Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05741.t1 | XP_013460322.1 | 81.5 | 346 | 9 | 1 | 1 | 291 | 43 | 388 | 3.00E-158 | 567.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05741.t1 | O64815 | 41.6 | 377 | 128 | 8 | 1 | 290 | 41 | 412 | 2.6e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05741.t1 | A0A072UZ42 | 81.5 | 346 | 9 | 1 | 1 | 291 | 43 | 388 | 2.1e-158 | 567.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05741.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05741.t1 | MTR_3g465010 | 81.503 | 346 | 9 | 2 | 1 | 291 | 43 | 388 | 0.0 | 558 |
| MS.gene05741.t1 | MTR_4g095700 | 40.217 | 368 | 140 | 7 | 2 | 290 | 44 | 410 | 5.19e-78 | 243 |
| MS.gene05741.t1 | MTR_5g015810 | 40.443 | 361 | 143 | 7 | 1 | 291 | 45 | 403 | 3.39e-76 | 238 |
| MS.gene05741.t1 | MTR_4g007130 | 40.833 | 360 | 133 | 12 | 1 | 290 | 59 | 408 | 3.37e-68 | 218 |
| MS.gene05741.t1 | MTR_4g122030 | 39.414 | 307 | 158 | 9 | 2 | 290 | 53 | 349 | 3.01e-62 | 200 |
| MS.gene05741.t1 | MTR_5g015810 | 38.024 | 334 | 135 | 7 | 28 | 291 | 1 | 332 | 2.02e-59 | 192 |
| MS.gene05741.t1 | MTR_5g015810 | 37.413 | 286 | 119 | 5 | 65 | 291 | 2 | 286 | 3.86e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05741.t1 | AT2G30090 | 46.875 | 352 | 112 | 8 | 1 | 291 | 49 | 386 | 6.18e-94 | 283 |
| MS.gene05741.t1 | AT5G67430 | 47.034 | 236 | 109 | 4 | 1 | 223 | 39 | 271 | 5.77e-65 | 209 |
| MS.gene05741.t1 | AT4G37580 | 49.327 | 223 | 89 | 4 | 1 | 199 | 38 | 260 | 1.25e-61 | 200 |
| MS.gene05741.t1 | AT4G37580 | 46.392 | 97 | 48 | 2 | 194 | 290 | 310 | 402 | 6.96e-21 | 92.0 |
| MS.gene05741.t1 | AT2G23060 | 47.845 | 232 | 86 | 5 | 1 | 199 | 41 | 270 | 3.00e-61 | 200 |
| MS.gene05741.t1 | AT2G23060 | 48.454 | 97 | 46 | 2 | 194 | 290 | 320 | 412 | 2.18e-22 | 96.3 |
| MS.gene05741.t1 | AT5G67430 | 44.498 | 209 | 100 | 4 | 28 | 223 | 1 | 206 | 1.74e-50 | 169 |
| MS.gene05741.t1 | AT4G37580 | 47.475 | 198 | 83 | 3 | 23 | 199 | 6 | 203 | 4.27e-50 | 169 |
| MS.gene05741.t1 | AT4G37580 | 46.392 | 97 | 48 | 2 | 194 | 290 | 253 | 345 | 3.97e-21 | 92.0 |
| MS.gene05741.t1 | AT2G23060 | 48.175 | 137 | 59 | 2 | 74 | 199 | 1 | 136 | 2.81e-35 | 128 |
| MS.gene05741.t1 | AT2G23060 | 48.454 | 97 | 46 | 2 | 194 | 290 | 186 | 278 | 4.16e-23 | 96.3 |
Find 66 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAGATGATATTAATAT+TGG | 0.198020 | 3.1:-48830501 | MS.gene05741:CDS |
| CAAACAACATTGAAATATTA+AGG | 0.212391 | 3.1:-48830644 | MS.gene05741:CDS |
| ATTAAGGAATAAATTAAGTT+TGG | 0.224040 | 3.1:-48830541 | MS.gene05741:CDS |
| AGCTCTTGTAGGTGGGATTT+TGG | 0.230695 | 3.1:+48830035 | None:intergenic |
| TTCACTAGCTTCCCTGAAAA+TGG | 0.245411 | 3.1:+48830258 | None:intergenic |
| AATATATTTCCTATATCATT+AGG | 0.292377 | 3.1:+48830561 | None:intergenic |
| CTATTTGGTACTTGTCCATT+AGG | 0.309103 | 3.1:+48830477 | None:intergenic |
| CTAAGCATAGCCCAACTATT+TGG | 0.312703 | 3.1:+48830462 | None:intergenic |
| TTAAGGAATAAATTAAGTTT+GGG | 0.313536 | 3.1:-48830540 | MS.gene05741:CDS |
| ATGATATAGGAAATATATTA+AGG | 0.325837 | 3.1:-48830557 | MS.gene05741:CDS |
| TTTATGCACCACAAATCTTC+AGG | 0.326456 | 3.1:+48830105 | None:intergenic |
| AGGACATCCACCAAAGGATT+TGG | 0.330187 | 3.1:-48830910 | MS.gene05741:CDS |
| ATGTCAATTTGTGCACAATA+TGG | 0.349042 | 3.1:-48830229 | MS.gene05741:CDS |
| ATCATACTTTAAACCTCTCT+TGG | 0.350495 | 3.1:+48830000 | None:intergenic |
| GATATTAATATTGGGCCTAA+TGG | 0.352217 | 3.1:-48830492 | MS.gene05741:CDS |
| AGTTTAACTACACAAAGTTT+AGG | 0.361536 | 3.1:-48830716 | MS.gene05741:CDS |
| ATAAAAGTTGTAACTGTTCA+AGG | 0.367914 | 3.1:-48830930 | MS.gene05741:CDS |
| TTAAAGATGATATTAATATT+GGG | 0.372605 | 3.1:-48830500 | MS.gene05741:CDS |
| TAGGGTATGCCCTAGGCTTA+AGG | 0.390017 | 3.1:-48830881 | MS.gene05741:CDS |
| TCTCCACATCATAGAAGAAA+AGG | 0.405669 | 3.1:-48830855 | MS.gene05741:CDS |
| ATCACTATATAGAAGATTCA+TGG | 0.408266 | 3.1:-48830601 | MS.gene05741:CDS |
| AAGATTATTGTGACTGAAGT+TGG | 0.419377 | 3.1:-48830180 | MS.gene05741:CDS |
| TCTCATGCCCTGAAGATTTG+TGG | 0.422983 | 3.1:-48830113 | MS.gene05741:CDS |
| ATTCTTCTAATGTTCTTACT+AGG | 0.427168 | 3.1:+48830820 | None:intergenic |
| TGAAGATTTGTGGTGCATAA+AGG | 0.428454 | 3.1:-48830103 | MS.gene05741:CDS |
| ATGGACAAGTACCAAATAGT+TGG | 0.433424 | 3.1:-48830473 | MS.gene05741:CDS |
| CTATGGGTGACCCCATTTGT+AGG | 0.434012 | 3.1:-48831524 | MS.gene05741:CDS |
| ATAAATTAAGTTTGGGGACA+TGG | 0.434467 | 3.1:-48830533 | MS.gene05741:CDS |
| AGCAGAGTTGGACAATGAAT+TGG | 0.436658 | 3.1:-48830973 | MS.gene05741:CDS |
| GAATTGGTTGGTGTCATTCA+AGG | 0.455654 | 3.1:-48830957 | MS.gene05741:CDS |
| ACTGTTTCGAATCCTACAAA+TGG | 0.464122 | 3.1:+48831512 | None:intergenic |
| GTATGCATAGTCCACATCAT+TGG | 0.466746 | 3.1:+48830788 | None:intergenic |
| TCATACTTTAAACCTCTCTT+GGG | 0.469463 | 3.1:+48830001 | None:intergenic |
| TTTAATGAGTGATGGTTCAC+AGG | 0.470283 | 3.1:+48830672 | None:intergenic |
| AGGGTATGCCCTAGGCTTAA+GGG | 0.471150 | 3.1:-48830880 | MS.gene05741:CDS |
| CTGTTTCGAATCCTACAAAT+GGG | 0.471230 | 3.1:+48831513 | None:intergenic |
| GTTGGGCTATGCTTAGTGTA+TGG | 0.480182 | 3.1:-48830455 | MS.gene05741:CDS |
| TGGACAAGTACCAAATAGTT+GGG | 0.499070 | 3.1:-48830472 | MS.gene05741:CDS |
| TCACTATATAGAAGATTCAT+GGG | 0.512195 | 3.1:-48830600 | MS.gene05741:CDS |
| TAGTAAGAACATTAGAAGAA+TGG | 0.512758 | 3.1:-48830818 | MS.gene05741:CDS |
| CCAAAGGATTTGGCAAAAGT+AGG | 0.514069 | 3.1:-48830900 | MS.gene05741:CDS |
| ACAGGGTTAACAAGAATAGA+TGG | 0.514152 | 3.1:+48830690 | None:intergenic |
| TTATGCACCACAAATCTTCA+GGG | 0.517119 | 3.1:+48830106 | None:intergenic |
| ATATACCAGCATCATGTACA+TGG | 0.524771 | 3.1:+48831488 | None:intergenic |
| CAAAGGATTTGGCAAAAGTA+GGG | 0.531057 | 3.1:-48830899 | MS.gene05741:CDS |
| CTCCACATCATAGAAGAAAA+GGG | 0.538419 | 3.1:-48830854 | MS.gene05741:CDS |
| ATGGTTCATTTCCAATGATG+TGG | 0.539215 | 3.1:-48830799 | MS.gene05741:CDS |
| GTGGAGATACCCTTAAGCCT+AGG | 0.544733 | 3.1:+48830871 | None:intergenic |
| ATGCTTAGTGTATGGAATAG+TGG | 0.546161 | 3.1:-48830447 | MS.gene05741:intron |
| ATTAAGTTTGGGGACATGGA+TGG | 0.547711 | 3.1:-48830529 | MS.gene05741:CDS |
| CATCATAGAAGAAAAGGGAT+TGG | 0.551271 | 3.1:-48830849 | MS.gene05741:CDS |
| TGGATGTTAGGTAGCAGAGT+TGG | 0.556839 | 3.1:-48830985 | MS.gene05741:intron |
| TAAGGAATAAATTAAGTTTG+GGG | 0.567784 | 3.1:-48830539 | MS.gene05741:CDS |
| CAGTCCCATGTACATGATGC+TGG | 0.573817 | 3.1:-48831493 | MS.gene05741:intron |
| ATTATTGTGACTGAAGTTGG+AGG | 0.580952 | 3.1:-48830177 | MS.gene05741:CDS |
| TGGAGATACCCTTAAGCCTA+GGG | 0.588065 | 3.1:+48830872 | None:intergenic |
| GCAAAAGTAGGGTATGCCCT+AGG | 0.599208 | 3.1:-48830888 | MS.gene05741:CDS |
| TGATGTGGACTATGCATACA+TGG | 0.605779 | 3.1:-48830784 | MS.gene05741:CDS |
| TCAATCATCACATTCCACAT+TGG | 0.613936 | 3.1:-48830143 | MS.gene05741:CDS |
| TTAATGAGTGATGGTTCACA+GGG | 0.619510 | 3.1:+48830673 | None:intergenic |
| CATGAGAGCAATTTCCAATG+TGG | 0.669240 | 3.1:+48830129 | None:intergenic |
| TATACCAGCATCATGTACAT+GGG | 0.680033 | 3.1:+48831489 | None:intergenic |
| TGTTCAAGGACATCCACCAA+AGG | 0.683056 | 3.1:-48830916 | MS.gene05741:CDS |
| GAGTTGGACAATGAATTGGT+TGG | 0.721734 | 3.1:-48830969 | MS.gene05741:CDS |
| TGTTTCGAATCCTACAAATG+GGG | 0.724283 | 3.1:+48831514 | None:intergenic |
| CACTATATAGAAGATTCATG+GGG | 0.732329 | 3.1:-48830599 | MS.gene05741:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAAAAGAAAAAAAA+AGG | + | chr3.1:48830117-48830136 | None:intergenic | 10.0% |
| !! | AAAGAAAAAAGAAAAAAAAA+GGG | + | chr3.1:48830116-48830135 | None:intergenic | 10.0% |
| !! | TTAAAGATGATATTAATATT+GGG | - | chr3.1:48831030-48831049 | MS.gene05741:intron | 10.0% |
| !! | TTTAAAGATGATATTAATAT+TGG | - | chr3.1:48831029-48831048 | MS.gene05741:intron | 10.0% |
| !! | AAAATCTTCAATATATATTG+CGG | + | chr3.1:48830343-48830362 | None:intergenic | 15.0% |
| !! | AATATATTTCCTATATCATT+AGG | + | chr3.1:48830972-48830991 | None:intergenic | 15.0% |
| !! | ACATAAAATAAAATCCAAAA+GGG | + | chr3.1:48831232-48831251 | None:intergenic | 15.0% |
| !! | ATGATATAGGAAATATATTA+AGG | - | chr3.1:48830973-48830992 | MS.gene05741:CDS | 15.0% |
| !! | ATTAAGGAATAAATTAAGTT+TGG | - | chr3.1:48830989-48831008 | MS.gene05741:intron | 15.0% |
| !! | TACATAAAATAAAATCCAAA+AGG | + | chr3.1:48831233-48831252 | None:intergenic | 15.0% |
| !! | TTAAGGAATAAATTAAGTTT+GGG | - | chr3.1:48830990-48831009 | MS.gene05741:intron | 15.0% |
| !!! | TTTGGATTTTATTTTATGTA+TGG | - | chr3.1:48831233-48831252 | MS.gene05741:intron | 15.0% |
| !! | CAAACAACATTGAAATATTA+AGG | - | chr3.1:48830886-48830905 | MS.gene05741:CDS | 20.0% |
| !! | TAAGGAATAAATTAAGTTTG+GGG | - | chr3.1:48830991-48831010 | MS.gene05741:intron | 20.0% |
| !!! | TCTAGTACAATTTTAAATTG+TGG | - | chr3.1:48830176-48830195 | MS.gene05741:CDS | 20.0% |
| !!! | TCTTTTTTCTTTTCCTTTTA+TGG | - | chr3.1:48830124-48830143 | MS.gene05741:CDS | 20.0% |
| !!! | TGCATTTTACTATAATAGAA+AGG | - | chr3.1:48830398-48830417 | MS.gene05741:intron | 20.0% |
| ! | AAATTGTACTAGAAAGAACA+AGG | + | chr3.1:48830169-48830188 | None:intergenic | 25.0% |
| ! | AGTTTAACTACACAAAGTTT+AGG | - | chr3.1:48830814-48830833 | MS.gene05741:CDS | 25.0% |
| ! | ATAAAAGTTGTAACTGTTCA+AGG | - | chr3.1:48830600-48830619 | MS.gene05741:CDS | 25.0% |
| ! | ATCACTATATAGAAGATTCA+TGG | - | chr3.1:48830929-48830948 | MS.gene05741:CDS | 25.0% |
| ! | ATTCTTCTAATGTTCTTACT+AGG | + | chr3.1:48830713-48830732 | None:intergenic | 25.0% |
| ! | GTGTATAACAAACAACAAAA+AGG | + | chr3.1:48831140-48831159 | None:intergenic | 25.0% |
| ! | TAACTTCTTAATTGGATGTT+AGG | - | chr3.1:48830533-48830552 | MS.gene05741:CDS | 25.0% |
| ! | TAGTAAGAACATTAGAAGAA+TGG | - | chr3.1:48830712-48830731 | MS.gene05741:CDS | 25.0% |
| ! | TCACTATATAGAAGATTCAT+GGG | - | chr3.1:48830930-48830949 | MS.gene05741:CDS | 25.0% |
| ! | TTAAAGAAATCAGGTAAAGT+AGG | + | chr3.1:48831209-48831228 | None:intergenic | 25.0% |
| !! | AAAGAACAAGGAGTATAAAA+TGG | + | chr3.1:48830157-48830176 | None:intergenic | 25.0% |
| !! | AAAGTAGGCAATTTTAAACA+TGG | + | chr3.1:48831194-48831213 | None:intergenic | 25.0% |
| !! | AAGAACAAGGAGTATAAAAT+GGG | + | chr3.1:48830156-48830175 | None:intergenic | 25.0% |
| !! | AAGTAGGCAATTTTAAACAT+GGG | + | chr3.1:48831193-48831212 | None:intergenic | 25.0% |
| !! | ACAATTTTAAATTGTGGTTG+CGG | - | chr3.1:48830182-48830201 | MS.gene05741:CDS | 25.0% |
| !! | GAGATATTCAAGTTAAAGAT+AGG | - | chr3.1:48831107-48831126 | MS.gene05741:intron | 25.0% |
| !! | TTGAGATTTTTAATGAGTGA+TGG | + | chr3.1:48830869-48830888 | None:intergenic | 25.0% |
| !!! | GAAAACATGGTTTTAAATTG+TGG | + | chr3.1:48830486-48830505 | None:intergenic | 25.0% |
| !!! | GAGTTTTTTCCTAATGATAT+AGG | - | chr3.1:48830960-48830979 | MS.gene05741:CDS | 25.0% |
| !!! | GTTTGTTATACACAAAAAGT+TGG | - | chr3.1:48831147-48831166 | MS.gene05741:intron | 25.0% |
| !!! | TACATTTTGATGCAATATGA+AGG | + | chr3.1:48830220-48830239 | None:intergenic | 25.0% |
| AAATGGGATTGATCCATAAA+AGG | + | chr3.1:48830140-48830159 | None:intergenic | 30.0% | |
| AAGATTATTGTGACTGAAGT+TGG | - | chr3.1:48831350-48831369 | MS.gene05741:intron | 30.0% | |
| ACATCCAATTAAGAAGTTAG+TGG | + | chr3.1:48830532-48830551 | None:intergenic | 30.0% | |
| ATAAATTAAGTTTGGGGACA+TGG | - | chr3.1:48830997-48831016 | MS.gene05741:intron | 30.0% | |
| ATCATTAGGAAAAAACTCTG+TGG | + | chr3.1:48830958-48830977 | None:intergenic | 30.0% | |
| ATGTCAATTTGTGCACAATA+TGG | - | chr3.1:48831301-48831320 | MS.gene05741:intron | 30.0% | |
| CACTATATAGAAGATTCATG+GGG | - | chr3.1:48830931-48830950 | MS.gene05741:CDS | 30.0% | |
| GATATTAATATTGGGCCTAA+TGG | - | chr3.1:48831038-48831057 | MS.gene05741:intron | 30.0% | |
| GATCAAAGAACTAGAAAACA+TGG | + | chr3.1:48830499-48830518 | None:intergenic | 30.0% | |
| TCTCATAACCCTTTATATTG+CGG | - | chr3.1:48830276-48830295 | MS.gene05741:intron | 30.0% | |
| ! | ACTGAAGTTTAAAACCATTG+TGG | + | chr3.1:48830302-48830321 | None:intergenic | 30.0% |
| !! | ATAAAGGCACTGAAAAATGA+AGG | - | chr3.1:48831443-48831462 | MS.gene05741:intron | 30.0% |
| ACAGGGTTAACAAGAATAGA+TGG | + | chr3.1:48830843-48830862 | None:intergenic | 35.0% | |
| ACTGTTTCGAATCCTACAAA+TGG | + | chr3.1:48830021-48830040 | None:intergenic | 35.0% | |
| ATATACCAGCATCATGTACA+TGG | + | chr3.1:48830045-48830064 | None:intergenic | 35.0% | |
| ATGCTTAGTGTATGGAATAG+TGG | - | chr3.1:48831083-48831102 | MS.gene05741:intron | 35.0% | |
| ATGGACAAGTACCAAATAGT+TGG | - | chr3.1:48831057-48831076 | MS.gene05741:intron | 35.0% | |
| ATGGTTCATTTCCAATGATG+TGG | - | chr3.1:48830731-48830750 | MS.gene05741:CDS | 35.0% | |
| ATGTATGGTGTGTATCATGA+AGG | - | chr3.1:48831248-48831267 | MS.gene05741:intron | 35.0% | |
| ATTATTGTGACTGAAGTTGG+AGG | - | chr3.1:48831353-48831372 | MS.gene05741:intron | 35.0% | |
| CAAAGGATTTGGCAAAAGTA+GGG | - | chr3.1:48830631-48830650 | MS.gene05741:CDS | 35.0% | |
| CATCATAGAAGAAAAGGGAT+TGG | - | chr3.1:48830681-48830700 | MS.gene05741:CDS | 35.0% | |
| CCAAAAGGGTTAAAGAAATC+AGG | + | chr3.1:48831218-48831237 | None:intergenic | 35.0% | |
| CTATTTGGTACTTGTCCATT+AGG | + | chr3.1:48831056-48831075 | None:intergenic | 35.0% | |
| CTCCACATCATAGAAGAAAA+GGG | - | chr3.1:48830676-48830695 | MS.gene05741:CDS | 35.0% | |
| CTGTTTCGAATCCTACAAAT+GGG | + | chr3.1:48830020-48830039 | None:intergenic | 35.0% | |
| TATACCAGCATCATGTACAT+GGG | + | chr3.1:48830044-48830063 | None:intergenic | 35.0% | |
| TCAATCATCACATTCCACAT+TGG | - | chr3.1:48831387-48831406 | MS.gene05741:intron | 35.0% | |
| TCAGTTTACAACTGCAAATG+TGG | - | chr3.1:48830317-48830336 | MS.gene05741:intron | 35.0% | |
| TCCAATTAAGAAGTTAGTGG+TGG | + | chr3.1:48830529-48830548 | None:intergenic | 35.0% | |
| TCCACCACTAACTTCTTAAT+TGG | - | chr3.1:48830525-48830544 | MS.gene05741:CDS | 35.0% | |
| TCTACAAAAAGAGCTCTTGT+AGG | + | chr3.1:48831509-48831528 | None:intergenic | 35.0% | |
| TCTCCACATCATAGAAGAAA+AGG | - | chr3.1:48830675-48830694 | MS.gene05741:CDS | 35.0% | |
| TGAAGATTTGTGGTGCATAA+AGG | - | chr3.1:48831427-48831446 | MS.gene05741:intron | 35.0% | |
| TGGACAAGTACCAAATAGTT+GGG | - | chr3.1:48831058-48831077 | MS.gene05741:intron | 35.0% | |
| TGTATGGTGTGTATCATGAA+GGG | - | chr3.1:48831249-48831268 | MS.gene05741:intron | 35.0% | |
| TGTTTCGAATCCTACAAATG+GGG | + | chr3.1:48830019-48830038 | None:intergenic | 35.0% | |
| TTAATGAGTGATGGTTCACA+GGG | + | chr3.1:48830860-48830879 | None:intergenic | 35.0% | |
| TTATGCACCACAAATCTTCA+GGG | + | chr3.1:48831427-48831446 | None:intergenic | 35.0% | |
| TTTAATGAGTGATGGTTCAC+AGG | + | chr3.1:48830861-48830880 | None:intergenic | 35.0% | |
| TTTATGCACCACAAATCTTC+AGG | + | chr3.1:48831428-48831447 | None:intergenic | 35.0% | |
| ! | ATCCCTTTTCTTCTATGATG+TGG | + | chr3.1:48830681-48830700 | None:intergenic | 35.0% |
| ! | CCTGATTTCTTTAACCCTTT+TGG | - | chr3.1:48831215-48831234 | MS.gene05741:intron | 35.0% |
| !!! | GCACTTACGGTTTTAAATTG+CGG | + | chr3.1:48830442-48830461 | None:intergenic | 35.0% |
| ACAAAAAGAGCTCTTGTAGG+TGG | + | chr3.1:48831506-48831525 | None:intergenic | 40.0% | |
| AGCAGAGTTGGACAATGAAT+TGG | - | chr3.1:48830557-48830576 | MS.gene05741:CDS | 40.0% | |
| ATTAAGTTTGGGGACATGGA+TGG | - | chr3.1:48831001-48831020 | MS.gene05741:intron | 40.0% | |
| CAAAAAGAGCTCTTGTAGGT+GGG | + | chr3.1:48831505-48831524 | None:intergenic | 40.0% | |
| CATGAGAGCAATTTCCAATG+TGG | + | chr3.1:48831404-48831423 | None:intergenic | 40.0% | |
| CATTGTGGCCGCAATATAAA+GGG | + | chr3.1:48830287-48830306 | None:intergenic | 40.0% | |
| CCAAAGGATTTGGCAAAAGT+AGG | - | chr3.1:48830630-48830649 | MS.gene05741:CDS | 40.0% | |
| CTAAGCATAGCCCAACTATT+TGG | + | chr3.1:48831071-48831090 | None:intergenic | 40.0% | |
| GAGTTGGACAATGAATTGGT+TGG | - | chr3.1:48830561-48830580 | MS.gene05741:CDS | 40.0% | |
| GTATGCATAGTCCACATCAT+TGG | + | chr3.1:48830745-48830764 | None:intergenic | 40.0% | |
| ! | ACTTTTGCCAAATCCTTTGG+TGG | + | chr3.1:48830630-48830649 | None:intergenic | 40.0% |
| ! | TCTTTTTGTAGACCCAAGAG+AGG | - | chr3.1:48831517-48831536 | MS.gene05741:CDS | 40.0% |
| ! | TGATGTGGACTATGCATACA+TGG | - | chr3.1:48830746-48830765 | MS.gene05741:CDS | 40.0% |
| ! | TTCACTAGCTTCCCTGAAAA+TGG | + | chr3.1:48831275-48831294 | None:intergenic | 40.0% |
| !! | ATCATGAAGGGCCATTTTCA+GGG | - | chr3.1:48831261-48831280 | MS.gene05741:intron | 40.0% |
| !! | CCTACTTTTGCCAAATCCTT+TGG | + | chr3.1:48830633-48830652 | None:intergenic | 40.0% |
| !! | GAATTGGTTGGTGTCATTCA+AGG | - | chr3.1:48830573-48830592 | MS.gene05741:CDS | 40.0% |
| !! | TATCATGAAGGGCCATTTTC+AGG | - | chr3.1:48831260-48831279 | MS.gene05741:intron | 40.0% |
| AGGACATCCACCAAAGGATT+TGG | - | chr3.1:48830620-48830639 | MS.gene05741:CDS | 45.0% | |
| CCATTGTGGCCGCAATATAA+AGG | + | chr3.1:48830288-48830307 | None:intergenic | 45.0% | |
| CCTTTATATTGCGGCCACAA+TGG | - | chr3.1:48830285-48830304 | MS.gene05741:intron | 45.0% | |
| GTTGGGCTATGCTTAGTGTA+TGG | - | chr3.1:48831075-48831094 | MS.gene05741:intron | 45.0% | |
| TACAGTTGTGGCTGCACTTA+CGG | + | chr3.1:48830455-48830474 | None:intergenic | 45.0% | |
| TCTCATGCCCTGAAGATTTG+TGG | - | chr3.1:48831417-48831436 | MS.gene05741:intron | 45.0% | |
| TGCAGCCACAACTGTATATG+CGG | - | chr3.1:48830459-48830478 | MS.gene05741:CDS | 45.0% | |
| TGGAGATACCCTTAAGCCTA+GGG | + | chr3.1:48830661-48830680 | None:intergenic | 45.0% | |
| TGGATGTTAGGTAGCAGAGT+TGG | - | chr3.1:48830545-48830564 | MS.gene05741:CDS | 45.0% | |
| TGTTCAAGGACATCCACCAA+AGG | - | chr3.1:48830614-48830633 | MS.gene05741:CDS | 45.0% | |
| ! | AGCTCTTGTAGGTGGGATTT+TGG | + | chr3.1:48831498-48831517 | None:intergenic | 45.0% |
| AGGGTATGCCCTAGGCTTAA+GGG | - | chr3.1:48830650-48830669 | MS.gene05741:CDS | 50.0% | |
| CAGTCCCATGTACATGATGC+TGG | - | chr3.1:48830037-48830056 | MS.gene05741:CDS | 50.0% | |
| GCAAAAGTAGGGTATGCCCT+AGG | - | chr3.1:48830642-48830661 | MS.gene05741:CDS | 50.0% | |
| GTGGAGATACCCTTAAGCCT+AGG | + | chr3.1:48830662-48830681 | None:intergenic | 50.0% | |
| GTGGTCCGCATATACAGTTG+TGG | + | chr3.1:48830467-48830486 | None:intergenic | 50.0% | |
| TAGGGTATGCCCTAGGCTTA+AGG | - | chr3.1:48830649-48830668 | MS.gene05741:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 48830008 | 48831544 | 48830008 | ID=MS.gene05741 |
| chr3.1 | mRNA | 48830008 | 48831544 | 48830008 | ID=MS.gene05741.t1;Parent=MS.gene05741 |
| chr3.1 | exon | 48831494 | 48831544 | 48831494 | ID=MS.gene05741.t1.exon1;Parent=MS.gene05741.t1 |
| chr3.1 | CDS | 48831494 | 48831544 | 48831494 | ID=cds.MS.gene05741.t1;Parent=MS.gene05741.t1 |
| chr3.1 | exon | 48830448 | 48830997 | 48830448 | ID=MS.gene05741.t1.exon2;Parent=MS.gene05741.t1 |
| chr3.1 | CDS | 48830448 | 48830997 | 48830448 | ID=cds.MS.gene05741.t1;Parent=MS.gene05741.t1 |
| chr3.1 | exon | 48830008 | 48830282 | 48830008 | ID=MS.gene05741.t1.exon3;Parent=MS.gene05741.t1 |
| chr3.1 | CDS | 48830008 | 48830282 | 48830008 | ID=cds.MS.gene05741.t1;Parent=MS.gene05741.t1 |
| Gene Sequence |
| Protein sequence |
