Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05746.t1 | KEH34360.1 | 79.7 | 551 | 108 | 3 | 1 | 550 | 1 | 548 | 2.10E-157 | 565.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05746.t1 | A0A072V894 | 79.7 | 551 | 108 | 3 | 1 | 550 | 1 | 548 | 1.5e-157 | 565.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05746.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05746.t1 | MTR_3g465110 | 88.095 | 546 | 59 | 5 | 1 | 544 | 1 | 542 | 0.0 | 922 |
| MS.gene05746.t1 | MTR_3g104830 | 50.808 | 557 | 193 | 13 | 7 | 543 | 2 | 497 | 4.59e-168 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05746.t1 | AT5G16100 | 25.253 | 297 | 178 | 6 | 267 | 528 | 153 | 440 | 1.13e-23 | 104 |
Find 110 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAGTCCATGGTAATTT+TGG | 0.212819 | 3.1:-48889889 | None:intergenic |
| GGGTCCATTATTGCTATTAA+TGG | 0.250205 | 3.1:-48889864 | None:intergenic |
| ATTGCTATTAATGGACAAAT+TGG | 0.250376 | 3.1:-48889855 | None:intergenic |
| CATGGACATGGTAGCAATAT+TGG | 0.250557 | 3.1:+48890076 | MS.gene05746:CDS |
| CAAAATAATAATGTTTCATT+TGG | 0.253731 | 3.1:+48890430 | MS.gene05746:CDS |
| TTGTCCATTAATAGCAATAA+TGG | 0.260366 | 3.1:+48889860 | MS.gene05746:CDS |
| GGTCCTATCGATAATTATTC+AGG | 0.280430 | 3.1:+48891065 | MS.gene05746:CDS |
| TGGATTGCGGTTGCTCAAAT+TGG | 0.290960 | 3.1:-48889831 | None:intergenic |
| AGACGAATCATTTACTCTAA+TGG | 0.306498 | 3.1:+48890580 | MS.gene05746:CDS |
| ATTGTTGGGCCTCCATTAAC+AGG | 0.321028 | 3.1:-48890765 | None:intergenic |
| TATGAAAATCTTGAGATTCA+TGG | 0.321881 | 3.1:+48890702 | MS.gene05746:CDS |
| CAAGAGCAAGTTGGTGAGAT+TGG | 0.322818 | 3.1:+48891626 | MS.gene05746:CDS |
| AACGTTGCACCTTCGATACT+TGG | 0.325070 | 3.1:-48889683 | None:intergenic |
| CGCCATGTGACACCTGTTAA+TGG | 0.325291 | 3.1:+48890753 | MS.gene05746:CDS |
| TTGGATTGATGATATTAATA+TGG | 0.329852 | 3.1:+48891040 | MS.gene05746:CDS |
| CACACTACTGCTGCTGATAA+TGG | 0.341115 | 3.1:-48892264 | None:intergenic |
| CTCTTTGCACCGGATATGAT+TGG | 0.357597 | 3.1:+48891021 | MS.gene05746:CDS |
| CTTGAGATTCATGGAAGCTT+GGG | 0.357672 | 3.1:+48890711 | MS.gene05746:CDS |
| CATGCTTACAGATGAGATAA+TGG | 0.387376 | 3.1:+48891589 | MS.gene05746:intron |
| GATATTAAATTGTAATTGAA+TGG | 0.400636 | 3.1:-48890250 | None:intergenic |
| TGATGAAATAAAGAACTTCC+TGG | 0.412875 | 3.1:+48890926 | MS.gene05746:CDS |
| CTATTAATGGACAAATTGGT+TGG | 0.419381 | 3.1:-48889851 | None:intergenic |
| AGCAATACTTGAAAATCAAT+TGG | 0.419584 | 3.1:+48892111 | MS.gene05746:CDS |
| TGGAATAAGTAACTTTGAAG+TGG | 0.427695 | 3.1:+48890450 | MS.gene05746:CDS |
| CGATTACTTTCATCTACCTA+TGG | 0.438638 | 3.1:+48891887 | MS.gene05746:CDS |
| TGTATATATCATTTAGTGTA+GGG | 0.456932 | 3.1:-48889757 | None:intergenic |
| CTTCCTGGATCAGTATTGTA+TGG | 0.458075 | 3.1:+48890941 | MS.gene05746:CDS |
| CAATCGTTCGATCAATTGTT+GGG | 0.465946 | 3.1:-48890779 | None:intergenic |
| TCTTGAGATTCATGGAAGCT+TGG | 0.468339 | 3.1:+48890710 | MS.gene05746:CDS |
| CACCAAAATTACCATGGACT+TGG | 0.468970 | 3.1:+48889887 | MS.gene05746:CDS |
| AGATGTGCACAATTTACATT+GGG | 0.476510 | 3.1:+48891855 | MS.gene05746:CDS |
| TCAATCGTTCGATCAATTGT+TGG | 0.476535 | 3.1:-48890780 | None:intergenic |
| ATTCAGTTGTGGCATTGCAT+TGG | 0.484885 | 3.1:-48890116 | None:intergenic |
| CAACAAAATTACCATGGACT+TGG | 0.485409 | 3.1:+48889971 | MS.gene05746:CDS |
| GGAAGTTCTTTATTTCATCA+AGG | 0.486733 | 3.1:-48890923 | None:intergenic |
| GGAATAAGTAACTTTGAAGT+GGG | 0.489373 | 3.1:+48890451 | MS.gene05746:CDS |
| TCAATTGGACAGGCAAGATC+CGG | 0.489751 | 3.1:+48892126 | MS.gene05746:CDS |
| ATCATCAATCCAATCATATC+CGG | 0.493113 | 3.1:-48891030 | None:intergenic |
| TGTATGGAACATAATTCAGC+AGG | 0.494565 | 3.1:+48890957 | MS.gene05746:CDS |
| TTGATCAAGTGCCAACGCTT+CGG | 0.497530 | 3.1:-48890509 | None:intergenic |
| CCATGGCATTCAACATGGAC+GGG | 0.499629 | 3.1:+48890213 | MS.gene05746:CDS |
| CCAATGGTTCAAAATCAACT+TGG | 0.499953 | 3.1:+48890403 | MS.gene05746:CDS |
| CCATGTCCATGTTGAATACC+AGG | 0.503325 | 3.1:-48890355 | None:intergenic |
| GTAGAACAAAATTAAGAAGA+TGG | 0.504860 | 3.1:+48891964 | MS.gene05746:CDS |
| CTAGCCGCTGCTTCTTCCAT+AGG | 0.508372 | 3.1:-48891903 | None:intergenic |
| AGAGTCCTTTCCCTTGTCGC+CGG | 0.514274 | 3.1:-48892145 | None:intergenic |
| ATGTATATATCATTTAGTGT+AGG | 0.514577 | 3.1:-48889758 | None:intergenic |
| AAGATGTGCACAATTTACAT+TGG | 0.515263 | 3.1:+48891854 | MS.gene05746:CDS |
| CGATTACAATTTAGTATCGC+CGG | 0.515726 | 3.1:+48890183 | MS.gene05746:CDS |
| AAGCGTTGGCACTTGATCAA+TGG | 0.517228 | 3.1:+48890512 | MS.gene05746:CDS |
| AAGAAGATGGCCACACAGAA+AGG | 0.518680 | 3.1:+48891977 | MS.gene05746:CDS |
| GATTGATGATATTAATATGG+AGG | 0.518874 | 3.1:+48891043 | MS.gene05746:CDS |
| TACTTGAAAATCAATTGGAC+AGG | 0.519249 | 3.1:+48892116 | MS.gene05746:CDS |
| ACCATGGCATTCAACATGGA+CGG | 0.528445 | 3.1:+48890212 | MS.gene05746:CDS |
| GTTCCATACAATACTGATCC+AGG | 0.531567 | 3.1:-48890944 | None:intergenic |
| CACCAGAGTGTGGTTGAACA+TGG | 0.539370 | 3.1:+48890058 | MS.gene05746:CDS |
| GCGTTCAACACGGACGGAGT+AGG | 0.542691 | 3.1:+48890146 | MS.gene05746:CDS |
| ATGTCACAACAAAATGATCC+TGG | 0.543235 | 3.1:+48890337 | MS.gene05746:CDS |
| GCGACATAATTCAACGCAGT+TGG | 0.549096 | 3.1:-48892223 | None:intergenic |
| TCATGGTATTCAACAAGGGC+AGG | 0.551808 | 3.1:+48890285 | MS.gene05746:CDS |
| AAGATCCGGCGACAAGGGAA+AGG | 0.552910 | 3.1:+48892140 | MS.gene05746:CDS |
| ATATCACCAGAAAATGATCA+TGG | 0.553458 | 3.1:+48890268 | MS.gene05746:CDS |
| CTCCATTAACAGGTGTCACA+TGG | 0.555997 | 3.1:-48890755 | None:intergenic |
| CCCGTCCATGTTGAATGCCA+TGG | 0.556371 | 3.1:-48890213 | None:intergenic |
| GACTTGGAATACTTCAACGA+GGG | 0.562322 | 3.1:+48889903 | MS.gene05746:CDS |
| CAGGCAAGATCCGGCGACAA+GGG | 0.569973 | 3.1:+48892135 | MS.gene05746:CDS |
| TACATGAATAACAATAACAA+TGG | 0.572167 | 3.1:+48889776 | MS.gene05746:CDS |
| AATGACCATGGCATTCAACA+TGG | 0.573215 | 3.1:+48890208 | MS.gene05746:CDS |
| ATTGATGATATTAATATGGA+GGG | 0.585774 | 3.1:+48891044 | MS.gene05746:CDS |
| GGTATTCAACAAGGGCAGGA+TGG | 0.589069 | 3.1:+48890289 | MS.gene05746:CDS |
| GATACTAAATTGTAATCGAA+TGG | 0.589440 | 3.1:-48890178 | None:intergenic |
| TCCGTCCGTGTTGAACGCCA+TGG | 0.589945 | 3.1:-48890141 | None:intergenic |
| GTCCATGTTCAACCACACTC+TGG | 0.590094 | 3.1:-48890060 | None:intergenic |
| GAGCAAGAGCAAGAGCAAGT+TGG | 0.592584 | 3.1:+48891617 | MS.gene05746:CDS |
| TTGAGATTCATGGAAGCTTG+GGG | 0.597747 | 3.1:+48890712 | MS.gene05746:CDS |
| AATGATCATGGTATTCAACA+AGG | 0.598505 | 3.1:+48890280 | MS.gene05746:CDS |
| GTAGAAGTATTCCAAGTCCA+TGG | 0.598550 | 3.1:-48889982 | None:intergenic |
| CCTGGTATTCAACATGGACA+TGG | 0.598984 | 3.1:+48890355 | MS.gene05746:CDS |
| GTTGAAGTATTCCAAGTCCA+TGG | 0.599108 | 3.1:-48889898 | None:intergenic |
| ACAGGCAAGATCCGGCGACA+AGG | 0.599603 | 3.1:+48892134 | MS.gene05746:CDS |
| ACGCCATGGTCATTCAGTTG+TGG | 0.599712 | 3.1:-48890127 | None:intergenic |
| AAACCTGAATAATTATCGAT+AGG | 0.600017 | 3.1:-48891068 | None:intergenic |
| TCAACATCAGACCGAAGCGT+TGG | 0.600663 | 3.1:+48890498 | MS.gene05746:CDS |
| TATTATGAGACTCTTTGCAC+CGG | 0.606478 | 3.1:+48891011 | MS.gene05746:CDS |
| GGCATTCAACATGGACGGGG+TGG | 0.611696 | 3.1:+48890217 | MS.gene05746:CDS |
| CTATCCCAACAAAATTACCA+TGG | 0.618972 | 3.1:+48889965 | MS.gene05746:CDS |
| ACCATGGCGTTCAACACGGA+CGG | 0.619182 | 3.1:+48890140 | MS.gene05746:CDS |
| GGACTTGGAATACTTCTACA+AGG | 0.619567 | 3.1:+48889986 | MS.gene05746:CDS |
| AATGATCCTGGTATTCAACA+TGG | 0.622879 | 3.1:+48890349 | MS.gene05746:CDS |
| CAACAACAAAATTCTTGCAG+TGG | 0.625689 | 3.1:+48890544 | MS.gene05746:CDS |
| CATGGCATTCAACATGGACG+GGG | 0.625970 | 3.1:+48890214 | MS.gene05746:CDS |
| AATGACCATGGCGTTCAACA+CGG | 0.633314 | 3.1:+48890136 | MS.gene05746:CDS |
| CAAGACATGATTGATGATTG+TGG | 0.634370 | 3.1:+48892190 | MS.gene05746:CDS |
| CATGTGACACCTGTTAATGG+AGG | 0.638273 | 3.1:+48890756 | MS.gene05746:CDS |
| TGGACAAATTGGTTGGATTG+CGG | 0.639366 | 3.1:-48889844 | None:intergenic |
| TCTACCTATGGAAGAAGCAG+CGG | 0.639381 | 3.1:+48891899 | MS.gene05746:CDS |
| TGCTGCTGATAATGGTGCGG+CGG | 0.640455 | 3.1:-48892256 | None:intergenic |
| GGACCCCACCAAAATTACCA+TGG | 0.646800 | 3.1:+48889881 | MS.gene05746:CDS |
| GGAATACTTCTACAAGGACA+TGG | 0.662894 | 3.1:+48889992 | MS.gene05746:CDS |
| TACTGCTGCTGATAATGGTG+CGG | 0.670583 | 3.1:-48892259 | None:intergenic |
| ATGATCATGGTATTCAACAA+GGG | 0.672665 | 3.1:+48890281 | MS.gene05746:CDS |
| GTATGGAACATAATTCAGCA+GGG | 0.676056 | 3.1:+48890958 | MS.gene05746:CDS |
| ATAAAATTACCTGCTCTGAG+AGG | 0.686791 | 3.1:-48891667 | None:intergenic |
| GACAAGGGAAAGGACTCTAG+AGG | 0.686791 | 3.1:+48892150 | MS.gene05746:CDS |
| CCAACAAAATCACCAGAGTG+TGG | 0.691943 | 3.1:+48890048 | MS.gene05746:CDS |
| GTATCGCCGGAAAATGACCA+TGG | 0.708673 | 3.1:+48890196 | MS.gene05746:CDS |
| ATGCCACAACTGAATGACCA+TGG | 0.716852 | 3.1:+48890124 | MS.gene05746:CDS |
| AGTGTGGTTGAACATGGACA+TGG | 0.753622 | 3.1:+48890064 | MS.gene05746:CDS |
| GACATGATTGATGATTGTGG+CGG | 0.760229 | 3.1:+48892193 | MS.gene05746:CDS |
| GGACTTGGAATACTTCAACG+AGG | 0.774898 | 3.1:+48889902 | MS.gene05746:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAATAATGTTTCATT+TGG | + | chr3.1:48890430-48890449 | MS.gene05746:CDS | 15.0% |
| !! | CATATATATATCAAAATAAC+TGG | - | chr3.1:48890653-48890672 | None:intergenic | 15.0% |
| !! | GATATTAAATTGTAATTGAA+TGG | - | chr3.1:48890253-48890272 | None:intergenic | 15.0% |
| !! | TACTCATATTGAAAAAATTT+GGG | - | chr3.1:48889736-48889755 | None:intergenic | 15.0% |
| !! | TTACTCATATTGAAAAAATT+TGG | - | chr3.1:48889737-48889756 | None:intergenic | 15.0% |
| !!! | CTTTTAGAAATATATTTGTT+TGG | + | chr3.1:48891220-48891239 | MS.gene05746:intron | 15.0% |
| !!! | GTTTATTTTGATTCTTATAT+AGG | + | chr3.1:48890672-48890691 | MS.gene05746:intron | 15.0% |
| !!! | TATCATAATGATTTTGATTT+GGG | + | chr3.1:48891457-48891476 | MS.gene05746:intron | 15.0% |
| !!! | TTTTTTGTGTGTATTATTTT+TGG | + | chr3.1:48892009-48892028 | MS.gene05746:intron | 15.0% |
| !! | ATATTGTATGTATTGAATAG+AGG | + | chr3.1:48891829-48891848 | MS.gene05746:intron | 20.0% |
| !! | ATGTATATATCATTTAGTGT+AGG | - | chr3.1:48889761-48889780 | None:intergenic | 20.0% |
| !! | TACATGAATAACAATAACAA+TGG | + | chr3.1:48889776-48889795 | MS.gene05746:CDS | 20.0% |
| !! | TGTATATATCATTTAGTGTA+GGG | - | chr3.1:48889760-48889779 | None:intergenic | 20.0% |
| !!! | ATCATAATGATTTTGATTTG+GGG | + | chr3.1:48891458-48891477 | MS.gene05746:intron | 20.0% |
| !!! | ATTGATGATATTAATATGGA+GGG | + | chr3.1:48891044-48891063 | MS.gene05746:CDS | 20.0% |
| !!! | CTTTTAGAAATACATTTGTT+TGG | + | chr3.1:48891313-48891332 | MS.gene05746:intron | 20.0% |
| !!! | GTATCATAATGATTTTGATT+TGG | + | chr3.1:48891456-48891475 | MS.gene05746:intron | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | + | chr3.1:48891040-48891059 | MS.gene05746:CDS | 20.0% |
| !!! | TTTCTTGTAGTGATTAATTT+TGG | - | chr3.1:48890629-48890648 | None:intergenic | 20.0% |
| !!! | TTTTTAATGTTATTACGTTG+AGG | + | chr3.1:48891549-48891568 | MS.gene05746:intron | 20.0% |
| ! | AAACCTGAATAATTATCGAT+AGG | - | chr3.1:48891071-48891090 | None:intergenic | 25.0% |
| ! | AGCAATACTTGAAAATCAAT+TGG | + | chr3.1:48892111-48892130 | MS.gene05746:CDS | 25.0% |
| ! | ATTGAAAAAATTTGGGTCAA+TGG | - | chr3.1:48889729-48889748 | None:intergenic | 25.0% |
| ! | CACGTATTAAATTAGCAAAA+TGG | - | chr3.1:48892050-48892069 | None:intergenic | 25.0% |
| ! | CGTGTCTTAAAATTAAGTAT+AGG | + | chr3.1:48892066-48892085 | MS.gene05746:intron | 25.0% |
| ! | GATACTAAATTGTAATCGAA+TGG | - | chr3.1:48890181-48890200 | None:intergenic | 25.0% |
| ! | GTAGAACAAAATTAAGAAGA+TGG | + | chr3.1:48891964-48891983 | MS.gene05746:CDS | 25.0% |
| ! | TATGAAAATCTTGAGATTCA+TGG | + | chr3.1:48890702-48890721 | MS.gene05746:CDS | 25.0% |
| ! | TGTAATATTACACTAAGACT+TGG | - | chr3.1:48890813-48890832 | None:intergenic | 25.0% |
| ! | TTGTCCATTAATAGCAATAA+TGG | + | chr3.1:48889860-48889879 | MS.gene05746:CDS | 25.0% |
| !! | AATTGGAATGATGATTTTGT+TGG | - | chr3.1:48889817-48889836 | None:intergenic | 25.0% |
| !! | ATTGCTATTAATGGACAAAT+TGG | - | chr3.1:48889858-48889877 | None:intergenic | 25.0% |
| !! | ATTGGAATGATGATTTTGTT+GGG | - | chr3.1:48889816-48889835 | None:intergenic | 25.0% |
| !! | GATTGATGATATTAATATGG+AGG | + | chr3.1:48891043-48891062 | MS.gene05746:CDS | 25.0% |
| AAGATGTGCACAATTTACAT+TGG | + | chr3.1:48891854-48891873 | MS.gene05746:CDS | 30.0% | |
| AATGATCATGGTATTCAACA+AGG | + | chr3.1:48890280-48890299 | MS.gene05746:CDS | 30.0% | |
| AGACGAATCATTTACTCTAA+TGG | + | chr3.1:48890580-48890599 | MS.gene05746:CDS | 30.0% | |
| AGATGTGCACAATTTACATT+GGG | + | chr3.1:48891855-48891874 | MS.gene05746:CDS | 30.0% | |
| ATATCACCAGAAAATGATCA+TGG | + | chr3.1:48890268-48890287 | MS.gene05746:CDS | 30.0% | |
| ATCATCAATCCAATCATATC+CGG | - | chr3.1:48891033-48891052 | None:intergenic | 30.0% | |
| ATGATCATGGTATTCAACAA+GGG | + | chr3.1:48890281-48890300 | MS.gene05746:CDS | 30.0% | |
| TACTTGAAAATCAATTGGAC+AGG | + | chr3.1:48892116-48892135 | MS.gene05746:CDS | 30.0% | |
| TGATGAAATAAAGAACTTCC+TGG | + | chr3.1:48890926-48890945 | MS.gene05746:CDS | 30.0% | |
| ! | AAGTCCATGGTAATTTTGTT+GGG | - | chr3.1:48889972-48889991 | None:intergenic | 30.0% |
| ! | AATACTTTTACCTTTCTGTG+TGG | - | chr3.1:48891990-48892009 | None:intergenic | 30.0% |
| ! | ATTTTGTTGGGACAAATTTG+TGG | - | chr3.1:48889804-48889823 | None:intergenic | 30.0% |
| ! | CTATTAATGGACAAATTGGT+TGG | - | chr3.1:48889854-48889873 | None:intergenic | 30.0% |
| ! | GGAAGTTCTTTATTTCATCA+AGG | - | chr3.1:48890926-48890945 | None:intergenic | 30.0% |
| ! | TATAGGTGAAATGTCTTTTG+AGG | + | chr3.1:48892083-48892102 | MS.gene05746:intron | 30.0% |
| ! | TGAAACATTTTCTCTTCCAA+TGG | + | chr3.1:48890387-48890406 | MS.gene05746:CDS | 30.0% |
| ! | TGAATACCATGATCATTTTC+TGG | - | chr3.1:48890277-48890296 | None:intergenic | 30.0% |
| ! | TGGAATAAGTAACTTTGAAG+TGG | + | chr3.1:48890450-48890469 | MS.gene05746:CDS | 30.0% |
| ! | TTTTGTTGGGACAAATTTGT+GGG | - | chr3.1:48889803-48889822 | None:intergenic | 30.0% |
| !! | AAAAACAATCCAAGTATCGA+AGG | + | chr3.1:48889674-48889693 | MS.gene05746:CDS | 30.0% |
| !! | ATTTTGTTGTGACATTGCAT+GGG | - | chr3.1:48890332-48890351 | None:intergenic | 30.0% |
| !! | GGAATAAGTAACTTTGAAGT+GGG | + | chr3.1:48890451-48890470 | MS.gene05746:CDS | 30.0% |
| !! | TGTATCAGTTTTTCTGAGAA+AGG | + | chr3.1:48890900-48890919 | MS.gene05746:intron | 30.0% |
| AATGATCCTGGTATTCAACA+TGG | + | chr3.1:48890349-48890368 | MS.gene05746:CDS | 35.0% | |
| AGATTGGAACACCTGAAAAA+AGG | + | chr3.1:48891642-48891661 | MS.gene05746:CDS | 35.0% | |
| ATGTCACAACAAAATGATCC+TGG | + | chr3.1:48890337-48890356 | MS.gene05746:CDS | 35.0% | |
| CAACAAAATTACCATGGACT+TGG | + | chr3.1:48889971-48889990 | MS.gene05746:CDS | 35.0% | |
| CAACAACAAAATTCTTGCAG+TGG | + | chr3.1:48890544-48890563 | MS.gene05746:CDS | 35.0% | |
| CAATCGTTCGATCAATTGTT+GGG | - | chr3.1:48890782-48890801 | None:intergenic | 35.0% | |
| CATGCTTACAGATGAGATAA+TGG | + | chr3.1:48891589-48891608 | MS.gene05746:intron | 35.0% | |
| CCAATGGTTCAAAATCAACT+TGG | + | chr3.1:48890403-48890422 | MS.gene05746:CDS | 35.0% | |
| CGATTACAATTTAGTATCGC+CGG | + | chr3.1:48890183-48890202 | MS.gene05746:CDS | 35.0% | |
| CGATTACTTTCATCTACCTA+TGG | + | chr3.1:48891887-48891906 | MS.gene05746:CDS | 35.0% | |
| CTATCCCAACAAAATTACCA+TGG | + | chr3.1:48889965-48889984 | MS.gene05746:CDS | 35.0% | |
| GGTCCTATCGATAATTATTC+AGG | + | chr3.1:48891065-48891084 | MS.gene05746:CDS | 35.0% | |
| GTATGGAACATAATTCAGCA+GGG | + | chr3.1:48890958-48890977 | MS.gene05746:CDS | 35.0% | |
| GTTTGTCTTCGAAATCATGA+AGG | + | chr3.1:48891087-48891106 | MS.gene05746:intron | 35.0% | |
| TATTATGAGACTCTTTGCAC+CGG | + | chr3.1:48891011-48891030 | MS.gene05746:CDS | 35.0% | |
| TCAATCGTTCGATCAATTGT+TGG | - | chr3.1:48890783-48890802 | None:intergenic | 35.0% | |
| TGTATGGAACATAATTCAGC+AGG | + | chr3.1:48890957-48890976 | MS.gene05746:CDS | 35.0% | |
| TTGAACAATATATACTCGCG+AGG | + | chr3.1:48891704-48891723 | MS.gene05746:intron | 35.0% | |
| ! | ATAAAATTACCTGCTCTGAG+AGG | - | chr3.1:48891670-48891689 | None:intergenic | 35.0% |
| ! | CAAGACATGATTGATGATTG+TGG | + | chr3.1:48892190-48892209 | MS.gene05746:CDS | 35.0% |
| ! | CAAGTCCATGGTAATTTTGT+TGG | - | chr3.1:48889973-48889992 | None:intergenic | 35.0% |
| ! | GGGTCCATTATTGCTATTAA+TGG | - | chr3.1:48889867-48889886 | None:intergenic | 35.0% |
| ! | TGGTAATTTTGTTGGGATAG+TGG | - | chr3.1:48889965-48889984 | None:intergenic | 35.0% |
| ! | TTCCAAGTCCATGGTAATTT+TGG | - | chr3.1:48889892-48889911 | None:intergenic | 35.0% |
| !! | AAGTCCATGGTAATTTTGGT+GGG | - | chr3.1:48889888-48889907 | None:intergenic | 35.0% |
| !! | CATTTTGTTGTGACATTGCA+TGG | - | chr3.1:48890333-48890352 | None:intergenic | 35.0% |
| !!! | ATTTTGTTGGGATAGTGGAT+TGG | - | chr3.1:48889960-48889979 | None:intergenic | 35.0% |
| !!! | CCAAGTTGATTTTGAACCAT+TGG | - | chr3.1:48890406-48890425 | None:intergenic | 35.0% |
| !!! | GAATTTTGTTGTTGTTCGAG+TGG | - | chr3.1:48890538-48890557 | None:intergenic | 35.0% |
| AATGACCATGGCATTCAACA+TGG | + | chr3.1:48890208-48890227 | MS.gene05746:CDS | 40.0% | |
| ATTCAGTTGTGGCATTGCAT+TGG | - | chr3.1:48890119-48890138 | None:intergenic | 40.0% | |
| CACCAAAATTACCATGGACT+TGG | + | chr3.1:48889887-48889906 | MS.gene05746:CDS | 40.0% | |
| CATGGACATGGTAGCAATAT+TGG | + | chr3.1:48890076-48890095 | MS.gene05746:CDS | 40.0% | |
| CTTCCTGGATCAGTATTGTA+TGG | + | chr3.1:48890941-48890960 | MS.gene05746:CDS | 40.0% | |
| CTTGAGATTCATGGAAGCTT+GGG | + | chr3.1:48890711-48890730 | MS.gene05746:CDS | 40.0% | |
| GACTTGGAATACTTCAACGA+GGG | + | chr3.1:48889903-48889922 | MS.gene05746:CDS | 40.0% | |
| GGAATACTTCTACAAGGACA+TGG | + | chr3.1:48889992-48890011 | MS.gene05746:CDS | 40.0% | |
| GGACTTGGAATACTTCTACA+AGG | + | chr3.1:48889986-48890005 | MS.gene05746:CDS | 40.0% | |
| GTTCCATACAATACTGATCC+AGG | - | chr3.1:48890947-48890966 | None:intergenic | 40.0% | |
| TCTTGAGATTCATGGAAGCT+TGG | + | chr3.1:48890710-48890729 | MS.gene05746:CDS | 40.0% | |
| TGGACAAATTGGTTGGATTG+CGG | - | chr3.1:48889847-48889866 | None:intergenic | 40.0% | |
| TTGAGATTCATGGAAGCTTG+GGG | + | chr3.1:48890712-48890731 | MS.gene05746:CDS | 40.0% | |
| ! | CAAGTCCATGGTAATTTTGG+TGG | - | chr3.1:48889889-48889908 | None:intergenic | 40.0% |
| ! | CACACTCTGGTGATTTTGTT+GGG | - | chr3.1:48890050-48890069 | None:intergenic | 40.0% |
| ! | GACATGATTGATGATTGTGG+CGG | + | chr3.1:48892193-48892212 | MS.gene05746:CDS | 40.0% |
| ! | GTTGAAGTATTCCAAGTCCA+TGG | - | chr3.1:48889901-48889920 | None:intergenic | 40.0% |
| !! | AGTCCATGGTAATTTTGGTG+GGG | - | chr3.1:48889887-48889906 | None:intergenic | 40.0% |
| !! | GTAGAAGTATTCCAAGTCCA+TGG | - | chr3.1:48889985-48890004 | None:intergenic | 40.0% |
| !! | TGAATGCCATGGTCATTTTC+CGG | - | chr3.1:48890205-48890224 | None:intergenic | 40.0% |
| !!! | TCTGAGAGGTTCCTTTTTTC+AGG | - | chr3.1:48891656-48891675 | None:intergenic | 40.0% |
| AAAAAGGAACCTCTCAGAGC+AGG | + | chr3.1:48891658-48891677 | MS.gene05746:CDS | 45.0% | |
| AACGTTGCACCTTCGATACT+TGG | - | chr3.1:48889686-48889705 | None:intergenic | 45.0% | |
| AAGAAGATGGCCACACAGAA+AGG | + | chr3.1:48891977-48891996 | MS.gene05746:CDS | 45.0% | |
| AATGACCATGGCGTTCAACA+CGG | + | chr3.1:48890136-48890155 | MS.gene05746:CDS | 45.0% | |
| ACCATGGCATTCAACATGGA+CGG | + | chr3.1:48890212-48890231 | MS.gene05746:CDS | 45.0% | |
| AGTGTGGTTGAACATGGACA+TGG | + | chr3.1:48890064-48890083 | MS.gene05746:CDS | 45.0% | |
| ATGCCACAACTGAATGACCA+TGG | + | chr3.1:48890124-48890143 | MS.gene05746:CDS | 45.0% | |
| ATTGTTGGGCCTCCATTAAC+AGG | - | chr3.1:48890768-48890787 | None:intergenic | 45.0% | |
| CATGTGACACCTGTTAATGG+AGG | + | chr3.1:48890756-48890775 | MS.gene05746:CDS | 45.0% | |
| CCAACAAAATCACCAGAGTG+TGG | + | chr3.1:48890048-48890067 | MS.gene05746:CDS | 45.0% | |
| CCATGTCCATGTTGAATACC+AGG | - | chr3.1:48890358-48890377 | None:intergenic | 45.0% | |
| CCTGGTATTCAACATGGACA+TGG | + | chr3.1:48890355-48890374 | MS.gene05746:CDS | 45.0% | |
| CTCTTTGCACCGGATATGAT+TGG | + | chr3.1:48891021-48891040 | MS.gene05746:CDS | 45.0% | |
| GCGACATAATTCAACGCAGT+TGG | - | chr3.1:48892226-48892245 | None:intergenic | 45.0% | |
| GGACTTGGAATACTTCAACG+AGG | + | chr3.1:48889902-48889921 | MS.gene05746:CDS | 45.0% | |
| GGGTTGTGACTGAGTATTTC+TGG | + | chr3.1:48891478-48891497 | MS.gene05746:intron | 45.0% | |
| TCAATTGGACAGGCAAGATC+CGG | + | chr3.1:48892126-48892145 | MS.gene05746:CDS | 45.0% | |
| TCATGGTATTCAACAAGGGC+AGG | + | chr3.1:48890285-48890304 | MS.gene05746:CDS | 45.0% | |
| TCTACCTATGGAAGAAGCAG+CGG | + | chr3.1:48891899-48891918 | MS.gene05746:CDS | 45.0% | |
| TGGATTGCGGTTGCTCAAAT+TGG | - | chr3.1:48889834-48889853 | None:intergenic | 45.0% | |
| TTGATCAAGTGCCAACGCTT+CGG | - | chr3.1:48890512-48890531 | None:intergenic | 45.0% | |
| ! | CCACACTCTGGTGATTTTGT+TGG | - | chr3.1:48890051-48890070 | None:intergenic | 45.0% |
| ! | CTCCATTAACAGGTGTCACA+TGG | - | chr3.1:48890758-48890777 | None:intergenic | 45.0% |
| !! | AAGCGTTGGCACTTGATCAA+TGG | + | chr3.1:48890512-48890531 | MS.gene05746:CDS | 45.0% |
| !! | CAAGAGCAAGTTGGTGAGAT+TGG | + | chr3.1:48891626-48891645 | MS.gene05746:CDS | 45.0% |
| !! | TACTGCTGCTGATAATGGTG+CGG | - | chr3.1:48892262-48892281 | None:intergenic | 45.0% |
| AAGCGACAGACTTGTCTGCA+TGG | + | chr3.1:48891767-48891786 | MS.gene05746:intron | 50.0% | |
| ACGCCATGGTCATTCAGTTG+TGG | - | chr3.1:48890130-48890149 | None:intergenic | 50.0% | |
| CACCAGAGTGTGGTTGAACA+TGG | + | chr3.1:48890058-48890077 | MS.gene05746:CDS | 50.0% | |
| CATGGCATTCAACATGGACG+GGG | + | chr3.1:48890214-48890233 | MS.gene05746:CDS | 50.0% | |
| CCATGGCATTCAACATGGAC+GGG | + | chr3.1:48890213-48890232 | MS.gene05746:CDS | 50.0% | |
| CGCCATGTGACACCTGTTAA+TGG | + | chr3.1:48890753-48890772 | MS.gene05746:CDS | 50.0% | |
| GACAAGGGAAAGGACTCTAG+AGG | + | chr3.1:48892150-48892169 | MS.gene05746:CDS | 50.0% | |
| GAGCAAGAGCAAGAGCAAGT+TGG | + | chr3.1:48891617-48891636 | MS.gene05746:CDS | 50.0% | |
| GGACCCCACCAAAATTACCA+TGG | + | chr3.1:48889881-48889900 | MS.gene05746:CDS | 50.0% | |
| GGTATTCAACAAGGGCAGGA+TGG | + | chr3.1:48890289-48890308 | MS.gene05746:CDS | 50.0% | |
| GTATCGCCGGAAAATGACCA+TGG | + | chr3.1:48890196-48890215 | MS.gene05746:CDS | 50.0% | |
| GTCCATGTTCAACCACACTC+TGG | - | chr3.1:48890063-48890082 | None:intergenic | 50.0% | |
| TCAACATCAGACCGAAGCGT+TGG | + | chr3.1:48890498-48890517 | MS.gene05746:CDS | 50.0% | |
| AAGATCCGGCGACAAGGGAA+AGG | + | chr3.1:48892140-48892159 | MS.gene05746:CDS | 55.0% | |
| ACCATGGCGTTCAACACGGA+CGG | + | chr3.1:48890140-48890159 | MS.gene05746:CDS | 55.0% | |
| AGAGTCCTTTCCCTTGTCGC+CGG | - | chr3.1:48892148-48892167 | None:intergenic | 55.0% | |
| CCCGTCCATGTTGAATGCCA+TGG | - | chr3.1:48890216-48890235 | None:intergenic | 55.0% | |
| CTAGCCGCTGCTTCTTCCAT+AGG | - | chr3.1:48891906-48891925 | None:intergenic | 55.0% | |
| !! | TGCTGCTGATAATGGTGCGG+CGG | - | chr3.1:48892259-48892278 | None:intergenic | 55.0% |
| ACAGGCAAGATCCGGCGACA+AGG | + | chr3.1:48892134-48892153 | MS.gene05746:CDS | 60.0% | |
| CAGGCAAGATCCGGCGACAA+GGG | + | chr3.1:48892135-48892154 | MS.gene05746:CDS | 60.0% | |
| GCGTTCAACACGGACGGAGT+AGG | + | chr3.1:48890146-48890165 | MS.gene05746:CDS | 60.0% | |
| GGCATTCAACATGGACGGGG+TGG | + | chr3.1:48890217-48890236 | MS.gene05746:CDS | 60.0% | |
| TCCGTCCGTGTTGAACGCCA+TGG | - | chr3.1:48890144-48890163 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 48889662 | 48892282 | 48889662 | ID=MS.gene05746 |
| chr3.1 | mRNA | 48889662 | 48892282 | 48889662 | ID=MS.gene05746.t1;Parent=MS.gene05746 |
| chr3.1 | exon | 48889662 | 48890601 | 48889662 | ID=MS.gene05746.t1.exon1;Parent=MS.gene05746.t1 |
| chr3.1 | CDS | 48889662 | 48890601 | 48889662 | ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1 |
| chr3.1 | exon | 48890694 | 48890802 | 48890694 | ID=MS.gene05746.t1.exon2;Parent=MS.gene05746.t1 |
| chr3.1 | CDS | 48890694 | 48890802 | 48890694 | ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1 |
| chr3.1 | exon | 48890908 | 48891086 | 48890908 | ID=MS.gene05746.t1.exon3;Parent=MS.gene05746.t1 |
| chr3.1 | CDS | 48890908 | 48891086 | 48890908 | ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1 |
| chr3.1 | exon | 48891600 | 48891679 | 48891600 | ID=MS.gene05746.t1.exon4;Parent=MS.gene05746.t1 |
| chr3.1 | CDS | 48891600 | 48891679 | 48891600 | ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1 |
| chr3.1 | exon | 48891849 | 48891998 | 48891849 | ID=MS.gene05746.t1.exon5;Parent=MS.gene05746.t1 |
| chr3.1 | CDS | 48891849 | 48891998 | 48891849 | ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1 |
| chr3.1 | exon | 48892088 | 48892282 | 48892088 | ID=MS.gene05746.t1.exon6;Parent=MS.gene05746.t1 |
| chr3.1 | CDS | 48892088 | 48892282 | 48892088 | ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1 |
| Gene Sequence |
| Protein sequence |
