Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057219.t1 | XP_003602338.1 | 82.7 | 560 | 77 | 5 | 1 | 560 | 1 | 540 | 1.60E-229 | 805.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057219.t1 | Q6AWY3 | 29.9 | 461 | 260 | 11 | 107 | 534 | 141 | 571 | 1.1e-19 | 99.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057219.t1 | G7J891 | 82.7 | 560 | 77 | 5 | 1 | 560 | 1 | 540 | 1.2e-229 | 805.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene057219.t1 | TF | GRF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057219.t1 | MTR_3g092330 | 91.429 | 560 | 28 | 7 | 1 | 560 | 1 | 540 | 0.0 | 929 |
MS.gene057219.t1 | MTR_1g017490 | 52.632 | 133 | 37 | 3 | 110 | 218 | 126 | 256 | 1.49e-33 | 135 |
MS.gene057219.t1 | MTR_1g017490 | 54.331 | 127 | 28 | 4 | 116 | 218 | 3 | 123 | 4.42e-33 | 133 |
MS.gene057219.t1 | MTR_0001s0490 | 53.153 | 111 | 35 | 2 | 128 | 221 | 25 | 135 | 3.13e-32 | 127 |
MS.gene057219.t1 | MTR_5g027030 | 57.000 | 100 | 35 | 2 | 126 | 218 | 14 | 112 | 6.22e-30 | 120 |
MS.gene057219.t1 | MTR_8g020560 | 50.450 | 111 | 33 | 3 | 129 | 219 | 12 | 120 | 1.76e-29 | 119 |
MS.gene057219.t1 | MTR_2g041430 | 50.000 | 114 | 35 | 3 | 128 | 219 | 7 | 120 | 3.48e-29 | 119 |
MS.gene057219.t1 | MTR_2g041430 | 50.000 | 114 | 35 | 3 | 128 | 219 | 7 | 120 | 4.44e-29 | 118 |
MS.gene057219.t1 | MTR_2g041430 | 50.000 | 114 | 35 | 3 | 128 | 219 | 7 | 120 | 4.57e-29 | 118 |
MS.gene057219.t1 | MTR_7g104050 | 44.604 | 139 | 50 | 3 | 109 | 225 | 60 | 193 | 9.41e-29 | 117 |
MS.gene057219.t1 | MTR_4g125490 | 49.153 | 118 | 42 | 3 | 128 | 227 | 9 | 126 | 1.00e-28 | 119 |
MS.gene057219.t1 | MTR_7g104050 | 44.604 | 139 | 50 | 3 | 109 | 225 | 60 | 193 | 1.26e-28 | 118 |
MS.gene057219.t1 | MTR_8g035910 | 46.218 | 119 | 51 | 3 | 127 | 233 | 48 | 165 | 3.45e-23 | 102 |
MS.gene057219.t1 | MTR_8g035910 | 56.667 | 60 | 25 | 1 | 154 | 212 | 276 | 335 | 7.89e-14 | 73.9 |
MS.gene057219.t1 | MTR_8g035640 | 52.542 | 59 | 27 | 1 | 155 | 212 | 31 | 89 | 1.71e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057219.t1 | AT4G37740 | 54.701 | 117 | 35 | 3 | 128 | 227 | 164 | 279 | 3.62e-33 | 133 |
MS.gene057219.t1 | AT5G53660 | 56.140 | 114 | 46 | 2 | 126 | 235 | 57 | 170 | 1.31e-32 | 129 |
MS.gene057219.t1 | AT2G22840 | 54.310 | 116 | 35 | 2 | 128 | 226 | 133 | 247 | 2.83e-31 | 128 |
MS.gene057219.t1 | AT3G13960 | 51.327 | 113 | 37 | 2 | 124 | 218 | 12 | 124 | 6.71e-30 | 122 |
MS.gene057219.t1 | AT4G24150 | 41.718 | 163 | 64 | 5 | 102 | 242 | 90 | 243 | 3.98e-29 | 120 |
MS.gene057219.t1 | AT4G24150 | 41.718 | 163 | 64 | 5 | 102 | 242 | 128 | 281 | 7.85e-29 | 120 |
MS.gene057219.t1 | AT2G36400 | 52.137 | 117 | 35 | 1 | 129 | 224 | 77 | 193 | 1.82e-28 | 117 |
MS.gene057219.t1 | AT3G52910 | 49.107 | 112 | 35 | 1 | 129 | 218 | 83 | 194 | 2.54e-26 | 111 |
MS.gene057219.t1 | AT2G06200 | 42.759 | 145 | 48 | 5 | 102 | 216 | 23 | 162 | 1.36e-25 | 107 |
MS.gene057219.t1 | AT4G24150 | 36.170 | 188 | 64 | 5 | 102 | 242 | 128 | 306 | 1.50e-25 | 110 |
MS.gene057219.t1 | AT2G06200 | 46.610 | 118 | 34 | 3 | 128 | 216 | 6 | 123 | 2.17e-25 | 105 |
MS.gene057219.t1 | AT2G45480 | 44.444 | 108 | 42 | 2 | 126 | 215 | 22 | 129 | 7.99e-19 | 87.8 |
MS.gene057219.t1 | AT2G45480 | 44.444 | 108 | 42 | 2 | 126 | 215 | 22 | 129 | 4.36e-18 | 87.4 |
MS.gene057219.t1 | AT2G45480 | 50.000 | 74 | 32 | 3 | 154 | 227 | 289 | 357 | 2.35e-13 | 72.8 |
MS.gene057219.t1 | AT2G45480 | 44.444 | 108 | 42 | 2 | 126 | 215 | 20 | 127 | 4.42e-18 | 87.4 |
MS.gene057219.t1 | AT2G45480 | 50.000 | 74 | 32 | 3 | 154 | 227 | 287 | 355 | 2.39e-13 | 72.8 |
MS.gene057219.t1 | AT2G06200 | 72.727 | 44 | 10 | 1 | 175 | 216 | 8 | 51 | 6.88e-16 | 76.3 |
Find 128 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAAAAGGTTGAAAATTTA+AGG | 0.123717 | 3.2:-77736794 | None:intergenic |
TAAACACAAACTAACCTTTA+AGG | 0.146408 | 3.2:-77736840 | None:intergenic |
GCTTCCAACACAACCCTTAA+AGG | 0.155280 | 3.2:+77736826 | MS.gene057219:CDS |
TCCCTTGGCGCTTCTAATTC+AGG | 0.215472 | 3.2:+77738186 | MS.gene057219:CDS |
CTTTCACAGTACTTGTTATT+AGG | 0.229946 | 3.2:-77737472 | None:intergenic |
TCAATTTGAGGCTATCAAAT+AGG | 0.264552 | 3.2:+77737374 | MS.gene057219:CDS |
ACAACATACAACATGTCTTT+TGG | 0.266442 | 3.2:+77736718 | MS.gene057219:CDS |
AATCCAACTACAAGAAAATA+TGG | 0.279540 | 3.2:+77737649 | MS.gene057219:CDS |
TTAGAAGCGCCAAGGGAAAT+TGG | 0.295713 | 3.2:-77738180 | None:intergenic |
AACCTCTTGGTTTCTCAGAT+TGG | 0.311180 | 3.2:-77738386 | None:intergenic |
GCCCTTGATGATGCAACATT+TGG | 0.323926 | 3.2:-77738867 | None:intergenic |
TATGATTTACAAGTACTTGA+TGG | 0.325776 | 3.2:+77737059 | MS.gene057219:CDS |
GTCGAATCCATTGCCACTTC+AGG | 0.358075 | 3.2:+77738762 | MS.gene057219:CDS |
GTGGAAATGAATTCAGATAC+TGG | 0.360987 | 3.2:-77738281 | None:intergenic |
AAACACAAACTAACCTTTAA+GGG | 0.361293 | 3.2:-77736839 | None:intergenic |
ACTACTAGTGTTATTGTTGT+TGG | 0.363306 | 3.2:-77736548 | None:intergenic |
TTCCACAGGCTTTCTTGAAC+GGG | 0.370446 | 3.2:-77737515 | None:intergenic |
GTCCACTAGCTGAAGTTCTA+AGG | 0.379508 | 3.2:+77738667 | MS.gene057219:CDS |
ATGATTAAACTTATTGAGTA+AGG | 0.386331 | 3.2:-77738904 | None:intergenic |
GCTAATGCTATCATTGATAA+TGG | 0.393717 | 3.2:+77736763 | MS.gene057219:CDS |
ATGGCGGCTTCAATAGGAAT+AGG | 0.401179 | 3.2:+77736988 | MS.gene057219:CDS |
TCCATTGCCACTTCAGGAAC+AGG | 0.402246 | 3.2:+77738768 | MS.gene057219:CDS |
GCTGTTGATGCTGATGGTTA+TGG | 0.403679 | 3.2:+77736691 | MS.gene057219:CDS |
TTCATCACTTGATCTATCAA+TGG | 0.407184 | 3.2:+77738515 | MS.gene057219:CDS |
GGATTCAGTGTTATTATGAT+AGG | 0.409147 | 3.2:-77738259 | None:intergenic |
ATAGTCATCATCAAATCAAA+AGG | 0.419333 | 3.2:+77737566 | MS.gene057219:CDS |
TTTGCATAATAGCAGCTTTG+AGG | 0.429903 | 3.2:+77737732 | MS.gene057219:CDS |
CTTCTGCACCTACCAGCCTC+TGG | 0.433695 | 3.2:-77737409 | None:intergenic |
GGTGGAATGGCGGCTTCAAT+AGG | 0.433909 | 3.2:+77736982 | MS.gene057219:CDS |
ACCATTGTTGGAGGTGGTGG+TGG | 0.435162 | 3.2:-77738466 | None:intergenic |
GAAAATGAAGATTGGAGATA+AGG | 0.436913 | 3.2:-77737709 | None:intergenic |
TGGATGGTGGTTTCAATTTG+AGG | 0.446579 | 3.2:+77737362 | MS.gene057219:CDS |
CTCCTTTCACAATTGCTCAA+TGG | 0.446940 | 3.2:+77737016 | MS.gene057219:CDS |
GGCTCAATCCAGCCCAACCT+TGG | 0.448375 | 3.2:+77738625 | MS.gene057219:CDS |
GGATTAAGTAAGAGAGGAAA+GGG | 0.448727 | 3.2:-77738339 | None:intergenic |
TCTGCTGCTGTTGATGCTGA+TGG | 0.451525 | 3.2:+77736685 | MS.gene057219:CDS |
GAAGCAGAAATGTTATGAAA+AGG | 0.454915 | 3.2:-77736808 | None:intergenic |
ATTGTTGGAGGTGGTGGTGG+TGG | 0.456677 | 3.2:-77738463 | None:intergenic |
CTGATGCATAACAACAAACT+TGG | 0.457493 | 3.2:+77738219 | MS.gene057219:CDS |
TATGCAAAGAAAATGAAGAT+TGG | 0.460286 | 3.2:-77737717 | None:intergenic |
AACTGATGCAGAACCATTGT+TGG | 0.462885 | 3.2:-77738478 | None:intergenic |
GAAAGAAGATGAGAAGGAAC+AGG | 0.467897 | 3.2:-77737090 | None:intergenic |
TCATCACTTGATCTATCAAT+GGG | 0.468999 | 3.2:+77738516 | MS.gene057219:CDS |
AGAATTTGTTGCATCACTGC+TGG | 0.475974 | 3.2:-77738706 | None:intergenic |
GAACCTACCCAAGGTTGGGC+TGG | 0.475979 | 3.2:-77738633 | None:intergenic |
AAGATTGGAGATAAGGATGA+AGG | 0.477847 | 3.2:-77737702 | None:intergenic |
CTAAAATAGCATTCTCAAGT+TGG | 0.478113 | 3.2:+77738604 | MS.gene057219:CDS |
AATAACACTAGTAGTGTTGT+TGG | 0.478175 | 3.2:+77736556 | MS.gene057219:CDS |
CTAACCTTTAAGGGTTGTGT+TGG | 0.481457 | 3.2:-77736830 | None:intergenic |
TCCTGTTCCTGAAGTGGCAA+TGG | 0.484261 | 3.2:-77738769 | None:intergenic |
GGAACAGCCACAGTAAAATC+AGG | 0.486638 | 3.2:-77737622 | None:intergenic |
AGTTCAGAACTGTTATATAG+TGG | 0.490372 | 3.2:-77738300 | None:intergenic |
TGATAGATCAAGTGATGAAA+GGG | 0.490826 | 3.2:-77738511 | None:intergenic |
TCAATGAAACTAAAACCTCT+TGG | 0.493104 | 3.2:-77738399 | None:intergenic |
GAGATAAGGATGAAGGGGAG+TGG | 0.496353 | 3.2:-77737695 | None:intergenic |
GTCCAAATGTTGCATCATCA+AGG | 0.496502 | 3.2:+77738865 | MS.gene057219:CDS |
AGATTGGAGATAAGGATGAA+GGG | 0.498515 | 3.2:-77737701 | None:intergenic |
TTATTTGTGTGAAGTTCCAC+AGG | 0.498667 | 3.2:-77737529 | None:intergenic |
CTGCTGGAAGTAACATTGCT+TGG | 0.498835 | 3.2:-77738690 | None:intergenic |
GCTCAATCCAGCCCAACCTT+GGG | 0.505605 | 3.2:+77738626 | MS.gene057219:CDS |
AGAACCATTGTTGGAGGTGG+TGG | 0.506509 | 3.2:-77738469 | None:intergenic |
GTTCCACAGGCTTTCTTGAA+CGG | 0.508728 | 3.2:-77737516 | None:intergenic |
TGTTGAACCTACCCAAGGTT+GGG | 0.509162 | 3.2:-77738637 | None:intergenic |
TTTCTTGTAGTTGGATTAGG+AGG | 0.509981 | 3.2:-77737643 | None:intergenic |
GGCTTGGAGTGGATGCTGAA+TGG | 0.510711 | 3.2:+77738153 | MS.gene057219:CDS |
GATTGGAGATAAGGATGAAG+GGG | 0.516351 | 3.2:-77737700 | None:intergenic |
TGGCGGCTTCAATAGGAATA+GGG | 0.523564 | 3.2:+77736989 | MS.gene057219:CDS |
TCAGATTGGAGAGTTTGCAT+TGG | 0.524106 | 3.2:-77738372 | None:intergenic |
GAATTGAATGAAAAGGGGCT+TGG | 0.524945 | 3.2:+77738137 | MS.gene057219:intron |
CACTAGTAGTGTTGTTGGGT+CGG | 0.525074 | 3.2:+77736561 | MS.gene057219:CDS |
GGGATTAAGTAAGAGAGGAA+AGG | 0.533228 | 3.2:-77738340 | None:intergenic |
GGCCTTAGAACTTCAGCTAG+TGG | 0.534033 | 3.2:-77738669 | None:intergenic |
TTGATAGATCAAGTGATGAA+AGG | 0.535432 | 3.2:-77738512 | None:intergenic |
CTCCATTGAGCAATTGTGAA+AGG | 0.540021 | 3.2:-77737018 | None:intergenic |
AATGGAGATCCAATTTCCCT+TGG | 0.541965 | 3.2:+77738171 | MS.gene057219:CDS |
TACCATTCCTGTTCCTGAAG+TGG | 0.542786 | 3.2:-77738775 | None:intergenic |
GGAATGGTATCATCTCCATC+TGG | 0.544391 | 3.2:+77738789 | MS.gene057219:CDS |
ATTATGATAGGAACTTCCAT+TGG | 0.546307 | 3.2:-77738247 | None:intergenic |
ACCACCACCACCTCCAACAA+TGG | 0.549376 | 3.2:+77738465 | MS.gene057219:CDS |
GCTTCAGTTTCTGATAGTAG+TGG | 0.551865 | 3.2:+77738834 | MS.gene057219:CDS |
ATACATGAAAGAAGATGAGA+AGG | 0.554354 | 3.2:-77737096 | None:intergenic |
GGTGGTCACAGCAGGTGGAA+TGG | 0.556637 | 3.2:+77736969 | MS.gene057219:intron |
AACAATGGTTCTGCATCAGT+TGG | 0.557664 | 3.2:+77738480 | MS.gene057219:CDS |
TTATTATGCAAAACACCAGA+TGG | 0.559997 | 3.2:-77738804 | None:intergenic |
AAAGACATGTTGTATGTTGT+GGG | 0.561732 | 3.2:-77736715 | None:intergenic |
AAAAGACATGTTGTATGTTG+TGG | 0.562174 | 3.2:-77736716 | None:intergenic |
AACAATACTGATCCAGAGGC+TGG | 0.566845 | 3.2:+77737397 | MS.gene057219:CDS |
TGAGTTTCGCGTTCAAGACA+AGG | 0.567509 | 3.2:+77736510 | MS.gene057219:CDS |
GTTTGTTGTTATGCATCAGA+GGG | 0.575473 | 3.2:-77738215 | None:intergenic |
ATAACACTAGTAGTGTTGTT+GGG | 0.575929 | 3.2:+77736557 | MS.gene057219:CDS |
AACAAACTTGGAATGACCAA+TGG | 0.577256 | 3.2:+77738231 | MS.gene057219:CDS |
TAGTCATCATCAAATCAAAA+GGG | 0.580379 | 3.2:+77737567 | MS.gene057219:CDS |
CATGATTATCAAAGAATGAA+CGG | 0.581245 | 3.2:-77736648 | None:intergenic |
TCCTGAATTAGAAGCGCCAA+GGG | 0.582031 | 3.2:-77738187 | None:intergenic |
AGTTTGTTGTTATGCATCAG+AGG | 0.584443 | 3.2:-77738216 | None:intergenic |
GTGTTGAACCTACCCAAGGT+TGG | 0.586263 | 3.2:-77738638 | None:intergenic |
TGCAGAACCATTGTTGGAGG+TGG | 0.586637 | 3.2:-77738472 | None:intergenic |
GAGTTTGCATTGGAACAACA+AGG | 0.591725 | 3.2:-77738362 | None:intergenic |
ATACTGATCCAGAGGCTGGT+AGG | 0.593096 | 3.2:+77737401 | MS.gene057219:CDS |
ACACGATTTGTTGTTGTGAG+AGG | 0.596043 | 3.2:-77738741 | None:intergenic |
TTGGCGCTTCTAATTCAGGA+TGG | 0.599912 | 3.2:+77738190 | MS.gene057219:CDS |
TGGAAATGAATTCAGATACT+GGG | 0.603286 | 3.2:-77738280 | None:intergenic |
TGCCACTTCAGGAACAGGAA+TGG | 0.604108 | 3.2:+77738773 | MS.gene057219:CDS |
ACAAGGGGATTAAGTAAGAG+AGG | 0.605379 | 3.2:-77738345 | None:intergenic |
GTTTGCATTGGAACAACAAG+GGG | 0.608134 | 3.2:-77738360 | None:intergenic |
CCTTGGGTAGGTTCAACACC+TGG | 0.608292 | 3.2:+77738642 | MS.gene057219:CDS |
ATCCTGAATTAGAAGCGCCA+AGG | 0.609515 | 3.2:-77738188 | None:intergenic |
TCCCCGTTCAAGAAAGCCTG+TGG | 0.619148 | 3.2:+77737513 | MS.gene057219:CDS |
GGTAGGTGCAGAAGAACAGA+TGG | 0.619651 | 3.2:+77737418 | MS.gene057219:CDS |
GGTCACAGCAGGTGGAATGG+CGG | 0.620189 | 3.2:+77736972 | MS.gene057219:intron |
TCCAAATGTTGCATCATCAA+GGG | 0.620644 | 3.2:+77738866 | MS.gene057219:CDS |
CTCCAATCTGAGAAACCAAG+AGG | 0.625201 | 3.2:+77738384 | MS.gene057219:CDS |
GAATGAAAAGGGGCTTGGAG+TGG | 0.630089 | 3.2:+77738142 | MS.gene057219:intron |
ACTTCAGCTAGTGGACCACC+AGG | 0.635831 | 3.2:-77738660 | None:intergenic |
TCCACAGGCTTTCTTGAACG+GGG | 0.635923 | 3.2:-77737514 | None:intergenic |
AGGCTTCAAATAAGCAACCA+AGG | 0.637520 | 3.2:+77737752 | MS.gene057219:CDS |
AATCCAGCCCAACCTTGGGT+AGG | 0.638869 | 3.2:+77738630 | MS.gene057219:CDS |
TAGGAACAATACTGATCCAG+AGG | 0.641405 | 3.2:+77737393 | MS.gene057219:CDS |
TGATGCAGAACCATTGTTGG+AGG | 0.644016 | 3.2:-77738475 | None:intergenic |
CATTGAGCAATTGTGAAAGG+AGG | 0.644246 | 3.2:-77737015 | None:intergenic |
AGTTTGCATTGGAACAACAA+GGG | 0.661506 | 3.2:-77738361 | None:intergenic |
CCAGGTGTTGAACCTACCCA+AGG | 0.666817 | 3.2:-77738642 | None:intergenic |
TCACTTGATCTATCAATGGG+AGG | 0.680795 | 3.2:+77738519 | MS.gene057219:CDS |
TTGGTCTAATGCAGAGACAG+TGG | 0.682367 | 3.2:+77738425 | MS.gene057219:CDS |
TGGGTAGGTTCAACACCTGG+TGG | 0.687244 | 3.2:+77738645 | MS.gene057219:CDS |
TGTGAAAGACATATGCATAG+AGG | 0.723539 | 3.2:+77737487 | MS.gene057219:CDS |
GATTATCAAAGAATGAACGG+TGG | 0.727234 | 3.2:-77736645 | None:intergenic |
AATGCTATCATTGATAATGG+CGG | 0.749635 | 3.2:+77736766 | MS.gene057219:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAAATATGAAATTAATTA+AGG | - | chr3.2:77737146-77737165 | None:intergenic | 10.0% |
!! | ATATATAGAAAAATAAGTAG+TGG | + | chr3.2:77736880-77736899 | MS.gene057219:intron | 15.0% |
!!! | AAAAAAAATCAAGCTTTATT+TGG | - | chr3.2:77738032-77738051 | None:intergenic | 15.0% |
!!! | TAAATAAATGCATTGTTTTA+TGG | + | chr3.2:77738072-77738091 | MS.gene057219:intron | 15.0% |
!! | AAAAAAGCAGAAAAAGTTAA+TGG | - | chr3.2:77737195-77737214 | None:intergenic | 20.0% |
!! | AAAAAGCAGAAAAAGTTAAT+GGG | - | chr3.2:77737194-77737213 | None:intergenic | 20.0% |
!! | ATGAAAAGGTTGAAAATTTA+AGG | - | chr3.2:77736797-77736816 | None:intergenic | 20.0% |
!! | ATGATTAAACTTATTGAGTA+AGG | - | chr3.2:77738907-77738926 | None:intergenic | 20.0% |
!!! | TTTCATGTTTTGTTTTGATT+TGG | + | chr3.2:77737996-77738015 | MS.gene057219:intron | 20.0% |
!!! | TTTCTAGTTTGTTATTGATT+TGG | + | chr3.2:77738113-77738132 | MS.gene057219:intron | 20.0% |
! | AAACACAAACTAACCTTTAA+GGG | - | chr3.2:77736842-77736861 | None:intergenic | 25.0% |
! | AAGGTAAATAGAATGAAAAG+TGG | - | chr3.2:77737251-77737270 | None:intergenic | 25.0% |
! | AATCCAACTACAAGAAAATA+TGG | + | chr3.2:77737649-77737668 | MS.gene057219:CDS | 25.0% |
! | ACAAAACATGAAAGTGAATA+AGG | - | chr3.2:77737989-77738008 | None:intergenic | 25.0% |
! | ATAGTCATCATCAAATCAAA+AGG | + | chr3.2:77737566-77737585 | MS.gene057219:CDS | 25.0% |
! | ATATTGAGTTTGACTAAATC+AGG | + | chr3.2:77737828-77737847 | MS.gene057219:intron | 25.0% |
! | CATGATTATCAAAGAATGAA+CGG | - | chr3.2:77736651-77736670 | None:intergenic | 25.0% |
! | TAAACACAAACTAACCTTTA+AGG | - | chr3.2:77736843-77736862 | None:intergenic | 25.0% |
! | TAGTCATCATCAAATCAAAA+GGG | + | chr3.2:77737567-77737586 | MS.gene057219:CDS | 25.0% |
! | TATGATTTACAAGTACTTGA+TGG | + | chr3.2:77737059-77737078 | MS.gene057219:CDS | 25.0% |
! | TATGCAAAGAAAATGAAGAT+TGG | - | chr3.2:77737720-77737739 | None:intergenic | 25.0% |
! | TTTAAGAGTGAATTTCATAG+AGG | - | chr3.2:77738056-77738075 | None:intergenic | 25.0% |
! | TTTGGTGAATTGAATGAAAA+GGG | + | chr3.2:77738131-77738150 | MS.gene057219:intron | 25.0% |
!! | ATTTGGTGAATTGAATGAAA+AGG | + | chr3.2:77738130-77738149 | MS.gene057219:intron | 25.0% |
!! | TATTTTCTTGTAGTTGGATT+AGG | - | chr3.2:77737649-77737668 | None:intergenic | 25.0% |
!!! | GTTTTATGGTGTTAGTATTA+TGG | + | chr3.2:77738086-77738105 | MS.gene057219:intron | 25.0% |
!!! | TACAAACTTTTGACTCAAAA+TGG | - | chr3.2:77737222-77737241 | None:intergenic | 25.0% |
!!! | TGTCTTTGTTTGTTTTGATT+TGG | + | chr3.2:77737958-77737977 | MS.gene057219:intron | 25.0% |
!!! | TTGTTGTTGGTTTTTTTTGT+AGG | - | chr3.2:77736538-77736557 | None:intergenic | 25.0% |
AAAAGACATGTTGTATGTTG+TGG | - | chr3.2:77736719-77736738 | None:intergenic | 30.0% | |
AAAGACATGTTGTATGTTGT+GGG | - | chr3.2:77736718-77736737 | None:intergenic | 30.0% | |
AAAGCAACACATGATGAAAA+AGG | - | chr3.2:77737296-77737315 | None:intergenic | 30.0% | |
AATAACACTAGTAGTGTTGT+TGG | + | chr3.2:77736556-77736575 | MS.gene057219:CDS | 30.0% | |
ACAAAGACATAGTACATGTT+TGG | - | chr3.2:77737947-77737966 | None:intergenic | 30.0% | |
AGTTCAGAACTGTTATATAG+TGG | - | chr3.2:77738303-77738322 | None:intergenic | 30.0% | |
ATACAGATATAAACTCACCT+TGG | - | chr3.2:77737772-77737791 | None:intergenic | 30.0% | |
ATACATGAAAGAAGATGAGA+AGG | - | chr3.2:77737099-77737118 | None:intergenic | 30.0% | |
ATTATGATAGGAACTTCCAT+TGG | - | chr3.2:77738250-77738269 | None:intergenic | 30.0% | |
CTAAAATAGCATTCTCAAGT+TGG | + | chr3.2:77738604-77738623 | MS.gene057219:CDS | 30.0% | |
GAAAATGAAGATTGGAGATA+AGG | - | chr3.2:77737712-77737731 | None:intergenic | 30.0% | |
GAAGAACAGATGGTAAAAAA+TGG | + | chr3.2:77737428-77737447 | MS.gene057219:CDS | 30.0% | |
GAAGCAGAAATGTTATGAAA+AGG | - | chr3.2:77736811-77736830 | None:intergenic | 30.0% | |
GCTAATGCTATCATTGATAA+TGG | + | chr3.2:77736763-77736782 | MS.gene057219:CDS | 30.0% | |
TCAATGAAACTAAAACCTCT+TGG | - | chr3.2:77738402-77738421 | None:intergenic | 30.0% | |
TCATCACTTGATCTATCAAT+GGG | + | chr3.2:77738516-77738535 | MS.gene057219:CDS | 30.0% | |
TGATAGATCAAGTGATGAAA+GGG | - | chr3.2:77738514-77738533 | None:intergenic | 30.0% | |
TGGAAATGAATTCAGATACT+GGG | - | chr3.2:77738283-77738302 | None:intergenic | 30.0% | |
TTATTATGCAAAACACCAGA+TGG | - | chr3.2:77738807-77738826 | None:intergenic | 30.0% | |
TTCATCACTTGATCTATCAA+TGG | + | chr3.2:77738515-77738534 | MS.gene057219:CDS | 30.0% | |
TTGATAGATCAAGTGATGAA+AGG | - | chr3.2:77738515-77738534 | None:intergenic | 30.0% | |
TTGGTGAATTGAATGAAAAG+GGG | + | chr3.2:77738132-77738151 | MS.gene057219:intron | 30.0% | |
TTTGTCATTGAATCAATGTG+TGG | + | chr3.2:77737270-77737289 | MS.gene057219:intron | 30.0% | |
! | AACATACAACATGTCTTTTG+GGG | + | chr3.2:77736720-77736739 | MS.gene057219:CDS | 30.0% |
! | ACAACATACAACATGTCTTT+TGG | + | chr3.2:77736718-77736737 | MS.gene057219:CDS | 30.0% |
! | ACTACTAGTGTTATTGTTGT+TGG | - | chr3.2:77736551-77736570 | None:intergenic | 30.0% |
! | ATAACACTAGTAGTGTTGTT+GGG | + | chr3.2:77736557-77736576 | MS.gene057219:CDS | 30.0% |
! | CAACATACAACATGTCTTTT+GGG | + | chr3.2:77736719-77736738 | MS.gene057219:CDS | 30.0% |
! | GATCCATATTTTCTTGTAGT+TGG | - | chr3.2:77737655-77737674 | None:intergenic | 30.0% |
! | GGATTCAGTGTTATTATGAT+AGG | - | chr3.2:77738262-77738281 | None:intergenic | 30.0% |
! | TCAATTTGAGGCTATCAAAT+AGG | + | chr3.2:77737374-77737393 | MS.gene057219:CDS | 30.0% |
!! | AATGCTATCATTGATAATGG+CGG | + | chr3.2:77736766-77736785 | MS.gene057219:CDS | 30.0% |
!! | CACATTGATTCAATGACAAA+AGG | - | chr3.2:77737270-77737289 | None:intergenic | 30.0% |
!! | CTTTCACAGTACTTGTTATT+AGG | - | chr3.2:77737475-77737494 | None:intergenic | 30.0% |
!!! | ACTTGTGTTTTTTGTGTTTG+TGG | + | chr3.2:77736948-77736967 | MS.gene057219:intron | 30.0% |
!!! | GTTTTAGTTTCATTGATGCT+TGG | + | chr3.2:77738406-77738425 | MS.gene057219:CDS | 30.0% |
AACAAACTTGGAATGACCAA+TGG | + | chr3.2:77738231-77738250 | MS.gene057219:CDS | 35.0% | |
AAGATTGGAGATAAGGATGA+AGG | - | chr3.2:77737705-77737724 | None:intergenic | 35.0% | |
AGATTGGAGATAAGGATGAA+GGG | - | chr3.2:77737704-77737723 | None:intergenic | 35.0% | |
AGTTTGCATTGGAACAACAA+GGG | - | chr3.2:77738364-77738383 | None:intergenic | 35.0% | |
CTGATGCATAACAACAAACT+TGG | + | chr3.2:77738219-77738238 | MS.gene057219:CDS | 35.0% | |
GATTATCAAAGAATGAACGG+TGG | - | chr3.2:77736648-77736667 | None:intergenic | 35.0% | |
GGATTAAGTAAGAGAGGAAA+GGG | - | chr3.2:77738342-77738361 | None:intergenic | 35.0% | |
GTGGAAATGAATTCAGATAC+TGG | - | chr3.2:77738284-77738303 | None:intergenic | 35.0% | |
TCCAAATGTTGCATCATCAA+GGG | + | chr3.2:77738866-77738885 | MS.gene057219:CDS | 35.0% | |
TGTGAAAGACATATGCATAG+AGG | + | chr3.2:77737487-77737506 | MS.gene057219:CDS | 35.0% | |
TTAGAAGATCCAAGCCTTAA+GGG | - | chr3.2:77737877-77737896 | None:intergenic | 35.0% | |
TTATTTGTGTGAAGTTCCAC+AGG | - | chr3.2:77737532-77737551 | None:intergenic | 35.0% | |
TTTGCATAATAGCAGCTTTG+AGG | + | chr3.2:77737732-77737751 | MS.gene057219:CDS | 35.0% | |
! | ACATACAACATGTCTTTTGG+GGG | + | chr3.2:77736721-77736740 | MS.gene057219:CDS | 35.0% |
! | TGATTTTGCTGAATCCCTTA+AGG | + | chr3.2:77737860-77737879 | MS.gene057219:intron | 35.0% |
! | TTTCTTGTAGTTGGATTAGG+AGG | - | chr3.2:77737646-77737665 | None:intergenic | 35.0% |
!! | AGTTTGTTGTTATGCATCAG+AGG | - | chr3.2:77738219-77738238 | None:intergenic | 35.0% |
!! | GTTTGTTGTTATGCATCAGA+GGG | - | chr3.2:77738218-77738237 | None:intergenic | 35.0% |
!!! | TATCCTTGTTTTTGAAGCAG+TGG | + | chr3.2:77737342-77737361 | MS.gene057219:intron | 35.0% |
!!! | TGTGTTTTTTGTGTTTGTGG+TGG | + | chr3.2:77736951-77736970 | MS.gene057219:intron | 35.0% |
AACCTCTTGGTTTCTCAGAT+TGG | - | chr3.2:77738389-77738408 | None:intergenic | 40.0% | |
AACTGATGCAGAACCATTGT+TGG | - | chr3.2:77738481-77738500 | None:intergenic | 40.0% | |
AATGGAGATCCAATTTCCCT+TGG | + | chr3.2:77738171-77738190 | MS.gene057219:CDS | 40.0% | |
ACAAGGGGATTAAGTAAGAG+AGG | - | chr3.2:77738348-77738367 | None:intergenic | 40.0% | |
AGGCTTCAAATAAGCAACCA+AGG | + | chr3.2:77737752-77737771 | MS.gene057219:CDS | 40.0% | |
CATCCACTGCTTCAAAAACA+AGG | - | chr3.2:77737348-77737367 | None:intergenic | 40.0% | |
CATTGAGCAATTGTGAAAGG+AGG | - | chr3.2:77737018-77737037 | None:intergenic | 40.0% | |
CTCCATTGAGCAATTGTGAA+AGG | - | chr3.2:77737021-77737040 | None:intergenic | 40.0% | |
CTCCTTTCACAATTGCTCAA+TGG | + | chr3.2:77737016-77737035 | MS.gene057219:CDS | 40.0% | |
CTTAGAAGATCCAAGCCTTA+AGG | - | chr3.2:77737878-77737897 | None:intergenic | 40.0% | |
GAAAGAAGATGAGAAGGAAC+AGG | - | chr3.2:77737093-77737112 | None:intergenic | 40.0% | |
GAATTGAATGAAAAGGGGCT+TGG | + | chr3.2:77738137-77738156 | MS.gene057219:intron | 40.0% | |
GAGTTTGCATTGGAACAACA+AGG | - | chr3.2:77738365-77738384 | None:intergenic | 40.0% | |
GATTGGAGATAAGGATGAAG+GGG | - | chr3.2:77737703-77737722 | None:intergenic | 40.0% | |
GCTTCAGTTTCTGATAGTAG+TGG | + | chr3.2:77738834-77738853 | MS.gene057219:CDS | 40.0% | |
GGGATTAAGTAAGAGAGGAA+AGG | - | chr3.2:77738343-77738362 | None:intergenic | 40.0% | |
GGGATTCAGCAAAATCACAA+TGG | - | chr3.2:77737857-77737876 | None:intergenic | 40.0% | |
GTCCAAATGTTGCATCATCA+AGG | + | chr3.2:77738865-77738884 | MS.gene057219:CDS | 40.0% | |
GTTTGCATTGGAACAACAAG+GGG | - | chr3.2:77738363-77738382 | None:intergenic | 40.0% | |
TAGGAACAATACTGATCCAG+AGG | + | chr3.2:77737393-77737412 | MS.gene057219:CDS | 40.0% | |
TCACTTGATCTATCAATGGG+AGG | + | chr3.2:77738519-77738538 | MS.gene057219:CDS | 40.0% | |
TCAGATTGGAGAGTTTGCAT+TGG | - | chr3.2:77738375-77738394 | None:intergenic | 40.0% | |
! | AACAATGGTTCTGCATCAGT+TGG | + | chr3.2:77738480-77738499 | MS.gene057219:CDS | 40.0% |
! | CTAACCTTTAAGGGTTGTGT+TGG | - | chr3.2:77736833-77736852 | None:intergenic | 40.0% |
! | TGGATGGTGGTTTCAATTTG+AGG | + | chr3.2:77737362-77737381 | MS.gene057219:CDS | 40.0% |
! | TTCTCTGCCTGATTTTACTG+TGG | + | chr3.2:77737615-77737634 | MS.gene057219:CDS | 40.0% |
!! | ACACGATTTGTTGTTGTGAG+AGG | - | chr3.2:77738744-77738763 | None:intergenic | 40.0% |
!! | AGAATTTGTTGCATCACTGC+TGG | - | chr3.2:77738709-77738728 | None:intergenic | 40.0% |
!!! | CTTGTTTTTGAAGCAGTGGA+TGG | + | chr3.2:77737346-77737365 | MS.gene057219:intron | 40.0% |
AACAATACTGATCCAGAGGC+TGG | + | chr3.2:77737397-77737416 | MS.gene057219:CDS | 45.0% | |
ATGGCGGCTTCAATAGGAAT+AGG | + | chr3.2:77736988-77737007 | MS.gene057219:CDS | 45.0% | |
CTCCAATCTGAGAAACCAAG+AGG | + | chr3.2:77738384-77738403 | MS.gene057219:CDS | 45.0% | |
CTGCTGGAAGTAACATTGCT+TGG | - | chr3.2:77738693-77738712 | None:intergenic | 45.0% | |
GCTGTTGATGCTGATGGTTA+TGG | + | chr3.2:77736691-77736710 | MS.gene057219:CDS | 45.0% | |
GCTTCCAACACAACCCTTAA+AGG | + | chr3.2:77736826-77736845 | MS.gene057219:CDS | 45.0% | |
GGAACAGCCACAGTAAAATC+AGG | - | chr3.2:77737625-77737644 | None:intergenic | 45.0% | |
GGAATGGTATCATCTCCATC+TGG | + | chr3.2:77738789-77738808 | MS.gene057219:CDS | 45.0% | |
GTCCACTAGCTGAAGTTCTA+AGG | + | chr3.2:77738667-77738686 | MS.gene057219:CDS | 45.0% | |
GTTCCACAGGCTTTCTTGAA+CGG | - | chr3.2:77737519-77737538 | None:intergenic | 45.0% | |
TACCATTCCTGTTCCTGAAG+TGG | - | chr3.2:77738778-77738797 | None:intergenic | 45.0% | |
TGAGTTTCGCGTTCAAGACA+AGG | + | chr3.2:77736510-77736529 | MS.gene057219:CDS | 45.0% | |
TGATGCAGAACCATTGTTGG+AGG | - | chr3.2:77738478-77738497 | None:intergenic | 45.0% | |
TGGCGGCTTCAATAGGAATA+GGG | + | chr3.2:77736989-77737008 | MS.gene057219:CDS | 45.0% | |
TGTTGAACCTACCCAAGGTT+GGG | - | chr3.2:77738640-77738659 | None:intergenic | 45.0% | |
TTCCACAGGCTTTCTTGAAC+GGG | - | chr3.2:77737518-77737537 | None:intergenic | 45.0% | |
TTGCTGAATCCCTTAAGGCT+TGG | + | chr3.2:77737865-77737884 | MS.gene057219:intron | 45.0% | |
TTGGCGCTTCTAATTCAGGA+TGG | + | chr3.2:77738190-77738209 | MS.gene057219:CDS | 45.0% | |
TTGGTCTAATGCAGAGACAG+TGG | + | chr3.2:77738425-77738444 | MS.gene057219:CDS | 45.0% | |
! | CACTAGTAGTGTTGTTGGGT+CGG | + | chr3.2:77736561-77736580 | MS.gene057219:CDS | 45.0% |
!! | ATCCTGAATTAGAAGCGCCA+AGG | - | chr3.2:77738191-77738210 | None:intergenic | 45.0% |
!! | GCCCTTGATGATGCAACATT+TGG | - | chr3.2:77738870-77738889 | None:intergenic | 45.0% |
!! | TCCTGAATTAGAAGCGCCAA+GGG | - | chr3.2:77738190-77738209 | None:intergenic | 45.0% |
!! | TTAGAAGCGCCAAGGGAAAT+TGG | - | chr3.2:77738183-77738202 | None:intergenic | 45.0% |
!!! | GTTTTTGAAGCAGTGGATGG+TGG | + | chr3.2:77737349-77737368 | MS.gene057219:intron | 45.0% |
AGAACCATTGTTGGAGGTGG+TGG | - | chr3.2:77738472-77738491 | None:intergenic | 50.0% | |
ATACTGATCCAGAGGCTGGT+AGG | + | chr3.2:77737401-77737420 | MS.gene057219:CDS | 50.0% | |
GAATGAAAAGGGGCTTGGAG+TGG | + | chr3.2:77738142-77738161 | MS.gene057219:intron | 50.0% | |
GAGATAAGGATGAAGGGGAG+TGG | - | chr3.2:77737698-77737717 | None:intergenic | 50.0% | |
GGCCTTAGAACTTCAGCTAG+TGG | - | chr3.2:77738672-77738691 | None:intergenic | 50.0% | |
GGTAGGTGCAGAAGAACAGA+TGG | + | chr3.2:77737418-77737437 | MS.gene057219:CDS | 50.0% | |
GTGTTGAACCTACCCAAGGT+TGG | - | chr3.2:77738641-77738660 | None:intergenic | 50.0% | |
TCCACAGGCTTTCTTGAACG+GGG | - | chr3.2:77737517-77737536 | None:intergenic | 50.0% | |
TCCCTTGGCGCTTCTAATTC+AGG | + | chr3.2:77738186-77738205 | MS.gene057219:CDS | 50.0% | |
TCCTGTTCCTGAAGTGGCAA+TGG | - | chr3.2:77738772-77738791 | None:intergenic | 50.0% | |
TCTGCTGCTGTTGATGCTGA+TGG | + | chr3.2:77736685-77736704 | MS.gene057219:CDS | 50.0% | |
TGCAGAACCATTGTTGGAGG+TGG | - | chr3.2:77738475-77738494 | None:intergenic | 50.0% | |
! | GTCGAATCCATTGCCACTTC+AGG | + | chr3.2:77738762-77738781 | MS.gene057219:CDS | 50.0% |
! | TCCATTGCCACTTCAGGAAC+AGG | + | chr3.2:77738768-77738787 | MS.gene057219:CDS | 50.0% |
! | TGCCACTTCAGGAACAGGAA+TGG | + | chr3.2:77738773-77738792 | MS.gene057219:CDS | 50.0% |
AATCCAGCCCAACCTTGGGT+AGG | + | chr3.2:77738630-77738649 | MS.gene057219:CDS | 55.0% | |
ACCACCACCACCTCCAACAA+TGG | + | chr3.2:77738465-77738484 | MS.gene057219:CDS | 55.0% | |
CCTTGGGTAGGTTCAACACC+TGG | + | chr3.2:77738642-77738661 | MS.gene057219:CDS | 55.0% | |
GCTCAATCCAGCCCAACCTT+GGG | + | chr3.2:77738626-77738645 | MS.gene057219:CDS | 55.0% | |
GGCTTGGAGTGGATGCTGAA+TGG | + | chr3.2:77738153-77738172 | MS.gene057219:CDS | 55.0% | |
GGGGGTGATTCTTCTGCTCT+AGG | + | chr3.2:77736739-77736758 | MS.gene057219:CDS | 55.0% | |
GGTGGAATGGCGGCTTCAAT+AGG | + | chr3.2:77736982-77737001 | MS.gene057219:CDS | 55.0% | |
GTGTTTGTGGTGGTCACAGC+AGG | + | chr3.2:77736961-77736980 | MS.gene057219:intron | 55.0% | |
TCCCCGTTCAAGAAAGCCTG+TGG | + | chr3.2:77737513-77737532 | MS.gene057219:CDS | 55.0% | |
TGGGTAGGTTCAACACCTGG+TGG | + | chr3.2:77738645-77738664 | MS.gene057219:CDS | 55.0% | |
TTTGTGGTGGTCACAGCAGG+TGG | + | chr3.2:77736964-77736983 | MS.gene057219:intron | 55.0% | |
! | ACCATTGTTGGAGGTGGTGG+TGG | - | chr3.2:77738469-77738488 | None:intergenic | 55.0% |
! | ACTTCAGCTAGTGGACCACC+AGG | - | chr3.2:77738663-77738682 | None:intergenic | 55.0% |
!! | ATTGTTGGAGGTGGTGGTGG+TGG | - | chr3.2:77738466-77738485 | None:intergenic | 55.0% |
!! | CCAGGTGTTGAACCTACCCA+AGG | - | chr3.2:77738645-77738664 | None:intergenic | 55.0% |
!! | GGGTCGGTGCAGAGTTTTGA+AGG | + | chr3.2:77736577-77736596 | MS.gene057219:CDS | 55.0% |
CTTCTGCACCTACCAGCCTC+TGG | - | chr3.2:77737412-77737431 | None:intergenic | 60.0% | |
GAACCTACCCAAGGTTGGGC+TGG | - | chr3.2:77738636-77738655 | None:intergenic | 60.0% | |
GGCTCAATCCAGCCCAACCT+TGG | + | chr3.2:77738625-77738644 | MS.gene057219:CDS | 60.0% | |
GGTCACAGCAGGTGGAATGG+CGG | + | chr3.2:77736972-77736991 | MS.gene057219:intron | 60.0% | |
GGTGGTCACAGCAGGTGGAA+TGG | + | chr3.2:77736969-77736988 | MS.gene057219:intron | 60.0% | |
!! | GGAGGTGGTGGTGGTGGTGT+TGG | - | chr3.2:77738460-77738479 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 77736505 | 77738944 | 77736505 | ID=MS.gene057219 |
chr3.2 | mRNA | 77736505 | 77738944 | 77736505 | ID=MS.gene057219.t1;Parent=MS.gene057219 |
chr3.2 | exon | 77736505 | 77736847 | 77736505 | ID=MS.gene057219.t1.exon1;Parent=MS.gene057219.t1 |
chr3.2 | CDS | 77736505 | 77736847 | 77736505 | ID=cds.MS.gene057219.t1;Parent=MS.gene057219.t1 |
chr3.2 | exon | 77736980 | 77737114 | 77736980 | ID=MS.gene057219.t1.exon2;Parent=MS.gene057219.t1 |
chr3.2 | CDS | 77736980 | 77737114 | 77736980 | ID=cds.MS.gene057219.t1;Parent=MS.gene057219.t1 |
chr3.2 | exon | 77737362 | 77737773 | 77737362 | ID=MS.gene057219.t1.exon3;Parent=MS.gene057219.t1 |
chr3.2 | CDS | 77737362 | 77737773 | 77737362 | ID=cds.MS.gene057219.t1;Parent=MS.gene057219.t1 |
chr3.2 | exon | 77738152 | 77738944 | 77738152 | ID=MS.gene057219.t1.exon4;Parent=MS.gene057219.t1 |
chr3.2 | CDS | 77738152 | 77738944 | 77738152 | ID=cds.MS.gene057219.t1;Parent=MS.gene057219.t1 |
Gene Sequence |
Protein sequence |