCAATGTATTATTTAAGTCATGAGTTTCTTTCACTTAATGGACTAGACTATCATTTTTTTTTTTTAAACAATGTTATGCCAATTTGTAAGTATTTGATAGAGGTGAAAATTTGAACTCAGGTCCTTCTTATAACTTAACTCTTTCACCTCAGCCACCAAGTCAATCTTTCCCTTTTATGTCTCATTTGTAAGACTAATATTTCTTATTTTATACAAAAAGACGAATAATGTTTAAGATATCTCTCATTTTTTTAAATTTTTTTTGTCTCATTTGTAAGACTAACAAATAGTAGTATGTTTTTTGTCTCATATGTAACTCTTAGTCATGATTTATGTTAAAAACTTATTTTCTTTTGTTTCGTTGCCGCTTCCTATCAAAATAATTCCTGTGGAATAACCATGCTCTGTTTCTAATTACATTGCTTTGTACAATGTTATTCTTAATTGTCAAACAATGTAAATGATCGATGTTGAACACTAGATATACATGAGTTGACTGATCAATTTATTTTTCGAGTGATACTTGTCAAAATTATTCCGTTTATTAAGTATTTATGAATATTATCTTTTGTCAATCCAACACTTGAAGTTGAATATCTATATAAGCCATGTAAGCTTATGGTCGATCATTACTCGTATTTCAAATATTTTATCATACATTGGACTGAAGTAAATTGATGATTTTTTTTTTTAAACTATACTAAATTTGCAGGTTTGATGTAGTCAATTAATTTGCCATTTGAAATGACAAATATAGAATTTACATAGATTTATTAAGCGGTGTAACTTTAACAAGAGATTTTTTAAGGGAATTTTAATAAGAGTGTTATTCATACAATTGGTCTATATGTGTTAAATTGGTGTTTGATTTTCTATAAAATTTTGCCTCTTGTTTATGATTCTCTATCATAATGCCATATATACCACAATTTCATAAAGCAAGAAATCCAAGATTTTGTTCTCCTCACGGTGCCACCGTGGGAACAAATACATGCTATATTTTGTTAGATAGCTAATTAGAATCAGTCATTACTAAATTGGTGAAATGTGAATCTTCCTTACATTAAATATAATTAACAATATATCTAATCCACACACATTGTTATGTATGATTTCAGAAGGATTCATGGTCTGAAGAGGAGGACAAAATACTGATCGAAGCTCACAAAATAGTTGGAAACAAGTGGACTGAAATTTCAAGAAGATTGCCAGGGCGCACCGAGAACTCCATCAAGAACCATTGGAACGCCACTAAGCGCCGCCAAAATGCCAAGAGGAAGAACCGGGGTAAGAGTTCAAAGGGAAGACTACTTATGAAATACATAATGGAAGTCACCAATGCTAAGGAAGTTGAAAAGGAGCCGATGTCGTATTCTACGAGCATGGATATTAGAAATCAACCAAATTTTGAAAGCTCAGAGAGTGATTTTAGAATTGAAGGTTTGGCTACGCCAGAGAACGAAATTTATGGGTATGTTCCAATGATGTTCAATGGTGATGATGGAATGGCAAGTGGATCTGGTACCACAATGAATTATGAGTTTGGATCATATGGAATAGAGTTTTTCCCTGAGGTTCCTCTTAAGCAAGAAATTGATCTAATGGAGATGATCTATAAAAACCCTTAA
Protein sequence

>MS.gene056135.t1

MELETNPEKMIKDSIVLSVQKRLKRIQKNNEIQHKDLNQIKGQWTSNEDRIYEYYLLSIQHLKLNIYISHKDSWSEEEDKILIEAHKIVGNKWTEISRRLPGRTENSIKNHWNATKRRQNAKRKNRGKSSKGRLLMKYIMEVTNAKEVEKEPMSYSTSMDIRNQPNFESSESDFRIEGLATPENEIYGYVPMMFNGDDGMASGSGTTMNYEFGSYGIEFFPEVPLKQEIDLMEMIYKNP