AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057016

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057016.t1 MTR_2g099990 95.096 469 17 4 20 483 1 468 0.0 908
MS.gene057016.t1 MTR_2g099990 94.750 400 16 3 88 483 1 399 0.0 776
MS.gene057016.t1 MTR_8g017210 58.444 527 132 19 1 465 1 502 2.79e-176 505
MS.gene057016.t1 MTR_1g016010 48.889 495 182 15 12 480 3 452 4.79e-133 392
MS.gene057016.t1 MTR_1g094115 88.415 164 19 0 61 224 44 207 2.80e-110 337
MS.gene057016.t1 MTR_4g059870 42.647 476 195 14 61 475 35 493 1.90e-109 333
MS.gene057016.t1 MTR_1g112270 88.125 160 19 0 67 226 47 206 1.30e-107 331
MS.gene057016.t1 MTR_1g112270 84.337 166 26 0 61 226 52 217 2.71e-104 323
MS.gene057016.t1 MTR_2g093960 81.928 166 29 1 63 227 31 196 3.23e-102 312
MS.gene057016.t1 MTR_2g090745 87.582 153 19 0 74 226 17 169 4.20e-101 310
MS.gene057016.t1 MTR_1g094115 78.049 164 19 1 61 224 44 190 3.53e-93 292
MS.gene057016.t1 MTR_2g017720 60.606 165 51 2 33 188 273 432 1.19e-59 202
MS.gene057016.t1 MTR_3g102000 70.707 99 22 2 91 185 36 131 2.43e-41 147
MS.gene057016.t1 MTR_5g030560 76.000 50 12 0 69 118 11 60 1.35e-21 89.0
MS.gene057016.t1 MTR_1g093095 35.172 145 79 6 85 216 107 249 2.25e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057016.t1 AT1G55110 49.686 477 170 15 16 470 17 445 7.04e-129 382
MS.gene057016.t1 AT1G55110 49.686 477 170 15 16 470 17 445 7.04e-129 382
MS.gene057016.t1 AT1G55110 49.686 477 170 15 16 470 17 445 7.04e-129 382
MS.gene057016.t1 AT3G13810 76.233 223 40 3 17 229 12 231 1.02e-117 355
MS.gene057016.t1 AT3G13810 37.356 174 85 8 315 482 353 508 2.94e-18 87.8
MS.gene057016.t1 AT3G13810 76.233 223 40 3 17 229 17 236 1.10e-117 355
MS.gene057016.t1 AT3G13810 37.356 174 85 8 315 482 358 513 3.71e-18 87.4
MS.gene057016.t1 AT3G13810 76.233 223 40 3 17 229 17 236 1.10e-117 355
MS.gene057016.t1 AT3G13810 37.356 174 85 8 315 482 358 513 3.71e-18 87.4
MS.gene057016.t1 AT3G13810 76.364 220 39 3 20 229 1 217 4.16e-116 350
MS.gene057016.t1 AT3G13810 37.356 174 85 8 315 482 339 494 2.51e-18 88.2
MS.gene057016.t1 AT3G50700 83.333 174 29 0 63 236 33 206 2.34e-112 340
MS.gene057016.t1 AT5G66730 73.077 208 39 1 19 226 4 194 2.88e-112 341
MS.gene057016.t1 AT1G03840 88.415 164 19 0 63 226 40 203 5.54e-112 340
MS.gene057016.t1 AT5G44160 82.222 180 27 1 52 226 20 199 1.63e-109 333
MS.gene057016.t1 AT4G02670 51.093 366 127 11 29 388 17 336 1.21e-108 328
MS.gene057016.t1 AT4G02670 51.093 366 127 11 29 388 19 338 1.44e-108 328
MS.gene057016.t1 AT1G14580 67.757 214 64 1 13 226 7 215 1.44e-108 330
MS.gene057016.t1 AT1G14580 67.757 214 64 1 13 226 7 215 1.44e-108 330
MS.gene057016.t1 AT1G14580 67.757 214 64 1 13 226 21 229 2.67e-108 330
MS.gene057016.t1 AT2G02080 83.030 165 28 0 62 226 52 216 3.84e-108 331
MS.gene057016.t1 AT2G02080 83.030 165 28 0 62 226 52 216 3.84e-108 331
MS.gene057016.t1 AT2G02080 83.030 165 28 0 62 226 52 216 3.84e-108 331
MS.gene057016.t1 AT2G02080 83.030 165 28 0 62 226 52 216 3.84e-108 331
MS.gene057016.t1 AT1G03840 87.195 164 19 1 63 226 40 201 4.77e-108 330
MS.gene057016.t1 AT3G45260 82.486 177 28 2 63 236 38 214 9.79e-108 327
MS.gene057016.t1 AT3G45260 82.486 177 28 2 63 236 38 214 9.79e-108 327
MS.gene057016.t1 AT5G60470 76.316 190 42 3 50 237 27 215 2.43e-106 324
MS.gene057016.t1 AT5G60470 76.316 190 42 3 50 237 31 219 2.69e-106 324
MS.gene057016.t1 AT3G13810 69.869 229 50 3 17 229 12 237 3.33e-106 326
MS.gene057016.t1 AT3G13810 37.356 174 85 8 315 482 359 514 4.26e-18 87.4
MS.gene057016.t1 AT2G02070 84.663 163 25 0 64 226 52 214 6.24e-105 325
MS.gene057016.t1 AT2G02070 84.663 163 25 0 64 226 52 214 6.24e-105 325
MS.gene057016.t1 AT3G13810 69.912 226 49 3 20 229 1 223 1.60e-104 321
MS.gene057016.t1 AT3G13810 37.356 174 85 8 315 482 345 500 4.02e-18 87.4
MS.gene057016.t1 AT5G03150 84.242 165 25 1 63 226 52 216 2.27e-103 318
MS.gene057016.t1 AT5G44160 86.928 153 20 0 74 226 8 160 8.43e-101 309
MS.gene057016.t1 AT5G60470 79.394 165 32 2 75 237 46 210 5.04e-97 300
MS.gene057016.t1 AT2G02080 83.453 139 23 0 88 226 1 139 2.72e-91 285
MS.gene057016.t1 AT2G02080 83.453 139 23 0 88 226 1 139 2.72e-91 285
MS.gene057016.t1 AT1G68130 64.103 156 54 2 64 217 41 196 1.20e-72 236
MS.gene057016.t1 AT2G01940 63.924 158 55 2 64 219 44 201 5.06e-72 235
MS.gene057016.t1 AT1G25250 59.538 173 59 3 64 233 33 197 1.23e-71 232
MS.gene057016.t1 AT2G01940 62.893 159 56 3 64 219 44 202 1.74e-68 226
MS.gene057016.t1 AT1G25250 60.736 163 53 3 74 233 20 174 2.93e-68 223
MS.gene057016.t1 AT1G68130 64.545 110 37 2 110 217 1 110 6.51e-46 163
MS.gene057016.t1 AT2G01940 63.393 112 39 2 110 219 1 112 2.06e-45 162
MS.gene057016.t1 AT1G25250 58.268 127 42 3 110 233 1 119 3.73e-45 160
MS.gene057016.t1 AT1G34370 30.841 214 125 6 59 254 3 211 8.83e-24 101
MS.gene057016.t1 AT1G34370 30.415 217 128 6 56 254 210 421 1.94e-23 103
MS.gene057016.t1 AT1G34370 30.415 217 128 6 56 254 210 421 1.94e-23 103
MS.gene057016.t1 AT5G22890 32.026 153 90 3 78 216 202 354 1.84e-21 96.3
MS.gene057016.t1 AT1G13290 34.161 161 91 7 76 224 85 242 4.15e-19 88.2
MS.gene057016.t1 AT3G20880 33.562 146 87 4 80 216 243 387 2.09e-18 87.8
MS.gene057016.t1 AT1G51220 32.192 146 89 4 80 216 165 309 6.24e-18 85.5
MS.gene057016.t1 AT3G57670 32.653 147 87 5 80 216 204 348 9.39e-18 85.5
MS.gene057016.t1 AT1G08290 36.765 136 73 6 92 216 179 312 7.19e-17 82.0
MS.gene057016.t1 AT1G34790 32.450 151 90 5 76 216 128 276 3.61e-16 79.7

Find 99 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTTCTTCTGGATTTCA+TGG 0.185525 2.1:-4672172 MS.gene057016:CDS
TTCTCTTGTGCCACAGGTTT+TGG 0.189840 2.1:+4673324 None:intergenic
AACAACTCTTTCTCTTCTTC+TGG 0.209031 2.1:-4672181 MS.gene057016:CDS
GGCATTTGTACTTCTTGTTC+TGG 0.285019 2.1:+4672529 None:intergenic
GAAGCTAGTGCTAATTCTTC+TGG 0.298581 2.1:-4674244 MS.gene057016:CDS
GGAAGTGTAGGACCATTTCT+AGG 0.313383 2.1:+4672421 None:intergenic
AGCCTTGGATATCTTGAGTT+TGG 0.314047 2.1:+4672593 None:intergenic
TTTGTTGCCATCAGTGTCTT+TGG 0.324056 2.1:+4673637 None:intergenic
GCACTTACAAGAGATTTCTT+AGG 0.351186 2.1:-4672013 MS.gene057016:CDS
AGAAAGAGTTGTTTATCATT+TGG 0.355557 2.1:+4672191 None:intergenic
ACCTCTCCTCAAACTATTCA+AGG 0.372455 2.1:-4672480 MS.gene057016:CDS
GTAGGACCATTTCTAGGGTT+AGG 0.377918 2.1:+4672427 None:intergenic
ATCAAAGTTTCAACATGTTA+AGG 0.397845 2.1:-4672552 MS.gene057016:CDS
ATCCAACCTTGAATAGTTTG+AGG 0.405976 2.1:+4672474 None:intergenic
TTGTGTAGGTTGTGGAATTA+CGG 0.407829 2.1:+4672645 None:intergenic
AGTGATATCCTCACCATTGC+TGG 0.409995 2.1:-4671971 MS.gene057016:CDS
TCTAATTTGACTTCTGCATC+TGG 0.412009 2.1:-4674268 MS.gene057016:CDS
TAGGACCATTTCTAGGGTTA+GGG 0.414611 2.1:+4672428 None:intergenic
TGGTGCACACAAGTTGGTTC+TGG 0.417382 2.1:+4673478 None:intergenic
TATCCTCACCATTGCTGGTA+TGG 0.421802 2.1:-4671966 MS.gene057016:CDS
CATGACCCATCAAGAGCCTT+GGG 0.426349 2.1:-4673457 MS.gene057016:CDS
GTTGAGTGGGACCCACCAAC+AGG 0.427753 2.1:-4672299 MS.gene057016:CDS
GTTCTTTGCTTCAACTTCCA+TGG 0.431659 2.1:+4673535 None:intergenic
TCTGTATTCTCTTGTGCCAC+AGG 0.435175 2.1:+4673318 None:intergenic
AAGAAAAGAAGAAACCTTCC+TGG 0.442018 2.1:-4674139 MS.gene057016:CDS
ATTTGAGTTTATCATGTTGT+TGG 0.445102 2.1:+4672249 None:intergenic
GTTTGAGGAGAGGTCAATGT+TGG 0.446017 2.1:+4672489 None:intergenic
CTTTCTTCAATGTCAAGCCT+TGG 0.446505 2.1:+4672578 None:intergenic
AAGCTATAACTTCAGCTTGT+GGG 0.447498 2.1:+4673665 None:intergenic
GAAAACCCTAACCCTAGAAA+TGG 0.454115 2.1:-4672433 MS.gene057016:CDS
AGTGCTTCTTGATACCAGTT+AGG 0.454887 2.1:+4673431 None:intergenic
GAAAATGAACCTGGATTGCC+AGG 0.461039 2.1:+4674121 None:intergenic
AAGAAGTACAAATGCCCTCT+TGG 0.463549 2.1:-4672522 MS.gene057016:CDS
CAGAGCCTTCTGTGATGCAT+TGG 0.469401 2.1:-4672686 MS.gene057016:CDS
TGCATTGTTTCCTCCGGCAC+CGG 0.471541 2.1:+4672033 None:intergenic
AGAAACCTTCCTGGCAATCC+AGG 0.472577 2.1:-4674130 MS.gene057016:intron
CCAAGGCTCTTGATGGGTCA+TGG 0.475409 2.1:+4673458 None:intergenic
TGTAAGTGCATTGTTTCCTC+CGG 0.475628 2.1:+4672027 None:intergenic
CCATGACCCATCAAGAGCCT+TGG 0.490603 2.1:-4673458 MS.gene057016:CDS
ACCGGCACCGTCATCATCAT+TGG 0.490777 2.1:+4672051 None:intergenic
AACAACATGATAAACTCAAA+TGG 0.493838 2.1:-4672247 MS.gene057016:CDS
AATCTTCAACTTCATAAAAG+AGG 0.500458 2.1:-4673568 MS.gene057016:CDS
ATCCTCACCATTGCTGGTAT+GGG 0.502220 2.1:-4671965 MS.gene057016:CDS
AGTTGATGCAAAATTCTCTC+AGG 0.503692 2.1:-4674209 MS.gene057016:CDS
GATGATGACGGTGCCGGTGC+CGG 0.516820 2.1:-4672046 MS.gene057016:CDS
GTTACAGAAAGCAGCTCAGA+TGG 0.517581 2.1:-4672347 MS.gene057016:CDS
ATGAACCTGGATTGCCAGGA+AGG 0.520133 2.1:+4674125 None:intergenic
ATAGTTATACCTTGAGAAGA+GGG 0.521705 2.1:+4673282 None:intergenic
ATATGTGAGATCTGTAACAA+AGG 0.526520 2.1:-4673607 MS.gene057016:CDS
ACAACAATCATTAGTTGTTG+AGG 0.530940 2.1:-4674299 MS.gene057016:CDS
AGTATGCAGTTCAATCAGAC+TGG 0.532991 2.1:-4673357 MS.gene057016:CDS
TTTGGAGATTGTTCATGTTG+TGG 0.533091 2.1:+4672611 None:intergenic
AAAGAACAAGCAATGAGATA+AGG 0.533182 2.1:-4673519 MS.gene057016:CDS
CTCCTCAAACTATTCAAGGT+TGG 0.534048 2.1:-4672476 MS.gene057016:CDS
TGAGGTGAAGCTGCAGATGC+TGG 0.537360 2.1:+4672388 None:intergenic
TGAGTTTATCATGTTGTTGG+TGG 0.541113 2.1:+4672252 None:intergenic
GCAGATGCTGGTTGGTAGGA+TGG 0.542786 2.1:+4672400 None:intergenic
TTGGTGGGTCCCACTCAACA+TGG 0.546559 2.1:+4672303 None:intergenic
CCAAACTAATTACCTTCCCA+TGG 0.548476 2.1:+4671890 None:intergenic
CAACATGGACTGAGATGAGC+TGG 0.548999 2.1:+4672318 None:intergenic
TATCATTTGGTCTTCACATG+AGG 0.559455 2.1:+4672204 None:intergenic
TATAGTTATACCTTGAGAAG+AGG 0.562344 2.1:+4673281 None:intergenic
GAACATAATATCAATCATGA+TGG 0.565329 2.1:-4672100 MS.gene057016:CDS
GAAAGCACGGTGAGAAGAAG+TGG 0.566601 2.1:-4673402 MS.gene057016:CDS
GAAGTGTAGGACCATTTCTA+GGG 0.573649 2.1:+4672422 None:intergenic
ACCTTGAATAGTTTGAGGAG+AGG 0.575888 2.1:+4672479 None:intergenic
TCATCTCAGTCCATGTTGAG+TGG 0.578988 2.1:-4672313 MS.gene057016:CDS
CTCAGCCAATGCATCACAGA+AGG 0.582209 2.1:+4672681 None:intergenic
TAGACACGTGACCCTGTTGG+TGG 0.583962 2.1:+4672287 None:intergenic
CTTCTGTGATGCATTGGCTG+AGG 0.585782 2.1:-4672680 MS.gene057016:CDS
GGCACCGTCATCATCATTGG+TGG 0.585980 2.1:+4672054 None:intergenic
AAAGAGGACACAATTTGCCA+TGG 0.587343 2.1:-4673552 MS.gene057016:CDS
CATCTCAGTCCATGTTGAGT+GGG 0.587878 2.1:-4672312 MS.gene057016:CDS
CTCCAAACTCAAGATATCCA+AGG 0.596098 2.1:-4672595 MS.gene057016:CDS
GCAACTTCCCATACCAGCAA+TGG 0.602937 2.1:+4671958 None:intergenic
AAAGCTATAACTTCAGCTTG+TGG 0.603171 2.1:+4673664 None:intergenic
AAGCACTTCTGCAGAAAGCA+CGG 0.603251 2.1:-4673415 MS.gene057016:CDS
GATGACGGTGCCGGTGCCGG+AGG 0.615538 2.1:-4672043 MS.gene057016:CDS
TTGGATTGACATAGCCAAGA+GGG 0.616520 2.1:+4672508 None:intergenic
TTCCCATACCAGCAATGGTG+AGG 0.621943 2.1:+4671963 None:intergenic
CAATAGACACGTGACCCTGT+TGG 0.624582 2.1:+4672284 None:intergenic
ACCAATGATGATGACGGTGC+CGG 0.625084 2.1:-4672052 MS.gene057016:CDS
ACTGTGGAACCCTCTTCTCA+AGG 0.626939 2.1:-4673291 MS.gene057016:intron
AGCTGCAGATGCTGGTTGGT+AGG 0.631564 2.1:+4672396 None:intergenic
TCAACCACCAATGATGATGA+CGG 0.633146 2.1:-4672058 MS.gene057016:CDS
GGTTGGTAGGATGGAAGTGT+AGG 0.641310 2.1:+4672409 None:intergenic
TTACAGAAAGCAGCTCAGAT+GGG 0.645481 2.1:-4672346 MS.gene057016:CDS
GTGAAGCTGCAGATGCTGGT+TGG 0.647374 2.1:+4672392 None:intergenic
AGACACGTGACCCTGTTGGT+GGG 0.651658 2.1:+4672288 None:intergenic
TGACCCATCAAGAGCCTTGG+GGG 0.652313 2.1:-4673455 MS.gene057016:CDS
TTTGTCACCAAAGACACTGA+TGG 0.656547 2.1:-4673644 MS.gene057016:CDS
AGGATATCACTATCAGAGAG+AGG 0.661126 2.1:+4671983 None:intergenic
GGGTCATGGTGCACACAAGT+TGG 0.674016 2.1:+4673472 None:intergenic
TTGAGTGGGACCCACCAACA+GGG 0.675919 2.1:-4672298 MS.gene057016:CDS
AAAGCTCACTCCAAAACCTG+TGG 0.698299 2.1:-4673334 MS.gene057016:CDS
AGAGAATACAGATGTGACTG+TGG 0.700052 2.1:-4673307 MS.gene057016:CDS
ATGACCCATCAAGAGCCTTG+GGG 0.705499 2.1:-4673456 MS.gene057016:CDS
GTTGGATTGACATAGCCAAG+AGG 0.725600 2.1:+4672507 None:intergenic
AATGCTGTAGCTGACATGTG+AGG 0.760209 2.1:+4672370 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTATTAAACTGTTT+AGG + chr2.1:4673000-4673019 None:intergenic 10.0%
!!! TTAAATATTATATGATTTTC+AGG - chr2.1:4673494-4673513 MS.gene057016:CDS 10.0%
!! ATCTTAATTGTTATAAATTG+TGG - chr2.1:4672150-4672169 MS.gene057016:CDS 15.0%
!!! CATATTTTGTTTATCTAAAT+TGG - chr2.1:4672487-4672506 MS.gene057016:CDS 15.0%
!! ACATTGATATATATTGATCT+AGG - chr2.1:4673082-4673101 MS.gene057016:intron 20.0%
!! ATTAAGATGAAAACAAAAGA+TGG + chr2.1:4672138-4672157 None:intergenic 20.0%
!! TATACTATTATCAACTTGAA+GGG + chr2.1:4673038-4673057 None:intergenic 20.0%
!!! AATATTATATGATTTTCAGG+AGG - chr2.1:4673497-4673516 MS.gene057016:CDS 20.0%
!!! ATATTATATGATTTTCAGGA+GGG - chr2.1:4673498-4673517 MS.gene057016:CDS 20.0%
!!! CAAACATTTTTTAAAGAAAG+TGG - chr2.1:4673135-4673154 MS.gene057016:intron 20.0%
!!! GAAAGTGGAAATTTTTAAAA+TGG - chr2.1:4673150-4673169 MS.gene057016:intron 20.0%
! AAAACTTAAGAAAATGAACC+TGG + chr2.1:4672114-4672133 None:intergenic 25.0%
! AACAACATGATAAACTCAAA+TGG - chr2.1:4673976-4673995 MS.gene057016:intron 25.0%
! AATCTTCAACTTCATAAAAG+AGG - chr2.1:4672655-4672674 MS.gene057016:CDS 25.0%
! AGAAAGAGTTGTTTATCATT+TGG + chr2.1:4674035-4674054 None:intergenic 25.0%
! ATCAAAGTTTCAACATGTTA+AGG - chr2.1:4673671-4673690 MS.gene057016:intron 25.0%
! GAAAAATCTGAAGAAAAACA+TGG - chr2.1:4672216-4672235 MS.gene057016:CDS 25.0%
! GAACATAATATCAATCATGA+TGG - chr2.1:4674123-4674142 MS.gene057016:intron 25.0%
! GTATACTATTATCAACTTGA+AGG + chr2.1:4673039-4673058 None:intergenic 25.0%
! TTTAACATGTTATGCTTGTT+TGG - chr2.1:4672337-4672356 MS.gene057016:CDS 25.0%
!! ATATATATTGATCTAGGACT+AGG - chr2.1:4673088-4673107 MS.gene057016:intron 25.0%
!! ATTTGAGTTTATCATGTTGT+TGG + chr2.1:4673977-4673996 None:intergenic 25.0%
AAAGAACAAGCAATGAGATA+AGG - chr2.1:4672704-4672723 MS.gene057016:CDS 30.0%
ACAACAATCATTAGTTGTTG+AGG - chr2.1:4671924-4671943 MS.gene057016:CDS 30.0%
ACTTGAAGGGATAAAATATG+TGG + chr2.1:4673025-4673044 None:intergenic 30.0%
ATAAATTGTGGTTATAGTCG+CGG - chr2.1:4672162-4672181 MS.gene057016:CDS 30.0%
ATAGTTATACCTTGAGAAGA+GGG + chr2.1:4672944-4672963 None:intergenic 30.0%
ATATGTGAGATCTGTAACAA+AGG - chr2.1:4672616-4672635 MS.gene057016:CDS 30.0%
CAACAAAATCATACTAACAC+CGG - chr2.1:4673312-4673331 MS.gene057016:CDS 30.0%
CACACAAAAATACAAAAGTG+AGG + chr2.1:4673469-4673488 None:intergenic 30.0%
GAATATTTCTTGGCTGTTAT+AGG - chr2.1:4673429-4673448 MS.gene057016:CDS 30.0%
TATAGTTATACCTTGAGAAG+AGG + chr2.1:4672945-4672964 None:intergenic 30.0%
! ATGTTTGACTTTATCTAGCT+AGG + chr2.1:4673122-4673141 None:intergenic 30.0%
! ATTTCATGGAACTTCTTTTG+AGG - chr2.1:4674065-4674084 MS.gene057016:intron 30.0%
! CAGATTTTTCCACAATATCA+TGG + chr2.1:4672206-4672225 None:intergenic 30.0%
! TGGGATAAATGTGAATTTTC+CGG + chr2.1:4673334-4673353 None:intergenic 30.0%
! TTTTTAATGTACGATCTCTG+TGG - chr2.1:4673185-4673204 MS.gene057016:intron 30.0%
!! CAATATACCGGTTTAATTAG+AGG + chr2.1:4672283-4672302 None:intergenic 30.0%
AAAACCATTCCCAAAAACCA+TGG - chr2.1:4674316-4674335 MS.gene057016:CDS 35.0%
AAACCATTCCCAAAAACCAT+GGG - chr2.1:4674317-4674336 MS.gene057016:CDS 35.0%
AAAGCTATAACTTCAGCTTG+TGG + chr2.1:4672562-4672581 None:intergenic 35.0%
AACAACTCTTTCTCTTCTTC+TGG - chr2.1:4674042-4674061 MS.gene057016:intron 35.0%
AAGAAAAGAAGAAACCTTCC+TGG - chr2.1:4672084-4672103 MS.gene057016:CDS 35.0%
AAGCTATAACTTCAGCTTGT+GGG + chr2.1:4672561-4672580 None:intergenic 35.0%
ACTTAGTACTCTCAAGTCTA+AGG - chr2.1:4673360-4673379 MS.gene057016:CDS 35.0%
ATAGTGCATGCTTAGATTGA+TGG - chr2.1:4673218-4673237 MS.gene057016:intron 35.0%
ATCCAACCTTGAATAGTTTG+AGG + chr2.1:4673752-4673771 None:intergenic 35.0%
GCAATGACCTCTAATTAAAC+CGG - chr2.1:4672273-4672292 MS.gene057016:CDS 35.0%
GCACTTACAAGAGATTTCTT+AGG - chr2.1:4674210-4674229 MS.gene057016:CDS 35.0%
GTGAAACAGAAAATGAGAGA+GGG - chr2.1:4673405-4673424 MS.gene057016:CDS 35.0%
TGAGTTTATCATGTTGTTGG+TGG + chr2.1:4673974-4673993 None:intergenic 35.0%
TGTGAAACAGAAAATGAGAG+AGG - chr2.1:4673404-4673423 MS.gene057016:CDS 35.0%
TTAATTAGAGGTCATTGCAG+TGG + chr2.1:4672271-4672290 None:intergenic 35.0%
TTCTCTTCTTCTGGATTTCA+TGG - chr2.1:4674051-4674070 MS.gene057016:intron 35.0%
TTGTGTAGGTTGTGGAATTA+CGG + chr2.1:4673581-4673600 None:intergenic 35.0%
TTTGGAGATTGTTCATGTTG+TGG + chr2.1:4673615-4673634 None:intergenic 35.0%
! AATTACCTTCCCATGGTTTT+TGG + chr2.1:4674329-4674348 None:intergenic 35.0%
! AGGTTTCTTCTTTTCTTAGC+TGG + chr2.1:4672081-4672100 None:intergenic 35.0%
! AGTTGATGCAAAATTCTCTC+AGG - chr2.1:4672014-4672033 MS.gene057016:CDS 35.0%
! ATTACCTTCCCATGGTTTTT+GGG + chr2.1:4674328-4674347 None:intergenic 35.0%
! GAAGAAAAACATGGTTGATG+CGG - chr2.1:4672225-4672244 MS.gene057016:CDS 35.0%
! GTTATGCTTGTTTGGAATCA+TGG - chr2.1:4672345-4672364 MS.gene057016:CDS 35.0%
! TAGGGTTAGGGTTTTCATAA+AGG + chr2.1:4673786-4673805 None:intergenic 35.0%
! TATCATTTGGTCTTCACATG+AGG + chr2.1:4674022-4674041 None:intergenic 35.0%
! TCTAATTTGACTTCTGCATC+TGG - chr2.1:4671955-4671974 MS.gene057016:CDS 35.0%
!! GAATTTTGTTGTGTAGGTTG+TGG + chr2.1:4673589-4673608 None:intergenic 35.0%
!! GGAATGGTTTTCTTGATGAT+CGG + chr2.1:4674307-4674326 None:intergenic 35.0%
!! TCTTTTGAGGATACTTTTGC+TGG - chr2.1:4674078-4674097 MS.gene057016:intron 35.0%
!! TGGTGAGAATTTTGTTGTGT+AGG + chr2.1:4673595-4673614 None:intergenic 35.0%
AAAGAGGACACAATTTGCCA+TGG - chr2.1:4672671-4672690 MS.gene057016:CDS 40.0%
AATATGAATGCGCGCATGTT+TGG + chr2.1:4672473-4672492 None:intergenic 40.0%
ACCTCTCCTCAAACTATTCA+AGG - chr2.1:4673743-4673762 MS.gene057016:intron 40.0%
ACCTTGAATAGTTTGAGGAG+AGG + chr2.1:4673747-4673766 None:intergenic 40.0%
AGAGAATACAGATGTGACTG+TGG - chr2.1:4672916-4672935 MS.gene057016:intron 40.0%
AGCCTTGGATATCTTGAGTT+TGG + chr2.1:4673633-4673652 None:intergenic 40.0%
AGGATATCACTATCAGAGAG+AGG + chr2.1:4674243-4674262 None:intergenic 40.0%
AGTATGCAGTTCAATCAGAC+TGG - chr2.1:4672866-4672885 MS.gene057016:intron 40.0%
AGTGCTTCTTGATACCAGTT+AGG + chr2.1:4672795-4672814 None:intergenic 40.0%
ATGTACGATCTCTGTGGTTA+TGG - chr2.1:4673191-4673210 MS.gene057016:intron 40.0%
CGCTATGAACCATGATATTG+TGG - chr2.1:4672194-4672213 MS.gene057016:CDS 40.0%
CGTTTGCATCAGCAATATAC+CGG + chr2.1:4672295-4672314 None:intergenic 40.0%
CTCCAAACTCAAGATATCCA+AGG - chr2.1:4673628-4673647 MS.gene057016:CDS 40.0%
CTCCTCAAACTATTCAAGGT+TGG - chr2.1:4673747-4673766 MS.gene057016:intron 40.0%
CTCGAGCTTCAACAAAATCA+CGG + chr2.1:4672391-4672410 None:intergenic 40.0%
CTTTCTTCAATGTCAAGCCT+TGG + chr2.1:4673648-4673667 None:intergenic 40.0%
GAAAACCCTAACCCTAGAAA+TGG - chr2.1:4673790-4673809 MS.gene057016:intron 40.0%
GAAGCTAGTGCTAATTCTTC+TGG - chr2.1:4671979-4671998 MS.gene057016:CDS 40.0%
GAAGTGTAGGACCATTTCTA+GGG + chr2.1:4673804-4673823 None:intergenic 40.0%
GAGAGAGGGTGAATATTTCT+TGG - chr2.1:4673419-4673438 MS.gene057016:CDS 40.0%
GGCATTTGTACTTCTTGTTC+TGG + chr2.1:4673697-4673716 None:intergenic 40.0%
GTTCTTTGCTTCAACTTCCA+TGG + chr2.1:4672691-4672710 None:intergenic 40.0%
TGGCATCACAACTACAATTG+CGG + chr2.1:4672251-4672270 None:intergenic 40.0%
TGTAAGTGCATTGTTTCCTC+CGG + chr2.1:4674199-4674218 None:intergenic 40.0%
TGTACGATCTCTGTGGTTAT+GGG - chr2.1:4673192-4673211 MS.gene057016:intron 40.0%
TTACAGAAAGCAGCTCAGAT+GGG - chr2.1:4673877-4673896 MS.gene057016:intron 40.0%
TTGGATTGACATAGCCAAGA+GGG + chr2.1:4673718-4673737 None:intergenic 40.0%
TTTGTCACCAAAGACACTGA+TGG - chr2.1:4672579-4672598 MS.gene057016:CDS 40.0%
TTTGTTGCCATCAGTGTCTT+TGG + chr2.1:4672589-4672608 None:intergenic 40.0%
! AAGAAGTACAAATGCCCTCT+TGG - chr2.1:4673701-4673720 MS.gene057016:intron 40.0%
! TCAACCACCAATGATGATGA+CGG - chr2.1:4674165-4674184 MS.gene057016:CDS 40.0%
!! GAGAGTACTAAGTGCATGTT+GGG + chr2.1:4673353-4673372 None:intergenic 40.0%
!! GTTTTCTTGATGATCGGAGT+TGG + chr2.1:4674301-4674320 None:intergenic 40.0%
!! TAGGACCATTTCTAGGGTTA+GGG + chr2.1:4673798-4673817 None:intergenic 40.0%
!! TGAGAGTACTAAGTGCATGT+TGG + chr2.1:4673354-4673373 None:intergenic 40.0%
AAAGCTCACTCCAAAACCTG+TGG - chr2.1:4672889-4672908 MS.gene057016:intron 45.0%
AAGCACTTCTGCAGAAAGCA+CGG - chr2.1:4672808-4672827 MS.gene057016:intron 45.0%
AATGCTGTAGCTGACATGTG+AGG + chr2.1:4673856-4673875 None:intergenic 45.0%
AGTGATATCCTCACCATTGC+TGG - chr2.1:4674252-4674271 MS.gene057016:CDS 45.0%
ATCCTCACCATTGCTGGTAT+GGG - chr2.1:4674258-4674277 MS.gene057016:CDS 45.0%
CATCTCAGTCCATGTTGAGT+GGG - chr2.1:4673911-4673930 MS.gene057016:intron 45.0%
CATTCCCAAAAACCATGGGA+AGG - chr2.1:4674321-4674340 MS.gene057016:CDS 45.0%
GAAAATGAACCTGGATTGCC+AGG + chr2.1:4672105-4672124 None:intergenic 45.0%
GAGCTTCAACAAAATCACGG+TGG + chr2.1:4672388-4672407 None:intergenic 45.0%
GTTACAGAAAGCAGCTCAGA+TGG - chr2.1:4673876-4673895 MS.gene057016:intron 45.0%
GTTGGATTGACATAGCCAAG+AGG + chr2.1:4673719-4673738 None:intergenic 45.0%
GTTTGAGGAGAGGTCAATGT+TGG + chr2.1:4673737-4673756 None:intergenic 45.0%
TATCCTCACCATTGCTGGTA+TGG - chr2.1:4674257-4674276 MS.gene057016:CDS 45.0%
TCATCTCAGTCCATGTTGAG+TGG - chr2.1:4673910-4673929 MS.gene057016:intron 45.0%
TCTGTATTCTCTTGTGCCAC+AGG + chr2.1:4672908-4672927 None:intergenic 45.0%
TGTGGTTATAGTCGCGGTTA+TGG - chr2.1:4672168-4672187 MS.gene057016:CDS 45.0%
! ATTGATCTAGGACTAGGAGC+AGG - chr2.1:4673094-4673113 MS.gene057016:intron 45.0%
! GGAAGTGTAGGACCATTTCT+AGG + chr2.1:4673805-4673824 None:intergenic 45.0%
! TTCTCTTGTGCCACAGGTTT+TGG + chr2.1:4672902-4672921 None:intergenic 45.0%
!! CTTCCCATGGTTTTTGGGAA+TGG + chr2.1:4674323-4674342 None:intergenic 45.0%
!! GTAGGACCATTTCTAGGGTT+AGG + chr2.1:4673799-4673818 None:intergenic 45.0%
ACTGTGGAACCCTCTTCTCA+AGG - chr2.1:4672932-4672951 MS.gene057016:intron 50.0%
AGAAACCTTCCTGGCAATCC+AGG - chr2.1:4672093-4672112 MS.gene057016:CDS 50.0%
ATGAACCTGGATTGCCAGGA+AGG + chr2.1:4672101-4672120 None:intergenic 50.0%
ATGACCCATCAAGAGCCTTG+GGG - chr2.1:4672767-4672786 MS.gene057016:intron 50.0%
CAATAGACACGTGACCCTGT+TGG + chr2.1:4673942-4673961 None:intergenic 50.0%
CAGAGCCTTCTGTGATGCAT+TGG - chr2.1:4673537-4673556 MS.gene057016:CDS 50.0%
CATGACCCATCAAGAGCCTT+GGG - chr2.1:4672766-4672785 MS.gene057016:intron 50.0%
CTCAGCCAATGCATCACAGA+AGG + chr2.1:4673545-4673564 None:intergenic 50.0%
GCAACTTCCCATACCAGCAA+TGG + chr2.1:4674268-4674287 None:intergenic 50.0%
GCGTAGCATCTGCAAACTCA+CGG - chr2.1:4672412-4672431 MS.gene057016:CDS 50.0%
TTCCCATACCAGCAATGGTG+AGG + chr2.1:4674263-4674282 None:intergenic 50.0%
! CAACATGGACTGAGATGAGC+TGG + chr2.1:4673908-4673927 None:intergenic 50.0%
! GAAAGCACGGTGAGAAGAAG+TGG - chr2.1:4672821-4672840 MS.gene057016:intron 50.0%
!! ACCAATGATGATGACGGTGC+CGG - chr2.1:4674171-4674190 MS.gene057016:CDS 50.0%
!! CTTCTGTGATGCATTGGCTG+AGG - chr2.1:4673543-4673562 MS.gene057016:CDS 50.0%
!! GGTTGGTAGGATGGAAGTGT+AGG + chr2.1:4673817-4673836 None:intergenic 50.0%
!! TGGTGCACACAAGTTGGTTC+TGG + chr2.1:4672748-4672767 None:intergenic 50.0%
ACCGGCACCGTCATCATCAT+TGG + chr2.1:4674175-4674194 None:intergenic 55.0%
AGACACGTGACCCTGTTGGT+GGG + chr2.1:4673938-4673957 None:intergenic 55.0%
CCATGACCCATCAAGAGCCT+TGG - chr2.1:4672765-4672784 MS.gene057016:intron 55.0%
GATACCAGTTAGGTCCCCCA+AGG + chr2.1:4672785-4672804 None:intergenic 55.0%
GGCACCGTCATCATCATTGG+TGG + chr2.1:4674172-4674191 None:intergenic 55.0%
GGGTCATGGTGCACACAAGT+TGG + chr2.1:4672754-4672773 None:intergenic 55.0%
GTGAAGCTGCAGATGCTGGT+TGG + chr2.1:4673834-4673853 None:intergenic 55.0%
TAGACACGTGACCCTGTTGG+TGG + chr2.1:4673939-4673958 None:intergenic 55.0%
TGACCCATCAAGAGCCTTGG+GGG - chr2.1:4672768-4672787 MS.gene057016:intron 55.0%
TGAGGTGAAGCTGCAGATGC+TGG + chr2.1:4673838-4673857 None:intergenic 55.0%
TGCATTGTTTCCTCCGGCAC+CGG + chr2.1:4674193-4674212 None:intergenic 55.0%
TTGAGTGGGACCCACCAACA+GGG - chr2.1:4673925-4673944 MS.gene057016:intron 55.0%
! AGCTGCAGATGCTGGTTGGT+AGG + chr2.1:4673830-4673849 None:intergenic 55.0%
! CCAAGGCTCTTGATGGGTCA+TGG + chr2.1:4672768-4672787 None:intergenic 55.0%
! TTGGTGGGTCCCACTCAACA+TGG + chr2.1:4673923-4673942 None:intergenic 55.0%
!! GCAGATGCTGGTTGGTAGGA+TGG + chr2.1:4673826-4673845 None:intergenic 55.0%
AGAGCCTTGGGGGACCTAAC+TGG - chr2.1:4672778-4672797 MS.gene057016:intron 60.0%
AGGTCCCCCAAGGCTCTTGA+TGG + chr2.1:4672775-4672794 None:intergenic 60.0%
GGTCCCCCAAGGCTCTTGAT+GGG + chr2.1:4672774-4672793 None:intergenic 60.0%
GTTGAGTGGGACCCACCAAC+AGG - chr2.1:4673924-4673943 MS.gene057016:intron 60.0%
!! GATGATGACGGTGCCGGTGC+CGG - chr2.1:4674177-4674196 MS.gene057016:CDS 65.0%
!! GATGACGGTGCCGGTGCCGG+AGG - chr2.1:4674180-4674199 MS.gene057016:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 4671895 4674350 4671895 ID=MS.gene057016
chr2.1 mRNA 4671895 4674350 4671895 ID=MS.gene057016.t1;Parent=MS.gene057016
chr2.1 exon 4674131 4674350 4674131 ID=MS.gene057016.t1.exon1;Parent=MS.gene057016.t1
chr2.1 CDS 4674131 4674350 4674131 ID=cds.MS.gene057016.t1;Parent=MS.gene057016.t1
chr2.1 exon 4673292 4673688 4673292 ID=MS.gene057016.t1.exon2;Parent=MS.gene057016.t1
chr2.1 CDS 4673292 4673688 4673292 ID=cds.MS.gene057016.t1;Parent=MS.gene057016.t1
chr2.1 exon 4671895 4672729 4671895 ID=MS.gene057016.t1.exon3;Parent=MS.gene057016.t1
chr2.1 CDS 4671895 4672729 4671895 ID=cds.MS.gene057016.t1;Parent=MS.gene057016.t1
Gene Sequence

>MS.gene057016

ATGATCAAAGGTTTTATGTCTCAACAAGAACAACAATCATTAGTTGTTGAGGAAAACATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCTTCTGGAAACAGAACTGAAGTTGATGCAAAATTCTCTCAGGAATACTTTGCTTCATCACAAACTCAAACTCATGATGAGACTCCAGCTAAGAAAAGAAGAAACCTTCCTGGCAATCCAGGTTCATTTTCTTAAGTTTTACCATCTTTTGTTTTCATCTTAATTGTTATAAATTGTGGTTATAGTCGCGGTTATGGTTACGCTATGAACCATGATATTGTGGAAAAATCTGAAGAAAAACATGGTTGATGCGGCCGCAATTGTAGTTGTGATGCCACTGCAATGACCTCTAATTAAACCGGTATATTGCTGATGCAAACGACAATTTAGAACTACATGTGTATTTAACATGTTATGCTTGTTTGGAATCATGGTAGATTTGACAAAGTTACCACCGTGATTTTGTTGAAGCTCGAGAGCGTAGCATCTGCAAACTCACGGTGACTGACAATGATTTTATCAAACTCATCGTGAATCCAAACATGCGCGCATTCATATTTTGTTTATCTAAATTGGATTTCTTTTGTTTTGTGTTTGTTTTTATATTTGATTATTCATTTTAGACCCACAAGCTGAAGTTATAGCTTTGTCACCAAAGACACTGATGGCAACAAATAGATTCATATGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAGAATCTTCAACTTCATAAAAGAGGACACAATTTGCCATGGAAGTTGAAGCAAAGAACAAGCAATGAGATAAGGAAGAAAGTGTATGTGTGTCCAGAACCAACTTGTGTGCACCATGACCCATCAAGAGCCTTGGGGGACCTAACTGGTATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTATGCAGTTCAATCAGACTGGAAAGCTCACTCCAAAACCTGTGGCACAAGAGAATACAGATGTGACTGTGGAACCCTCTTCTCAAGGTATAACTATAACTATAACTATAACTATAAATATATTAACTAACCTAAACAGTTTAATAAAATAATTACCACATATTTTATCCCTTCAAGTTGATAATAGTATACTGAACATGTAAAAAGAGTTCAATACATTGATATATATTGATCTAGGACTAGGAGCAGGTACCTAGCTAGATAAAGTCAAACATTTTTTAAAGAAAGTGGAAATTTTTAAAATGGAAAATTGAATTTTTTTTAATGTACGATCTCTGTGGTTATGGGTGCATAGTGCATGCTTAGATTGATGGTGAATTTCTCAGAATCATTTAGAATCACATTGTATCATTGTAATTTTGACAAAAGTTATACTTTAGAGTTTCAACAAAATCATACTAACACCGGAAAATTCACATTTATCCCAACATGCACTTAGTACTCTCAAGTCTAAGGAGAGTGAGACTAAAAAAATGATGTGAAACAGAAAATGAGAGAGGGTGAATATTTCTTGGCTGTTATAGGATTTTAGTAAAAAACCTCACTTTTGTATTTTTGTGTGTTTGTTTAAATATTATATGATTTTCAGGAGGGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTGGCTGAGGAGAGTTCAAGAACCGTAATTCCACAACCTACACAACAAAATTCTCACCACAACATGAACAATCTCCAAACTCAAGATATCCAAGGCTTGACATTGAAGAAAGAGCATCAAAGTTTCAACATGTTAAGGCCAGAACAAGAAGTACAAATGCCCTCTTGGCTATGTCAATCCAACATTGACCTCTCCTCAAACTATTCAAGGTTGGATCAAGATCTACACCTTTATGAAAACCCTAACCCTAGAAATGGTCCTACACTTCCATCCTACCAACCAGCATCTGCAGCTTCACCTCACATGTCAGCTACAGCATTGTTACAGAAAGCAGCTCAGATGGGTGCAACCAGCTCATCTCAGTCCATGTTGAGTGGGACCCACCAACAGGGTCACGTGTCTATTGTTGACTCTGCCACCAACAACATGATAAACTCAAATGGTAATTTTAGTTTGAATTTGTCCTCATGTGAAGACCAAATGATAAACAACTCTTTCTCTTCTTCTGGATTTCATGGAACTTCTTTTGAGGATACTTTTGCTGGAAATATTCTTCATTCAAATCAAGAACATAATATCAATCATGATGGTAATAATGATATTACAAAATCAACCACCAATGATGATGACGGTGCCGGTGCCGGAGGAAACAATGCACTTACAAGAGATTTCTTAGGTCTTAAACCTCTCTCTGATAGTGATATCCTCACCATTGCTGGTATGGGAAGTTGCATGAACTCTTCCAACTCCGATCATCAAGAAAACCATTCCCAAAAACCATGGGAAGGTAATTAG
Protein sequence

>MS.gene057016.t1

MIKGFMSQQEQQSLVVEENMSNLTSASGEASANSSGNRTEVDAKFSQEYFASSQTQTHDETPAKKRRNLPGNPDPQAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTSNEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESSRTVIPQPTQQNSHHNMNNLQTQDIQGLTLKKEHQSFNMLRPEQEVQMPSWLCQSNIDLSSNYSRLDQDLHLYENPNPRNGPTLPSYQPASAASPHMSATALLQKAAQMGATSSSQSMLSGTHQQGHVSIVDSATNNMINSNGNFSLNLSSCEDQMINNSFSSSGFHGTSFEDTFAGNILHSNQEHNINHDGNNDITKSTTNDDDGAGAGGNNALTRDFLGLKPLSDSDILTIAGMGSCMNSSNSDHQENHSQKPWEGN