Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05749.t1 | XP_024634655.1 | 79.6 | 206 | 27 | 1 | 8 | 213 | 1 | 191 | 1.70E-76 | 295.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05749.t1 | Q5JMK6 | 39.8 | 98 | 59 | 0 | 108 | 205 | 137 | 234 | 1.2e-09 | 65.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05749.t1 | A0A2K3MUT1 | 56.0 | 193 | 82 | 3 | 14 | 205 | 1 | 191 | 2.8e-41 | 178.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05749.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05749.t1 | MTR_3g465280 | 58.333 | 84 | 32 | 2 | 13 | 96 | 1 | 81 | 1.89e-25 | 100 |
| MS.gene05749.t1 | MTR_3g465280 | 47.917 | 96 | 47 | 3 | 1 | 95 | 83 | 176 | 6.48e-19 | 83.6 |
| MS.gene05749.t1 | MTR_4g079500 | 41.053 | 95 | 56 | 0 | 108 | 202 | 194 | 288 | 3.14e-16 | 76.6 |
| MS.gene05749.t1 | MTR_2g090900 | 40.000 | 95 | 57 | 0 | 108 | 202 | 191 | 285 | 2.76e-15 | 73.9 |
| MS.gene05749.t1 | MTR_2g090900 | 40.000 | 95 | 57 | 0 | 108 | 202 | 191 | 285 | 4.03e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05749.t1 | AT2G42380 | 38.393 | 112 | 69 | 0 | 91 | 202 | 169 | 280 | 1.15e-17 | 80.5 |
| MS.gene05749.t1 | AT3G58120 | 38.053 | 113 | 69 | 1 | 90 | 202 | 185 | 296 | 8.97e-17 | 78.2 |
| MS.gene05749.t1 | AT2G42380 | 39.583 | 96 | 58 | 0 | 91 | 186 | 169 | 264 | 1.99e-15 | 73.6 |
| MS.gene05749.t1 | AT3G58120 | 39.175 | 97 | 58 | 1 | 90 | 186 | 185 | 280 | 1.90e-14 | 71.2 |
| MS.gene05749.t1 | AT2G42380 | 33.929 | 112 | 63 | 1 | 91 | 202 | 169 | 269 | 1.67e-12 | 65.9 |
| MS.gene05749.t1 | AT5G07160 | 43.011 | 93 | 53 | 0 | 108 | 200 | 48 | 140 | 9.34e-12 | 61.2 |
Find 51 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAATTTCAAGTCTTAAT+TGG | 0.217186 | 3.1:-48941535 | None:intergenic |
| ACTCGATTATATTGCAGATT+TGG | 0.254957 | 3.1:+48940878 | MS.gene05749:CDS |
| ACATGACCAAGATCTGATTT+TGG | 0.271978 | 3.1:-48940239 | None:intergenic |
| GTATACCGTTTGAGCCTCTT+TGG | 0.278573 | 3.1:-48940338 | None:intergenic |
| TCTATACCAGTCATTCTCTT+TGG | 0.283664 | 3.1:-48940026 | None:intergenic |
| GAATAGGCTGAGGGAGCTTC+AGG | 0.311474 | 3.1:+48941699 | MS.gene05749:CDS |
| ATAAGAGAGCTGAGGTGAAT+AGG | 0.348904 | 3.1:+48941683 | MS.gene05749:CDS |
| CTATACCAGTCATTCTCTTT+GGG | 0.366385 | 3.1:-48940025 | None:intergenic |
| GAGGTTGTGGCCTGTGGGTA+GGG | 0.414240 | 3.1:+48942139 | MS.gene05749:CDS |
| TTCGACCATGGCAACCCTCT+TGG | 0.419659 | 3.1:+48940129 | MS.gene05749:CDS |
| ATGTTTGATTTCTTAGACCC+TGG | 0.427163 | 3.1:-48940071 | None:intergenic |
| TGAGGTTGTGGCCTGTGGGT+AGG | 0.436971 | 3.1:+48942138 | MS.gene05749:CDS |
| TATTGCAGATTTGGAACAGA+TGG | 0.461511 | 3.1:+48940887 | MS.gene05749:CDS |
| AGTATACCAAAATCAGATCT+TGG | 0.466062 | 3.1:+48940233 | MS.gene05749:CDS |
| ACAAATATATGTTGAGGTTG+TGG | 0.473568 | 3.1:+48942126 | MS.gene05749:CDS |
| TTTCATAGGCTTCAACTTGT+GGG | 0.474934 | 3.1:-48941481 | None:intergenic |
| TCTTGGATGAGCATCGGCCT+TGG | 0.498298 | 3.1:+48940146 | MS.gene05749:CDS |
| TGGATCCAAAGAGGCTCAAA+CGG | 0.512756 | 3.1:+48940333 | MS.gene05749:CDS |
| CAATTTCAAGTCTTAATTGG+TGG | 0.516892 | 3.1:-48941532 | None:intergenic |
| AAACAAGAGGCAAGTAGCAG+TGG | 0.526381 | 3.1:+48940170 | MS.gene05749:CDS |
| GAGCTGAGGTGAATAGGCTG+AGG | 0.526514 | 3.1:+48941689 | MS.gene05749:CDS |
| GGCATCCCAAAGAGAATGAC+TGG | 0.531715 | 3.1:+48940020 | MS.gene05749:CDS |
| TTGCAAACAGAAGAGGGACC+AGG | 0.534478 | 3.1:+48940053 | MS.gene05749:CDS |
| CTTCATCAGCATTTCGACCA+TGG | 0.539881 | 3.1:+48940117 | MS.gene05749:CDS |
| AGGCTTCAACTTGTGGGCGA+AGG | 0.567374 | 3.1:-48941475 | None:intergenic |
| GACATGTTGCAAACAGAAGA+GGG | 0.570026 | 3.1:+48940047 | MS.gene05749:CDS |
| TATGTTGAGGTTGTGGCCTG+TGG | 0.572627 | 3.1:+48942133 | MS.gene05749:CDS |
| GGTAGTGCATCTGCAGATGT+TGG | 0.573551 | 3.1:+48940284 | MS.gene05749:CDS |
| TACTTGCCTCTTGTTTACCA+AGG | 0.574650 | 3.1:-48940163 | None:intergenic |
| GGGCTCCAAACCCTACCCAC+AGG | 0.586649 | 3.1:-48942149 | None:intergenic |
| CTCATCCAAGAGGGTTGCCA+TGG | 0.587878 | 3.1:-48940134 | None:intergenic |
| GCATCTGCAGATGTTGGTGT+TGG | 0.594426 | 3.1:+48940290 | MS.gene05749:CDS |
| ATGGTTAGACCCTTCTCACA+TGG | 0.603263 | 3.1:+48940092 | MS.gene05749:CDS |
| AGACATGTTGCAAACAGAAG+AGG | 0.606951 | 3.1:+48940046 | MS.gene05749:CDS |
| TAGTATACAAATATATGTTG+AGG | 0.607017 | 3.1:+48942120 | MS.gene05749:intron |
| GATTGAGAATAAGAGAGCTG+AGG | 0.610144 | 3.1:+48941675 | MS.gene05749:CDS |
| TTTCTGAAGCACAAAACAAG+AGG | 0.611292 | 3.1:+48941731 | MS.gene05749:CDS |
| AGCTGAGGTGAATAGGCTGA+GGG | 0.614102 | 3.1:+48941690 | MS.gene05749:CDS |
| AGGCCGATGCTCATCCAAGA+GGG | 0.614873 | 3.1:-48940143 | None:intergenic |
| ATGTTGAGGTTGTGGCCTGT+GGG | 0.615329 | 3.1:+48942134 | MS.gene05749:CDS |
| GATGAAGATCCATGTGAGAA+GGG | 0.623366 | 3.1:-48940101 | None:intergenic |
| AAAGAAAGGATACTTCAAGA+AGG | 0.624481 | 3.1:+48941566 | MS.gene05749:CDS |
| TGCAAACAGAAGAGGGACCA+GGG | 0.636486 | 3.1:+48940054 | MS.gene05749:CDS |
| CAACCCTCTTGGATGAGCAT+CGG | 0.637743 | 3.1:+48940140 | MS.gene05749:CDS |
| CATCGGCCTTGGTAAACAAG+AGG | 0.639464 | 3.1:+48940157 | MS.gene05749:CDS |
| TGATGAAGATCCATGTGAGA+AGG | 0.644091 | 3.1:-48940102 | None:intergenic |
| GAGAAGAAACACATCAGTGG+TGG | 0.678185 | 3.1:+48940263 | MS.gene05749:CDS |
| AAGGCCGATGCTCATCCAAG+AGG | 0.678512 | 3.1:-48940144 | None:intergenic |
| AGGGTCTAAGAAATCAAACA+TGG | 0.688111 | 3.1:+48940073 | MS.gene05749:CDS |
| GTTGAGAAGAAACACATCAG+TGG | 0.702052 | 3.1:+48940260 | MS.gene05749:CDS |
| AAGCCTATGAAAATCAGCAG+CGG | 0.717215 | 3.1:+48941492 | MS.gene05749:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTAAAAATTCATAATTA+AGG | + | chr3.1:48941829-48941848 | MS.gene05749:intron | 10.0% |
| !! | ATTAAAATAAATCTATCTGT+TGG | + | chr3.1:48940642-48940661 | MS.gene05749:intron | 15.0% |
| !! | TATCATACATGATAAAAATA+TGG | + | chr3.1:48941872-48941891 | MS.gene05749:intron | 15.0% |
| !! | TTTCAATTTCAATTTCAATT+TGG | - | chr3.1:48941082-48941101 | None:intergenic | 15.0% |
| !!! | ATATTATATTGATTTTGTGT+AGG | - | chr3.1:48940775-48940794 | None:intergenic | 15.0% |
| !!! | GAATTTTTAAACAACAATTT+AGG | - | chr3.1:48941822-48941841 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTTGGATAGATA+TGG | - | chr3.1:48941404-48941423 | None:intergenic | 15.0% |
| !! | CAAATCAACTATATTAGATA+GGG | - | chr3.1:48940711-48940730 | None:intergenic | 20.0% |
| !! | TAGTATACAAATATATGTTG+AGG | + | chr3.1:48942120-48942139 | MS.gene05749:intron | 20.0% |
| !! | TCAAATCAACTATATTAGAT+AGG | - | chr3.1:48940712-48940731 | None:intergenic | 20.0% |
| !! | TCATGTATCAACTTATAATT+TGG | + | chr3.1:48941270-48941289 | MS.gene05749:intron | 20.0% |
| !!! | GATAGAAATTTTGATTCTTA+AGG | + | chr3.1:48940421-48940440 | MS.gene05749:intron | 20.0% |
| !!! | TACTAATGTTATTAGTTTTG+TGG | - | chr3.1:48940217-48940236 | None:intergenic | 20.0% |
| !!! | TCTTCACAAGTATTTTTTTT+TGG | - | chr3.1:48941414-48941433 | None:intergenic | 20.0% |
| !!! | TTTTATCTTATCTTGTTCTT+AGG | + | chr3.1:48940811-48940830 | MS.gene05749:intron | 20.0% |
| !!! | TTTTGACAAAAGTTCTATTT+AGG | + | chr3.1:48940541-48940560 | MS.gene05749:intron | 20.0% |
| ! | AAAATACACACAAACACAAA+GGG | - | chr3.1:48941901-48941920 | None:intergenic | 25.0% |
| ! | AAGCAATAAAAACAATCAGT+TGG | + | chr3.1:48940380-48940399 | MS.gene05749:intron | 25.0% |
| ! | ACACGTGAACATATATTAAT+AGG | - | chr3.1:48940978-48940997 | None:intergenic | 25.0% |
| !!! | CATTTATCGGATTTTTTTTC+AGG | - | chr3.1:48940495-48940514 | None:intergenic | 25.0% |
| !!! | TTGAGATATTTTTTACATGC+AGG | + | chr3.1:48941439-48941458 | MS.gene05749:intron | 25.0% |
| !!! | TTTTTTTGGATAGATATGGT+GGG | - | chr3.1:48941400-48941419 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGGATAGATATGG+TGG | - | chr3.1:48941401-48941420 | None:intergenic | 25.0% |
| AAAGAAAGGATACTTCAAGA+AGG | + | chr3.1:48941566-48941585 | MS.gene05749:CDS | 30.0% | |
| AAATACACACAAACACAAAG+GGG | - | chr3.1:48941900-48941919 | None:intergenic | 30.0% | |
| ACAAATATATGTTGAGGTTG+TGG | + | chr3.1:48942126-48942145 | MS.gene05749:CDS | 30.0% | |
| ACAGATGGAAAAATATTTGC+AGG | + | chr3.1:48940902-48940921 | MS.gene05749:CDS | 30.0% | |
| ACTCGATTATATTGCAGATT+TGG | + | chr3.1:48940878-48940897 | MS.gene05749:CDS | 30.0% | |
| AGTATACCAAAATCAGATCT+TGG | + | chr3.1:48940233-48940252 | MS.gene05749:CDS | 30.0% | |
| AGTGAGAGAATATAGATAGA+AGG | + | chr3.1:48941951-48941970 | MS.gene05749:intron | 30.0% | |
| ATAGATCGATTATGATCGAA+TGG | - | chr3.1:48941250-48941269 | None:intergenic | 30.0% | |
| ATTGATGAACCTAAACAACA+AGG | + | chr3.1:48941364-48941383 | MS.gene05749:intron | 30.0% | |
| CAGTTGGCAAGTTAAAAATA+TGG | + | chr3.1:48940396-48940415 | MS.gene05749:intron | 30.0% | |
| GAAAATACACACAAACACAA+AGG | - | chr3.1:48941902-48941921 | None:intergenic | 30.0% | |
| TGATCAAGCAACACAAAAAT+TGG | + | chr3.1:48940313-48940332 | MS.gene05749:CDS | 30.0% | |
| TTGATGAACCTAAACAACAA+GGG | + | chr3.1:48941365-48941384 | MS.gene05749:intron | 30.0% | |
| TTGCTGTAAGAGAAAAAGAA+AGG | + | chr3.1:48941552-48941571 | MS.gene05749:CDS | 30.0% | |
| TTGGCAAGTTAAAAATATGG+AGG | + | chr3.1:48940399-48940418 | MS.gene05749:intron | 30.0% | |
| ! | CAATTTCAAGTCTTAATTGG+TGG | - | chr3.1:48941535-48941554 | None:intergenic | 30.0% |
| ! | CAGCAATTTCAAGTCTTAAT+TGG | - | chr3.1:48941538-48941557 | None:intergenic | 30.0% |
| ! | GTTCTATTTAGGCTTTATCA+TGG | + | chr3.1:48940552-48940571 | MS.gene05749:intron | 30.0% |
| !!! | TTATTAGTTTTGTGGTCTTG+TGG | - | chr3.1:48940209-48940228 | None:intergenic | 30.0% |
| AAAATCCGATAAATGCGAGT+TGG | + | chr3.1:48940500-48940519 | MS.gene05749:intron | 35.0% | |
| ACATACTCGTGTGAAACAAA+TGG | - | chr3.1:48941641-48941660 | None:intergenic | 35.0% | |
| AGGGTCTAAGAAATCAAACA+TGG | + | chr3.1:48940073-48940092 | MS.gene05749:CDS | 35.0% | |
| CACAAAAATTGGATCCAAAG+AGG | + | chr3.1:48940324-48940343 | MS.gene05749:CDS | 35.0% | |
| CTATACCAGTCATTCTCTTT+GGG | - | chr3.1:48940028-48940047 | None:intergenic | 35.0% | |
| TAGAACCAACTCGCATTTAT+CGG | - | chr3.1:48940508-48940527 | None:intergenic | 35.0% | |
| TCTATACCAGTCATTCTCTT+TGG | - | chr3.1:48940029-48940048 | None:intergenic | 35.0% | |
| TTTCATAGGCTTCAACTTGT+GGG | - | chr3.1:48941484-48941503 | None:intergenic | 35.0% | |
| ! | ACATGACCAAGATCTGATTT+TGG | - | chr3.1:48940242-48940261 | None:intergenic | 35.0% |
| ! | ATGTTTGATTTCTTAGACCC+TGG | - | chr3.1:48940074-48940093 | None:intergenic | 35.0% |
| ! | CAATTGCTCTAGATGTAGAA+CGG | + | chr3.1:48941137-48941156 | MS.gene05749:intron | 35.0% |
| ! | TATTGCAGATTTGGAACAGA+TGG | + | chr3.1:48940887-48940906 | MS.gene05749:CDS | 35.0% |
| ! | TTTTCATAGGCTTCAACTTG+TGG | - | chr3.1:48941485-48941504 | None:intergenic | 35.0% |
| !! | AATGCGAGTTGGTTCTATTT+AGG | + | chr3.1:48940511-48940530 | MS.gene05749:intron | 35.0% |
| !! | ATATGGATCCCTTGTTGTTT+AGG | - | chr3.1:48941376-48941395 | None:intergenic | 35.0% |
| !! | TTTCTGAAGCACAAAACAAG+AGG | + | chr3.1:48941731-48941750 | MS.gene05749:CDS | 35.0% |
| AAGCCTATGAAAATCAGCAG+CGG | + | chr3.1:48941492-48941511 | MS.gene05749:CDS | 40.0% | |
| AGACATGTTGCAAACAGAAG+AGG | + | chr3.1:48940046-48940065 | MS.gene05749:CDS | 40.0% | |
| ATAAGAGAGCTGAGGTGAAT+AGG | + | chr3.1:48941683-48941702 | MS.gene05749:CDS | 40.0% | |
| CTTAAGGCTAAACGTGTGAT+GGG | + | chr3.1:48940437-48940456 | MS.gene05749:intron | 40.0% | |
| GACATGTTGCAAACAGAAGA+GGG | + | chr3.1:48940047-48940066 | MS.gene05749:CDS | 40.0% | |
| GATGAAGATCCATGTGAGAA+GGG | - | chr3.1:48940104-48940123 | None:intergenic | 40.0% | |
| GATTGAGAATAAGAGAGCTG+AGG | + | chr3.1:48941675-48941694 | MS.gene05749:CDS | 40.0% | |
| GTTGAGAAGAAACACATCAG+TGG | + | chr3.1:48940260-48940279 | MS.gene05749:CDS | 40.0% | |
| TCTTAAGGCTAAACGTGTGA+TGG | + | chr3.1:48940436-48940455 | MS.gene05749:intron | 40.0% | |
| TGATGAAGATCCATGTGAGA+AGG | - | chr3.1:48940105-48940124 | None:intergenic | 40.0% | |
| ! | GGATAGATATGGTGGGAATA+TGG | - | chr3.1:48941393-48941412 | None:intergenic | 40.0% |
| ! | TACTTGCCTCTTGTTTACCA+AGG | - | chr3.1:48940166-48940185 | None:intergenic | 40.0% |
| AAACAAGAGGCAAGTAGCAG+TGG | + | chr3.1:48940170-48940189 | MS.gene05749:CDS | 45.0% | |
| ATGGTTAGACCCTTCTCACA+TGG | + | chr3.1:48940092-48940111 | MS.gene05749:CDS | 45.0% | |
| CTTCATCAGCATTTCGACCA+TGG | + | chr3.1:48940117-48940136 | MS.gene05749:CDS | 45.0% | |
| GAGAAGAAACACATCAGTGG+TGG | + | chr3.1:48940263-48940282 | MS.gene05749:CDS | 45.0% | |
| GTATACCGTTTGAGCCTCTT+TGG | - | chr3.1:48940341-48940360 | None:intergenic | 45.0% | |
| TGGATCCAAAGAGGCTCAAA+CGG | + | chr3.1:48940333-48940352 | MS.gene05749:CDS | 45.0% | |
| !!! | CAACCGCTGCTGATTTTCAT+AGG | - | chr3.1:48941498-48941517 | None:intergenic | 45.0% |
| !!! | TAAATTTGTTTTTTATTTTA+AGG | - | chr3.1:48942096-48942115 | None:intergenic | 5.0% |
| ACACCATTCGCTTTCGCGAT+TGG | - | chr3.1:48941023-48941042 | None:intergenic | 50.0% | |
| ACCATTCGCTTTCGCGATTG+GGG | - | chr3.1:48941021-48941040 | None:intergenic | 50.0% | |
| AGCTGAGGTGAATAGGCTGA+GGG | + | chr3.1:48941690-48941709 | MS.gene05749:CDS | 50.0% | |
| ATGTTGAGGTTGTGGCCTGT+GGG | + | chr3.1:48942134-48942153 | MS.gene05749:CDS | 50.0% | |
| CAACCCTCTTGGATGAGCAT+CGG | + | chr3.1:48940140-48940159 | MS.gene05749:CDS | 50.0% | |
| CACCATTCGCTTTCGCGATT+GGG | - | chr3.1:48941022-48941041 | None:intergenic | 50.0% | |
| CATCGGCCTTGGTAAACAAG+AGG | + | chr3.1:48940157-48940176 | MS.gene05749:CDS | 50.0% | |
| GCATCTGCAGATGTTGGTGT+TGG | + | chr3.1:48940290-48940309 | MS.gene05749:CDS | 50.0% | |
| GGCATCCCAAAGAGAATGAC+TGG | + | chr3.1:48940020-48940039 | MS.gene05749:CDS | 50.0% | |
| GGTAGTGCATCTGCAGATGT+TGG | + | chr3.1:48940284-48940303 | MS.gene05749:CDS | 50.0% | |
| TATGTTGAGGTTGTGGCCTG+TGG | + | chr3.1:48942133-48942152 | MS.gene05749:CDS | 50.0% | |
| TGCAAACAGAAGAGGGACCA+GGG | + | chr3.1:48940054-48940073 | MS.gene05749:CDS | 50.0% | |
| TTGCAAACAGAAGAGGGACC+AGG | + | chr3.1:48940053-48940072 | MS.gene05749:CDS | 50.0% | |
| ! | TGCTCTAGATGTAGAACGGC+TGG | + | chr3.1:48941141-48941160 | MS.gene05749:intron | 50.0% |
| AAGGCCGATGCTCATCCAAG+AGG | - | chr3.1:48940147-48940166 | None:intergenic | 55.0% | |
| AGGCCGATGCTCATCCAAGA+GGG | - | chr3.1:48940146-48940165 | None:intergenic | 55.0% | |
| AGGCTTCAACTTGTGGGCGA+AGG | - | chr3.1:48941478-48941497 | None:intergenic | 55.0% | |
| CTCATCCAAGAGGGTTGCCA+TGG | - | chr3.1:48940137-48940156 | None:intergenic | 55.0% | |
| GAATAGGCTGAGGGAGCTTC+AGG | + | chr3.1:48941699-48941718 | MS.gene05749:CDS | 55.0% | |
| GAGCTGAGGTGAATAGGCTG+AGG | + | chr3.1:48941689-48941708 | MS.gene05749:CDS | 55.0% | |
| TCCCCAATCGCGAAAGCGAA+TGG | + | chr3.1:48941017-48941036 | MS.gene05749:intron | 55.0% | |
| TTCGACCATGGCAACCCTCT+TGG | + | chr3.1:48940129-48940148 | MS.gene05749:CDS | 55.0% | |
| !! | TCTTGGATGAGCATCGGCCT+TGG | + | chr3.1:48940146-48940165 | MS.gene05749:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 48940014 | 48942159 | 48940014 | ID=MS.gene05749 |
| chr3.1 | mRNA | 48940014 | 48942159 | 48940014 | ID=MS.gene05749.t1;Parent=MS.gene05749 |
| chr3.1 | exon | 48940014 | 48940354 | 48940014 | ID=MS.gene05749.t1.exon1;Parent=MS.gene05749.t1 |
| chr3.1 | CDS | 48940014 | 48940354 | 48940014 | ID=cds.MS.gene05749.t1;Parent=MS.gene05749.t1 |
| chr3.1 | exon | 48940833 | 48940923 | 48940833 | ID=MS.gene05749.t1.exon2;Parent=MS.gene05749.t1 |
| chr3.1 | CDS | 48940833 | 48940923 | 48940833 | ID=cds.MS.gene05749.t1;Parent=MS.gene05749.t1 |
| chr3.1 | exon | 48941461 | 48941587 | 48941461 | ID=MS.gene05749.t1.exon3;Parent=MS.gene05749.t1 |
| chr3.1 | CDS | 48941461 | 48941587 | 48941461 | ID=cds.MS.gene05749.t1;Parent=MS.gene05749.t1 |
| chr3.1 | exon | 48941671 | 48941752 | 48941671 | ID=MS.gene05749.t1.exon4;Parent=MS.gene05749.t1 |
| chr3.1 | CDS | 48941671 | 48941752 | 48941671 | ID=cds.MS.gene05749.t1;Parent=MS.gene05749.t1 |
| chr3.1 | exon | 48942123 | 48942159 | 48942123 | ID=MS.gene05749.t1.exon5;Parent=MS.gene05749.t1 |
| chr3.1 | CDS | 48942123 | 48942159 | 48942123 | ID=cds.MS.gene05749.t1;Parent=MS.gene05749.t1 |
| Gene Sequence |
| Protein sequence |