Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056231.t1 | XP_003627845.1 | 93 | 327 | 21 | 1 | 1 | 325 | 1 | 327 | 2.60E-110 | 408.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056231.t1 | Q94CK9 | 60.7 | 191 | 71 | 3 | 122 | 312 | 112 | 298 | 6.3e-33 | 142.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056231.t1 | G7LG16 | 93.0 | 327 | 21 | 1 | 1 | 325 | 1 | 327 | 1.8e-110 | 408.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene056231.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056231.t1 | MTR_8g039110 | 95.719 | 327 | 12 | 1 | 1 | 325 | 1 | 327 | 0.0 | 658 |
| MS.gene056231.t1 | MTR_0363s0040 | 92.130 | 216 | 15 | 1 | 1 | 214 | 1 | 216 | 8.06e-127 | 362 |
| MS.gene056231.t1 | MTR_3g014660 | 61.224 | 343 | 99 | 16 | 1 | 324 | 1 | 328 | 1.55e-112 | 330 |
| MS.gene056231.t1 | MTR_5g089750 | 44.074 | 270 | 124 | 8 | 42 | 296 | 159 | 416 | 4.01e-51 | 176 |
| MS.gene056231.t1 | MTR_8g076620 | 40.698 | 172 | 73 | 2 | 109 | 280 | 108 | 250 | 5.79e-34 | 127 |
| MS.gene056231.t1 | MTR_5g021130 | 44.099 | 161 | 83 | 2 | 122 | 282 | 100 | 253 | 9.29e-33 | 124 |
| MS.gene056231.t1 | MTR_3g112510 | 38.710 | 186 | 82 | 6 | 122 | 302 | 86 | 244 | 1.01e-29 | 115 |
| MS.gene056231.t1 | MTR_4g071110 | 36.782 | 174 | 72 | 4 | 111 | 284 | 6 | 141 | 7.77e-25 | 101 |
| MS.gene056231.t1 | MTR_1g023230 | 75.556 | 45 | 11 | 0 | 122 | 166 | 122 | 166 | 3.97e-18 | 82.8 |
| MS.gene056231.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 124 | 156 | 44 | 76 | 1.66e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056231.t1 | AT5G12330 | 39.077 | 325 | 176 | 8 | 1 | 320 | 1 | 308 | 1.96e-56 | 186 |
| MS.gene056231.t1 | AT5G12330 | 39.077 | 325 | 176 | 8 | 1 | 320 | 1 | 308 | 1.96e-56 | 186 |
| MS.gene056231.t1 | AT5G12330 | 39.077 | 325 | 176 | 8 | 1 | 320 | 88 | 395 | 5.28e-56 | 187 |
| MS.gene056231.t1 | AT3G54430 | 44.571 | 175 | 65 | 4 | 120 | 293 | 39 | 182 | 1.72e-38 | 135 |
| MS.gene056231.t1 | AT1G75520 | 44.444 | 162 | 83 | 3 | 122 | 280 | 125 | 282 | 1.87e-37 | 137 |
| MS.gene056231.t1 | AT5G66350 | 43.575 | 179 | 83 | 3 | 109 | 287 | 107 | 267 | 7.55e-37 | 135 |
| MS.gene056231.t1 | AT5G66350 | 43.575 | 179 | 83 | 3 | 109 | 287 | 107 | 267 | 9.42e-37 | 135 |
| MS.gene056231.t1 | AT5G66350 | 43.575 | 179 | 83 | 3 | 109 | 287 | 107 | 267 | 9.52e-37 | 134 |
| MS.gene056231.t1 | AT3G51060 | 45.625 | 160 | 63 | 4 | 122 | 278 | 144 | 282 | 1.29e-34 | 130 |
| MS.gene056231.t1 | AT1G19790 | 43.210 | 162 | 78 | 3 | 122 | 280 | 119 | 269 | 3.03e-33 | 125 |
| MS.gene056231.t1 | AT1G19790 | 43.210 | 162 | 78 | 3 | 122 | 280 | 119 | 269 | 3.03e-33 | 125 |
| MS.gene056231.t1 | AT4G36260 | 33.921 | 227 | 131 | 5 | 59 | 280 | 32 | 244 | 4.32e-30 | 117 |
| MS.gene056231.t1 | AT2G21400 | 38.272 | 162 | 71 | 4 | 120 | 281 | 7 | 139 | 1.61e-29 | 112 |
| MS.gene056231.t1 | AT2G21400 | 38.272 | 162 | 71 | 4 | 120 | 281 | 8 | 140 | 1.67e-29 | 112 |
| MS.gene056231.t1 | AT2G18120 | 37.195 | 164 | 73 | 3 | 122 | 284 | 72 | 206 | 2.12e-29 | 112 |
| MS.gene056231.t1 | AT2G18120 | 36.810 | 163 | 77 | 3 | 122 | 284 | 72 | 208 | 2.18e-29 | 112 |
| MS.gene056231.t1 | AT2G21400 | 35.802 | 162 | 60 | 2 | 120 | 281 | 8 | 125 | 7.52e-28 | 107 |
| MS.gene056231.t1 | AT2G21400 | 35.802 | 162 | 60 | 2 | 120 | 281 | 7 | 124 | 8.04e-28 | 107 |
| MS.gene056231.t1 | AT5G12330 | 37.089 | 213 | 117 | 6 | 1 | 208 | 1 | 201 | 8.32e-27 | 105 |
| MS.gene056231.t1 | AT5G33210 | 70.000 | 50 | 15 | 0 | 122 | 171 | 17 | 66 | 2.98e-20 | 84.7 |
| MS.gene056231.t1 | AT5G33210 | 70.000 | 50 | 15 | 0 | 122 | 171 | 52 | 101 | 3.01e-19 | 84.0 |
Find 68 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAAAATGGTGAGTTTA+GGG | 0.286532 | 8.1:-65078626 | MS.gene056231:CDS |
| ATATTCTCATTGTTATTGTT+AGG | 0.304242 | 8.1:+65078778 | None:intergenic |
| GTGAAGAAAATGGTGAGTTT+AGG | 0.324594 | 8.1:-65078627 | MS.gene056231:CDS |
| CTATTAGAACCAAGTCTCTT+AGG | 0.357173 | 8.1:+65078950 | None:intergenic |
| TGAAGATGAACTTGCTTACT+TGG | 0.373159 | 8.1:-65077668 | MS.gene056231:CDS |
| AGTGATGGTGGTGCTTCTTC+TGG | 0.380721 | 8.1:-65078439 | MS.gene056231:CDS |
| GATGAAGGTAAGGGAATGTT+TGG | 0.393591 | 8.1:+65078868 | None:intergenic |
| TATTCTCATTGTTATTGTTA+GGG | 0.402170 | 8.1:+65078779 | None:intergenic |
| ATGTTCTTCCTCTGCAATTG+AGG | 0.420350 | 8.1:-65077512 | MS.gene056231:CDS |
| TGCCAACAGCAGATACTCTA+TGG | 0.431824 | 8.1:+65077695 | None:intergenic |
| CGGCGTCGATGAGGCGGGAC+CGG | 0.436701 | 8.1:-65078489 | MS.gene056231:CDS |
| TGTTGGTTGTGAAGTGATGA+AGG | 0.446919 | 8.1:+65078919 | None:intergenic |
| TGGATTATGATCTGATGAAA+TGG | 0.452099 | 8.1:+65078888 | None:intergenic |
| TATGATCTGATGAAATGGTT+TGG | 0.460879 | 8.1:+65078893 | None:intergenic |
| TTTAGGGTTTGTCAAGATTG+TGG | 0.461202 | 8.1:-65078610 | MS.gene056231:CDS |
| GAATTGCAACTTGGAAGTAA+TGG | 0.469782 | 8.1:-65077556 | MS.gene056231:CDS |
| CAATCTCAACAAGCAGAAGC+AGG | 0.470698 | 8.1:+65077472 | None:intergenic |
| TAGTGCTGATGATGAAGGTA+AGG | 0.474808 | 8.1:+65078858 | None:intergenic |
| ATGATGGGGTGTGAAGAAAA+TGG | 0.479641 | 8.1:-65078637 | MS.gene056231:CDS |
| TCATCATTACTTGTTGTGGT+TGG | 0.483361 | 8.1:+65078719 | None:intergenic |
| TCAGCACTAAGTGTTGGTCT+TGG | 0.487088 | 8.1:-65078844 | MS.gene056231:CDS |
| AAAGGGTTTCTCTATGATCA+AGG | 0.488489 | 8.1:-65077616 | MS.gene056231:CDS |
| CATGTTAGGCCTAAGAGACT+TGG | 0.493330 | 8.1:-65078959 | MS.gene056231:CDS |
| TTCATCATCATTACTTGTTG+TGG | 0.498315 | 8.1:+65078715 | None:intergenic |
| AATCAAAATTCTCTGCCTCT+TGG | 0.499143 | 8.1:+65078414 | None:intergenic |
| CGTGAAGAGCACGTGGATAC+CGG | 0.501925 | 8.1:-65078509 | MS.gene056231:CDS |
| GAAGCAGGGTAAGCACTAGT+TGG | 0.512667 | 8.1:+65077487 | None:intergenic |
| ATTGTAGCTATAAAAGATGC+AGG | 0.519421 | 8.1:-65078570 | MS.gene056231:CDS |
| CAACTTGGAAGTAATGGAAG+TGG | 0.519956 | 8.1:-65077550 | MS.gene056231:CDS |
| GGTGAGTAGTGGTTAGGAGT+GGG | 0.529385 | 8.1:+65078815 | None:intergenic |
| TAAGTGGCCATGTATTCAAA+GGG | 0.529963 | 8.1:-65077633 | MS.gene056231:CDS |
| GGCAAAGTCTGCTTGAAACC+AGG | 0.531084 | 8.1:+65077751 | None:intergenic |
| AGAGAAACCCTTTGAATACA+TGG | 0.531479 | 8.1:+65077626 | None:intergenic |
| ATAAGTGGCCATGTATTCAA+AGG | 0.532258 | 8.1:-65077634 | MS.gene056231:CDS |
| TTGGCTACTGTGAATATAAG+TGG | 0.534470 | 8.1:-65077649 | MS.gene056231:CDS |
| GCAGGCGCGCGAACATAGCG+AGG | 0.545668 | 8.1:+65077730 | None:intergenic |
| AGGACTTGTTGTAAAGGTCG+TGG | 0.546270 | 8.1:-65078550 | MS.gene056231:CDS |
| GATGAGGGTGAGTAGTGGTT+AGG | 0.546291 | 8.1:+65078809 | None:intergenic |
| AGATGCAGGACTTGTTGTAA+AGG | 0.546985 | 8.1:-65078556 | MS.gene056231:CDS |
| TCATCATCACAGAATAATGC+TGG | 0.553164 | 8.1:-65078391 | MS.gene056231:CDS |
| GCTTAAACTTCTTGTTCTAG+TGG | 0.556742 | 8.1:+65078336 | None:intergenic |
| CTATGGCACTTGAAAACAGC+AGG | 0.559201 | 8.1:+65077712 | None:intergenic |
| GGGTGAGTAGTGGTTAGGAG+TGG | 0.563980 | 8.1:+65078814 | None:intergenic |
| GATACCGGCGTCGATGAGGC+GGG | 0.565411 | 8.1:-65078494 | MS.gene056231:CDS |
| ACACTTAGTGCTGATGATGA+AGG | 0.573973 | 8.1:+65078853 | None:intergenic |
| TGTGTTTCAGAATTGCAACT+TGG | 0.580875 | 8.1:-65077565 | MS.gene056231:CDS |
| TGCCATAGAGTATCTGCTGT+TGG | 0.581569 | 8.1:-65077697 | MS.gene056231:CDS |
| TTGATGATGAGGGTGAGTAG+TGG | 0.583936 | 8.1:+65078804 | None:intergenic |
| GAGGCGGGACCGGAGTATGA+TGG | 0.586244 | 8.1:-65078479 | MS.gene056231:CDS |
| CGGAGTATGATGGTGGCTGA+AGG | 0.587151 | 8.1:-65078469 | MS.gene056231:CDS |
| GCTGAAGGTGGTGACAGTGA+TGG | 0.591111 | 8.1:-65078454 | MS.gene056231:CDS |
| GGATACCGGCGTCGATGAGG+CGG | 0.591264 | 8.1:-65078495 | MS.gene056231:CDS |
| GAAGGTGGTGACAGTGATGG+TGG | 0.597594 | 8.1:-65078451 | MS.gene056231:CDS |
| CGTGGATACCGGCGTCGATG+AGG | 0.610218 | 8.1:-65078498 | MS.gene056231:CDS |
| AGAGTATCTGCTGTTGGCAA+TGG | 0.611315 | 8.1:-65077691 | MS.gene056231:CDS |
| TCATCATCAGCACTAAGTGT+TGG | 0.620780 | 8.1:-65078850 | MS.gene056231:CDS |
| AGTGCTGATGATGAAGGTAA+GGG | 0.621262 | 8.1:+65078859 | None:intergenic |
| GTTGTGGTTGGCACATCTTG+AGG | 0.623886 | 8.1:+65078731 | None:intergenic |
| AATCTCAACAAGCAGAAGCA+GGG | 0.625538 | 8.1:+65077473 | None:intergenic |
| CGGTCCCGCCTCATCGACGC+CGG | 0.629933 | 8.1:+65078490 | None:intergenic |
| GCGGGACCGGAGTATGATGG+TGG | 0.640592 | 8.1:-65078476 | MS.gene056231:CDS |
| GTGCTTCTTCTGGTACCAAG+AGG | 0.651535 | 8.1:-65078429 | MS.gene056231:CDS |
| CTTCAGCCACCATCATACTC+CGG | 0.656848 | 8.1:+65078470 | None:intergenic |
| AGTATGATGGTGGCTGAAGG+TGG | 0.658861 | 8.1:-65078466 | MS.gene056231:CDS |
| ATAACTAGCTCTTGTCACCA+AGG | 0.669802 | 8.1:-65078307 | MS.gene056231:intron |
| AGTTGGAACCTCAATTGCAG+AGG | 0.675832 | 8.1:+65077504 | None:intergenic |
| GTACTCACGTGAAGAGCACG+TGG | 0.684544 | 8.1:-65078516 | MS.gene056231:CDS |
| AGTTGCAATTCTGAAACACA+AGG | 0.685469 | 8.1:+65077568 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATGATTATTTAATCA+TGG | + | chr8.1:65078177-65078196 | None:intergenic | 10.0% |
| !!! | TTGTTATTTCATAAATTTAA+GGG | - | chr8.1:65078421-65078440 | MS.gene056231:CDS | 10.0% |
| !!! | TTTGTTATTTCATAAATTTA+AGG | - | chr8.1:65078420-65078439 | MS.gene056231:CDS | 10.0% |
| !! | ATTAAAAAAAGTGAGTAAAT+AGG | + | chr8.1:65078490-65078509 | None:intergenic | 15.0% |
| !!! | GTTTACAAAACTTTTTTTTA+TGG | - | chr8.1:65078203-65078222 | MS.gene056231:intron | 15.0% |
| !!! | ATATTCTCATTGTTATTGTT+AGG | + | chr8.1:65077666-65077685 | None:intergenic | 20.0% |
| !!! | TATTCTCATTGTTATTGTTA+GGG | + | chr8.1:65077665-65077684 | None:intergenic | 20.0% |
| !!! | TCATTGTTACTTTATAAACT+AGG | - | chr8.1:65078513-65078532 | MS.gene056231:CDS | 20.0% |
| !!! | TTTTTCTATTAACCAAACTT+AGG | + | chr8.1:65078569-65078588 | None:intergenic | 20.0% |
| ! | AAGAAACAAAAACTTGATGA+TGG | - | chr8.1:65077788-65077807 | MS.gene056231:intron | 25.0% |
| ! | AATTGTGTATATCCTAAGTT+TGG | - | chr8.1:65078554-65078573 | MS.gene056231:CDS | 25.0% |
| !! | AGAAACAAAAACTTGATGAT+GGG | - | chr8.1:65077789-65077808 | MS.gene056231:intron | 25.0% |
| ATCAATCAATTTAGTCTCAG+AGG | + | chr8.1:65078380-65078399 | None:intergenic | 30.0% | |
| ATTGTAGCTATAAAAGATGC+AGG | - | chr8.1:65077871-65077890 | MS.gene056231:intron | 30.0% | |
| CGGATAATGATTTACAGAAA+TGG | - | chr8.1:65078281-65078300 | MS.gene056231:intron | 30.0% | |
| TATGATCTGATGAAATGGTT+TGG | + | chr8.1:65077551-65077570 | None:intergenic | 30.0% | |
| TGAAGAAAATGGTGAGTTTA+GGG | - | chr8.1:65077815-65077834 | MS.gene056231:intron | 30.0% | |
| TGGATTATGATCTGATGAAA+TGG | + | chr8.1:65077556-65077575 | None:intergenic | 30.0% | |
| ! | TTCATCATCATTACTTGTTG+TGG | + | chr8.1:65077729-65077748 | None:intergenic | 30.0% |
| !! | AACAAAAAGTGAAAGTACCT+TGG | + | chr8.1:65078154-65078173 | None:intergenic | 30.0% |
| !! | GAAACAAAAACTTGATGATG+GGG | - | chr8.1:65077790-65077809 | MS.gene056231:intron | 30.0% |
| !!! | ATGAAATGGTTTGGTTTTGT+TGG | + | chr8.1:65077542-65077561 | None:intergenic | 30.0% |
| AAAGGGTTTCTCTATGATCA+AGG | - | chr8.1:65078825-65078844 | MS.gene056231:CDS | 35.0% | |
| AATCAAAATTCTCTGCCTCT+TGG | + | chr8.1:65078030-65078049 | None:intergenic | 35.0% | |
| AGAGAAACCCTTTGAATACA+TGG | + | chr8.1:65078818-65078837 | None:intergenic | 35.0% | |
| ATAAGTGGCCATGTATTCAA+AGG | - | chr8.1:65078807-65078826 | MS.gene056231:CDS | 35.0% | |
| CTATTAGAACCAAGTCTCTT+AGG | + | chr8.1:65077494-65077513 | None:intergenic | 35.0% | |
| CTGTAAATCATTATCCGTGT+CGG | + | chr8.1:65078278-65078297 | None:intergenic | 35.0% | |
| GAATTGCAACTTGGAAGTAA+TGG | - | chr8.1:65078885-65078904 | MS.gene056231:CDS | 35.0% | |
| GCATAATCCAGTGTAATCAT+AGG | - | chr8.1:65078303-65078322 | MS.gene056231:intron | 35.0% | |
| GCTTAAACTTCTTGTTCTAG+TGG | + | chr8.1:65078108-65078127 | None:intergenic | 35.0% | |
| GTGAAGAAAATGGTGAGTTT+AGG | - | chr8.1:65077814-65077833 | MS.gene056231:intron | 35.0% | |
| TAAGTGGCCATGTATTCAAA+GGG | - | chr8.1:65078808-65078827 | MS.gene056231:CDS | 35.0% | |
| TCATCATCACAGAATAATGC+TGG | - | chr8.1:65078050-65078069 | MS.gene056231:intron | 35.0% | |
| TGGTTAATAGAAAAATGCCC+CGG | - | chr8.1:65078574-65078593 | MS.gene056231:CDS | 35.0% | |
| TGTGTTTCAGAATTGCAACT+TGG | - | chr8.1:65078876-65078895 | MS.gene056231:CDS | 35.0% | |
| TTGGCTACTGTGAATATAAG+TGG | - | chr8.1:65078792-65078811 | MS.gene056231:CDS | 35.0% | |
| ! | TGAAGATGAACTTGCTTACT+TGG | - | chr8.1:65078773-65078792 | MS.gene056231:CDS | 35.0% |
| ! | TTCATCAAGACTCGAGTTTT+TGG | - | chr8.1:65077685-65077704 | MS.gene056231:CDS | 35.0% |
| ! | TTTAGGGTTTGTCAAGATTG+TGG | - | chr8.1:65077831-65077850 | MS.gene056231:intron | 35.0% |
| !! | AGTTGCAATTCTGAAACACA+AGG | + | chr8.1:65078876-65078895 | None:intergenic | 35.0% |
| !! | TCATCATTACTTGTTGTGGT+TGG | + | chr8.1:65077725-65077744 | None:intergenic | 35.0% |
| !!! | TGTTAGGGTTTTGATGATGA+GGG | + | chr8.1:65077650-65077669 | None:intergenic | 35.0% |
| !!! | TTGTTAGGGTTTTGATGATG+AGG | + | chr8.1:65077651-65077670 | None:intergenic | 35.0% |
| ATGTTCTTCCTCTGCAATTG+AGG | - | chr8.1:65078929-65078948 | MS.gene056231:CDS | 40.0% | |
| GATGAAGGTAAGGGAATGTT+TGG | + | chr8.1:65077576-65077595 | None:intergenic | 40.0% | |
| TCATCATCAGCACTAAGTGT+TGG | - | chr8.1:65077591-65077610 | MS.gene056231:CDS | 40.0% | |
| TGTTTGTGAATTGCAGATCC+TGG | - | chr8.1:65078672-65078691 | MS.gene056231:CDS | 40.0% | |
| TTAATAGAAAAATGCCCCGG+AGG | - | chr8.1:65078577-65078596 | MS.gene056231:CDS | 40.0% | |
| ! | ATAACTAGCTCTTGTCACCA+AGG | - | chr8.1:65078134-65078153 | MS.gene056231:intron | 40.0% |
| ! | ATGATGGGGTGTGAAGAAAA+TGG | - | chr8.1:65077804-65077823 | MS.gene056231:intron | 40.0% |
| ! | CAACTTGGAAGTAATGGAAG+TGG | - | chr8.1:65078891-65078910 | MS.gene056231:CDS | 40.0% |
| ! | TGTAATCATAGGTGTCGTGT+CGG | - | chr8.1:65078314-65078333 | MS.gene056231:CDS | 40.0% |
| ! | TGTTGGTTGTGAAGTGATGA+AGG | + | chr8.1:65077525-65077544 | None:intergenic | 40.0% |
| !! | ACACTTAGTGCTGATGATGA+AGG | + | chr8.1:65077591-65077610 | None:intergenic | 40.0% |
| !! | AGATGCAGGACTTGTTGTAA+AGG | - | chr8.1:65077885-65077904 | MS.gene056231:intron | 40.0% |
| !! | AGTGCTGATGATGAAGGTAA+GGG | + | chr8.1:65077585-65077604 | None:intergenic | 40.0% |
| !! | TAGTGCTGATGATGAAGGTA+AGG | + | chr8.1:65077586-65077605 | None:intergenic | 40.0% |
| AGTTGGAACCTCAATTGCAG+AGG | + | chr8.1:65078940-65078959 | None:intergenic | 45.0% | |
| CACGACACCTATGATTACAC+TGG | + | chr8.1:65078313-65078332 | None:intergenic | 45.0% | |
| CATGTTAGGCCTAAGAGACT+TGG | - | chr8.1:65077482-65077501 | MS.gene056231:CDS | 45.0% | |
| CTATGGCACTTGAAAACAGC+AGG | + | chr8.1:65078732-65078751 | None:intergenic | 45.0% | |
| GTCAGAGAGGTAGACACAAT+TGG | - | chr8.1:65078614-65078633 | MS.gene056231:CDS | 45.0% | |
| TGCCAACAGCAGATACTCTA+TGG | + | chr8.1:65078749-65078768 | None:intergenic | 45.0% | |
| TGTCCGTGTTTCATAGGTCT+CGG | + | chr8.1:65078229-65078248 | None:intergenic | 45.0% | |
| ! | AGAGTATCTGCTGTTGGCAA+TGG | - | chr8.1:65078750-65078769 | MS.gene056231:CDS | 45.0% |
| ! | TGCCATAGAGTATCTGCTGT+TGG | - | chr8.1:65078744-65078763 | MS.gene056231:CDS | 45.0% |
| !! | AGGACTTGTTGTAAAGGTCG+TGG | - | chr8.1:65077891-65077910 | MS.gene056231:intron | 45.0% |
| !! | ATTTAGTCTCAGAGGTGTCC+TGG | + | chr8.1:65078372-65078391 | None:intergenic | 45.0% |
| !! | TCAGCACTAAGTGTTGGTCT+TGG | - | chr8.1:65077597-65077616 | MS.gene056231:CDS | 45.0% |
| !! | TTGATGATGAGGGTGAGTAG+TGG | + | chr8.1:65077640-65077659 | None:intergenic | 45.0% |
| CGAACACGAACATACCGACA+CGG | - | chr8.1:65078261-65078280 | MS.gene056231:intron | 50.0% | |
| CTTCAGCCACCATCATACTC+CGG | + | chr8.1:65077974-65077993 | None:intergenic | 50.0% | |
| GAAGCAGGGTAAGCACTAGT+TGG | + | chr8.1:65078957-65078976 | None:intergenic | 50.0% | |
| GATGAGGGTGAGTAGTGGTT+AGG | + | chr8.1:65077635-65077654 | None:intergenic | 50.0% | |
| GGCAAAGTCTGCTTGAAACC+AGG | + | chr8.1:65078693-65078712 | None:intergenic | 50.0% | |
| GGTGAGTAGTGGTTAGGAGT+GGG | + | chr8.1:65077629-65077648 | None:intergenic | 50.0% | |
| GTCTGGTGTCCGTGTTTCAT+AGG | + | chr8.1:65078235-65078254 | None:intergenic | 50.0% | |
| GTGCTTCTTCTGGTACCAAG+AGG | - | chr8.1:65078012-65078031 | MS.gene056231:intron | 50.0% | |
| GTTGTGGTTGGCACATCTTG+AGG | + | chr8.1:65077713-65077732 | None:intergenic | 50.0% | |
| TGGCCGAGACCTATGAAACA+CGG | - | chr8.1:65078223-65078242 | MS.gene056231:intron | 50.0% | |
| ! | CATAGGTGTCGTGTCGGTAT+CGG | - | chr8.1:65078320-65078339 | MS.gene056231:CDS | 50.0% |
| !! | AGTATGATGGTGGCTGAAGG+TGG | - | chr8.1:65077975-65077994 | MS.gene056231:intron | 50.0% |
| !! | AGTGATGGTGGTGCTTCTTC+TGG | - | chr8.1:65078002-65078021 | MS.gene056231:intron | 50.0% |
| AGAAAAATGCCCCGGAGGCA+TGG | - | chr8.1:65078582-65078601 | MS.gene056231:CDS | 55.0% | |
| ATGGTCGTCACTCGTCAGAG+AGG | - | chr8.1:65078601-65078620 | MS.gene056231:CDS | 55.0% | |
| GAAGGTGGTGACAGTGATGG+TGG | - | chr8.1:65077990-65078009 | MS.gene056231:intron | 55.0% | |
| GCTGAAGGTGGTGACAGTGA+TGG | - | chr8.1:65077987-65078006 | MS.gene056231:intron | 55.0% | |
| GGGTGAGTAGTGGTTAGGAG+TGG | + | chr8.1:65077630-65077649 | None:intergenic | 55.0% | |
| GTTCGTGTTCGTGTCGTGTC+TGG | + | chr8.1:65078252-65078271 | None:intergenic | 55.0% | |
| ! | CGTGAAGAGCACGTGGATAC+CGG | - | chr8.1:65077932-65077951 | MS.gene056231:intron | 55.0% |
| ! | GTACTCACGTGAAGAGCACG+TGG | - | chr8.1:65077925-65077944 | MS.gene056231:intron | 55.0% |
| !! | CGGAGTATGATGGTGGCTGA+AGG | - | chr8.1:65077972-65077991 | MS.gene056231:intron | 55.0% |
| !! | TCTCAGAGGTGTCCTGGTGT+CGG | + | chr8.1:65078366-65078385 | None:intergenic | 55.0% |
| !! | TGTCGTGTCGGTATCGGTGT+TGG | - | chr8.1:65078326-65078345 | MS.gene056231:CDS | 55.0% |
| ACGAGTGACGACCATGCCTC+CGG | + | chr8.1:65078596-65078615 | None:intergenic | 60.0% | |
| ATCGACGTGTGTCCGACACC+AGG | - | chr8.1:65078351-65078370 | MS.gene056231:CDS | 60.0% | |
| CGAGTGACGACCATGCCTCC+GGG | + | chr8.1:65078595-65078614 | None:intergenic | 65.0% | |
| GAGGCGGGACCGGAGTATGA+TGG | - | chr8.1:65077962-65077981 | MS.gene056231:intron | 65.0% | |
| GAGTGACGACCATGCCTCCG+GGG | + | chr8.1:65078594-65078613 | None:intergenic | 65.0% | |
| GCGGGACCGGAGTATGATGG+TGG | - | chr8.1:65077965-65077984 | MS.gene056231:intron | 65.0% | |
| !! | CGTGGATACCGGCGTCGATG+AGG | - | chr8.1:65077943-65077962 | MS.gene056231:intron | 65.0% |
| !! | GATACCGGCGTCGATGAGGC+GGG | - | chr8.1:65077947-65077966 | MS.gene056231:intron | 65.0% |
| !! | GGATACCGGCGTCGATGAGG+CGG | - | chr8.1:65077946-65077965 | MS.gene056231:intron | 65.0% |
| GCAGGCGCGCGAACATAGCG+AGG | + | chr8.1:65078714-65078733 | None:intergenic | 70.0% | |
| CGGTCCCGCCTCATCGACGC+CGG | + | chr8.1:65077954-65077973 | None:intergenic | 75.0% | |
| !! | CGGCGTCGATGAGGCGGGAC+CGG | - | chr8.1:65077952-65077971 | MS.gene056231:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 65077477 | 65078986 | 65077477 | ID=MS.gene056231 |
| chr8.1 | mRNA | 65077477 | 65078986 | 65077477 | ID=MS.gene056231.t1;Parent=MS.gene056231 |
| chr8.1 | exon | 65078308 | 65078986 | 65078308 | ID=MS.gene056231.t1.exon1;Parent=MS.gene056231.t1 |
| chr8.1 | CDS | 65078308 | 65078986 | 65078308 | ID=cds.MS.gene056231.t1;Parent=MS.gene056231.t1 |
| chr8.1 | exon | 65077477 | 65077775 | 65077477 | ID=MS.gene056231.t1.exon2;Parent=MS.gene056231.t1 |
| chr8.1 | CDS | 65077477 | 65077775 | 65077477 | ID=cds.MS.gene056231.t1;Parent=MS.gene056231.t1 |
| Gene Sequence |
| Protein sequence |
