Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057242.t1 | RHN47981.1 | 87 | 185 | 22 | 1 | 1 | 185 | 1 | 183 | 3.50E-88 | 334.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057242.t1 | Q9SZL8 | 31.2 | 189 | 127 | 2 | 6 | 191 | 69 | 257 | 9.2e-21 | 102.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057242.t1 | A0A396H640 | 87.0 | 185 | 22 | 1 | 1 | 185 | 1 | 183 | 2.5e-88 | 334.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene057242.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057242.t1 | MTR_5g039760 | 70.811 | 185 | 28 | 2 | 1 | 185 | 1 | 159 | 1.93e-87 | 257 |
| MS.gene057242.t1 | MTR_7g074790 | 61.538 | 182 | 49 | 3 | 1 | 182 | 1 | 161 | 7.43e-70 | 214 |
| MS.gene057242.t1 | MTR_7g061980 | 69.167 | 120 | 36 | 1 | 1 | 120 | 1 | 119 | 4.96e-57 | 177 |
| MS.gene057242.t1 | MTR_0402s0040 | 41.899 | 179 | 96 | 6 | 10 | 185 | 26 | 199 | 3.46e-32 | 122 |
| MS.gene057242.t1 | MTR_4g102720 | 32.911 | 158 | 71 | 3 | 7 | 164 | 4 | 126 | 4.60e-24 | 96.3 |
| MS.gene057242.t1 | MTR_4g069880 | 61.905 | 63 | 24 | 0 | 1 | 63 | 1 | 63 | 2.55e-22 | 87.4 |
| MS.gene057242.t1 | MTR_2g070590 | 42.857 | 105 | 57 | 3 | 10 | 112 | 17 | 120 | 1.50e-18 | 79.0 |
| MS.gene057242.t1 | MTR_2g099430 | 48.315 | 89 | 43 | 3 | 33 | 120 | 26 | 112 | 9.38e-18 | 76.6 |
| MS.gene057242.t1 | MTR_5g015480 | 40.650 | 123 | 70 | 3 | 10 | 130 | 56 | 177 | 1.05e-17 | 80.1 |
| MS.gene057242.t1 | MTR_1g019850 | 34.328 | 134 | 80 | 3 | 10 | 142 | 70 | 196 | 2.46e-17 | 78.6 |
| MS.gene057242.t1 | MTR_6g051425 | 27.933 | 179 | 119 | 4 | 3 | 173 | 8 | 184 | 2.16e-16 | 77.4 |
| MS.gene057242.t1 | MTR_6g017200 | 44.578 | 83 | 44 | 2 | 10 | 91 | 58 | 139 | 2.06e-15 | 71.6 |
| MS.gene057242.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 55 | 161 | 4.42e-13 | 67.0 |
| MS.gene057242.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 55 | 161 | 4.76e-13 | 66.6 |
| MS.gene057242.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 73 | 179 | 6.19e-13 | 66.6 |
| MS.gene057242.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 75 | 181 | 6.22e-13 | 66.6 |
| MS.gene057242.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 75 | 181 | 6.46e-13 | 66.6 |
| MS.gene057242.t1 | MTR_7g113010 | 37.500 | 128 | 63 | 4 | 10 | 135 | 457 | 569 | 7.02e-13 | 67.8 |
| MS.gene057242.t1 | MTR_1g013060 | 28.743 | 167 | 114 | 2 | 7 | 168 | 21 | 187 | 1.06e-12 | 65.9 |
| MS.gene057242.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 115 | 221 | 1.45e-12 | 66.2 |
| MS.gene057242.t1 | MTR_5g076070 | 29.193 | 161 | 112 | 2 | 13 | 171 | 56 | 216 | 9.05e-12 | 63.9 |
| MS.gene057242.t1 | MTR_1g057920 | 38.554 | 83 | 49 | 2 | 10 | 91 | 34 | 115 | 1.97e-11 | 60.1 |
| MS.gene057242.t1 | MTR_2g098880 | 33.036 | 112 | 65 | 3 | 9 | 114 | 60 | 167 | 2.53e-11 | 62.0 |
| MS.gene057242.t1 | MTR_2g098880 | 33.036 | 112 | 65 | 3 | 9 | 114 | 72 | 179 | 2.56e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057242.t1 | AT4G38180 | 31.217 | 189 | 127 | 2 | 6 | 191 | 69 | 257 | 4.59e-20 | 89.4 |
| MS.gene057242.t1 | AT5G18960 | 39.423 | 104 | 48 | 2 | 9 | 111 | 42 | 131 | 1.11e-14 | 73.6 |
| MS.gene057242.t1 | AT5G18960 | 39.423 | 104 | 48 | 2 | 9 | 111 | 42 | 131 | 1.11e-14 | 73.6 |
| MS.gene057242.t1 | AT3G06250 | 38.462 | 104 | 49 | 2 | 9 | 111 | 27 | 116 | 3.47e-14 | 72.0 |
| MS.gene057242.t1 | AT3G06250 | 38.462 | 104 | 49 | 2 | 9 | 111 | 27 | 116 | 3.47e-14 | 72.0 |
| MS.gene057242.t1 | AT3G06250 | 38.462 | 104 | 49 | 2 | 9 | 111 | 27 | 116 | 3.47e-14 | 72.0 |
| MS.gene057242.t1 | AT4G15090 | 27.950 | 161 | 113 | 3 | 3 | 162 | 44 | 202 | 2.15e-13 | 69.7 |
| MS.gene057242.t1 | AT4G15090 | 27.950 | 161 | 113 | 3 | 3 | 162 | 44 | 202 | 2.15e-13 | 69.7 |
| MS.gene057242.t1 | AT4G15090 | 27.950 | 161 | 113 | 3 | 3 | 162 | 44 | 202 | 2.15e-13 | 69.7 |
| MS.gene057242.t1 | AT4G15090 | 27.950 | 161 | 113 | 3 | 3 | 162 | 44 | 202 | 2.15e-13 | 69.7 |
| MS.gene057242.t1 | AT4G15090 | 27.950 | 161 | 113 | 3 | 3 | 162 | 44 | 202 | 2.15e-13 | 69.7 |
| MS.gene057242.t1 | AT3G59470 | 35.577 | 104 | 64 | 2 | 9 | 111 | 69 | 170 | 3.52e-12 | 64.7 |
| MS.gene057242.t1 | AT3G59470 | 35.577 | 104 | 64 | 2 | 9 | 111 | 69 | 170 | 3.52e-12 | 64.7 |
| MS.gene057242.t1 | AT3G59470 | 35.577 | 104 | 64 | 2 | 9 | 111 | 81 | 182 | 4.25e-12 | 64.7 |
| MS.gene057242.t1 | AT3G07500 | 38.462 | 104 | 62 | 2 | 9 | 111 | 32 | 134 | 5.70e-12 | 63.5 |
| MS.gene057242.t1 | AT1G76320 | 30.935 | 139 | 82 | 5 | 14 | 150 | 1 | 127 | 6.19e-11 | 62.4 |
| MS.gene057242.t1 | AT1G76320 | 30.935 | 139 | 82 | 5 | 14 | 150 | 1 | 127 | 6.49e-11 | 62.4 |
| MS.gene057242.t1 | AT1G76320 | 30.935 | 139 | 82 | 5 | 14 | 150 | 1 | 127 | 6.49e-11 | 62.4 |
| MS.gene057242.t1 | AT1G76320 | 30.935 | 139 | 82 | 5 | 14 | 150 | 1 | 127 | 7.01e-11 | 62.0 |
| MS.gene057242.t1 | AT2G43280 | 34.058 | 138 | 84 | 6 | 9 | 142 | 21 | 155 | 8.21e-11 | 60.1 |
Find 44 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCTTAATCCAGAGTTAT+TGG | 0.153704 | 3.2:+77955834 | None:intergenic |
| TGGAAGAGGCTAAACAATTT+TGG | 0.190934 | 3.2:-77956188 | MS.gene057242:CDS |
| TGGAATGGGATTTGATAATA+TGG | 0.291396 | 3.2:-77956208 | MS.gene057242:CDS |
| ACAAGCATATGAAATTGATA+TGG | 0.409436 | 3.2:-77955857 | MS.gene057242:CDS |
| TATGGTTTACGTGTGGGCTT+CGG | 0.418417 | 3.2:-77956159 | MS.gene057242:CDS |
| AAGGAAGGGGTGAAGAATAC+AGG | 0.418578 | 3.2:-77956069 | MS.gene057242:CDS |
| ATGTAGGTTCGTTTGTTGTA+AGG | 0.422514 | 3.2:-77956088 | MS.gene057242:CDS |
| ATTCGATTTCTTAACAACTT+AGG | 0.424669 | 3.2:+77954487 | None:intergenic |
| ATCTTGCACAATGCCATAAC+GGG | 0.434412 | 3.2:+77954537 | None:intergenic |
| TGGCATCTATAAATGTTGAT+TGG | 0.446274 | 3.2:-77956242 | MS.gene057242:CDS |
| TCAAATCCCATTCCAACCTC+TGG | 0.449329 | 3.2:+77956216 | None:intergenic |
| CGAAGCATGTGTGTAGTCTC+TGG | 0.453868 | 3.2:+77955904 | None:intergenic |
| ATTGATATGGCCAATAACTC+TGG | 0.454000 | 3.2:-77955844 | MS.gene057242:CDS |
| TGGACAAGGGAAGCCCGTTA+TGG | 0.472858 | 3.2:-77954550 | MS.gene057242:CDS |
| GGTTCGTTTGTTGTAAGGAA+GGG | 0.477120 | 3.2:-77956083 | MS.gene057242:CDS |
| CTTGCTTATGGTTTACGTGT+GGG | 0.490896 | 3.2:-77956165 | MS.gene057242:CDS |
| AATCTTGCACAATGCCATAA+CGG | 0.499131 | 3.2:+77954536 | None:intergenic |
| TGGAAGCCAGAGGTTGGAAT+GGG | 0.504538 | 3.2:-77956222 | MS.gene057242:CDS |
| AGGTTCGTTTGTTGTAAGGA+AGG | 0.507670 | 3.2:-77956084 | MS.gene057242:CDS |
| ACACTTTCACGTTGTAAGAA+CGG | 0.515117 | 3.2:-77955979 | MS.gene057242:CDS |
| CAACTTATGAGCACGCATGC+AGG | 0.519824 | 3.2:-77955799 | MS.gene057242:CDS |
| GTTCGTTTGTTGTAAGGAAG+GGG | 0.523718 | 3.2:-77956082 | MS.gene057242:CDS |
| TATGTTCATCTAGAAACTCA+TGG | 0.526110 | 3.2:+77955944 | None:intergenic |
| GTTGATTGGAAGCCAGAGGT+TGG | 0.535516 | 3.2:-77956228 | MS.gene057242:CDS |
| GGGATTTGATAATATGGAAG+AGG | 0.538633 | 3.2:-77956202 | MS.gene057242:CDS |
| TTTATGGGAAATGAGGTTGA+AGG | 0.539484 | 3.2:-77954514 | MS.gene057242:CDS |
| CACTGTTATCAATAAACTTG+AGG | 0.545705 | 3.2:+77954401 | None:intergenic |
| TTGGAAGCCAGAGGTTGGAA+TGG | 0.550618 | 3.2:-77956223 | MS.gene057242:CDS |
| CTGATATGTATATCTTAAGA+AGG | 0.552468 | 3.2:-77954573 | MS.gene057242:CDS |
| GCTTGCTTATGGTTTACGTG+TGG | 0.553841 | 3.2:-77956166 | MS.gene057242:CDS |
| CTCTAAGTTCATTAGAGCAG+CGG | 0.565189 | 3.2:-77954449 | MS.gene057242:CDS |
| ACGTTGTAAGAACGGAAAGT+TGG | 0.570358 | 3.2:-77955971 | MS.gene057242:CDS |
| ATATCTTAAGAAGGTGGACA+AGG | 0.586063 | 3.2:-77954564 | MS.gene057242:CDS |
| AACTTATGAGCACGCATGCA+GGG | 0.587100 | 3.2:-77955798 | MS.gene057242:CDS |
| ACGGTACTGTAACATCATGT+AGG | 0.593717 | 3.2:-77956104 | MS.gene057242:CDS |
| GTGAAAGTGTAATTCTTGCA+AGG | 0.603620 | 3.2:+77955992 | None:intergenic |
| ATATGTATATCTTAAGAAGG+TGG | 0.611193 | 3.2:-77954570 | MS.gene057242:CDS |
| GCAGGGCATAGAGCTAATGT+AGG | 0.612172 | 3.2:-77955781 | MS.gene057242:CDS |
| AAATGTTGATTGGAAGCCAG+AGG | 0.615417 | 3.2:-77956232 | MS.gene057242:CDS |
| TTTACAAACAGGAAGAAAGA+CGG | 0.633119 | 3.2:-77956123 | MS.gene057242:CDS |
| AGGAAGGGGTGAAGAATACA+GGG | 0.640492 | 3.2:-77956068 | MS.gene057242:CDS |
| CGTGCTCATAAGTTGAAATG+TGG | 0.644531 | 3.2:+77955807 | None:intergenic |
| TAATGTAGGATTTACAGTGA+AGG | 0.654106 | 3.2:-77955767 | MS.gene057242:CDS |
| TATCTTAAGAAGGTGGACAA+GGG | 0.672366 | 3.2:-77954563 | MS.gene057242:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAATTGAGTCATTTAAA+TGG | - | chr3.2:77955198-77955217 | MS.gene057242:intron | 20.0% |
| !! | ATAATATTCGTGATAAATCT+TGG | - | chr3.2:77955492-77955511 | MS.gene057242:intron | 20.0% |
| !! | TATGGGCTTAAAAAAAAAAT+GGG | - | chr3.2:77955527-77955546 | MS.gene057242:intron | 20.0% |
| !! | TGAAAAAAGAAAAAGAAGTA+TGG | - | chr3.2:77954896-77954915 | MS.gene057242:intron | 20.0% |
| !! | TTATGGGCTTAAAAAAAAAA+TGG | - | chr3.2:77955526-77955545 | MS.gene057242:intron | 20.0% |
| !!! | AACAAATTACAAATGTGTTT+TGG | - | chr3.2:77955012-77955031 | MS.gene057242:intron | 20.0% |
| ! | ACAAGCATATGAAATTGATA+TGG | - | chr3.2:77954764-77954783 | MS.gene057242:intron | 25.0% |
| ! | ATATGTATATCTTAAGAAGG+TGG | - | chr3.2:77956051-77956070 | MS.gene057242:CDS | 25.0% |
| ! | ATTCGATTTCTTAACAACTT+AGG | + | chr3.2:77956137-77956156 | None:intergenic | 25.0% |
| ! | CTGATATGTATATCTTAAGA+AGG | - | chr3.2:77956048-77956067 | MS.gene057242:CDS | 25.0% |
| ! | CTTTGAATTGAATGATGTTA+AGG | - | chr3.2:77956019-77956038 | MS.gene057242:CDS | 25.0% |
| !! | GTCTTTCACAATATTTTCAA+CGG | - | chr3.2:77954937-77954956 | MS.gene057242:intron | 25.0% |
| !!! | CACATTTGTAATTTGTTCTT+CGG | + | chr3.2:77955009-77955028 | None:intergenic | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | + | chr3.2:77955117-77955136 | None:intergenic | 30.0% | |
| AAAATGGAGTCAAACATCTT+GGG | - | chr3.2:77955360-77955379 | MS.gene057242:intron | 30.0% | |
| AAATGATCGAACCTCTATAA+TGG | + | chr3.2:77955154-77955173 | None:intergenic | 30.0% | |
| CACTGTTATCAATAAACTTG+AGG | + | chr3.2:77956223-77956242 | None:intergenic | 30.0% | |
| CGAAATGATTGAAGAATTCT+AGG | + | chr3.2:77955659-77955678 | None:intergenic | 30.0% | |
| TAATGTAGGATTTACAGTGA+AGG | - | chr3.2:77954854-77954873 | MS.gene057242:intron | 30.0% | |
| TATGTTCATCTAGAAACTCA+TGG | + | chr3.2:77954680-77954699 | None:intergenic | 30.0% | |
| TGGCATCTATAAATGTTGAT+TGG | - | chr3.2:77954379-77954398 | MS.gene057242:CDS | 30.0% | |
| TTTACAAACAGGAAGAAAGA+CGG | - | chr3.2:77954498-77954517 | MS.gene057242:CDS | 30.0% | |
| TTTCCTTAGTGATGACATAT+TGG | + | chr3.2:77955890-77955909 | None:intergenic | 30.0% | |
| ! | ACATGACACTTGTTACAAAA+TGG | - | chr3.2:77955344-77955363 | MS.gene057242:intron | 30.0% |
| ! | ATATTTTCAACGGCAATTGT+TGG | - | chr3.2:77954947-77954966 | MS.gene057242:intron | 30.0% |
| ! | ATTTTGGATTACGGGTATTT+TGG | - | chr3.2:77955050-77955069 | MS.gene057242:intron | 30.0% |
| ! | TATAGAGGTTCGATCATTTT+TGG | - | chr3.2:77955155-77955174 | MS.gene057242:intron | 30.0% |
| ! | TGGAATGGGATTTGATAATA+TGG | - | chr3.2:77954413-77954432 | MS.gene057242:CDS | 30.0% |
| ! | TGTGTATACTTTTCCCATTT+GGG | + | chr3.2:77955781-77955800 | None:intergenic | 30.0% |
| ! | TGTTTGAAGTTTGAGACATT+TGG | - | chr3.2:77955969-77955988 | MS.gene057242:CDS | 30.0% |
| ! | TTAGAGTACGTTTTACAAAC+AGG | - | chr3.2:77954487-77954506 | MS.gene057242:CDS | 30.0% |
| !! | AATTCTAGGATATCCACATT+TGG | + | chr3.2:77955645-77955664 | None:intergenic | 30.0% |
| !! | ATGAAGGAAGTATTAACACT+TGG | - | chr3.2:77955561-77955580 | MS.gene057242:intron | 30.0% |
| !! | CATCAGATTTTGAGAAACTT+TGG | - | chr3.2:77955450-77955469 | MS.gene057242:intron | 30.0% |
| !!! | AAACAATTTTGGCTTGCTTA+TGG | - | chr3.2:77954444-77954463 | MS.gene057242:CDS | 30.0% |
| !!! | TCTGGTTTTAACCATTATAG+AGG | - | chr3.2:77955140-77955159 | MS.gene057242:intron | 30.0% |
| AATCTTGCACAATGCCATAA+CGG | + | chr3.2:77956088-77956107 | None:intergenic | 35.0% | |
| ACACTTTCACGTTGTAAGAA+CGG | - | chr3.2:77954642-77954661 | MS.gene057242:intron | 35.0% | |
| ATATCTTAAGAAGGTGGACA+AGG | - | chr3.2:77956057-77956076 | MS.gene057242:CDS | 35.0% | |
| ATCACTAAGGAAAAACACGA+AGG | - | chr3.2:77955897-77955916 | MS.gene057242:CDS | 35.0% | |
| ATTGATATGGCCAATAACTC+TGG | - | chr3.2:77954777-77954796 | MS.gene057242:intron | 35.0% | |
| CAAAATGGAGTCAAACATCT+TGG | - | chr3.2:77955359-77955378 | MS.gene057242:intron | 35.0% | |
| CACTAACCAAGATCAATCAA+TGG | - | chr3.2:77955274-77955293 | MS.gene057242:intron | 35.0% | |
| CATCTGATATGCATGAAAGA+AGG | + | chr3.2:77954982-77955001 | None:intergenic | 35.0% | |
| CCAGAGAAAAAAAAAGCAAG+TGG | + | chr3.2:77955125-77955144 | None:intergenic | 35.0% | |
| CTGTCTTAATCCAGAGTTAT+TGG | + | chr3.2:77954790-77954809 | None:intergenic | 35.0% | |
| CTTCAAACAACTACAAGCAA+TGG | + | chr3.2:77955958-77955977 | None:intergenic | 35.0% | |
| CTTCTTTCATGCATATCAGA+TGG | - | chr3.2:77954980-77954999 | MS.gene057242:intron | 35.0% | |
| CTTGGATCAAGACAACTTAT+GGG | - | chr3.2:77955510-77955529 | MS.gene057242:intron | 35.0% | |
| GAGTCAGTTTCATGTCTAAT+TGG | + | chr3.2:77955861-77955880 | None:intergenic | 35.0% | |
| GGGATCAAAAATGCATATGA+AGG | - | chr3.2:77954573-77954592 | MS.gene057242:CDS | 35.0% | |
| GGGCTTAAAAAAAAAATGGG+CGG | - | chr3.2:77955530-77955549 | MS.gene057242:intron | 35.0% | |
| TATCTTAAGAAGGTGGACAA+GGG | - | chr3.2:77956058-77956077 | MS.gene057242:CDS | 35.0% | |
| TCACCAATACTAACCCAAAT+GGG | - | chr3.2:77955765-77955784 | MS.gene057242:CDS | 35.0% | |
| TCTTGGATCAAGACAACTTA+TGG | - | chr3.2:77955509-77955528 | MS.gene057242:intron | 35.0% | |
| TGATATGCATGAAAGAAGGA+TGG | + | chr3.2:77954978-77954997 | None:intergenic | 35.0% | |
| TTCACCAATACTAACCCAAA+TGG | - | chr3.2:77955764-77955783 | MS.gene057242:intron | 35.0% | |
| TTGCCAATATGTCATCACTA+AGG | - | chr3.2:77955884-77955903 | MS.gene057242:CDS | 35.0% | |
| TTTATGGGAAATGAGGTTGA+AGG | - | chr3.2:77956107-77956126 | MS.gene057242:CDS | 35.0% | |
| ! | AGAAAAAGAAGTATGGCGTA+TGG | - | chr3.2:77954903-77954922 | MS.gene057242:intron | 35.0% |
| ! | CACGTATGATTTTGGATTAC+GGG | - | chr3.2:77955042-77955061 | MS.gene057242:intron | 35.0% |
| ! | GCAAGATTTTATGGGAAATG+AGG | - | chr3.2:77956100-77956119 | MS.gene057242:CDS | 35.0% |
| ! | GCACGTATGATTTTGGATTA+CGG | - | chr3.2:77955041-77955060 | MS.gene057242:intron | 35.0% |
| ! | GGCATTGTGCAAGATTTTAT+GGG | - | chr3.2:77956092-77956111 | MS.gene057242:CDS | 35.0% |
| ! | GGGATTTGATAATATGGAAG+AGG | - | chr3.2:77954419-77954438 | MS.gene057242:CDS | 35.0% |
| ! | GTGAAAGTGTAATTCTTGCA+AGG | + | chr3.2:77954632-77954651 | None:intergenic | 35.0% |
| ! | GTGTGTATACTTTTCCCATT+TGG | + | chr3.2:77955782-77955801 | None:intergenic | 35.0% |
| ! | TGGAAGAGGCTAAACAATTT+TGG | - | chr3.2:77954433-77954452 | MS.gene057242:CDS | 35.0% |
| ! | TGGCATTGTGCAAGATTTTA+TGG | - | chr3.2:77956091-77956110 | MS.gene057242:CDS | 35.0% |
| !! | ATGTAGGTTCGTTTGTTGTA+AGG | - | chr3.2:77954533-77954552 | MS.gene057242:CDS | 35.0% |
| !! | TTTCCCATTTGGGTTAGTAT+TGG | + | chr3.2:77955771-77955790 | None:intergenic | 35.0% |
| !!! | CCACTTGCTTTTTTTTTCTC+TGG | - | chr3.2:77955122-77955141 | MS.gene057242:intron | 35.0% |
| AATCCTCACATAAGCTTGCA+AGG | - | chr3.2:77955727-77955746 | MS.gene057242:intron | 40.0% | |
| ACATCTTGGGAACTTCATGA+AGG | - | chr3.2:77955373-77955392 | MS.gene057242:intron | 40.0% | |
| ACGGTACTGTAACATCATGT+AGG | - | chr3.2:77954517-77954536 | MS.gene057242:CDS | 40.0% | |
| ACGTTGTAAGAACGGAAAGT+TGG | - | chr3.2:77954650-77954669 | MS.gene057242:intron | 40.0% | |
| AGGAAAAACACGAAGGATCT+TGG | - | chr3.2:77955904-77955923 | MS.gene057242:CDS | 40.0% | |
| AGTGTCATGTGCATAAACCA+TGG | + | chr3.2:77955334-77955353 | None:intergenic | 40.0% | |
| ATCTTGCACAATGCCATAAC+GGG | + | chr3.2:77956087-77956106 | None:intergenic | 40.0% | |
| CATCTTGGGAACTTCATGAA+GGG | - | chr3.2:77955374-77955393 | MS.gene057242:intron | 40.0% | |
| CTCTAAGTTCATTAGAGCAG+CGG | - | chr3.2:77956172-77956191 | MS.gene057242:CDS | 40.0% | |
| CTTGCTTATGGTTTACGTGT+GGG | - | chr3.2:77954456-77954475 | MS.gene057242:CDS | 40.0% | |
| GTCTTGTATGCAACCAAATG+TGG | - | chr3.2:77955629-77955648 | MS.gene057242:intron | 40.0% | |
| TGGTTAGTGAAGATCGTCTT+TGG | + | chr3.2:77955263-77955282 | None:intergenic | 40.0% | |
| ! | AAATGTTGATTGGAAGCCAG+AGG | - | chr3.2:77954389-77954408 | MS.gene057242:CDS | 40.0% |
| ! | CACTTGCCATTGATTGATCT+TGG | + | chr3.2:77955283-77955302 | None:intergenic | 40.0% |
| ! | CGTGCTCATAAGTTGAAATG+TGG | + | chr3.2:77954817-77954836 | None:intergenic | 40.0% |
| ! | GTGTAGTCTCTGGATTTTGT+AGG | + | chr3.2:77954710-77954729 | None:intergenic | 40.0% |
| ! | GTGTGATGCACGTATGATTT+TGG | - | chr3.2:77955034-77955053 | MS.gene057242:intron | 40.0% |
| ! | TCTCTGGATTTTGTAGGTCA+TGG | + | chr3.2:77954704-77954723 | None:intergenic | 40.0% |
| !! | AGGTTCGTTTGTTGTAAGGA+AGG | - | chr3.2:77954537-77954556 | MS.gene057242:CDS | 40.0% |
| !! | GGTTCGTTTGTTGTAAGGAA+GGG | - | chr3.2:77954538-77954557 | MS.gene057242:CDS | 40.0% |
| !! | GTTCGTTTGTTGTAAGGAAG+GGG | - | chr3.2:77954539-77954558 | MS.gene057242:CDS | 40.0% |
| AACTTATGAGCACGCATGCA+GGG | - | chr3.2:77954823-77954842 | MS.gene057242:intron | 45.0% | |
| AAGCAAGTGGTCTATTGGCA+TGG | + | chr3.2:77955112-77955131 | None:intergenic | 45.0% | |
| AAGGAAGGGGTGAAGAATAC+AGG | - | chr3.2:77954552-77954571 | MS.gene057242:CDS | 45.0% | |
| AAGTGGTCTATTGGCATGGT+TGG | + | chr3.2:77955108-77955127 | None:intergenic | 45.0% | |
| AGGAAGGGGTGAAGAATACA+GGG | - | chr3.2:77954553-77954572 | MS.gene057242:CDS | 45.0% | |
| AGTATGGCGTATGGTGAGAT+TGG | - | chr3.2:77954912-77954931 | MS.gene057242:intron | 45.0% | |
| CAACCTTGCAAGCTTATGTG+AGG | + | chr3.2:77955733-77955752 | None:intergenic | 45.0% | |
| CATAAACCATGGTGAGTCTC+AGG | + | chr3.2:77955323-77955342 | None:intergenic | 45.0% | |
| GCTTGCTTATGGTTTACGTG+TGG | - | chr3.2:77954455-77954474 | MS.gene057242:CDS | 45.0% | |
| TATGGTTTACGTGTGGGCTT+CGG | - | chr3.2:77954462-77954481 | MS.gene057242:CDS | 45.0% | |
| TCAAATCCCATTCCAACCTC+TGG | + | chr3.2:77954408-77954427 | None:intergenic | 45.0% | |
| ATGGGCGGCGTGTTATATGA+AGG | - | chr3.2:77955545-77955564 | MS.gene057242:intron | 50.0% | |
| CAACTTATGAGCACGCATGC+AGG | - | chr3.2:77954822-77954841 | MS.gene057242:intron | 50.0% | |
| CGAAGCATGTGTGTAGTCTC+TGG | + | chr3.2:77954720-77954739 | None:intergenic | 50.0% | |
| CTTGGGAACTTCATGAAGGG+AGG | - | chr3.2:77955377-77955396 | MS.gene057242:intron | 50.0% | |
| GCAGGGCATAGAGCTAATGT+AGG | - | chr3.2:77954840-77954859 | MS.gene057242:intron | 50.0% | |
| GTTGATTGGAAGCCAGAGGT+TGG | - | chr3.2:77954393-77954412 | MS.gene057242:CDS | 50.0% | |
| TGGAAGCCAGAGGTTGGAAT+GGG | - | chr3.2:77954399-77954418 | MS.gene057242:CDS | 50.0% | |
| TTGGAAGCCAGAGGTTGGAA+TGG | - | chr3.2:77954398-77954417 | MS.gene057242:CDS | 50.0% | |
| ! | GGCATGGTTGGTGCAATATG+TGG | + | chr3.2:77955096-77955115 | None:intergenic | 50.0% |
| GTGATGCCTGAGACTCACCA+TGG | - | chr3.2:77955314-77955333 | MS.gene057242:intron | 55.0% | |
| TGGACAAGGGAAGCCCGTTA+TGG | - | chr3.2:77956071-77956090 | MS.gene057242:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77954378 | 77956265 | 77954378 | ID=MS.gene057242 |
| chr3.2 | mRNA | 77954378 | 77956265 | 77954378 | ID=MS.gene057242.t1;Parent=MS.gene057242 |
| chr3.2 | exon | 77955765 | 77956265 | 77955765 | ID=MS.gene057242.t1.exon1;Parent=MS.gene057242.t1 |
| chr3.2 | CDS | 77955765 | 77956265 | 77955765 | ID=cds.MS.gene057242.t1;Parent=MS.gene057242.t1 |
| chr3.2 | exon | 77954378 | 77954602 | 77954378 | ID=MS.gene057242.t1.exon2;Parent=MS.gene057242.t1 |
| chr3.2 | CDS | 77954378 | 77954602 | 77954378 | ID=cds.MS.gene057242.t1;Parent=MS.gene057242.t1 |
| Gene Sequence |
| Protein sequence |
