Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056342.t1 | XP_013455733.1 | 55.4 | 251 | 91 | 5 | 1 | 248 | 1 | 233 | 8.40E-61 | 243.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056342.t1 | Q4PSU4 | 35.5 | 197 | 111 | 5 | 1 | 187 | 55 | 245 | 1.1e-16 | 88.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056342.t1 | A0A072UJ33 | 55.4 | 251 | 91 | 5 | 1 | 248 | 1 | 233 | 6.0e-61 | 243.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene056342.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056342.t1 | MTR_4g051538 | 55.378 | 251 | 91 | 5 | 1 | 248 | 1 | 233 | 1.29e-82 | 247 |
| MS.gene056342.t1 | MTR_3g104630 | 56.081 | 148 | 58 | 5 | 94 | 238 | 3 | 146 | 8.06e-42 | 140 |
| MS.gene056342.t1 | MTR_1g012570 | 37.931 | 174 | 86 | 8 | 1 | 156 | 1 | 170 | 2.42e-22 | 92.4 |
| MS.gene056342.t1 | MTR_1g108510 | 33.735 | 166 | 97 | 3 | 1 | 156 | 1 | 163 | 3.74e-22 | 91.7 |
| MS.gene056342.t1 | MTR_5g053390 | 31.754 | 211 | 118 | 6 | 1 | 201 | 1 | 195 | 3.91e-22 | 91.7 |
| MS.gene056342.t1 | MTR_3g052920 | 36.527 | 167 | 89 | 5 | 1 | 150 | 1 | 167 | 4.17e-22 | 91.7 |
| MS.gene056342.t1 | MTR_1g077360 | 30.808 | 198 | 111 | 5 | 1 | 187 | 1 | 183 | 4.61e-22 | 91.7 |
| MS.gene056342.t1 | MTR_2g030740 | 37.126 | 167 | 88 | 4 | 1 | 150 | 1 | 167 | 5.86e-22 | 91.3 |
| MS.gene056342.t1 | MTR_1g105910 | 36.646 | 161 | 85 | 4 | 1 | 144 | 1 | 161 | 1.27e-21 | 90.5 |
| MS.gene056342.t1 | MTR_8g043650 | 36.424 | 151 | 81 | 3 | 1 | 136 | 1 | 151 | 2.63e-21 | 89.4 |
| MS.gene056342.t1 | MTR_3g030770 | 33.133 | 166 | 98 | 3 | 1 | 156 | 1 | 163 | 5.12e-21 | 88.6 |
| MS.gene056342.t1 | MTR_1g106070 | 36.646 | 161 | 85 | 5 | 1 | 144 | 1 | 161 | 7.54e-21 | 87.0 |
| MS.gene056342.t1 | MTR_3g080940 | 35.542 | 166 | 92 | 4 | 1 | 155 | 1 | 162 | 1.22e-20 | 87.0 |
| MS.gene056342.t1 | MTR_1g108580 | 34.940 | 166 | 81 | 4 | 1 | 144 | 1 | 161 | 7.68e-20 | 85.5 |
| MS.gene056342.t1 | MTR_2g085280 | 31.250 | 160 | 99 | 3 | 1 | 151 | 1 | 158 | 9.65e-20 | 85.5 |
| MS.gene056342.t1 | MTR_2g085250 | 31.250 | 160 | 99 | 3 | 1 | 151 | 1 | 158 | 1.11e-19 | 85.1 |
| MS.gene056342.t1 | MTR_1g075600 | 29.545 | 176 | 108 | 4 | 1 | 163 | 1 | 173 | 2.22e-19 | 84.3 |
| MS.gene056342.t1 | MTR_1g105920 | 35.762 | 151 | 82 | 3 | 1 | 136 | 1 | 151 | 2.36e-19 | 84.3 |
| MS.gene056342.t1 | MTR_8g086290 | 31.579 | 171 | 84 | 4 | 4 | 156 | 7 | 162 | 4.64e-19 | 82.0 |
| MS.gene056342.t1 | MTR_3g052870 | 52.778 | 72 | 34 | 0 | 1 | 72 | 1 | 72 | 5.71e-19 | 82.8 |
| MS.gene056342.t1 | MTR_5g045560 | 38.261 | 115 | 65 | 2 | 1 | 112 | 1 | 112 | 1.23e-18 | 82.4 |
| MS.gene056342.t1 | MTR_2g093190 | 32.919 | 161 | 91 | 4 | 1 | 144 | 1 | 161 | 1.98e-18 | 81.6 |
| MS.gene056342.t1 | MTR_5g055100 | 27.966 | 236 | 132 | 8 | 1 | 202 | 1 | 232 | 3.95e-18 | 80.9 |
| MS.gene056342.t1 | MTR_2g105290 | 30.818 | 159 | 101 | 3 | 4 | 156 | 7 | 162 | 2.13e-17 | 77.8 |
| MS.gene056342.t1 | MTR_0121s0100 | 44.156 | 77 | 43 | 0 | 1 | 77 | 1 | 77 | 8.66e-17 | 74.7 |
| MS.gene056342.t1 | MTR_3g030780 | 39.252 | 107 | 62 | 2 | 1 | 104 | 1 | 107 | 5.17e-16 | 72.8 |
| MS.gene056342.t1 | MTR_4g094638 | 50.725 | 69 | 34 | 0 | 9 | 77 | 2 | 70 | 6.52e-16 | 73.6 |
| MS.gene056342.t1 | MTR_1g047550 | 37.391 | 115 | 60 | 2 | 9 | 115 | 2 | 112 | 4.52e-15 | 71.2 |
| MS.gene056342.t1 | MTR_8g079502 | 37.500 | 112 | 66 | 2 | 9 | 116 | 2 | 113 | 8.94e-15 | 70.9 |
| MS.gene056342.t1 | MTR_1g105905 | 29.730 | 185 | 111 | 6 | 18 | 185 | 1 | 183 | 1.23e-14 | 71.2 |
| MS.gene056342.t1 | MTR_0121s0080 | 30.723 | 166 | 98 | 4 | 1 | 149 | 1 | 166 | 1.62e-14 | 71.2 |
| MS.gene056342.t1 | MTR_4g094632 | 33.333 | 144 | 84 | 4 | 9 | 151 | 2 | 134 | 3.03e-14 | 68.6 |
| MS.gene056342.t1 | MTR_8g046350 | 41.667 | 72 | 42 | 0 | 9 | 80 | 2 | 73 | 3.20e-14 | 68.9 |
| MS.gene056342.t1 | MTR_3g067875 | 50.909 | 55 | 27 | 0 | 18 | 72 | 1 | 55 | 6.59e-14 | 65.5 |
| MS.gene056342.t1 | MTR_8g022970 | 32.515 | 163 | 94 | 4 | 8 | 159 | 17 | 174 | 1.41e-13 | 67.4 |
| MS.gene056342.t1 | MTR_8g051580 | 32.143 | 140 | 71 | 4 | 9 | 126 | 2 | 139 | 2.77e-13 | 66.6 |
| MS.gene056342.t1 | MTR_1g054265 | 31.405 | 121 | 61 | 2 | 9 | 116 | 2 | 113 | 1.64e-12 | 64.3 |
| MS.gene056342.t1 | MTR_4g131030 | 32.558 | 129 | 66 | 2 | 9 | 116 | 2 | 130 | 1.70e-12 | 65.1 |
| MS.gene056342.t1 | MTR_1g063160 | 34.821 | 112 | 69 | 2 | 9 | 116 | 2 | 113 | 7.06e-12 | 62.8 |
| MS.gene056342.t1 | MTR_1g029670 | 50.000 | 64 | 32 | 0 | 9 | 72 | 2 | 65 | 7.63e-12 | 62.8 |
| MS.gene056342.t1 | MTR_4g102530 | 49.254 | 67 | 31 | 1 | 10 | 76 | 3 | 66 | 3.11e-11 | 61.2 |
| MS.gene056342.t1 | MTR_7g028448 | 29.921 | 127 | 83 | 4 | 26 | 148 | 29 | 153 | 3.90e-11 | 60.5 |
| MS.gene056342.t1 | MTR_4g036915 | 29.921 | 127 | 83 | 4 | 26 | 148 | 29 | 153 | 3.90e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056342.t1 | AT4G36590 | 35.329 | 167 | 91 | 3 | 5 | 156 | 3 | 167 | 7.99e-23 | 94.0 |
| MS.gene056342.t1 | AT1G29962 | 35.227 | 176 | 96 | 4 | 1 | 161 | 1 | 173 | 4.69e-22 | 90.1 |
| MS.gene056342.t1 | AT2G24840 | 35.938 | 192 | 105 | 6 | 7 | 187 | 61 | 245 | 6.28e-22 | 91.7 |
| MS.gene056342.t1 | AT1G28460 | 35.260 | 173 | 97 | 4 | 1 | 161 | 1 | 170 | 2.22e-20 | 85.9 |
| MS.gene056342.t1 | AT1G01530 | 38.136 | 118 | 67 | 2 | 5 | 117 | 3 | 119 | 1.99e-18 | 82.0 |
| MS.gene056342.t1 | AT5G60440 | 31.925 | 213 | 115 | 6 | 5 | 205 | 3 | 197 | 3.32e-18 | 82.4 |
| MS.gene056342.t1 | AT2G34440 | 32.203 | 177 | 97 | 7 | 9 | 174 | 2 | 166 | 1.79e-17 | 77.8 |
| MS.gene056342.t1 | AT1G28450 | 32.759 | 174 | 99 | 4 | 1 | 159 | 1 | 171 | 2.29e-17 | 77.8 |
| MS.gene056342.t1 | AT3G04100 | 41.573 | 89 | 49 | 1 | 2 | 90 | 7 | 92 | 9.78e-16 | 73.9 |
| MS.gene056342.t1 | AT1G65360 | 33.962 | 106 | 66 | 1 | 5 | 106 | 3 | 108 | 1.39e-15 | 73.9 |
| MS.gene056342.t1 | AT3G66656 | 47.692 | 65 | 34 | 0 | 9 | 73 | 2 | 66 | 6.06e-14 | 68.6 |
| MS.gene056342.t1 | AT1G47760 | 39.759 | 83 | 47 | 1 | 9 | 91 | 2 | 81 | 6.73e-13 | 65.9 |
| MS.gene056342.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 6.09e-11 | 60.1 |
| MS.gene056342.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 6.09e-11 | 60.1 |
| MS.gene056342.t1 | AT5G10140 | 48.214 | 56 | 29 | 0 | 9 | 64 | 2 | 57 | 8.60e-11 | 59.3 |
| MS.gene056342.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 8.91e-11 | 60.5 |
| MS.gene056342.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 8.91e-11 | 60.5 |
| MS.gene056342.t1 | AT1G72350 | 47.541 | 61 | 32 | 0 | 9 | 69 | 43 | 103 | 9.23e-11 | 60.5 |
Find 47 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCATATCATTCATCTTT+AGG | 0.191781 | 4.1:-34800218 | None:intergenic |
| ACCAATCCTCCTTATGTCTT+TGG | 0.213662 | 4.1:+34799801 | MS.gene056342:CDS |
| CCAATCCTCCTTATGTCTTT+GGG | 0.233763 | 4.1:+34799802 | MS.gene056342:CDS |
| AACAACAACGGTTATGAAAT+TGG | 0.254239 | 4.1:+34799828 | MS.gene056342:CDS |
| ACGGGAAAGTTTGAAGGCTT+TGG | 0.328236 | 4.1:+34799474 | MS.gene056342:CDS |
| GAAGGTTCTCCATAACAATA+TGG | 0.353627 | 4.1:-34799316 | None:intergenic |
| CTTTGGAAAGTTATGGCTAT+TGG | 0.358280 | 4.1:+34799491 | MS.gene056342:CDS |
| AAAATTGGACACATCTTTAG+TGG | 0.370003 | 4.1:+34799561 | MS.gene056342:CDS |
| GATGTTATTGCTTCTCTTGA+AGG | 0.392101 | 4.1:+34800122 | MS.gene056342:CDS |
| TCTGAATTATCAACACTTTG+TGG | 0.392582 | 4.1:+34799253 | MS.gene056342:CDS |
| TTGAAGGCTTTGGAAAGTTA+TGG | 0.393387 | 4.1:+34799484 | MS.gene056342:CDS |
| CTTGCTATGGATTGAGAAGA+AGG | 0.408194 | 4.1:-34799334 | None:intergenic |
| GCATGTTGGGGAAGCACAAC+GGG | 0.415970 | 4.1:+34799456 | MS.gene056342:CDS |
| GCAGGAAAACCATATTGTTA+TGG | 0.420932 | 4.1:+34799307 | MS.gene056342:CDS |
| TCACTTGCACGGTCAAGGTT+TGG | 0.423194 | 4.1:-34800164 | None:intergenic |
| CTGAATTATCAACACTTTGT+GGG | 0.424852 | 4.1:+34799254 | MS.gene056342:CDS |
| CTACCTCTTGATGTCCTCTT+CGG | 0.429458 | 4.1:-34799142 | None:intergenic |
| CTTCAAAATTGTTCTTGCTA+TGG | 0.431100 | 4.1:-34799347 | None:intergenic |
| TTTAATTCTTCTTCTACTGA+AGG | 0.442448 | 4.1:-34799379 | None:intergenic |
| CATTTCCACTTTCACTTGCA+CGG | 0.448306 | 4.1:-34800175 | None:intergenic |
| ATTCTTATTATTTCTCCAGC+AGG | 0.453510 | 4.1:+34799289 | MS.gene056342:CDS |
| CACTTTCACTTGCACGGTCA+AGG | 0.460125 | 4.1:-34800169 | None:intergenic |
| AATTTCATAACCGTTGTTGT+TGG | 0.462889 | 4.1:-34799826 | None:intergenic |
| CTTGACCGTGCAAGTGAAAG+TGG | 0.475104 | 4.1:+34800170 | MS.gene056342:CDS |
| TTGTTGGCCCCAAAGACATA+AGG | 0.478695 | 4.1:-34799810 | None:intergenic |
| TTAATTCTTCTTCTACTGAA+GGG | 0.481788 | 4.1:-34799378 | None:intergenic |
| CGTGCAAGTGAAAGTGGAAA+TGG | 0.489776 | 4.1:+34800176 | MS.gene056342:CDS |
| AGACATAAGGAGGATTGGTC+TGG | 0.500564 | 4.1:-34799797 | None:intergenic |
| ATTTATGATCCAAAAGGAAA+AGG | 0.506756 | 4.1:+34800095 | MS.gene056342:CDS |
| CCCAAAGACATAAGGAGGAT+TGG | 0.507911 | 4.1:-34799802 | None:intergenic |
| TCCCAGATTTATGATCCAAA+AGG | 0.515467 | 4.1:+34800089 | MS.gene056342:CDS |
| AGCACAACGGGAAAGTTTGA+AGG | 0.525932 | 4.1:+34799468 | MS.gene056342:CDS |
| ATAAGTAGTGTCTTAAGCAA+TGG | 0.548667 | 4.1:+34799601 | MS.gene056342:CDS |
| TGAATTATCAACACTTTGTG+GGG | 0.569118 | 4.1:+34799255 | MS.gene056342:CDS |
| GTCTTTGGGGCCAACAACAA+CGG | 0.574083 | 4.1:+34799816 | MS.gene056342:CDS |
| TCATGCATAGACGAACTGAA+TGG | 0.587017 | 4.1:+34799771 | MS.gene056342:CDS |
| CAATCCTCCTTATGTCTTTG+GGG | 0.592798 | 4.1:+34799803 | MS.gene056342:CDS |
| GGAGGAGAGATTAATCCTCA+TGG | 0.604055 | 4.1:+34799622 | MS.gene056342:CDS |
| AGTAGTGTCTTAAGCAATGG+AGG | 0.611596 | 4.1:+34799604 | MS.gene056342:CDS |
| TTGGCCCCAAAGACATAAGG+AGG | 0.611952 | 4.1:-34799807 | None:intergenic |
| ACAAAGTGTTGATAATTCAG+AGG | 0.616841 | 4.1:-34799251 | None:intergenic |
| TGATCCAAAAGGAAAAGGCA+AGG | 0.624272 | 4.1:+34800100 | MS.gene056342:CDS |
| TTTGGATGAAAAGCATGTTG+GGG | 0.634500 | 4.1:+34799444 | MS.gene056342:CDS |
| AGCATGTTGGGGAAGCACAA+CGG | 0.636492 | 4.1:+34799455 | MS.gene056342:CDS |
| TGGTTAAGATGGCTCCGAAG+AGG | 0.660173 | 4.1:+34799128 | None:intergenic |
| GCTCCGAAGAGGACATCAAG+AGG | 0.673948 | 4.1:+34799139 | MS.gene056342:CDS |
| GAAGGTAGAAATAAAACACA+AGG | 0.705496 | 4.1:+34800140 | MS.gene056342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTTATTTATGAAAAAG+TGG | + | chr4.1:34799725-34799744 | MS.gene056342:intron | 15.0% |
| !! | GAAATTATACAATATGTGTT+AGG | - | chr4.1:34800049-34800068 | None:intergenic | 20.0% |
| !! | TTATGACCAGTTAAAAAAAT+TGG | + | chr4.1:34799546-34799565 | MS.gene056342:CDS | 20.0% |
| !!! | AATGTCTTCATATCTTTTTT+TGG | - | chr4.1:34800001-34800020 | None:intergenic | 20.0% |
| !!! | ATGTCTTCATATCTTTTTTT+GGG | - | chr4.1:34800000-34800019 | None:intergenic | 20.0% |
| !!! | TACTCTTGTTTATATGAATT+TGG | - | chr4.1:34799874-34799893 | None:intergenic | 20.0% |
| ! | AGTATAGATATTTGATGTGT+TGG | - | chr4.1:34799915-34799934 | None:intergenic | 25.0% |
| ! | ATTTATGATCCAAAAGGAAA+AGG | + | chr4.1:34800095-34800114 | MS.gene056342:CDS | 25.0% |
| ! | GCATTAAAAATGGTTAAAGT+TGG | - | chr4.1:34799939-34799958 | None:intergenic | 25.0% |
| ! | TCTCATAAGTGCATTAAAAA+TGG | - | chr4.1:34799949-34799968 | None:intergenic | 25.0% |
| ! | TTAATTCTTCTTCTACTGAA+GGG | - | chr4.1:34799381-34799400 | None:intergenic | 25.0% |
| ! | TTTAATTCTTCTTCTACTGA+AGG | - | chr4.1:34799382-34799401 | None:intergenic | 25.0% |
| !!! | ATGTGTCCAATTTTTTTAAC+TGG | - | chr4.1:34799555-34799574 | None:intergenic | 25.0% |
| AAAATTGGACACATCTTTAG+TGG | + | chr4.1:34799561-34799580 | MS.gene056342:CDS | 30.0% | |
| AACAACAACGGTTATGAAAT+TGG | + | chr4.1:34799828-34799847 | MS.gene056342:CDS | 30.0% | |
| AATTTCATAACCGTTGTTGT+TGG | - | chr4.1:34799829-34799848 | None:intergenic | 30.0% | |
| ATAAGTAGTGTCTTAAGCAA+TGG | + | chr4.1:34799601-34799620 | MS.gene056342:CDS | 30.0% | |
| CTGAATTATCAACACTTTGT+GGG | + | chr4.1:34799254-34799273 | MS.gene056342:CDS | 30.0% | |
| CTTCAAAATTGTTCTTGCTA+TGG | - | chr4.1:34799350-34799369 | None:intergenic | 30.0% | |
| GAAGGTAGAAATAAAACACA+AGG | + | chr4.1:34800140-34800159 | MS.gene056342:CDS | 30.0% | |
| TCTGAATTATCAACACTTTG+TGG | + | chr4.1:34799253-34799272 | MS.gene056342:CDS | 30.0% | |
| TGAATTATCAACACTTTGTG+GGG | + | chr4.1:34799255-34799274 | MS.gene056342:CDS | 30.0% | |
| TGTACATCTTCTAATCAACT+TGG | + | chr4.1:34799649-34799668 | MS.gene056342:intron | 30.0% | |
| ! | ATTCTTATTATTTCTCCAGC+AGG | + | chr4.1:34799289-34799308 | MS.gene056342:CDS | 30.0% |
| ! | CACAAAAAATGATGAGCTTT+TGG | + | chr4.1:34799426-34799445 | MS.gene056342:CDS | 30.0% |
| ! | GCATTTTCAAAAAGAAAGTC+TGG | + | chr4.1:34799214-34799233 | MS.gene056342:CDS | 30.0% |
| ! | TCCTTTTGGATCATAAATCT+GGG | - | chr4.1:34800093-34800112 | None:intergenic | 30.0% |
| ! | TTCCTTTTGGATCATAAATC+TGG | - | chr4.1:34800094-34800113 | None:intergenic | 30.0% |
| !! | ACAAAGTGTTGATAATTCAG+AGG | - | chr4.1:34799254-34799273 | None:intergenic | 30.0% |
| !! | TTTTGGATGAAAAGCATGTT+GGG | + | chr4.1:34799443-34799462 | MS.gene056342:CDS | 30.0% |
| GAAGGTTCTCCATAACAATA+TGG | - | chr4.1:34799319-34799338 | None:intergenic | 35.0% | |
| GATGTTATTGCTTCTCTTGA+AGG | + | chr4.1:34800122-34800141 | MS.gene056342:CDS | 35.0% | |
| GCAGGAAAACCATATTGTTA+TGG | + | chr4.1:34799307-34799326 | MS.gene056342:CDS | 35.0% | |
| TATGTGTTAGGTTTATCGCA+TGG | - | chr4.1:34800037-34800056 | None:intergenic | 35.0% | |
| TCCCAGATTTATGATCCAAA+AGG | + | chr4.1:34800089-34800108 | MS.gene056342:CDS | 35.0% | |
| TTTCTTGTCATTGAAGCTCA+TGG | + | chr4.1:34800065-34800084 | MS.gene056342:intron | 35.0% | |
| ! | CTTTGGAAAGTTATGGCTAT+TGG | + | chr4.1:34799491-34799510 | MS.gene056342:CDS | 35.0% |
| ! | TAACAATATGGTTTTCCTGC+TGG | - | chr4.1:34799307-34799326 | None:intergenic | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+GGG | + | chr4.1:34799444-34799463 | MS.gene056342:CDS | 35.0% |
| !! | CTTTTGGATGAAAAGCATGT+TGG | + | chr4.1:34799442-34799461 | MS.gene056342:CDS | 35.0% |
| !! | TTGAAGGCTTTGGAAAGTTA+TGG | + | chr4.1:34799484-34799503 | MS.gene056342:CDS | 35.0% |
| ACCAATCCTCCTTATGTCTT+TGG | + | chr4.1:34799801-34799820 | MS.gene056342:CDS | 40.0% | |
| AGTAGTGTCTTAAGCAATGG+AGG | + | chr4.1:34799604-34799623 | MS.gene056342:CDS | 40.0% | |
| CAATCCTCCTTATGTCTTTG+GGG | + | chr4.1:34799803-34799822 | MS.gene056342:CDS | 40.0% | |
| CATTTCCACTTTCACTTGCA+CGG | - | chr4.1:34800178-34800197 | None:intergenic | 40.0% | |
| CCAATCCTCCTTATGTCTTT+GGG | + | chr4.1:34799802-34799821 | MS.gene056342:CDS | 40.0% | |
| TCATGCATAGACGAACTGAA+TGG | + | chr4.1:34799771-34799790 | MS.gene056342:CDS | 40.0% | |
| TGATCCAAAAGGAAAAGGCA+AGG | + | chr4.1:34800100-34800119 | MS.gene056342:CDS | 40.0% | |
| ! | ACATCCTTGCCTTTTCCTTT+TGG | - | chr4.1:34800107-34800126 | None:intergenic | 40.0% |
| ! | CTTGCTATGGATTGAGAAGA+AGG | - | chr4.1:34799337-34799356 | None:intergenic | 40.0% |
| ACGGGAAAGTTTGAAGGCTT+TGG | + | chr4.1:34799474-34799493 | MS.gene056342:CDS | 45.0% | |
| AGCACAACGGGAAAGTTTGA+AGG | + | chr4.1:34799468-34799487 | MS.gene056342:CDS | 45.0% | |
| CCCAAAGACATAAGGAGGAT+TGG | - | chr4.1:34799805-34799824 | None:intergenic | 45.0% | |
| CGTGCAAGTGAAAGTGGAAA+TGG | + | chr4.1:34800176-34800195 | MS.gene056342:CDS | 45.0% | |
| CTACCTCTTGATGTCCTCTT+CGG | - | chr4.1:34799145-34799164 | None:intergenic | 45.0% | |
| GAAGATGTACACGTACCATG+AGG | - | chr4.1:34799640-34799659 | None:intergenic | 45.0% | |
| GGAGGAGAGATTAATCCTCA+TGG | + | chr4.1:34799622-34799641 | MS.gene056342:CDS | 45.0% | |
| TTGTTGGCCCCAAAGACATA+AGG | - | chr4.1:34799813-34799832 | None:intergenic | 45.0% | |
| !! | AGACATAAGGAGGATTGGTC+TGG | - | chr4.1:34799800-34799819 | None:intergenic | 45.0% |
| CACTTTCACTTGCACGGTCA+AGG | - | chr4.1:34800172-34800191 | None:intergenic | 50.0% | |
| CTTGACCGTGCAAGTGAAAG+TGG | + | chr4.1:34800170-34800189 | MS.gene056342:CDS | 50.0% | |
| TCACTTGCACGGTCAAGGTT+TGG | - | chr4.1:34800167-34800186 | None:intergenic | 50.0% | |
| TTGGCCCCAAAGACATAAGG+AGG | - | chr4.1:34799810-34799829 | None:intergenic | 50.0% | |
| ! | AGCATGTTGGGGAAGCACAA+CGG | + | chr4.1:34799455-34799474 | MS.gene056342:CDS | 50.0% |
| !! | GTCTTTGGGGCCAACAACAA+CGG | + | chr4.1:34799816-34799835 | MS.gene056342:CDS | 50.0% |
| GCTCCGAAGAGGACATCAAG+AGG | + | chr4.1:34799139-34799158 | MS.gene056342:CDS | 55.0% | |
| ! | GCATGTTGGGGAAGCACAAC+GGG | + | chr4.1:34799456-34799475 | MS.gene056342:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 34799136 | 34800232 | 34799136 | ID=MS.gene056342 |
| chr4.1 | mRNA | 34799136 | 34800232 | 34799136 | ID=MS.gene056342.t1;Parent=MS.gene056342 |
| chr4.1 | exon | 34799136 | 34799643 | 34799136 | ID=MS.gene056342.t1.exon1;Parent=MS.gene056342.t1 |
| chr4.1 | CDS | 34799136 | 34799643 | 34799136 | ID=cds.MS.gene056342.t1;Parent=MS.gene056342.t1 |
| chr4.1 | exon | 34799766 | 34799855 | 34799766 | ID=MS.gene056342.t1.exon2;Parent=MS.gene056342.t1 |
| chr4.1 | CDS | 34799766 | 34799855 | 34799766 | ID=cds.MS.gene056342.t1;Parent=MS.gene056342.t1 |
| chr4.1 | exon | 34800081 | 34800232 | 34800081 | ID=MS.gene056342.t1.exon3;Parent=MS.gene056342.t1 |
| chr4.1 | CDS | 34800081 | 34800232 | 34800081 | ID=cds.MS.gene056342.t1;Parent=MS.gene056342.t1 |
| Gene Sequence |
| Protein sequence |
