AlfalfaGEDB | MS.gene05746

M. sativa cultivar XinJiangDaYe / MS.gene05746

KEGG: -
GO: -
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05746.t1	KEH34360.1	79.7	551	108	3	1	550	1	548	2.10E-157	565.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05746.t1	A0A072V894	79.7	551	108	3	1	550	1	548	1.5e-157	565.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene05746.t1	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05746.t1	MTR_3g465110	88.095	546	59	5	1	544	1	542	0.0	922
MS.gene05746.t1	MTR_3g104830	50.808	557	193	13	7	543	2	497	4.59e-168	486

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05746.t1	AT5G16100	25.253	297	178	6	267	528	153	440	1.13e-23	104

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Find 110 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGAATAATTATCGAT+AGG	0.600017	3.1:-48891068	None:intergenic
AACGTTGCACCTTCGATACT+TGG	0.325070	3.1:-48889683	None:intergenic
AAGAAGATGGCCACACAGAA+AGG	0.518680	3.1:+48891977	MS.gene05746:CDS
AAGATCCGGCGACAAGGGAA+AGG	0.552910	3.1:+48892140	MS.gene05746:CDS
AAGATGTGCACAATTTACAT+TGG	0.515263	3.1:+48891854	MS.gene05746:CDS
AAGCGTTGGCACTTGATCAA+TGG	0.517228	3.1:+48890512	MS.gene05746:CDS
AATGACCATGGCATTCAACA+TGG	0.573215	3.1:+48890208	MS.gene05746:CDS
AATGACCATGGCGTTCAACA+CGG	0.633314	3.1:+48890136	MS.gene05746:CDS
AATGATCATGGTATTCAACA+AGG	0.598505	3.1:+48890280	MS.gene05746:CDS
AATGATCCTGGTATTCAACA+TGG	0.622879	3.1:+48890349	MS.gene05746:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGTGCACAATTTACAT+TGG	+	chr3.1:48891854-48891873	MS.gene05746:CDS	30.0%
AATGATCATGGTATTCAACA+AGG	+	chr3.1:48890280-48890299	MS.gene05746:CDS	30.0%
AGACGAATCATTTACTCTAA+TGG	+	chr3.1:48890580-48890599	MS.gene05746:CDS	30.0%
AGATGTGCACAATTTACATT+GGG	+	chr3.1:48891855-48891874	MS.gene05746:CDS	30.0%
ATATCACCAGAAAATGATCA+TGG	+	chr3.1:48890268-48890287	MS.gene05746:CDS	30.0%
ATCATCAATCCAATCATATC+CGG	-	chr3.1:48891033-48891052	None:intergenic	30.0%
ATGATCATGGTATTCAACAA+GGG	+	chr3.1:48890281-48890300	MS.gene05746:CDS	30.0%
TACTTGAAAATCAATTGGAC+AGG	+	chr3.1:48892116-48892135	MS.gene05746:CDS	30.0%
TGATGAAATAAAGAACTTCC+TGG	+	chr3.1:48890926-48890945	MS.gene05746:CDS	30.0%
AATGATCCTGGTATTCAACA+TGG	+	chr3.1:48890349-48890368	MS.gene05746:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	48889662	48892282	48889662	ID=MS.gene05746
chr3.1	mRNA	48889662	48892282	48889662	ID=MS.gene05746.t1;Parent=MS.gene05746
chr3.1	exon	48889662	48890601	48889662	ID=MS.gene05746.t1.exon1;Parent=MS.gene05746.t1
chr3.1	CDS	48889662	48890601	48889662	ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1
chr3.1	exon	48890694	48890802	48890694	ID=MS.gene05746.t1.exon2;Parent=MS.gene05746.t1
chr3.1	CDS	48890694	48890802	48890694	ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1
chr3.1	exon	48890908	48891086	48890908	ID=MS.gene05746.t1.exon3;Parent=MS.gene05746.t1
chr3.1	CDS	48890908	48891086	48890908	ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1
chr3.1	exon	48891600	48891679	48891600	ID=MS.gene05746.t1.exon4;Parent=MS.gene05746.t1
chr3.1	CDS	48891600	48891679	48891600	ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1
chr3.1	exon	48891849	48891998	48891849	ID=MS.gene05746.t1.exon5;Parent=MS.gene05746.t1
chr3.1	CDS	48891849	48891998	48891849	ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1
chr3.1	exon	48892088	48892282	48892088	ID=MS.gene05746.t1.exon6;Parent=MS.gene05746.t1
chr3.1	CDS	48892088	48892282	48892088	ID=cds.MS.gene05746.t1;Parent=MS.gene05746.t1

Gene Sequence

>MS.gene05746

ATGGCAAACAGAAAAAACAATCCAAGTATCGAAGGTGCAACGTTTAAATTTAATGATGATGATGCCATTGACCCAAATTTTTTCAATATGAGTAACCCTACACTAAATGATATATACATGAATAACAATAACAATGGACCCACAAATTTGTCCCAACAAAATCATCATTCCAATTTGAGCAACCGCAATCCAACCAATTTGTCCATTAATAGCAATAATGGACCCCACCAAAATTACCATGGACTTGGAATACTTCAACGAGGGCAACAAAGTAGTAATTTCAATAGTCACTTTTCCAATCCACTATCCCAACAAAATTACCATGGACTTGGAATACTTCTACAAGGACATGGTAGTAGTAATGAACAATTTCATACTACACTATCCCAACAAAATCACCAGAGTGTGGTTGAACATGGACATGGTAGCAATATTGGAAATGTCTCATTTAATTCCAATGCAATGCCACAACTGAATGACCATGGCGTTCAACACGGACGGAGTAGGAATTACGATCCATTCGATTACAATTTAGTATCGCCGGAAAATGACCATGGCATTCAACATGGACGGGGTGGTAATTATGATCCATTCAATTACAATTTAATATCACCAGAAAATGATCATGGTATTCAACAAGGGCAGGATGGTAATAATGATGTATTTTCCCATGCAATGTCACAACAAAATGATCCTGGTATTCAACATGGACATGGTAGTACAAATGAAACATTTTCTCTTCCAATGGTTCAAAATCAACTTGGTCAGCAAAATAATAATGTTTCATTTGGAATAAGTAACTTTGAAGTGGGTAGTTCGTCACGAATGAATGAGAATCAACATCAGACCGAAGCGTTGGCACTTGATCAATGGCCACTCGAACAACAACAAAATTCTTGCAGTGGTAGTCAAGTTCTTAGACGAATCATTTACTCTAATGGTTAGTTTTTAATCACATATATGACCAAAATTAATCACTACAAGAAAACCAGTTATTTTGATATATATATGTTTATTTTGATTCTTATATAGGTTTTCAATATGAAAATCTTGAGATTCATGGAAGCTTGGGGTTGATTACACATGCAGTTCGCCATGTGACACCTGTTAATGGAGGCCCAACAATTGATCGAACGATTGAGTACGTTCCAAGTCTTAGTGTAATATTACATTGTTTGTTTTCTTTTAATATTTTTTTGTAATTAAAATTTTCACATTATAATTATAATTGAAATTTTTGTATCAGTTTTTCTGAGAAAGGCCTTGATGAAATAAAGAACTTCCTGGATCAGTATTGTATGGAACATAATTCAGCAGGGTACTTTCTTATACAAGATTCAATGTGTGCGTATTATGAGACTCTTTGCACCGGATATGATTGGATTGATGATATTAATATGGAGGGTCCTATCGATAATTATTCAGGTTTGTCTTCGAAATCATGAAGGAAAAAGAAAAAAAGTTCTTTTAGAAATACACTTGTTTCATCACAAACATAAATGAATTTCATTTAGTCACACACGCATAAATGTAAAAAATATGAAAATGAAAAAAAGTACTTTTAGAAATATATTTGTTTGGCAACAAACTTAAATGAATTTCATTTAGTCACACACATAAATGTAAAAAATAAGAAAATGAAAAAAAAGTACTTTTAGAAATACATTTGTTTGGTCACAAACTTAAATGAATTTCATTTAGTCACACACACATAAATGTAAAATATACTAAAAAGAAAAGAATTAAGTAACATGTATTTTTGAAATAATTTAATGATATGTATTTAACGAGTGTGTATCATAATGATTTTGATTTGGGGTTGTGACTGAGTATTTCTGGTACTTTCGTATAATTTGTTTAATCAAAATTTTCTTTTATTTAACTTTTTTTTTAATGTTATTACGTTGAGGTGAGTTTCAATTATCATCATGCTTACAGATGAGATAATGGAGCAAGAGCAAGAGCAAGAGCAAGTTGGTGAGATTGGAACACCTGAAAAAAGGAACCTCTCAGAGCAGGTAATTTTATCTCTTCTTGTTTTCTTGAACAATATATACTCGCGAGGTAAATATTGTTTATAATTTACATACGTTAGTACGATTAAAAAGCGACAGACTTGTCTGCATGGTAACGTGATTAATTGCATGTATCAATTTTGATATATAACATATTGTATGTATTGAATAGAGGAAAAGATGTGCACAATTTACATTGGGTGATTTCTGCGATTACTTTCATCTACCTATGGAAGAAGCAGCGGCTAGAGTGAACATAGCTGCATCAACTCTAAAGAAAATTTGTCGTAGAACAAAATTAAGAAGATGGCCACACAGAAAGGTAAAAGTATTTTTTTGTGTGTATTATTTTTGGTTTCTAATGAATATTCCATTTTGCTAATTTAATACGTGTCTTAAAATTAAGTATAGGTGAAATGTCTTTTGAGGCAAATAGCAATACTTGAAAATCAATTGGACAGGCAAGATCCGGCGACAAGGGAAAGGACTCTAGAGGAAATTAAGCAGCTTAAACAAGACATGATTGATGATTGTGGCGGACATACACCAACTGCGTTGAATTATGTCGCTAACTTCTTGCCGCCGCACCATTATCAGCAGCAGTAG

Protein sequence

>MS.gene05746.t1

MANRKNNPSIEGATFKFNDDDAIDPNFFNMSNPTLNDIYMNNNNNGPTNLSQQNHHSNLSNRNPTNLSINSNNGPHQNYHGLGILQRGQQSSNFNSHFSNPLSQQNYHGLGILLQGHGSSNEQFHTTLSQQNHQSVVEHGHGSNIGNVSFNSNAMPQLNDHGVQHGRSRNYDPFDYNLVSPENDHGIQHGRGGNYDPFNYNLISPENDHGIQQGQDGNNDVFSHAMSQQNDPGIQHGHGSTNETFSLPMVQNQLGQQNNNVSFGISNFEVGSSSRMNENQHQTEALALDQWPLEQQQNSCSGSQVLRRIIYSNGFQYENLEIHGSLGLITHAVRHVTPVNGGPTIDRTIDFSEKGLDEIKNFLDQYCMEHNSAGYFLIQDSMCAYYETLCTGYDWIDDINMEGPIDNYSDEIMEQEQEQEQVGEIGTPEKRNLSEQRKRCAQFTLGDFCDYFHLPMEEAAARVNIAASTLKKICRRTKLRRWPHRKVKCLLRQIAILENQLDRQDPATRERTLEEIKQLKQDMIDDCGGHTPTALNYVANFLPPHHYQQQ