AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056145

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056145.t1 MTR_6g044690 94.523 566 30 1 1 565 1 566 0.0 1082
MS.gene056145.t1 MTR_6g043960 88.690 504 37 1 62 565 1 484 0.0 915
MS.gene056145.t1 MTR_0376s0030 75.801 562 131 3 7 566 7 565 0.0 870
MS.gene056145.t1 MTR_2g054460 82.205 517 40 4 52 566 1 467 0.0 850
MS.gene056145.t1 MTR_1g035420 57.243 573 200 11 5 563 105 646 0.0 629
MS.gene056145.t1 MTR_8g070070 49.592 613 233 12 12 563 160 757 0.0 572
MS.gene056145.t1 MTR_8g070075 50.266 563 218 11 55 563 196 750 0.0 558
MS.gene056145.t1 MTR_8g071030 51.465 546 220 9 55 563 200 737 0.0 556
MS.gene056145.t1 MTR_1g035400 54.215 522 207 9 55 563 63 565 0.0 541
MS.gene056145.t1 MTR_7g088370 37.678 491 258 10 92 563 219 680 1.67e-98 314
MS.gene056145.t1 MTR_8g042750 36.069 524 283 17 60 563 167 658 2.62e-91 295
MS.gene056145.t1 MTR_3g011440 34.476 525 294 13 60 564 141 635 3.41e-90 291
MS.gene056145.t1 MTR_5g013420 38.031 518 265 17 60 561 581 1058 3.20e-89 297
MS.gene056145.t1 MTR_5g013420 38.031 518 265 17 60 561 581 1058 3.55e-89 297
MS.gene056145.t1 MTR_4g010830 38.511 470 245 14 109 561 507 949 1.20e-88 294
MS.gene056145.t1 MTR_4g010550 35.759 481 234 17 98 561 11 433 1.80e-79 258
MS.gene056145.t1 MTR_6g061270 35.031 491 260 17 109 562 196 664 2.33e-79 263
MS.gene056145.t1 MTR_7g084090 34.661 502 268 17 99 562 248 727 6.97e-78 261
MS.gene056145.t1 MTR_6g061200 31.551 561 302 19 34 562 125 635 4.36e-72 243
MS.gene056145.t1 MTR_6g044000 85.833 120 17 0 62 181 1 120 3.79e-64 207
MS.gene056145.t1 MTR_6g044000 100.000 56 0 0 511 566 117 172 3.46e-33 125
MS.gene056145.t1 MTR_7g084090 37.076 383 192 14 99 451 248 611 4.26e-63 219
MS.gene056145.t1 MTR_1g048950 32.230 453 253 11 130 561 88 507 1.92e-49 180
MS.gene056145.t1 MTR_7g445710 29.638 469 241 14 114 561 112 512 9.48e-48 175
MS.gene056145.t1 MTR_7g445530 29.424 469 242 14 114 561 112 512 2.24e-47 173
MS.gene056145.t1 MTR_7g450730 29.888 445 230 14 117 561 112 474 4.39e-44 164
MS.gene056145.t1 MTR_7g052480 29.618 314 195 12 263 562 225 526 2.83e-31 128
MS.gene056145.t1 MTR_7g445600 31.788 151 65 2 411 561 243 355 2.97e-20 92.8
MS.gene056145.t1 MTR_7g445600 33.058 121 75 3 114 233 108 223 1.50e-11 66.6
MS.gene056145.t1 MTR_8g078505 29.609 179 112 2 386 564 354 518 2.82e-19 91.7
MS.gene056145.t1 MTR_5g018850 31.148 183 107 4 380 558 1313 1480 1.40e-18 90.5
MS.gene056145.t1 MTR_8g078490 29.630 189 114 4 380 564 1059 1232 6.61e-18 88.2
MS.gene056145.t1 MTR_4g132610 28.571 189 116 4 380 564 853 1026 1.31e-17 87.4
MS.gene056145.t1 MTR_1g069570 22.801 307 171 8 309 564 430 721 2.44e-17 86.3
MS.gene056145.t1 MTR_5g098680 32.484 157 86 4 137 280 267 416 1.97e-14 76.6
MS.gene056145.t1 MTR_1g069570 23.282 262 136 7 309 520 430 676 1.40e-13 73.9
MS.gene056145.t1 MTR_4g131630 61.538 52 17 1 508 559 1 49 2.36e-12 62.4
MS.gene056145.t1 MTR_8g102580 30.573 157 89 4 137 280 261 410 4.05e-12 69.3
MS.gene056145.t1 MTR_7g445810 30.405 148 94 3 117 261 128 269 4.95e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056145.t1 AT4G13460 48.944 521 230 9 56 563 141 638 4.56e-168 492
MS.gene056145.t1 AT4G13460 48.944 521 230 9 56 563 141 638 4.56e-168 492
MS.gene056145.t1 AT2G33290 48.120 532 239 11 45 563 132 639 1.29e-165 486
MS.gene056145.t1 AT2G33290 48.120 532 239 11 45 563 132 639 1.29e-165 486
MS.gene056145.t1 AT2G33290 48.120 532 239 11 45 563 132 639 1.29e-165 486
MS.gene056145.t1 AT2G33290 48.120 532 239 11 45 563 132 639 1.29e-165 486
MS.gene056145.t1 AT2G22740 35.425 494 280 12 88 561 285 759 7.59e-87 286
MS.gene056145.t1 AT2G22740 35.425 494 280 12 88 561 285 759 7.59e-87 286
MS.gene056145.t1 AT1G73100 35.262 553 306 18 35 563 115 639 1.07e-83 275
MS.gene056145.t1 AT2G35160 36.344 465 232 13 114 561 310 727 1.43e-83 276
MS.gene056145.t1 AT2G35160 36.344 465 232 13 114 561 346 763 3.73e-83 276
MS.gene056145.t1 AT2G35160 36.344 465 232 13 114 561 346 763 3.73e-83 276
MS.gene056145.t1 AT2G35160 36.344 465 232 13 114 561 346 763 3.73e-83 276
MS.gene056145.t1 AT2G35160 36.344 465 232 13 114 561 346 763 3.73e-83 276
MS.gene056145.t1 AT5G04940 34.990 523 284 16 60 563 155 640 1.51e-82 271
MS.gene056145.t1 AT5G04940 34.990 523 284 16 60 563 155 640 1.51e-82 271
MS.gene056145.t1 AT5G13960 34.504 484 272 17 109 562 126 594 9.91e-77 255
MS.gene056145.t1 AT5G13960 34.557 463 259 16 130 562 12 460 2.64e-76 250
MS.gene056145.t1 AT1G17770 30.993 584 365 17 3 563 93 661 2.26e-74 250
MS.gene056145.t1 AT2G24740 36.712 444 247 14 129 563 306 724 1.23e-72 247
MS.gene056145.t1 AT5G47150 35.361 263 131 9 26 279 92 324 2.46e-32 127
MS.gene056145.t1 AT2G23740 28.669 293 149 9 305 562 1082 1349 1.59e-24 109
MS.gene056145.t1 AT2G23740 28.669 293 149 9 305 562 1089 1356 1.63e-24 109
MS.gene056145.t1 AT2G23740 28.669 293 149 9 305 562 1089 1356 1.63e-24 109
MS.gene056145.t1 AT2G23740 28.669 293 149 9 305 562 1089 1356 1.63e-24 109
MS.gene056145.t1 AT5G47160 37.569 181 95 6 106 276 236 408 1.02e-23 104
MS.gene056145.t1 AT5G47160 37.569 181 95 6 106 276 236 408 1.02e-23 104
MS.gene056145.t1 AT5G47160 37.569 181 95 6 106 276 236 408 1.02e-23 104
MS.gene056145.t1 AT2G23740 29.482 251 117 9 305 520 1089 1314 1.60e-19 93.6
MS.gene056145.t1 AT2G23740 29.482 251 117 9 305 520 1089 1314 1.60e-19 93.6
MS.gene056145.t1 AT3G03750 27.636 275 159 7 309 562 68 323 1.62e-18 87.8
MS.gene056145.t1 AT2G05900 37.572 173 92 9 174 337 26 191 1.03e-17 84.7
MS.gene056145.t1 AT1G57820 30.233 172 90 6 132 280 263 427 4.41e-13 72.4
MS.gene056145.t1 AT1G57820 30.233 172 90 6 132 280 263 427 4.41e-13 72.4
MS.gene056145.t1 AT1G57820 30.769 169 90 7 132 280 263 424 8.00e-13 71.6
MS.gene056145.t1 AT5G39550 30.233 172 90 7 132 280 248 412 8.72e-12 68.6

Find 129 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTTTGATCATGGTAAT+TGG 0.179510 7.3:+54423657 MS.gene056145:CDS
AGTGAATGTTGGTTTGAAAA+AGG 0.258242 7.3:+54422828 MS.gene056145:CDS
GATTCGTGTGTCGGGTTTGC+TGG 0.262976 7.3:+54422281 MS.gene056145:CDS
ACATAGGATTATCACATAAT+TGG 0.283098 7.3:-54422953 None:intergenic
TTGGATGTTTCCCCATCTTA+TGG 0.286358 7.3:+54423676 MS.gene056145:CDS
AGGATCATACTACCCATCTT+AGG 0.317543 7.3:-54422903 None:intergenic
TTGGCCTCTCTTAAGCATAT+TGG 0.319702 7.3:-54422934 None:intergenic
TGGAACGATGGCGCGCAATA+TGG 0.334616 7.3:-54422091 None:intergenic
AGAAACCGTGTGACACAAAA+AGG 0.338747 7.3:+54423287 MS.gene056145:CDS
CCAGTTCCTGGTGTTTGTAT+TGG 0.341157 7.3:+54422465 MS.gene056145:CDS
ATATTGCGCGCCATCGTTCC+AGG 0.358468 7.3:+54422093 MS.gene056145:CDS
CATGCTAGTATGAGTTCTAA+TGG 0.360661 7.3:+54422564 MS.gene056145:CDS
ATGAAACTAGTTGGGGAGTT+AGG 0.362684 7.3:+54423342 MS.gene056145:CDS
TATTATTCACTTCTTCTGTC+TGG 0.364776 7.3:-54422359 None:intergenic
TCCAATGGGAAGGAGAATAT+TGG 0.376182 7.3:+54422996 MS.gene056145:CDS
CAGAAGAAGTGAATAATAGT+AGG 0.376433 7.3:+54422364 MS.gene056145:CDS
ACTAATTGAACAAACACATT+TGG 0.377806 7.3:-54423635 None:intergenic
AACATTGGAAATGCCGCCTT+CGG 0.378400 7.3:-54423077 None:intergenic
TAGATCTAATGAAACTAGTT+GGG 0.379002 7.3:+54423334 MS.gene056145:CDS
ATAAAAGTTCCAGCTAGAAT+AGG 0.380021 7.3:-54423374 None:intergenic
TAAGCATATTGGCTTCCTTA+AGG 0.394112 7.3:-54422923 None:intergenic
TGCGAAGGACAACTACAAAA+AGG 0.399229 7.3:-54423260 None:intergenic
TAGCAGCAATCAAGTCATTT+CGG 0.407660 7.3:-54422389 None:intergenic
CAATTAGTTCTCTTTGATCA+TGG 0.411850 7.3:+54423650 MS.gene056145:CDS
TTTATAAGTTTATGTTATCA+AGG 0.412998 7.3:+54422868 MS.gene056145:CDS
TTCCTCGTCGTCATACTTTG+TGG 0.413262 7.3:-54423107 None:intergenic
GTTTGATTCGATTCGTGTGT+CGG 0.415574 7.3:+54422272 MS.gene056145:CDS
AAATCTAATCAGAAGATTAG+AGG 0.415891 7.3:+54422168 MS.gene056145:CDS
GAATAGGTCTACTCAAGAAT+GGG 0.418852 7.3:+54423496 MS.gene056145:CDS
TAGTTGGGGAGTTAGGTCTT+TGG 0.420703 7.3:+54423349 MS.gene056145:CDS
CTTGATCATGGGGTAGAAGC+TGG 0.421865 7.3:+54423740 MS.gene056145:CDS
TAAAAGTTCCAGCTAGAATA+GGG 0.427435 7.3:-54423373 None:intergenic
GCGCGCAATATGGAAGGGTT+TGG 0.428940 7.3:-54422081 None:intergenic
GAACAAACACATTTGGAGTT+GGG 0.430179 7.3:-54423628 None:intergenic
ACATTGGAAATGCCGCCTTC+GGG 0.431588 7.3:-54423076 None:intergenic
CCATTGCAAATACCATAAGA+TGG 0.432457 7.3:-54423688 None:intergenic
AAAATCATTGGTCCAGTTCC+TGG 0.434098 7.3:+54422453 MS.gene056145:CDS
GTCCGTATCGTGAGATGGTC+CGG 0.436727 7.3:+54422235 MS.gene056145:CDS
TGAATAGGTCTACTCAAGAA+TGG 0.436832 7.3:+54423495 MS.gene056145:CDS
TGTATAAGATAAGTGAATGT+TGG 0.437441 7.3:+54422817 MS.gene056145:CDS
GGTTCAAGGTCAACCTAAGA+TGG 0.443665 7.3:+54422890 MS.gene056145:CDS
CAAACAAAATTCTTGTTCTC+CGG 0.445353 7.3:-54422254 None:intergenic
TTAGATCTAATGAAACTAGT+TGG 0.450265 7.3:+54423333 MS.gene056145:CDS
TGGTACTTCTACTACTAGTA+AGG 0.451010 7.3:+54422776 MS.gene056145:CDS
GAGTGTTCTGAATGCGTTGA+TGG 0.451024 7.3:+54423146 MS.gene056145:CDS
TGCAATATGAGATTGATGTC+AGG 0.456152 7.3:+54422727 MS.gene056145:CDS
GATGGGTAGTATGATCCTTA+AGG 0.457082 7.3:+54422908 MS.gene056145:CDS
CCATCTTATGGTATTTGCAA+TGG 0.459327 7.3:+54423688 MS.gene056145:CDS
TTTGATTCGATTCGTGTGTC+GGG 0.459511 7.3:+54422273 MS.gene056145:CDS
CCAATACAAACACCAGGAAC+TGG 0.467377 7.3:-54422465 None:intergenic
TGAACAAACACATTTGGAGT+TGG 0.468046 7.3:-54423629 None:intergenic
CTTTCTGATGATATTTCCAA+TGG 0.469201 7.3:+54422981 MS.gene056145:CDS
CTCGTCGGGACCTGGAACGA+TGG 0.470882 7.3:-54422103 None:intergenic
CATTGCAAATACCATAAGAT+GGG 0.474185 7.3:-54423687 None:intergenic
TATCATGATGTGAAAATCAT+TGG 0.477666 7.3:+54422441 MS.gene056145:CDS
AGAAGTGAAATGTGTGTGAT+TGG 0.479419 7.3:+54422504 MS.gene056145:CDS
GCCAATATTCTCCTTCCCAT+TGG 0.487788 7.3:-54422997 None:intergenic
CTCCCTAGTCAAAACAAGTC+CGG 0.496317 7.3:-54423408 None:intergenic
ACTACCCCTTATAGTAAAAG+TGG 0.498302 7.3:+54423197 MS.gene056145:CDS
ACTAGTGTGGTTATGTCTGA+TGG 0.506532 7.3:+54422600 MS.gene056145:CDS
AAAAGGTATTAAATATAGGT+TGG 0.507633 7.3:+54423304 MS.gene056145:CDS
TCAAGACTAAGCTCTCTCAT+TGG 0.507939 7.3:-54423722 None:intergenic
TCTTTGGACCCTATTCTAGC+TGG 0.516120 7.3:+54423365 MS.gene056145:CDS
TTTATGTTATCAAGGGTTCA+AGG 0.516545 7.3:+54422876 MS.gene056145:CDS
AAATCTAAAGTAGGATATGC+GGG 0.520737 7.3:-54423554 None:intergenic
TACGACAGCAACACTCTGGC+GGG 0.520756 7.3:+54422135 MS.gene056145:CDS
AGAGAGCTTAGTCTTGATCA+TGG 0.523319 7.3:+54423728 MS.gene056145:CDS
AGAGTTATGTTCACCATCCA+TGG 0.526426 7.3:-54423447 None:intergenic
TGATGATATTTCCAATGGGA+AGG 0.528993 7.3:+54422986 MS.gene056145:CDS
GAGAGCTTAGTCTTGATCAT+GGG 0.530152 7.3:+54423729 MS.gene056145:CDS
TGTGTTTCTTCAATCATGAA+TGG 0.530317 7.3:+54423170 MS.gene056145:CDS
AGACTAAGCTCTCTCATTGG+AGG 0.531678 7.3:-54423719 None:intergenic
TACATGGTCAACCACAAGCT+GGG 0.533174 7.3:+54422529 MS.gene056145:CDS
AATCTAATCAGAAGATTAGA+GGG 0.539524 7.3:+54422169 MS.gene056145:CDS
ATTGATGTCAGGGTTATTCG+AGG 0.539804 7.3:+54422738 MS.gene056145:CDS
ATAACCACACTAGTAGCAAT+GGG 0.543735 7.3:-54422591 None:intergenic
CATAACCACACTAGTAGCAA+TGG 0.544535 7.3:-54422592 None:intergenic
TATGAAGCAGGATCAGAAGT+TGG 0.550833 7.3:+54422674 MS.gene056145:CDS
TGGGCTATGACTAATATAGC+TGG 0.552213 7.3:-54423609 None:intergenic
GCTACTTTGATGAACGATCA+TGG 0.552325 7.3:+54422408 MS.gene056145:CDS
AGAAGAAGTGAATAATAGTA+GGG 0.557866 7.3:+54422365 MS.gene056145:CDS
TCCAATGCAAAATCTAAAGT+AGG 0.560604 7.3:-54423563 None:intergenic
TGGCCATGGTGATATGAAGC+AGG 0.562913 7.3:+54422662 MS.gene056145:CDS
TTGATCATGGGGTAGAAGCT+GGG 0.563836 7.3:+54423741 MS.gene056145:CDS
ATGTGTGTGATTGGTTTACA+TGG 0.563933 7.3:+54422513 MS.gene056145:CDS
ACGATGGCGCGCAATATGGA+AGG 0.564649 7.3:-54422087 None:intergenic
CTCCGGACCATCTCACGATA+CGG 0.564668 7.3:-54422237 None:intergenic
TTACATGGTCAACCACAAGC+TGG 0.564688 7.3:+54422528 MS.gene056145:CDS
TCATCAGAAAGGACATACAT+AGG 0.567324 7.3:-54422969 None:intergenic
TCACCGTCCGTATCGTGAGA+TGG 0.569169 7.3:+54422230 MS.gene056145:CDS
CTTTGTGGAAGCAAGAACAT+TGG 0.569590 7.3:-54423092 None:intergenic
CATTGGAAATATCATCAGAA+AGG 0.571115 7.3:-54422980 None:intergenic
GGAACGAGGCAACCTTGCTA+TGG 0.574021 7.3:+54422695 MS.gene056145:CDS
TTTCTGATGATATTTCCAAT+GGG 0.576995 7.3:+54422982 MS.gene056145:CDS
GGAGACTCTATTATCTACTC+TGG 0.577576 7.3:+54422642 MS.gene056145:CDS
CCACACTAGTAGCAATGGGC+TGG 0.579492 7.3:-54422587 None:intergenic
GCAATATGAGATTGATGTCA+GGG 0.582106 7.3:+54422728 MS.gene056145:CDS
GGATATAATGATGATGATCA+AGG 0.586899 7.3:+54422621 MS.gene056145:CDS
GGGATATACTCAAATTGCAT+AGG 0.587945 7.3:-54423056 None:intergenic
AAATTACGACAGCAACACTC+TGG 0.588133 7.3:+54422131 MS.gene056145:CDS
TTATAAGTTTATGTTATCAA+GGG 0.591362 7.3:+54422869 MS.gene056145:CDS
GACTAAGCTCTCTCATTGGA+GGG 0.593113 7.3:-54423718 None:intergenic
GCATACTTGTCACCATAGCA+AGG 0.603748 7.3:-54422707 None:intergenic
AAAATCTAAAGTAGGATATG+CGG 0.609459 7.3:-54423555 None:intergenic
GTTCAAGGTCAACCTAAGAT+GGG 0.609539 7.3:+54422891 MS.gene056145:CDS
GGAGCTTGTTCACACTGCGA+TGG 0.614223 7.3:+54422200 MS.gene056145:CDS
AGATCTAATGAAACTAGTTG+GGG 0.616648 7.3:+54423335 MS.gene056145:CDS
TCTATTATCTACTCTGGCCA+TGG 0.620402 7.3:+54422648 MS.gene056145:CDS
TTACGACAGCAACACTCTGG+CGG 0.621013 7.3:+54422134 MS.gene056145:CDS
GAAGATTAGAGGGCAGAACA+AGG 0.625199 7.3:+54422179 MS.gene056145:CDS
CTACCCCTTATAGTAAAAGT+GGG 0.630650 7.3:+54423198 MS.gene056145:CDS
ACACGGTTTCTGCAATGCGA+AGG 0.638201 7.3:-54423275 None:intergenic
AGAGCTTAGTCTTGATCATG+GGG 0.638779 7.3:+54423730 MS.gene056145:CDS
CATTGGATGTATCAACGATG+AGG 0.644772 7.3:+54423579 MS.gene056145:CDS
AAATAATCAATCCCAGCTTG+TGG 0.645273 7.3:-54422540 None:intergenic
ATTGCAAATACCATAAGATG+GGG 0.649831 7.3:-54423686 None:intergenic
CCAGCCCATTGCTACTAGTG+TGG 0.655151 7.3:+54422587 MS.gene056145:CDS
AATAGGTCTACTCAAGAATG+GGG 0.657058 7.3:+54423497 MS.gene056145:CDS
GAAGCCAATATGCTTAAGAG+AGG 0.661393 7.3:+54422930 MS.gene056145:CDS
ATATCACCAATACAAACACC+AGG 0.674752 7.3:-54422471 None:intergenic
GCAATTTGAGTATATCCCGA+AGG 0.675237 7.3:+54423061 MS.gene056145:CDS
CAGGATCAGAAGTTGGAACG+AGG 0.676511 7.3:+54422681 MS.gene056145:CDS
CGATGGCGCGCAATATGGAA+GGG 0.676935 7.3:-54422086 None:intergenic
GGAAGGAGAATATTGGCGTG+AGG 0.681400 7.3:+54423003 MS.gene056145:CDS
GATCCTGCTTCATATCACCA+TGG 0.685147 7.3:-54422665 None:intergenic
GGACCATCTCACGATACGGA+CGG 0.685403 7.3:-54422233 None:intergenic
AGGTCGTTGATTTATGAATG+CGG 0.693955 7.3:+54423236 MS.gene056145:CDS
ATTTGAGTATATCCCGAAGG+CGG 0.717156 7.3:+54423064 MS.gene056145:CDS
TTCCACAAAGTATGACGACG+AGG 0.737459 7.3:+54423105 MS.gene056145:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGTTTATGTTATCAA+GGG + chr7.3:54422869-54422888 MS.gene056145:CDS 15.0%
!! TTTATAAGTTTATGTTATCA+AGG + chr7.3:54422868-54422887 MS.gene056145:CDS 15.0%
!!! AAAAGGTATTAAATATAGGT+TGG + chr7.3:54423304-54423323 MS.gene056145:CDS 20.0%
!!! CACAAAAAGGTATTAAATAT+AGG + chr7.3:54423300-54423319 MS.gene056145:CDS 20.0%
! AAATCTAATCAGAAGATTAG+AGG + chr7.3:54422168-54422187 MS.gene056145:CDS 25.0%
! AATCTAATCAGAAGATTAGA+GGG + chr7.3:54422169-54422188 MS.gene056145:CDS 25.0%
! ACATAGGATTATCACATAAT+TGG - chr7.3:54422956-54422975 None:intergenic 25.0%
! ACTAATTGAACAAACACATT+TGG - chr7.3:54423638-54423657 None:intergenic 25.0%
! AGAAGAAGTGAATAATAGTA+GGG + chr7.3:54422365-54422384 MS.gene056145:CDS 25.0%
! TAGATCTAATGAAACTAGTT+GGG + chr7.3:54423334-54423353 MS.gene056145:CDS 25.0%
! TATCATGATGTGAAAATCAT+TGG + chr7.3:54422441-54422460 MS.gene056145:CDS 25.0%
! TGTATAAGATAAGTGAATGT+TGG + chr7.3:54422817-54422836 MS.gene056145:CDS 25.0%
! TTAGATCTAATGAAACTAGT+TGG + chr7.3:54423333-54423352 MS.gene056145:CDS 25.0%
! TTTCTGATGATATTTCCAAT+GGG + chr7.3:54422982-54423001 MS.gene056145:CDS 25.0%
!! AAAATCTAAAGTAGGATATG+CGG - chr7.3:54423558-54423577 None:intergenic 25.0%
!!! AGTAAGGTTTTTGTTTATGA+TGG + chr7.3:54422792-54422811 MS.gene056145:CDS 25.0%
!!! ATCCAAATCGATTTTTGAAT+AGG + chr7.3:54423480-54423499 MS.gene056145:CDS 25.0%
AGATCTAATGAAACTAGTTG+GGG + chr7.3:54423335-54423354 MS.gene056145:CDS 30.0%
ATAAAAGTTCCAGCTAGAAT+AGG - chr7.3:54423377-54423396 None:intergenic 30.0%
ATTGCAAATACCATAAGATG+GGG - chr7.3:54423689-54423708 None:intergenic 30.0%
CAAACAAAATTCTTGTTCTC+CGG - chr7.3:54422257-54422276 None:intergenic 30.0%
CAGAAGAAGTGAATAATAGT+AGG + chr7.3:54422364-54422383 MS.gene056145:CDS 30.0%
CATTGCAAATACCATAAGAT+GGG - chr7.3:54423690-54423709 None:intergenic 30.0%
CATTGGAAATATCATCAGAA+AGG - chr7.3:54422983-54423002 None:intergenic 30.0%
CTTTCTGATGATATTTCCAA+TGG + chr7.3:54422981-54423000 MS.gene056145:CDS 30.0%
GACCTATTCAAAAATCGATT+TGG - chr7.3:54423485-54423504 None:intergenic 30.0%
TAAAAGTTCCAGCTAGAATA+GGG - chr7.3:54423376-54423395 None:intergenic 30.0%
TATTATTCACTTCTTCTGTC+TGG - chr7.3:54422362-54422381 None:intergenic 30.0%
TGTGTTTCTTCAATCATGAA+TGG + chr7.3:54423170-54423189 MS.gene056145:CDS 30.0%
TTCTCTTTGATCATGGTAAT+TGG + chr7.3:54423657-54423676 MS.gene056145:CDS 30.0%
TTTATGTTATCAAGGGTTCA+AGG + chr7.3:54422876-54422895 MS.gene056145:CDS 30.0%
! AAAAGTGGGATTCTTTTGAA+AGG + chr7.3:54423212-54423231 MS.gene056145:CDS 30.0%
! AAATCTAAAGTAGGATATGC+GGG - chr7.3:54423557-54423576 None:intergenic 30.0%
! ACTTTTATATGTGAGTTCAC+CGG + chr7.3:54423389-54423408 MS.gene056145:CDS 30.0%
! CAATTAGTTCTCTTTGATCA+TGG + chr7.3:54423650-54423669 MS.gene056145:CDS 30.0%
! GGATATAATGATGATGATCA+AGG + chr7.3:54422621-54422640 MS.gene056145:CDS 30.0%
! GGTTTGAAAAAGGTATATCT+GGG + chr7.3:54422838-54422857 MS.gene056145:CDS 30.0%
! TAATACCTTTTTGTGTCACA+CGG - chr7.3:54423295-54423314 None:intergenic 30.0%
! TCCAATGCAAAATCTAAAGT+AGG - chr7.3:54423566-54423585 None:intergenic 30.0%
! TCCTACTTTAGATTTTGCAT+TGG + chr7.3:54423562-54423581 MS.gene056145:CDS 30.0%
! TGGTTTGAAAAAGGTATATC+TGG + chr7.3:54422837-54422856 MS.gene056145:CDS 30.0%
!! AAAGTGGGATTCTTTTGAAA+GGG + chr7.3:54423213-54423232 MS.gene056145:CDS 30.0%
!! AATCCCACTTTTACTATAAG+GGG - chr7.3:54423204-54423223 None:intergenic 30.0%
!! AGAATCCCACTTTTACTATA+AGG - chr7.3:54423206-54423225 None:intergenic 30.0%
!! AGTGAATGTTGGTTTGAAAA+AGG + chr7.3:54422828-54422847 MS.gene056145:CDS 30.0%
!! GAATCCCACTTTTACTATAA+GGG - chr7.3:54423205-54423224 None:intergenic 30.0%
AAATAATCAATCCCAGCTTG+TGG - chr7.3:54422543-54422562 None:intergenic 35.0%
AATAGGTCTACTCAAGAATG+GGG + chr7.3:54423497-54423516 MS.gene056145:CDS 35.0%
ACTACCCCTTATAGTAAAAG+TGG + chr7.3:54423197-54423216 MS.gene056145:CDS 35.0%
AGAAGTGAAATGTGTGTGAT+TGG + chr7.3:54422504-54422523 MS.gene056145:CDS 35.0%
ATAACCACACTAGTAGCAAT+GGG - chr7.3:54422594-54422613 None:intergenic 35.0%
ATATCACCAATACAAACACC+AGG - chr7.3:54422474-54422493 None:intergenic 35.0%
CCATCTTATGGTATTTGCAA+TGG + chr7.3:54423688-54423707 MS.gene056145:CDS 35.0%
CCATTGCAAATACCATAAGA+TGG - chr7.3:54423691-54423710 None:intergenic 35.0%
CTACCCCTTATAGTAAAAGT+GGG + chr7.3:54423198-54423217 MS.gene056145:CDS 35.0%
GAATAGGTCTACTCAAGAAT+GGG + chr7.3:54423496-54423515 MS.gene056145:CDS 35.0%
GCAATATGAGATTGATGTCA+GGG + chr7.3:54422728-54422747 MS.gene056145:CDS 35.0%
GGGATATACTCAAATTGCAT+AGG - chr7.3:54423059-54423078 None:intergenic 35.0%
TAGCAGCAATCAAGTCATTT+CGG - chr7.3:54422392-54422411 None:intergenic 35.0%
TCATCAGAAAGGACATACAT+AGG - chr7.3:54422972-54422991 None:intergenic 35.0%
TGAATAGGTCTACTCAAGAA+TGG + chr7.3:54423495-54423514 MS.gene056145:CDS 35.0%
TGATGATATTTCCAATGGGA+AGG + chr7.3:54422986-54423005 MS.gene056145:CDS 35.0%
TGCAATATGAGATTGATGTC+AGG + chr7.3:54422727-54422746 MS.gene056145:CDS 35.0%
TGGTACTTCTACTACTAGTA+AGG + chr7.3:54422776-54422795 MS.gene056145:CDS 35.0%
! CATGCTAGTATGAGTTCTAA+TGG + chr7.3:54422564-54422583 MS.gene056145:CDS 35.0%
! GAAAAAGGTATATCTGGGTT+TGG + chr7.3:54422843-54422862 MS.gene056145:CDS 35.0%
! GAACAAACACATTTGGAGTT+GGG - chr7.3:54423631-54423650 None:intergenic 35.0%
! GTCGTAATTTTGTAACTCGT+CGG - chr7.3:54422121-54422140 None:intergenic 35.0%
! TCGTAATTTTGTAACTCGTC+GGG - chr7.3:54422120-54422139 None:intergenic 35.0%
! TGAACAAACACATTTGGAGT+TGG - chr7.3:54423632-54423651 None:intergenic 35.0%
!! AGGTCGTTGATTTATGAATG+CGG + chr7.3:54423236-54423255 MS.gene056145:CDS 35.0%
!! ATGTGTGTGATTGGTTTACA+TGG + chr7.3:54422513-54422532 MS.gene056145:CDS 35.0%
!! TAAGCATATTGGCTTCCTTA+AGG - chr7.3:54422926-54422945 None:intergenic 35.0%
AAAATCATTGGTCCAGTTCC+TGG + chr7.3:54422453-54422472 MS.gene056145:CDS 40.0%
AAATTACGACAGCAACACTC+TGG + chr7.3:54422131-54422150 MS.gene056145:CDS 40.0%
ACTAGTGTGGTTATGTCTGA+TGG + chr7.3:54422600-54422619 MS.gene056145:CDS 40.0%
AGAAACCGTGTGACACAAAA+AGG + chr7.3:54423287-54423306 MS.gene056145:CDS 40.0%
AGAGTTATGTTCACCATCCA+TGG - chr7.3:54423450-54423469 None:intergenic 40.0%
AGGATCATACTACCCATCTT+AGG - chr7.3:54422906-54422925 None:intergenic 40.0%
ATGAAACTAGTTGGGGAGTT+AGG + chr7.3:54423342-54423361 MS.gene056145:CDS 40.0%
ATTGATGTCAGGGTTATTCG+AGG + chr7.3:54422738-54422757 MS.gene056145:CDS 40.0%
ATTTGAGTATATCCCGAAGG+CGG + chr7.3:54423064-54423083 MS.gene056145:CDS 40.0%
CATAACCACACTAGTAGCAA+TGG - chr7.3:54422595-54422614 None:intergenic 40.0%
CATTGGATGTATCAACGATG+AGG + chr7.3:54423579-54423598 MS.gene056145:CDS 40.0%
CTTTGTGGAAGCAAGAACAT+TGG - chr7.3:54423095-54423114 None:intergenic 40.0%
GAAGCCAATATGCTTAAGAG+AGG + chr7.3:54422930-54422949 MS.gene056145:CDS 40.0%
GATGGGTAGTATGATCCTTA+AGG + chr7.3:54422908-54422927 MS.gene056145:CDS 40.0%
GCAATTTGAGTATATCCCGA+AGG + chr7.3:54423061-54423080 MS.gene056145:CDS 40.0%
GGAGACTCTATTATCTACTC+TGG + chr7.3:54422642-54422661 MS.gene056145:CDS 40.0%
GTTCAAGGTCAACCTAAGAT+GGG + chr7.3:54422891-54422910 MS.gene056145:CDS 40.0%
TATGAAGCAGGATCAGAAGT+TGG + chr7.3:54422674-54422693 MS.gene056145:CDS 40.0%
TCAAGACTAAGCTCTCTCAT+TGG - chr7.3:54423725-54423744 None:intergenic 40.0%
TCCAATGGGAAGGAGAATAT+TGG + chr7.3:54422996-54423015 MS.gene056145:CDS 40.0%
TCTATTATCTACTCTGGCCA+TGG + chr7.3:54422648-54422667 MS.gene056145:CDS 40.0%
TGCGAAGGACAACTACAAAA+AGG - chr7.3:54423263-54423282 None:intergenic 40.0%
TGGGCTATGACTAATATAGC+TGG - chr7.3:54423612-54423631 None:intergenic 40.0%
TTGGATGTTTCCCCATCTTA+TGG + chr7.3:54423676-54423695 MS.gene056145:CDS 40.0%
TTGGCCTCTCTTAAGCATAT+TGG - chr7.3:54422937-54422956 None:intergenic 40.0%
! ATTCGAGGTTTTCGGTATGA+AGG + chr7.3:54422753-54422772 MS.gene056145:CDS 40.0%
! GCTACTTTGATGAACGATCA+TGG + chr7.3:54422408-54422427 MS.gene056145:CDS 40.0%
! GTTTGATTCGATTCGTGTGT+CGG + chr7.3:54422272-54422291 MS.gene056145:CDS 40.0%
! TCAGGGTTATTCGAGGTTTT+CGG + chr7.3:54422745-54422764 MS.gene056145:CDS 40.0%
! TTTGATTCGATTCGTGTGTC+GGG + chr7.3:54422273-54422292 MS.gene056145:CDS 40.0%
!! AGAGAGCTTAGTCTTGATCA+TGG + chr7.3:54423728-54423747 MS.gene056145:CDS 40.0%
!! AGAGCTTAGTCTTGATCATG+GGG + chr7.3:54423730-54423749 MS.gene056145:CDS 40.0%
!! GAGAGCTTAGTCTTGATCAT+GGG + chr7.3:54423729-54423748 MS.gene056145:CDS 40.0%
!! GCAAGCAGAAATTTTGACCA+TGG + chr7.3:54423430-54423449 MS.gene056145:CDS 40.0%
!! GCAGAAATTTTGACCATGGA+TGG + chr7.3:54423434-54423453 MS.gene056145:CDS 40.0%
AACATTGGAAATGCCGCCTT+CGG - chr7.3:54423080-54423099 None:intergenic 45.0%
AGACTAAGCTCTCTCATTGG+AGG - chr7.3:54423722-54423741 None:intergenic 45.0%
CCAATACAAACACCAGGAAC+TGG - chr7.3:54422468-54422487 None:intergenic 45.0%
CCAGTTCCTGGTGTTTGTAT+TGG + chr7.3:54422465-54422484 MS.gene056145:CDS 45.0%
CTCCCTAGTCAAAACAAGTC+CGG - chr7.3:54423411-54423430 None:intergenic 45.0%
GAAGATTAGAGGGCAGAACA+AGG + chr7.3:54422179-54422198 MS.gene056145:CDS 45.0%
GACTAAGCTCTCTCATTGGA+GGG - chr7.3:54423721-54423740 None:intergenic 45.0%
GATCCTGCTTCATATCACCA+TGG - chr7.3:54422668-54422687 None:intergenic 45.0%
GCATACTTGTCACCATAGCA+AGG - chr7.3:54422710-54422729 None:intergenic 45.0%
GCCAATATTCTCCTTCCCAT+TGG - chr7.3:54423000-54423019 None:intergenic 45.0%
GGTTCAAGGTCAACCTAAGA+TGG + chr7.3:54422890-54422909 MS.gene056145:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG + chr7.3:54422529-54422548 MS.gene056145:CDS 45.0%
TAGTTGGGGAGTTAGGTCTT+TGG + chr7.3:54423349-54423368 MS.gene056145:CDS 45.0%
TCTTTGGACCCTATTCTAGC+TGG + chr7.3:54423365-54423384 MS.gene056145:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG + chr7.3:54422528-54422547 MS.gene056145:CDS 45.0%
TTCCACAAAGTATGACGACG+AGG + chr7.3:54423105-54423124 MS.gene056145:CDS 45.0%
TTCCTCGTCGTCATACTTTG+TGG - chr7.3:54423110-54423129 None:intergenic 45.0%
TTGATCATGGGGTAGAAGCT+GGG + chr7.3:54423741-54423760 MS.gene056145:CDS 45.0%
! GAGTGTTCTGAATGCGTTGA+TGG + chr7.3:54423146-54423165 MS.gene056145:CDS 45.0%
!! GTGGGATTCTTTTGAAAGGG+AGG + chr7.3:54423216-54423235 MS.gene056145:CDS 45.0%
!!! CACCGGACTTGTTTTGACTA+GGG + chr7.3:54423406-54423425 MS.gene056145:CDS 45.0%
!!! TCACCGGACTTGTTTTGACT+AGG + chr7.3:54423405-54423424 MS.gene056145:CDS 45.0%
ACACGGTTTCTGCAATGCGA+AGG - chr7.3:54423278-54423297 None:intergenic 50.0%
ACATTGGAAATGCCGCCTTC+GGG - chr7.3:54423079-54423098 None:intergenic 50.0%
CAGGATCAGAAGTTGGAACG+AGG + chr7.3:54422681-54422700 MS.gene056145:CDS 50.0%
CTTGATCATGGGGTAGAAGC+TGG + chr7.3:54423740-54423759 MS.gene056145:CDS 50.0%
GGAAGGAGAATATTGGCGTG+AGG + chr7.3:54423003-54423022 MS.gene056145:CDS 50.0%
TGGCCATGGTGATATGAAGC+AGG + chr7.3:54422662-54422681 MS.gene056145:CDS 50.0%
TTACGACAGCAACACTCTGG+CGG + chr7.3:54422134-54422153 MS.gene056145:CDS 50.0%
! CGAGGTTTTCGGTATGAAGG+TGG + chr7.3:54422756-54422775 MS.gene056145:CDS 50.0%
! TTTTGTAACTCGTCGGGACC+TGG - chr7.3:54422114-54422133 None:intergenic 50.0%
ACGATGGCGCGCAATATGGA+AGG - chr7.3:54422090-54422109 None:intergenic 55.0%
ATATTGCGCGCCATCGTTCC+AGG + chr7.3:54422093-54422112 MS.gene056145:CDS 55.0%
CCACACTAGTAGCAATGGGC+TGG - chr7.3:54422590-54422609 None:intergenic 55.0%
CCAGCCCATTGCTACTAGTG+TGG + chr7.3:54422587-54422606 MS.gene056145:CDS 55.0%
CGATGGCGCGCAATATGGAA+GGG - chr7.3:54422089-54422108 None:intergenic 55.0%
CTCCGGACCATCTCACGATA+CGG - chr7.3:54422240-54422259 None:intergenic 55.0%
GATTCGTGTGTCGGGTTTGC+TGG + chr7.3:54422281-54422300 MS.gene056145:CDS 55.0%
GCGCGCAATATGGAAGGGTT+TGG - chr7.3:54422084-54422103 None:intergenic 55.0%
GGAACGAGGCAACCTTGCTA+TGG + chr7.3:54422695-54422714 MS.gene056145:CDS 55.0%
GGACCATCTCACGATACGGA+CGG - chr7.3:54422236-54422255 None:intergenic 55.0%
GTCCGTATCGTGAGATGGTC+CGG + chr7.3:54422235-54422254 MS.gene056145:CDS 55.0%
TACGACAGCAACACTCTGGC+GGG + chr7.3:54422135-54422154 MS.gene056145:CDS 55.0%
TCACCGTCCGTATCGTGAGA+TGG + chr7.3:54422230-54422249 MS.gene056145:CDS 55.0%
TGGAACGATGGCGCGCAATA+TGG - chr7.3:54422094-54422113 None:intergenic 55.0%
! GGAGCTTGTTCACACTGCGA+TGG + chr7.3:54422200-54422219 MS.gene056145:CDS 55.0%
CTCGTCGGGACCTGGAACGA+TGG - chr7.3:54422106-54422125 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 54422066 54423766 54422066 ID=MS.gene056145
chr7.3 mRNA 54422066 54423766 54422066 ID=MS.gene056145.t1;Parent=MS.gene056145
chr7.3 exon 54422066 54423766 54422066 ID=MS.gene056145.t1.exon1;Parent=MS.gene056145.t1
chr7.3 CDS 54422066 54423766 54422066 ID=cds.MS.gene056145.t1;Parent=MS.gene056145.t1
Gene Sequence

>MS.gene056145

ATGAATTTTCAAGATCCAAACCCTTCCATATTGCGCGCCATCGTTCCAGGTCCCGACGAGTTACAAAATTACGACAGCAACACTCTGGCGGGAAAAGCTTCAAAATCTAATCAGAAGATTAGAGGGCAGAACAAGGAGCTTGTTCACACTGCGATGGATGCTGATCACCGTCCGTATCGTGAGATGGTCCGGAGAACAAGAATTTTGTTTGATTCGATTCGTGTGTCGGGTTTGCTGGAAGAAGAGAATAATCGTAAGAACAAGAAGTATTTGAAAACTTCTTCTTTGATAAACCAGACAGAAGAAGTGAATAATAGTAGGGTCCGAAATGACTTGATTGCTGCTACTTTGATGAACGATCATGGTATGTATTTGTATCATGATGTGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGTGATATTTTTCTCTATAGAAGTGAAATGTGTGTGATTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCCAGCCCATTGCTACTAGTGTGGTTATGTCTGATGGATATAATGATGATGATCAAGGAGACTCTATTATCTACTCTGGCCATGGTGATATGAAGCAGGATCAGAAGTTGGAACGAGGCAACCTTGCTATGGTGACAAGTATGCAATATGAGATTGATGTCAGGGTTATTCGAGGTTTTCGGTATGAAGGTGGTACTTCTACTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAAGTGAATGTTGGTTTGAAAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTATGTTATCAAGGGTTCAAGGTCAACCTAAGATGGGTAGTATGATCCTTAAGGAAGCCAATATGCTTAAGAGAGGCCAATTATGTGATAATCCTATGTATGTCCTTTCTGATGATATTTCCAATGGGAAGGAGAATATTGGCGTGAGGCTATATAATGACATTGATAGTGATCTCTATCCTATGCAATTTGAGTATATCCCGAAGGCGGCATTTCCAATGTTCTTGCTTCCACAAAGTATGACGACGAGGAAAAAGATGAGAGCGATAGAGTGTTCTGAATGCGTTGATGGATGTGTTTCTTCAATCATGAATGGTAACACTACCCCTTATAGTAAAAGTGGGATTCTTTTGAAAGGGAGGTCGTTGATTTATGAATGCGGTCCTTTTTGTAGTTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATATAGGTTGGAAGTGTTTAGATCTAATGAAACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTCTAGCTGGAACTTTTATATGTGAGTTCACCGGACTTGTTTTGACTAGGGAGCAAGCAGAAATTTTGACCATGGATGGTGAACATAACTCTTTGATTATATATCCAAATCGATTTTTGAATAGGTCTACTCAAGAATGGGGATATTTGTCGATGATTGATGTTAATCATGTGCATCCCGCATATCCTACTTTAGATTTTGCATTGGATGTATCAACGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTTTGATCATGGTAATTGGATGTTTCCCCATCTTATGGTATTTGCAATGGAAAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGGGTAGAAGCTGGGTAG
Protein sequence

>MS.gene056145.t1

MNFQDPNPSILRAIVPGPDELQNYDSNTLAGKASKSNQKIRGQNKELVHTAMDADHRPYREMVRRTRILFDSIRVSGLLEEENNRKNKKYLKTSSLINQTEEVNNSRVRNDLIAATLMNDHGMYLYHDVKIIGPVPGVCIGDIFLYRSEMCVIGLHGQPQAGIDYLHASMSSNGQPIATSVVMSDGYNDDDQGDSIIYSGHGDMKQDQKLERGNLAMVTSMQYEIDVRVIRGFRYEGGTSTTSKVFVYDGLYKISECWFEKGISGFGVYKFMLSRVQGQPKMGSMILKEANMLKRGQLCDNPMYVLSDDISNGKENIGVRLYNDIDSDLYPMQFEYIPKAAFPMFLLPQSMTTRKKMRAIECSECVDGCVSSIMNGNTTPYSKSGILLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEHNSLIIYPNRFLNRSTQEWGYLSMIDVNHVHPAYPTLDFALDVSTMRNVASYISHSPTPNVFVQLVLFDHGNWMFPHLMVFAMENIPPMRELSLDHGVEAG