AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057219


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057219.t1 MTR_3g092330 91.429 560 28 7 1 560 1 540 0.0 929
MS.gene057219.t1 MTR_1g017490 52.632 133 37 3 110 218 126 256 1.49e-33 135
MS.gene057219.t1 MTR_1g017490 54.331 127 28 4 116 218 3 123 4.42e-33 133
MS.gene057219.t1 MTR_0001s0490 53.153 111 35 2 128 221 25 135 3.13e-32 127
MS.gene057219.t1 MTR_5g027030 57.000 100 35 2 126 218 14 112 6.22e-30 120
MS.gene057219.t1 MTR_8g020560 50.450 111 33 3 129 219 12 120 1.76e-29 119
MS.gene057219.t1 MTR_2g041430 50.000 114 35 3 128 219 7 120 3.48e-29 119
MS.gene057219.t1 MTR_2g041430 50.000 114 35 3 128 219 7 120 4.44e-29 118
MS.gene057219.t1 MTR_2g041430 50.000 114 35 3 128 219 7 120 4.57e-29 118
MS.gene057219.t1 MTR_7g104050 44.604 139 50 3 109 225 60 193 9.41e-29 117
MS.gene057219.t1 MTR_4g125490 49.153 118 42 3 128 227 9 126 1.00e-28 119
MS.gene057219.t1 MTR_7g104050 44.604 139 50 3 109 225 60 193 1.26e-28 118
MS.gene057219.t1 MTR_8g035910 46.218 119 51 3 127 233 48 165 3.45e-23 102
MS.gene057219.t1 MTR_8g035910 56.667 60 25 1 154 212 276 335 7.89e-14 73.9
MS.gene057219.t1 MTR_8g035640 52.542 59 27 1 155 212 31 89 1.71e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057219.t1 AT4G37740 54.701 117 35 3 128 227 164 279 3.62e-33 133
MS.gene057219.t1 AT5G53660 56.140 114 46 2 126 235 57 170 1.31e-32 129
MS.gene057219.t1 AT2G22840 54.310 116 35 2 128 226 133 247 2.83e-31 128
MS.gene057219.t1 AT3G13960 51.327 113 37 2 124 218 12 124 6.71e-30 122
MS.gene057219.t1 AT4G24150 41.718 163 64 5 102 242 90 243 3.98e-29 120
MS.gene057219.t1 AT4G24150 41.718 163 64 5 102 242 128 281 7.85e-29 120
MS.gene057219.t1 AT2G36400 52.137 117 35 1 129 224 77 193 1.82e-28 117
MS.gene057219.t1 AT3G52910 49.107 112 35 1 129 218 83 194 2.54e-26 111
MS.gene057219.t1 AT2G06200 42.759 145 48 5 102 216 23 162 1.36e-25 107
MS.gene057219.t1 AT4G24150 36.170 188 64 5 102 242 128 306 1.50e-25 110
MS.gene057219.t1 AT2G06200 46.610 118 34 3 128 216 6 123 2.17e-25 105
MS.gene057219.t1 AT2G45480 44.444 108 42 2 126 215 22 129 7.99e-19 87.8
MS.gene057219.t1 AT2G45480 44.444 108 42 2 126 215 22 129 4.36e-18 87.4
MS.gene057219.t1 AT2G45480 50.000 74 32 3 154 227 289 357 2.35e-13 72.8
MS.gene057219.t1 AT2G45480 44.444 108 42 2 126 215 20 127 4.42e-18 87.4
MS.gene057219.t1 AT2G45480 50.000 74 32 3 154 227 287 355 2.39e-13 72.8
MS.gene057219.t1 AT2G06200 72.727 44 10 1 175 216 8 51 6.88e-16 76.3

Find 128 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAAGGTTGAAAATTTA+AGG 0.123717 3.2:-77736794 None:intergenic
TAAACACAAACTAACCTTTA+AGG 0.146408 3.2:-77736840 None:intergenic
GCTTCCAACACAACCCTTAA+AGG 0.155280 3.2:+77736826 MS.gene057219:CDS
TCCCTTGGCGCTTCTAATTC+AGG 0.215472 3.2:+77738186 MS.gene057219:CDS
CTTTCACAGTACTTGTTATT+AGG 0.229946 3.2:-77737472 None:intergenic
TCAATTTGAGGCTATCAAAT+AGG 0.264552 3.2:+77737374 MS.gene057219:CDS
ACAACATACAACATGTCTTT+TGG 0.266442 3.2:+77736718 MS.gene057219:CDS
AATCCAACTACAAGAAAATA+TGG 0.279540 3.2:+77737649 MS.gene057219:CDS
TTAGAAGCGCCAAGGGAAAT+TGG 0.295713 3.2:-77738180 None:intergenic
AACCTCTTGGTTTCTCAGAT+TGG 0.311180 3.2:-77738386 None:intergenic
GCCCTTGATGATGCAACATT+TGG 0.323926 3.2:-77738867 None:intergenic
TATGATTTACAAGTACTTGA+TGG 0.325776 3.2:+77737059 MS.gene057219:CDS
GTCGAATCCATTGCCACTTC+AGG 0.358075 3.2:+77738762 MS.gene057219:CDS
GTGGAAATGAATTCAGATAC+TGG 0.360987 3.2:-77738281 None:intergenic
AAACACAAACTAACCTTTAA+GGG 0.361293 3.2:-77736839 None:intergenic
ACTACTAGTGTTATTGTTGT+TGG 0.363306 3.2:-77736548 None:intergenic
TTCCACAGGCTTTCTTGAAC+GGG 0.370446 3.2:-77737515 None:intergenic
GTCCACTAGCTGAAGTTCTA+AGG 0.379508 3.2:+77738667 MS.gene057219:CDS
ATGATTAAACTTATTGAGTA+AGG 0.386331 3.2:-77738904 None:intergenic
GCTAATGCTATCATTGATAA+TGG 0.393717 3.2:+77736763 MS.gene057219:CDS
ATGGCGGCTTCAATAGGAAT+AGG 0.401179 3.2:+77736988 MS.gene057219:CDS
TCCATTGCCACTTCAGGAAC+AGG 0.402246 3.2:+77738768 MS.gene057219:CDS
GCTGTTGATGCTGATGGTTA+TGG 0.403679 3.2:+77736691 MS.gene057219:CDS
TTCATCACTTGATCTATCAA+TGG 0.407184 3.2:+77738515 MS.gene057219:CDS
GGATTCAGTGTTATTATGAT+AGG 0.409147 3.2:-77738259 None:intergenic
ATAGTCATCATCAAATCAAA+AGG 0.419333 3.2:+77737566 MS.gene057219:CDS
TTTGCATAATAGCAGCTTTG+AGG 0.429903 3.2:+77737732 MS.gene057219:CDS
CTTCTGCACCTACCAGCCTC+TGG 0.433695 3.2:-77737409 None:intergenic
GGTGGAATGGCGGCTTCAAT+AGG 0.433909 3.2:+77736982 MS.gene057219:CDS
ACCATTGTTGGAGGTGGTGG+TGG 0.435162 3.2:-77738466 None:intergenic
GAAAATGAAGATTGGAGATA+AGG 0.436913 3.2:-77737709 None:intergenic
TGGATGGTGGTTTCAATTTG+AGG 0.446579 3.2:+77737362 MS.gene057219:CDS
CTCCTTTCACAATTGCTCAA+TGG 0.446940 3.2:+77737016 MS.gene057219:CDS
GGCTCAATCCAGCCCAACCT+TGG 0.448375 3.2:+77738625 MS.gene057219:CDS
GGATTAAGTAAGAGAGGAAA+GGG 0.448727 3.2:-77738339 None:intergenic
TCTGCTGCTGTTGATGCTGA+TGG 0.451525 3.2:+77736685 MS.gene057219:CDS
GAAGCAGAAATGTTATGAAA+AGG 0.454915 3.2:-77736808 None:intergenic
ATTGTTGGAGGTGGTGGTGG+TGG 0.456677 3.2:-77738463 None:intergenic
CTGATGCATAACAACAAACT+TGG 0.457493 3.2:+77738219 MS.gene057219:CDS
TATGCAAAGAAAATGAAGAT+TGG 0.460286 3.2:-77737717 None:intergenic
AACTGATGCAGAACCATTGT+TGG 0.462885 3.2:-77738478 None:intergenic
GAAAGAAGATGAGAAGGAAC+AGG 0.467897 3.2:-77737090 None:intergenic
TCATCACTTGATCTATCAAT+GGG 0.468999 3.2:+77738516 MS.gene057219:CDS
AGAATTTGTTGCATCACTGC+TGG 0.475974 3.2:-77738706 None:intergenic
GAACCTACCCAAGGTTGGGC+TGG 0.475979 3.2:-77738633 None:intergenic
AAGATTGGAGATAAGGATGA+AGG 0.477847 3.2:-77737702 None:intergenic
CTAAAATAGCATTCTCAAGT+TGG 0.478113 3.2:+77738604 MS.gene057219:CDS
AATAACACTAGTAGTGTTGT+TGG 0.478175 3.2:+77736556 MS.gene057219:CDS
CTAACCTTTAAGGGTTGTGT+TGG 0.481457 3.2:-77736830 None:intergenic
TCCTGTTCCTGAAGTGGCAA+TGG 0.484261 3.2:-77738769 None:intergenic
GGAACAGCCACAGTAAAATC+AGG 0.486638 3.2:-77737622 None:intergenic
AGTTCAGAACTGTTATATAG+TGG 0.490372 3.2:-77738300 None:intergenic
TGATAGATCAAGTGATGAAA+GGG 0.490826 3.2:-77738511 None:intergenic
TCAATGAAACTAAAACCTCT+TGG 0.493104 3.2:-77738399 None:intergenic
GAGATAAGGATGAAGGGGAG+TGG 0.496353 3.2:-77737695 None:intergenic
GTCCAAATGTTGCATCATCA+AGG 0.496502 3.2:+77738865 MS.gene057219:CDS
AGATTGGAGATAAGGATGAA+GGG 0.498515 3.2:-77737701 None:intergenic
TTATTTGTGTGAAGTTCCAC+AGG 0.498667 3.2:-77737529 None:intergenic
CTGCTGGAAGTAACATTGCT+TGG 0.498835 3.2:-77738690 None:intergenic
GCTCAATCCAGCCCAACCTT+GGG 0.505605 3.2:+77738626 MS.gene057219:CDS
AGAACCATTGTTGGAGGTGG+TGG 0.506509 3.2:-77738469 None:intergenic
GTTCCACAGGCTTTCTTGAA+CGG 0.508728 3.2:-77737516 None:intergenic
TGTTGAACCTACCCAAGGTT+GGG 0.509162 3.2:-77738637 None:intergenic
TTTCTTGTAGTTGGATTAGG+AGG 0.509981 3.2:-77737643 None:intergenic
GGCTTGGAGTGGATGCTGAA+TGG 0.510711 3.2:+77738153 MS.gene057219:CDS
GATTGGAGATAAGGATGAAG+GGG 0.516351 3.2:-77737700 None:intergenic
TGGCGGCTTCAATAGGAATA+GGG 0.523564 3.2:+77736989 MS.gene057219:CDS
TCAGATTGGAGAGTTTGCAT+TGG 0.524106 3.2:-77738372 None:intergenic
GAATTGAATGAAAAGGGGCT+TGG 0.524945 3.2:+77738137 MS.gene057219:intron
CACTAGTAGTGTTGTTGGGT+CGG 0.525074 3.2:+77736561 MS.gene057219:CDS
GGGATTAAGTAAGAGAGGAA+AGG 0.533228 3.2:-77738340 None:intergenic
GGCCTTAGAACTTCAGCTAG+TGG 0.534033 3.2:-77738669 None:intergenic
TTGATAGATCAAGTGATGAA+AGG 0.535432 3.2:-77738512 None:intergenic
CTCCATTGAGCAATTGTGAA+AGG 0.540021 3.2:-77737018 None:intergenic
AATGGAGATCCAATTTCCCT+TGG 0.541965 3.2:+77738171 MS.gene057219:CDS
TACCATTCCTGTTCCTGAAG+TGG 0.542786 3.2:-77738775 None:intergenic
GGAATGGTATCATCTCCATC+TGG 0.544391 3.2:+77738789 MS.gene057219:CDS
ATTATGATAGGAACTTCCAT+TGG 0.546307 3.2:-77738247 None:intergenic
ACCACCACCACCTCCAACAA+TGG 0.549376 3.2:+77738465 MS.gene057219:CDS
GCTTCAGTTTCTGATAGTAG+TGG 0.551865 3.2:+77738834 MS.gene057219:CDS
ATACATGAAAGAAGATGAGA+AGG 0.554354 3.2:-77737096 None:intergenic
GGTGGTCACAGCAGGTGGAA+TGG 0.556637 3.2:+77736969 MS.gene057219:intron
AACAATGGTTCTGCATCAGT+TGG 0.557664 3.2:+77738480 MS.gene057219:CDS
TTATTATGCAAAACACCAGA+TGG 0.559997 3.2:-77738804 None:intergenic
AAAGACATGTTGTATGTTGT+GGG 0.561732 3.2:-77736715 None:intergenic
AAAAGACATGTTGTATGTTG+TGG 0.562174 3.2:-77736716 None:intergenic
AACAATACTGATCCAGAGGC+TGG 0.566845 3.2:+77737397 MS.gene057219:CDS
TGAGTTTCGCGTTCAAGACA+AGG 0.567509 3.2:+77736510 MS.gene057219:CDS
GTTTGTTGTTATGCATCAGA+GGG 0.575473 3.2:-77738215 None:intergenic
ATAACACTAGTAGTGTTGTT+GGG 0.575929 3.2:+77736557 MS.gene057219:CDS
AACAAACTTGGAATGACCAA+TGG 0.577256 3.2:+77738231 MS.gene057219:CDS
TAGTCATCATCAAATCAAAA+GGG 0.580379 3.2:+77737567 MS.gene057219:CDS
CATGATTATCAAAGAATGAA+CGG 0.581245 3.2:-77736648 None:intergenic
TCCTGAATTAGAAGCGCCAA+GGG 0.582031 3.2:-77738187 None:intergenic
AGTTTGTTGTTATGCATCAG+AGG 0.584443 3.2:-77738216 None:intergenic
GTGTTGAACCTACCCAAGGT+TGG 0.586263 3.2:-77738638 None:intergenic
TGCAGAACCATTGTTGGAGG+TGG 0.586637 3.2:-77738472 None:intergenic
GAGTTTGCATTGGAACAACA+AGG 0.591725 3.2:-77738362 None:intergenic
ATACTGATCCAGAGGCTGGT+AGG 0.593096 3.2:+77737401 MS.gene057219:CDS
ACACGATTTGTTGTTGTGAG+AGG 0.596043 3.2:-77738741 None:intergenic
TTGGCGCTTCTAATTCAGGA+TGG 0.599912 3.2:+77738190 MS.gene057219:CDS
TGGAAATGAATTCAGATACT+GGG 0.603286 3.2:-77738280 None:intergenic
TGCCACTTCAGGAACAGGAA+TGG 0.604108 3.2:+77738773 MS.gene057219:CDS
ACAAGGGGATTAAGTAAGAG+AGG 0.605379 3.2:-77738345 None:intergenic
GTTTGCATTGGAACAACAAG+GGG 0.608134 3.2:-77738360 None:intergenic
CCTTGGGTAGGTTCAACACC+TGG 0.608292 3.2:+77738642 MS.gene057219:CDS
ATCCTGAATTAGAAGCGCCA+AGG 0.609515 3.2:-77738188 None:intergenic
TCCCCGTTCAAGAAAGCCTG+TGG 0.619148 3.2:+77737513 MS.gene057219:CDS
GGTAGGTGCAGAAGAACAGA+TGG 0.619651 3.2:+77737418 MS.gene057219:CDS
GGTCACAGCAGGTGGAATGG+CGG 0.620189 3.2:+77736972 MS.gene057219:intron
TCCAAATGTTGCATCATCAA+GGG 0.620644 3.2:+77738866 MS.gene057219:CDS
CTCCAATCTGAGAAACCAAG+AGG 0.625201 3.2:+77738384 MS.gene057219:CDS
GAATGAAAAGGGGCTTGGAG+TGG 0.630089 3.2:+77738142 MS.gene057219:intron
ACTTCAGCTAGTGGACCACC+AGG 0.635831 3.2:-77738660 None:intergenic
TCCACAGGCTTTCTTGAACG+GGG 0.635923 3.2:-77737514 None:intergenic
AGGCTTCAAATAAGCAACCA+AGG 0.637520 3.2:+77737752 MS.gene057219:CDS
AATCCAGCCCAACCTTGGGT+AGG 0.638869 3.2:+77738630 MS.gene057219:CDS
TAGGAACAATACTGATCCAG+AGG 0.641405 3.2:+77737393 MS.gene057219:CDS
TGATGCAGAACCATTGTTGG+AGG 0.644016 3.2:-77738475 None:intergenic
CATTGAGCAATTGTGAAAGG+AGG 0.644246 3.2:-77737015 None:intergenic
AGTTTGCATTGGAACAACAA+GGG 0.661506 3.2:-77738361 None:intergenic
CCAGGTGTTGAACCTACCCA+AGG 0.666817 3.2:-77738642 None:intergenic
TCACTTGATCTATCAATGGG+AGG 0.680795 3.2:+77738519 MS.gene057219:CDS
TTGGTCTAATGCAGAGACAG+TGG 0.682367 3.2:+77738425 MS.gene057219:CDS
TGGGTAGGTTCAACACCTGG+TGG 0.687244 3.2:+77738645 MS.gene057219:CDS
TGTGAAAGACATATGCATAG+AGG 0.723539 3.2:+77737487 MS.gene057219:CDS
GATTATCAAAGAATGAACGG+TGG 0.727234 3.2:-77736645 None:intergenic
AATGCTATCATTGATAATGG+CGG 0.749635 3.2:+77736766 MS.gene057219:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATATGAAATTAATTA+AGG - chr3.2:77737146-77737165 None:intergenic 10.0%
!! ATATATAGAAAAATAAGTAG+TGG + chr3.2:77736880-77736899 MS.gene057219:intron 15.0%
!!! AAAAAAAATCAAGCTTTATT+TGG - chr3.2:77738032-77738051 None:intergenic 15.0%
!!! TAAATAAATGCATTGTTTTA+TGG + chr3.2:77738072-77738091 MS.gene057219:intron 15.0%
!! AAAAAAGCAGAAAAAGTTAA+TGG - chr3.2:77737195-77737214 None:intergenic 20.0%
!! AAAAAGCAGAAAAAGTTAAT+GGG - chr3.2:77737194-77737213 None:intergenic 20.0%
!! ATGAAAAGGTTGAAAATTTA+AGG - chr3.2:77736797-77736816 None:intergenic 20.0%
!! ATGATTAAACTTATTGAGTA+AGG - chr3.2:77738907-77738926 None:intergenic 20.0%
!!! TTTCATGTTTTGTTTTGATT+TGG + chr3.2:77737996-77738015 MS.gene057219:intron 20.0%
!!! TTTCTAGTTTGTTATTGATT+TGG + chr3.2:77738113-77738132 MS.gene057219:intron 20.0%
! AAACACAAACTAACCTTTAA+GGG - chr3.2:77736842-77736861 None:intergenic 25.0%
! AAGGTAAATAGAATGAAAAG+TGG - chr3.2:77737251-77737270 None:intergenic 25.0%
! AATCCAACTACAAGAAAATA+TGG + chr3.2:77737649-77737668 MS.gene057219:CDS 25.0%
! ACAAAACATGAAAGTGAATA+AGG - chr3.2:77737989-77738008 None:intergenic 25.0%
! ATAGTCATCATCAAATCAAA+AGG + chr3.2:77737566-77737585 MS.gene057219:CDS 25.0%
! ATATTGAGTTTGACTAAATC+AGG + chr3.2:77737828-77737847 MS.gene057219:intron 25.0%
! CATGATTATCAAAGAATGAA+CGG - chr3.2:77736651-77736670 None:intergenic 25.0%
! TAAACACAAACTAACCTTTA+AGG - chr3.2:77736843-77736862 None:intergenic 25.0%
! TAGTCATCATCAAATCAAAA+GGG + chr3.2:77737567-77737586 MS.gene057219:CDS 25.0%
! TATGATTTACAAGTACTTGA+TGG + chr3.2:77737059-77737078 MS.gene057219:CDS 25.0%
! TATGCAAAGAAAATGAAGAT+TGG - chr3.2:77737720-77737739 None:intergenic 25.0%
! TTTAAGAGTGAATTTCATAG+AGG - chr3.2:77738056-77738075 None:intergenic 25.0%
! TTTGGTGAATTGAATGAAAA+GGG + chr3.2:77738131-77738150 MS.gene057219:intron 25.0%
!! ATTTGGTGAATTGAATGAAA+AGG + chr3.2:77738130-77738149 MS.gene057219:intron 25.0%
!! TATTTTCTTGTAGTTGGATT+AGG - chr3.2:77737649-77737668 None:intergenic 25.0%
!!! GTTTTATGGTGTTAGTATTA+TGG + chr3.2:77738086-77738105 MS.gene057219:intron 25.0%
!!! TACAAACTTTTGACTCAAAA+TGG - chr3.2:77737222-77737241 None:intergenic 25.0%
!!! TGTCTTTGTTTGTTTTGATT+TGG + chr3.2:77737958-77737977 MS.gene057219:intron 25.0%
!!! TTGTTGTTGGTTTTTTTTGT+AGG - chr3.2:77736538-77736557 None:intergenic 25.0%
AAAAGACATGTTGTATGTTG+TGG - chr3.2:77736719-77736738 None:intergenic 30.0%
AAAGACATGTTGTATGTTGT+GGG - chr3.2:77736718-77736737 None:intergenic 30.0%
AAAGCAACACATGATGAAAA+AGG - chr3.2:77737296-77737315 None:intergenic 30.0%
AATAACACTAGTAGTGTTGT+TGG + chr3.2:77736556-77736575 MS.gene057219:CDS 30.0%
ACAAAGACATAGTACATGTT+TGG - chr3.2:77737947-77737966 None:intergenic 30.0%
AGTTCAGAACTGTTATATAG+TGG - chr3.2:77738303-77738322 None:intergenic 30.0%
ATACAGATATAAACTCACCT+TGG - chr3.2:77737772-77737791 None:intergenic 30.0%
ATACATGAAAGAAGATGAGA+AGG - chr3.2:77737099-77737118 None:intergenic 30.0%
ATTATGATAGGAACTTCCAT+TGG - chr3.2:77738250-77738269 None:intergenic 30.0%
CTAAAATAGCATTCTCAAGT+TGG + chr3.2:77738604-77738623 MS.gene057219:CDS 30.0%
GAAAATGAAGATTGGAGATA+AGG - chr3.2:77737712-77737731 None:intergenic 30.0%
GAAGAACAGATGGTAAAAAA+TGG + chr3.2:77737428-77737447 MS.gene057219:CDS 30.0%
GAAGCAGAAATGTTATGAAA+AGG - chr3.2:77736811-77736830 None:intergenic 30.0%
GCTAATGCTATCATTGATAA+TGG + chr3.2:77736763-77736782 MS.gene057219:CDS 30.0%
TCAATGAAACTAAAACCTCT+TGG - chr3.2:77738402-77738421 None:intergenic 30.0%
TCATCACTTGATCTATCAAT+GGG + chr3.2:77738516-77738535 MS.gene057219:CDS 30.0%
TGATAGATCAAGTGATGAAA+GGG - chr3.2:77738514-77738533 None:intergenic 30.0%
TGGAAATGAATTCAGATACT+GGG - chr3.2:77738283-77738302 None:intergenic 30.0%
TTATTATGCAAAACACCAGA+TGG - chr3.2:77738807-77738826 None:intergenic 30.0%
TTCATCACTTGATCTATCAA+TGG + chr3.2:77738515-77738534 MS.gene057219:CDS 30.0%
TTGATAGATCAAGTGATGAA+AGG - chr3.2:77738515-77738534 None:intergenic 30.0%
TTGGTGAATTGAATGAAAAG+GGG + chr3.2:77738132-77738151 MS.gene057219:intron 30.0%
TTTGTCATTGAATCAATGTG+TGG + chr3.2:77737270-77737289 MS.gene057219:intron 30.0%
! AACATACAACATGTCTTTTG+GGG + chr3.2:77736720-77736739 MS.gene057219:CDS 30.0%
! ACAACATACAACATGTCTTT+TGG + chr3.2:77736718-77736737 MS.gene057219:CDS 30.0%
! ACTACTAGTGTTATTGTTGT+TGG - chr3.2:77736551-77736570 None:intergenic 30.0%
! ATAACACTAGTAGTGTTGTT+GGG + chr3.2:77736557-77736576 MS.gene057219:CDS 30.0%
! CAACATACAACATGTCTTTT+GGG + chr3.2:77736719-77736738 MS.gene057219:CDS 30.0%
! GATCCATATTTTCTTGTAGT+TGG - chr3.2:77737655-77737674 None:intergenic 30.0%
! GGATTCAGTGTTATTATGAT+AGG - chr3.2:77738262-77738281 None:intergenic 30.0%
! TCAATTTGAGGCTATCAAAT+AGG + chr3.2:77737374-77737393 MS.gene057219:CDS 30.0%
!! AATGCTATCATTGATAATGG+CGG + chr3.2:77736766-77736785 MS.gene057219:CDS 30.0%
!! CACATTGATTCAATGACAAA+AGG - chr3.2:77737270-77737289 None:intergenic 30.0%
!! CTTTCACAGTACTTGTTATT+AGG - chr3.2:77737475-77737494 None:intergenic 30.0%
!!! ACTTGTGTTTTTTGTGTTTG+TGG + chr3.2:77736948-77736967 MS.gene057219:intron 30.0%
!!! GTTTTAGTTTCATTGATGCT+TGG + chr3.2:77738406-77738425 MS.gene057219:CDS 30.0%
AACAAACTTGGAATGACCAA+TGG + chr3.2:77738231-77738250 MS.gene057219:CDS 35.0%
AAGATTGGAGATAAGGATGA+AGG - chr3.2:77737705-77737724 None:intergenic 35.0%
AGATTGGAGATAAGGATGAA+GGG - chr3.2:77737704-77737723 None:intergenic 35.0%
AGTTTGCATTGGAACAACAA+GGG - chr3.2:77738364-77738383 None:intergenic 35.0%
CTGATGCATAACAACAAACT+TGG + chr3.2:77738219-77738238 MS.gene057219:CDS 35.0%
GATTATCAAAGAATGAACGG+TGG - chr3.2:77736648-77736667 None:intergenic 35.0%
GGATTAAGTAAGAGAGGAAA+GGG - chr3.2:77738342-77738361 None:intergenic 35.0%
GTGGAAATGAATTCAGATAC+TGG - chr3.2:77738284-77738303 None:intergenic 35.0%
TCCAAATGTTGCATCATCAA+GGG + chr3.2:77738866-77738885 MS.gene057219:CDS 35.0%
TGTGAAAGACATATGCATAG+AGG + chr3.2:77737487-77737506 MS.gene057219:CDS 35.0%
TTAGAAGATCCAAGCCTTAA+GGG - chr3.2:77737877-77737896 None:intergenic 35.0%
TTATTTGTGTGAAGTTCCAC+AGG - chr3.2:77737532-77737551 None:intergenic 35.0%
TTTGCATAATAGCAGCTTTG+AGG + chr3.2:77737732-77737751 MS.gene057219:CDS 35.0%
! ACATACAACATGTCTTTTGG+GGG + chr3.2:77736721-77736740 MS.gene057219:CDS 35.0%
! TGATTTTGCTGAATCCCTTA+AGG + chr3.2:77737860-77737879 MS.gene057219:intron 35.0%
! TTTCTTGTAGTTGGATTAGG+AGG - chr3.2:77737646-77737665 None:intergenic 35.0%
!! AGTTTGTTGTTATGCATCAG+AGG - chr3.2:77738219-77738238 None:intergenic 35.0%
!! GTTTGTTGTTATGCATCAGA+GGG - chr3.2:77738218-77738237 None:intergenic 35.0%
!!! TATCCTTGTTTTTGAAGCAG+TGG + chr3.2:77737342-77737361 MS.gene057219:intron 35.0%
!!! TGTGTTTTTTGTGTTTGTGG+TGG + chr3.2:77736951-77736970 MS.gene057219:intron 35.0%
AACCTCTTGGTTTCTCAGAT+TGG - chr3.2:77738389-77738408 None:intergenic 40.0%
AACTGATGCAGAACCATTGT+TGG - chr3.2:77738481-77738500 None:intergenic 40.0%
AATGGAGATCCAATTTCCCT+TGG + chr3.2:77738171-77738190 MS.gene057219:CDS 40.0%
ACAAGGGGATTAAGTAAGAG+AGG - chr3.2:77738348-77738367 None:intergenic 40.0%
AGGCTTCAAATAAGCAACCA+AGG + chr3.2:77737752-77737771 MS.gene057219:CDS 40.0%
CATCCACTGCTTCAAAAACA+AGG - chr3.2:77737348-77737367 None:intergenic 40.0%
CATTGAGCAATTGTGAAAGG+AGG - chr3.2:77737018-77737037 None:intergenic 40.0%
CTCCATTGAGCAATTGTGAA+AGG - chr3.2:77737021-77737040 None:intergenic 40.0%
CTCCTTTCACAATTGCTCAA+TGG + chr3.2:77737016-77737035 MS.gene057219:CDS 40.0%
CTTAGAAGATCCAAGCCTTA+AGG - chr3.2:77737878-77737897 None:intergenic 40.0%
GAAAGAAGATGAGAAGGAAC+AGG - chr3.2:77737093-77737112 None:intergenic 40.0%
GAATTGAATGAAAAGGGGCT+TGG + chr3.2:77738137-77738156 MS.gene057219:intron 40.0%
GAGTTTGCATTGGAACAACA+AGG - chr3.2:77738365-77738384 None:intergenic 40.0%
GATTGGAGATAAGGATGAAG+GGG - chr3.2:77737703-77737722 None:intergenic 40.0%
GCTTCAGTTTCTGATAGTAG+TGG + chr3.2:77738834-77738853 MS.gene057219:CDS 40.0%
GGGATTAAGTAAGAGAGGAA+AGG - chr3.2:77738343-77738362 None:intergenic 40.0%
GGGATTCAGCAAAATCACAA+TGG - chr3.2:77737857-77737876 None:intergenic 40.0%
GTCCAAATGTTGCATCATCA+AGG + chr3.2:77738865-77738884 MS.gene057219:CDS 40.0%
GTTTGCATTGGAACAACAAG+GGG - chr3.2:77738363-77738382 None:intergenic 40.0%
TAGGAACAATACTGATCCAG+AGG + chr3.2:77737393-77737412 MS.gene057219:CDS 40.0%
TCACTTGATCTATCAATGGG+AGG + chr3.2:77738519-77738538 MS.gene057219:CDS 40.0%
TCAGATTGGAGAGTTTGCAT+TGG - chr3.2:77738375-77738394 None:intergenic 40.0%
! AACAATGGTTCTGCATCAGT+TGG + chr3.2:77738480-77738499 MS.gene057219:CDS 40.0%
! CTAACCTTTAAGGGTTGTGT+TGG - chr3.2:77736833-77736852 None:intergenic 40.0%
! TGGATGGTGGTTTCAATTTG+AGG + chr3.2:77737362-77737381 MS.gene057219:CDS 40.0%
! TTCTCTGCCTGATTTTACTG+TGG + chr3.2:77737615-77737634 MS.gene057219:CDS 40.0%
!! ACACGATTTGTTGTTGTGAG+AGG - chr3.2:77738744-77738763 None:intergenic 40.0%
!! AGAATTTGTTGCATCACTGC+TGG - chr3.2:77738709-77738728 None:intergenic 40.0%
!!! CTTGTTTTTGAAGCAGTGGA+TGG + chr3.2:77737346-77737365 MS.gene057219:intron 40.0%
AACAATACTGATCCAGAGGC+TGG + chr3.2:77737397-77737416 MS.gene057219:CDS 45.0%
ATGGCGGCTTCAATAGGAAT+AGG + chr3.2:77736988-77737007 MS.gene057219:CDS 45.0%
CTCCAATCTGAGAAACCAAG+AGG + chr3.2:77738384-77738403 MS.gene057219:CDS 45.0%
CTGCTGGAAGTAACATTGCT+TGG - chr3.2:77738693-77738712 None:intergenic 45.0%
GCTGTTGATGCTGATGGTTA+TGG + chr3.2:77736691-77736710 MS.gene057219:CDS 45.0%
GCTTCCAACACAACCCTTAA+AGG + chr3.2:77736826-77736845 MS.gene057219:CDS 45.0%
GGAACAGCCACAGTAAAATC+AGG - chr3.2:77737625-77737644 None:intergenic 45.0%
GGAATGGTATCATCTCCATC+TGG + chr3.2:77738789-77738808 MS.gene057219:CDS 45.0%
GTCCACTAGCTGAAGTTCTA+AGG + chr3.2:77738667-77738686 MS.gene057219:CDS 45.0%
GTTCCACAGGCTTTCTTGAA+CGG - chr3.2:77737519-77737538 None:intergenic 45.0%
TACCATTCCTGTTCCTGAAG+TGG - chr3.2:77738778-77738797 None:intergenic 45.0%
TGAGTTTCGCGTTCAAGACA+AGG + chr3.2:77736510-77736529 MS.gene057219:CDS 45.0%
TGATGCAGAACCATTGTTGG+AGG - chr3.2:77738478-77738497 None:intergenic 45.0%
TGGCGGCTTCAATAGGAATA+GGG + chr3.2:77736989-77737008 MS.gene057219:CDS 45.0%
TGTTGAACCTACCCAAGGTT+GGG - chr3.2:77738640-77738659 None:intergenic 45.0%
TTCCACAGGCTTTCTTGAAC+GGG - chr3.2:77737518-77737537 None:intergenic 45.0%
TTGCTGAATCCCTTAAGGCT+TGG + chr3.2:77737865-77737884 MS.gene057219:intron 45.0%
TTGGCGCTTCTAATTCAGGA+TGG + chr3.2:77738190-77738209 MS.gene057219:CDS 45.0%
TTGGTCTAATGCAGAGACAG+TGG + chr3.2:77738425-77738444 MS.gene057219:CDS 45.0%
! CACTAGTAGTGTTGTTGGGT+CGG + chr3.2:77736561-77736580 MS.gene057219:CDS 45.0%
!! ATCCTGAATTAGAAGCGCCA+AGG - chr3.2:77738191-77738210 None:intergenic 45.0%
!! GCCCTTGATGATGCAACATT+TGG - chr3.2:77738870-77738889 None:intergenic 45.0%
!! TCCTGAATTAGAAGCGCCAA+GGG - chr3.2:77738190-77738209 None:intergenic 45.0%
!! TTAGAAGCGCCAAGGGAAAT+TGG - chr3.2:77738183-77738202 None:intergenic 45.0%
!!! GTTTTTGAAGCAGTGGATGG+TGG + chr3.2:77737349-77737368 MS.gene057219:intron 45.0%
AGAACCATTGTTGGAGGTGG+TGG - chr3.2:77738472-77738491 None:intergenic 50.0%
ATACTGATCCAGAGGCTGGT+AGG + chr3.2:77737401-77737420 MS.gene057219:CDS 50.0%
GAATGAAAAGGGGCTTGGAG+TGG + chr3.2:77738142-77738161 MS.gene057219:intron 50.0%
GAGATAAGGATGAAGGGGAG+TGG - chr3.2:77737698-77737717 None:intergenic 50.0%
GGCCTTAGAACTTCAGCTAG+TGG - chr3.2:77738672-77738691 None:intergenic 50.0%
GGTAGGTGCAGAAGAACAGA+TGG + chr3.2:77737418-77737437 MS.gene057219:CDS 50.0%
GTGTTGAACCTACCCAAGGT+TGG - chr3.2:77738641-77738660 None:intergenic 50.0%
TCCACAGGCTTTCTTGAACG+GGG - chr3.2:77737517-77737536 None:intergenic 50.0%
TCCCTTGGCGCTTCTAATTC+AGG + chr3.2:77738186-77738205 MS.gene057219:CDS 50.0%
TCCTGTTCCTGAAGTGGCAA+TGG - chr3.2:77738772-77738791 None:intergenic 50.0%
TCTGCTGCTGTTGATGCTGA+TGG + chr3.2:77736685-77736704 MS.gene057219:CDS 50.0%
TGCAGAACCATTGTTGGAGG+TGG - chr3.2:77738475-77738494 None:intergenic 50.0%
! GTCGAATCCATTGCCACTTC+AGG + chr3.2:77738762-77738781 MS.gene057219:CDS 50.0%
! TCCATTGCCACTTCAGGAAC+AGG + chr3.2:77738768-77738787 MS.gene057219:CDS 50.0%
! TGCCACTTCAGGAACAGGAA+TGG + chr3.2:77738773-77738792 MS.gene057219:CDS 50.0%
AATCCAGCCCAACCTTGGGT+AGG + chr3.2:77738630-77738649 MS.gene057219:CDS 55.0%
ACCACCACCACCTCCAACAA+TGG + chr3.2:77738465-77738484 MS.gene057219:CDS 55.0%
CCTTGGGTAGGTTCAACACC+TGG + chr3.2:77738642-77738661 MS.gene057219:CDS 55.0%
GCTCAATCCAGCCCAACCTT+GGG + chr3.2:77738626-77738645 MS.gene057219:CDS 55.0%
GGCTTGGAGTGGATGCTGAA+TGG + chr3.2:77738153-77738172 MS.gene057219:CDS 55.0%
GGGGGTGATTCTTCTGCTCT+AGG + chr3.2:77736739-77736758 MS.gene057219:CDS 55.0%
GGTGGAATGGCGGCTTCAAT+AGG + chr3.2:77736982-77737001 MS.gene057219:CDS 55.0%
GTGTTTGTGGTGGTCACAGC+AGG + chr3.2:77736961-77736980 MS.gene057219:intron 55.0%
TCCCCGTTCAAGAAAGCCTG+TGG + chr3.2:77737513-77737532 MS.gene057219:CDS 55.0%
TGGGTAGGTTCAACACCTGG+TGG + chr3.2:77738645-77738664 MS.gene057219:CDS 55.0%
TTTGTGGTGGTCACAGCAGG+TGG + chr3.2:77736964-77736983 MS.gene057219:intron 55.0%
! ACCATTGTTGGAGGTGGTGG+TGG - chr3.2:77738469-77738488 None:intergenic 55.0%
! ACTTCAGCTAGTGGACCACC+AGG - chr3.2:77738663-77738682 None:intergenic 55.0%
!! ATTGTTGGAGGTGGTGGTGG+TGG - chr3.2:77738466-77738485 None:intergenic 55.0%
!! CCAGGTGTTGAACCTACCCA+AGG - chr3.2:77738645-77738664 None:intergenic 55.0%
!! GGGTCGGTGCAGAGTTTTGA+AGG + chr3.2:77736577-77736596 MS.gene057219:CDS 55.0%
CTTCTGCACCTACCAGCCTC+TGG - chr3.2:77737412-77737431 None:intergenic 60.0%
GAACCTACCCAAGGTTGGGC+TGG - chr3.2:77738636-77738655 None:intergenic 60.0%
GGCTCAATCCAGCCCAACCT+TGG + chr3.2:77738625-77738644 MS.gene057219:CDS 60.0%
GGTCACAGCAGGTGGAATGG+CGG + chr3.2:77736972-77736991 MS.gene057219:intron 60.0%
GGTGGTCACAGCAGGTGGAA+TGG + chr3.2:77736969-77736988 MS.gene057219:intron 60.0%
!! GGAGGTGGTGGTGGTGGTGT+TGG - chr3.2:77738460-77738479 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 77736505 77738944 77736505 ID=MS.gene057219
chr3.2 mRNA 77736505 77738944 77736505 ID=MS.gene057219.t1;Parent=MS.gene057219
chr3.2 exon 77736505 77736847 77736505 ID=MS.gene057219.t1.exon1;Parent=MS.gene057219.t1
chr3.2 CDS 77736505 77736847 77736505 ID=cds.MS.gene057219.t1;Parent=MS.gene057219.t1
chr3.2 exon 77736980 77737114 77736980 ID=MS.gene057219.t1.exon2;Parent=MS.gene057219.t1
chr3.2 CDS 77736980 77737114 77736980 ID=cds.MS.gene057219.t1;Parent=MS.gene057219.t1
chr3.2 exon 77737362 77737773 77737362 ID=MS.gene057219.t1.exon3;Parent=MS.gene057219.t1
chr3.2 CDS 77737362 77737773 77737362 ID=cds.MS.gene057219.t1;Parent=MS.gene057219.t1
chr3.2 exon 77738152 77738944 77738152 ID=MS.gene057219.t1.exon4;Parent=MS.gene057219.t1
chr3.2 CDS 77738152 77738944 77738152 ID=cds.MS.gene057219.t1;Parent=MS.gene057219.t1
Gene Sequence

>MS.gene057219

ATGGGTGAGTTTCGCGTTCAAGACAAGGAACCTACAAAAAAAACCAACAACAATAACACTAGTAGTGTTGTTGGGTCGGTGCAGAGTTTTGAAGGTTTCTCTAATAAGAACGTGATGATACTGCAACATCATAATCATCACCACCGTTCATTCTTTGATAATCATGATTCTTCTTCTGTTTCTGCTGCTGTTGATGCTGATGGTTATGGTCCCACAACATACAACATGTCTTTTGGGGGTGATTCTTCTGCTCTAGGTGCTAATGCTATCATTGATAATGGCGGTGTATCCTTAAATTTTCAACCTTTTCATAACATTTCTGCTTCCAACACAACCCTTAAAGGTTAGTTTGTGTTTATTTCTTATTGTTCAATAATATATAGAAAAATAAGTAGTGGTCAGAAAAAAAAAAGAGTTCTGTACAAATTTCTGATTCTGAACATACTTGTGTTTTTTGTGTTTGTGGTGGTCACAGCAGGTGGAATGGCGGCTTCAATAGGAATAGGGTATCCTCCTTTCACAATTGCTCAATGGAGAGAGCTTGAAAGACAAGCTATGATTTACAAGTACTTGATGGCTTCACTTCCTGTTCCTTCTCATCTTCTTTCATGTATGATACGACTCTTTTCTCTCTTCTTCCTTAATTAATTTCATATTTTCATGTACAGACAAAGAAATTAACATAGCCCATTAACTTTTTCTGCTTTTTTAAGTCCATTTTGAGTCAAAAGTTTGTATTTTTACCACTTTTCATTCTATTTACCTTTTGTCATTGAATCAATGTGTGGCCTTTTTCATCATGTGTTGCTTTCTGTTCTTACTGTTTCTTGAAATTTGTATCCTTGTTTTTGAAGCAGTGGATGGTGGTTTCAATTTGAGGCTATCAAATAGGAACAATACTGATCCAGAGGCTGGTAGGTGCAGAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTAGCTCCTAATAACAAGTACTGTGAAAGACATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAACTTCACACAAATAACAATAACAATAGCAATAGTCATCATCAAATCAAAAGGGCTCGTTGTGATTCTTCTAATTCTTTTTCTCTGCCTGATTTTACTGTGGCTGTTCCTCCTAATCCAACTACAAGAAAATATGGATCTTCATCACATTTTCTTGCTTCCACTCCCCTTCATCCTTATCTCCAATCTTCATTTTCTTTGCATAATAGCAGCTTTGAGGCTTCAAATAAGCAACCAAGGTGAGTTTATATCTGTATTTTGCTATATCTGTTTAGAATCACATGTTTTGAATCATATTGAGTTTGACTAAATCAGGTTGCCATTGTGATTTTGCTGAATCCCTTAAGGCTTGGATCTTCTAAGTGTAGCTTTTGCTAAAATCTGTGATTCTTCTAAATTTATCATGAAACCAAACATGTACTATGTCTTTGTTTGTTTTGATTTGGATTTTCCTTATTCACTTTCATGTTTTGTTTTGATTTGGTCTAAAGACTCCAAATAAAGCTTGATTTTTTTTTCCTCTATGAAATTCACTCTTAAATAAATGCATTGTTTTATGGTGTTAGTATTATGGAATTTTTCTAGTTTGTTATTGATTTGGTGAATTGAATGAAAAGGGGCTTGGAGTGGATGCTGAATGGAGATCCAATTTCCCTTGGCGCTTCTAATTCAGGATGGAACCCTCTGATGCATAACAACAAACTTGGAATGACCAATGGAAGTTCCTATCATAATAACACTGAATCCCAGTATCTGAATTCATTTCCACTATATAACAGTTCTGAACTAGCTCAACATGAAAAACCCTTTCCTCTCTTACTTAATCCCCTTGTTGTTCCAATGCAAACTCTCCAATCTGAGAAACCAAGAGGTTTTAGTTTCATTGATGCTTGGTCTAATGCAGAGACAGTGGAAAACAATGCCAACACCACCACCACCACCTCCAACAATGGTTCTGCATCAGTTGGTAAATTATCCCTTTCATCACTTGATCTATCAATGGGAGGTAGTGCTGTGAGTGAAGAAATGAGTACTATTGAAATGAATGCTGCGAGTGATGATGATAGTACTAAAATAGCATTCTCAAGTTGGCTCAATCCAGCCCAACCTTGGGTAGGTTCAACACCTGGTGGTCCACTAGCTGAAGTTCTAAGGCCAAGCAATGTTACTTCCAGCAGTGATGCAACAAATTCTAATTCATCATCACCTCTCACAACAACAAATCGTGTCGAATCCATTGCCACTTCAGGAACAGGAATGGTATCATCTCCATCTGGTGTTTTGCATAATAAAACACTTGCTTCAGTTTCTGATAGTAGTGGAAATAGCAGTCCAAATGTTGCATCATCAAGGGCTAATTCTGAAATTGCCTTACTCAATAAGTTTAATCATATTTCATATGTAAATTAA

Protein sequence

>MS.gene057219.t1

MGEFRVQDKEPTKKTNNNNTSSVVGSVQSFEGFSNKNVMILQHHNHHHRSFFDNHDSSSVSAAVDADGYGPTTYNMSFGGDSSALGANAIIDNGGVSLNFQPFHNISASNTTLKAGGMAASIGIGYPPFTIAQWRELERQAMIYKYLMASLPVPSHLLSLDGGFNLRLSNRNNTDPEAGRCRRTDGKKWRCSRDVAPNNKYCERHMHRGRPRSRKPVELHTNNNNNSNSHHQIKRARCDSSNSFSLPDFTVAVPPNPTTRKYGSSSHFLASTPLHPYLQSSFSLHNSSFEASNKQPRGLEWMLNGDPISLGASNSGWNPLMHNNKLGMTNGSSYHNNTESQYLNSFPLYNSSELAQHEKPFPLLLNPLVVPMQTLQSEKPRGFSFIDAWSNAETVENNANTTTTTSNNGSASVGKLSLSSLDLSMGGSAVSEEMSTIEMNAASDDDSTKIAFSSWLNPAQPWVGSTPGGPLAEVLRPSNVTSSSDATNSNSSSPLTTTNRVESIATSGTGMVSSPSGVLHNKTLASVSDSSGNSSPNVASSRANSEIALLNKFNHISYVN