AlfalfaGEDB | MS.gene057464

M. sativa cultivar XinJiangDaYe / MS.gene057464

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02257.18 PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057464.t1	XP_024626129.1	83.2	273	46	0	1	273	1	273	2.20E-123	451.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057464.t1	Q9LFQ3	40.1	152	87	3	99	250	52	199	8.8e-20	99.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057464.t1	A0A396GZV2	83.2	273	46	0	1	273	1	273	1.6e-123	451.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene057464.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057464.t1	MTR_7g013380	83.206	262	44	0	1	262	1	262	2.14e-151	425
MS.gene057464.t1	MTR_4g133300	34.188	234	145	4	26	259	20	244	3.71e-34	124
MS.gene057464.t1	MTR_4g133300	35.673	171	101	5	5	173	81	244	1.48e-19	85.5
MS.gene057464.t1	MTR_4g133470	33.761	234	146	4	26	259	20	244	9.86e-33	120
MS.gene057464.t1	MTR_4g133470	36.257	171	100	5	5	173	81	244	3.73e-19	84.7
MS.gene057464.t1	MTR_3g006125	39.521	167	93	3	99	259	89	253	1.43e-26	104
MS.gene057464.t1	MTR_3g006125	37.805	164	94	3	11	168	87	248	1.89e-23	96.3
MS.gene057464.t1	MTR_1g105955	43.796	137	70	2	118	254	33	162	2.51e-26	102
MS.gene057464.t1	MTR_1g105955	38.462	156	85	4	14	168	17	162	8.43e-22	90.1
MS.gene057464.t1	MTR_3g006185	37.952	166	96	3	99	259	8	171	2.90e-24	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057464.t1	AT5G15020	42.222	135	76	2	116	250	67	199	8.01e-22	95.5
MS.gene057464.t1	AT5G15020	35.484	155	92	3	14	166	53	201	9.97e-18	83.6
MS.gene057464.t1	AT5G15020	42.222	135	76	2	116	250	67	199	8.30e-22	95.5
MS.gene057464.t1	AT5G15020	35.484	155	92	3	14	166	53	201	1.03e-17	83.6
MS.gene057464.t1	AT1G24190	37.654	162	95	5	91	250	6	163	1.65e-21	94.7
MS.gene057464.t1	AT1G24190	35.260	173	105	6	3	172	4	172	7.42e-19	86.7
MS.gene057464.t1	AT1G24190	41.975	81	45	1	186	266	15	93	6.36e-11	63.2
MS.gene057464.t1	AT1G24190	37.654	162	95	5	91	250	6	163	1.68e-21	94.4
MS.gene057464.t1	AT1G24190	35.260	173	105	6	3	172	4	172	7.28e-19	86.7
MS.gene057464.t1	AT1G24190	41.975	81	45	1	186	266	15	93	6.42e-11	63.2

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Find 47 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTCAGTAAATTCTTGA+AGG	0.490603	7.2:+83879073	MS.gene057464:CDS
AACATCATTGACAAATTCTT+TGG	0.313079	7.2:-83879572	None:intergenic
AACTTCATTGACGAATTCCT+TGG	0.476864	7.2:-83878852	None:intergenic
AAGCTTGATTTCAAATCCAT+CGG	0.533316	7.2:-83879503	None:intergenic
AAGGGATTATTTGAAGGTCA+TGG	0.456386	7.2:+83879092	MS.gene057464:CDS
AATCAAGCTTCCATCGGAGG+AGG	0.577026	7.2:+83879516	MS.gene057464:CDS
AATCAAGCTTCCATTGGAGG+AGG	0.611644	7.2:+83879879	MS.gene057464:CDS
AATCAAGCTTCTATCTGAGG+AGG	0.631110	7.2:+83879160	MS.gene057464:CDS
AATCTCAGTAAATTCTTGAA+GGG	0.520509	7.2:+83879074	MS.gene057464:CDS
AATCTTGGTGAATTATTGAA+GGG	0.514858	7.2:+83879430	MS.gene057464:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTTGATTTCAAATCCAT+CGG	-	chr7.2:83879150-83879169	None:intergenic	30.0%
ATATGAAATCAAGCTTCCAT+TGG	+	chr7.2:83879873-83879892	MS.gene057464:CDS	30.0%
GAATCTTGGTGAATTATTGA+AGG	+	chr7.2:83879429-83879448	MS.gene057464:CDS	30.0%
GGAACAATTTCACGTTAAAT+TGG	+	chr7.2:83879900-83879919	MS.gene057464:CDS	30.0%
TAACTTTCTGAATGTCTTGA+AGG	+	chr7.2:83879280-83879299	MS.gene057464:CDS	30.0%
TAACTTTCTGAATGTGTTGA+AGG	+	chr7.2:83879636-83879655	MS.gene057464:CDS	30.0%
TGAAGGATTACAAAACACAA+AGG	+	chr7.2:83879297-83879316	MS.gene057464:CDS	30.0%
TGATGCATTACAAGAAACAA+AGG	+	chr7.2:83878933-83878952	MS.gene057464:CDS	30.0%
TTCTTGAAGGGATTATTTGA+AGG	+	chr7.2:83879086-83879105	MS.gene057464:CDS	30.0%
AACTTCATTGACGAATTCCT+TGG	-	chr7.2:83878855-83878874	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	83878812	83879942	83878812	ID=MS.gene057464
chr7.2	mRNA	83878812	83879942	83878812	ID=MS.gene057464.t1;Parent=MS.gene057464
chr7.2	exon	83878812	83878954	83878812	ID=MS.gene057464.t1.exon1;Parent=MS.gene057464.t1
chr7.2	CDS	83878812	83878954	83878812	ID=cds.MS.gene057464.t1;Parent=MS.gene057464.t1
chr7.2	exon	83879061	83879318	83879061	ID=MS.gene057464.t1.exon2;Parent=MS.gene057464.t1
chr7.2	CDS	83879061	83879318	83879061	ID=cds.MS.gene057464.t1;Parent=MS.gene057464.t1
chr7.2	exon	83879417	83879674	83879417	ID=MS.gene057464.t1.exon3;Parent=MS.gene057464.t1
chr7.2	CDS	83879417	83879674	83879417	ID=cds.MS.gene057464.t1;Parent=MS.gene057464.t1
chr7.2	exon	83879780	83879942	83879780	ID=MS.gene057464.t1.exon4;Parent=MS.gene057464.t1
chr7.2	CDS	83879780	83879942	83879780	ID=cds.MS.gene057464.t1;Parent=MS.gene057464.t1

Gene Sequence

>MS.gene057464

ATGGAAGGACATTCTCAAGAACATTGTGACGTCAAAAAGGCCAAGGAATTCGTCAATGAAGTTAAGCATAGATTTATTCAAGTTAACAGGAGGGATAAGTATGATGACTTTTTGAATGTCTTGATGCATTACAAGAAACAAAGGTTTGATCATGTGTGACCACTATTTTTTTTATTGTAATGTTAGATTGATTTTATTAAATATTGTTGATTGTAACTAATTTATCTATCCTTTTGGTATATTTTGTAGGATCGATGATGCAAATCTCAGTAAATTCTTGAAGGGATTATTTGAAGGTCATGGAGATCTTATATCAAGATTGAACTACTTCATGCCTGATGGATTTGAAATCAAGCTTCTATCTGAGGAGGAACAATCTCTGGAGCATTTTGTAGCCAAAAATGCGAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAGTCAGAGGGATAAGTATGATAACTTTCTGAATGTCTTGAAGGATTACAAAACACAAAGGTTTGATCATTTGTGACCACTATTTTTTTATTATATTGTGAAATGGATTTTTATTTATTATTGTTGATTGTAACTAATTTTTTTATTATATTTTGTAGGATTGACGCTGCGAATCTTGGTGAATTATTGAAGGGATTATTTCAAGGTCATAGAGACCTTATATCAAGATTGAACTACTTCATGCCCGATGGATTTGAAATCAAGCTTCCATCGGAGGAGGAAGAATCTCTTGAACATTCTGAAGAAAAAACTGCCAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGAAAAGTATGTTAACTTTCTGAATGTGTTGAAGGATTACAAGAGACAAAGGTTTGATCATTTGTGACCACTATTTTTTTATTATATTGCGAAATGGATTCTATTAATTTTTGTTGGTTGTTATTAATTTGTCTATCCATTTGGTATATTTTGTAGAATTGATGATGCAAATCTGGTTAAAATAATGAAGAAAATATTTGAAGGTCATAGCGATTTAATATCAAGATTAAACTACTTCCTACCTGATGGATATGAAATCAAGCTTCCATTGGAGGAGGAACAATTTCACGTTAAATTGGAAGATGCTACAAGTTCTTGA

Protein sequence

>MS.gene057464.t1

MEGHSQEHCDVKKAKEFVNEVKHRFIQVNRRDKYDDFLNVLMHYKKQRIDDANLSKFLKGLFEGHGDLISRLNYFMPDGFEIKLLSEEEQSLEHFVAKNAKEFVNDVKCRFIQVSQRDKYDNFLNVLKDYKTQRIDAANLGELLKGLFQGHRDLISRLNYFMPDGFEIKLPSEEEESLEHSEEKTAKEFVNDVKCRFIQVNQREKYVNFLNVLKDYKRQRIDDANLVKIMKKIFEGHSDLISRLNYFLPDGYEIKLPLEEEQFHVKLEDATSS