Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05750.t1 | XP_024634655.1 | 73.9 | 207 | 39 | 1 | 8 | 214 | 1 | 192 | 2.00E-68 | 269.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05750.t1 | Q5JMK6 | 41.1 | 129 | 69 | 2 | 108 | 234 | 137 | 260 | 1.7e-12 | 74.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05750.t1 | A0A1S3E8J2 | 47.1 | 240 | 95 | 6 | 1 | 211 | 17 | 253 | 1.1e-41 | 179.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05750.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05750.t1 | MTR_3g465280 | 65.333 | 75 | 22 | 3 | 22 | 95 | 9 | 80 | 1.30e-23 | 97.4 |
| MS.gene05750.t1 | MTR_3g465280 | 46.667 | 120 | 52 | 6 | 1 | 117 | 83 | 193 | 1.06e-18 | 84.0 |
| MS.gene05750.t1 | MTR_2g090900 | 44.211 | 95 | 53 | 0 | 108 | 202 | 191 | 285 | 1.19e-17 | 81.6 |
| MS.gene05750.t1 | MTR_2g090900 | 44.211 | 95 | 53 | 0 | 108 | 202 | 191 | 285 | 1.43e-17 | 81.3 |
| MS.gene05750.t1 | MTR_4g079500 | 43.158 | 95 | 54 | 0 | 108 | 202 | 194 | 288 | 1.87e-17 | 80.9 |
| MS.gene05750.t1 | MTR_6g034945 | 38.532 | 109 | 67 | 0 | 107 | 215 | 150 | 258 | 1.17e-13 | 70.1 |
| MS.gene05750.t1 | MTR_5g075390 | 33.858 | 127 | 76 | 1 | 82 | 200 | 125 | 251 | 4.25e-13 | 68.6 |
| MS.gene05750.t1 | MTR_2g099050 | 38.542 | 96 | 59 | 0 | 107 | 202 | 220 | 315 | 7.63e-13 | 68.2 |
| MS.gene05750.t1 | MTR_4g072090 | 35.455 | 110 | 71 | 0 | 108 | 217 | 360 | 469 | 9.17e-13 | 68.2 |
| MS.gene05750.t1 | MTR_3g467120 | 39.362 | 94 | 57 | 0 | 107 | 200 | 176 | 269 | 9.99e-13 | 67.8 |
| MS.gene05750.t1 | MTR_3g094020 | 33.333 | 132 | 79 | 2 | 78 | 200 | 69 | 200 | 2.92e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05750.t1 | AT3G58120 | 41.593 | 113 | 65 | 1 | 90 | 202 | 185 | 296 | 5.04e-19 | 85.5 |
| MS.gene05750.t1 | AT2G42380 | 36.620 | 142 | 85 | 3 | 90 | 230 | 168 | 305 | 8.39e-19 | 84.7 |
| MS.gene05750.t1 | AT3G58120 | 43.299 | 97 | 54 | 1 | 90 | 186 | 185 | 280 | 7.44e-17 | 79.0 |
| MS.gene05750.t1 | AT2G42380 | 41.237 | 97 | 57 | 0 | 90 | 186 | 168 | 264 | 1.37e-16 | 77.8 |
| MS.gene05750.t1 | AT2G42380 | 33.099 | 142 | 79 | 4 | 90 | 230 | 168 | 294 | 2.10e-13 | 69.3 |
| MS.gene05750.t1 | AT1G43700 | 34.194 | 155 | 91 | 4 | 56 | 200 | 133 | 286 | 3.46e-13 | 68.9 |
| MS.gene05750.t1 | AT1G06070 | 28.191 | 188 | 114 | 4 | 31 | 202 | 122 | 304 | 8.27e-13 | 68.2 |
| MS.gene05750.t1 | AT2G40620 | 39.362 | 94 | 57 | 0 | 107 | 200 | 147 | 240 | 1.04e-12 | 67.8 |
| MS.gene05750.t1 | AT5G07160 | 40.860 | 93 | 55 | 0 | 108 | 200 | 48 | 140 | 1.15e-12 | 64.7 |
| MS.gene05750.t1 | AT2G31370 | 37.736 | 106 | 66 | 0 | 107 | 212 | 200 | 305 | 1.29e-12 | 67.4 |
| MS.gene05750.t1 | AT1G06850 | 40.426 | 94 | 56 | 0 | 107 | 200 | 147 | 240 | 1.49e-12 | 67.0 |
| MS.gene05750.t1 | AT2G31370 | 37.736 | 106 | 66 | 0 | 107 | 212 | 200 | 305 | 2.03e-12 | 67.0 |
| MS.gene05750.t1 | AT2G31370 | 37.736 | 106 | 66 | 0 | 107 | 212 | 200 | 305 | 2.03e-12 | 67.0 |
| MS.gene05750.t1 | AT2G31370 | 37.736 | 106 | 66 | 0 | 107 | 212 | 200 | 305 | 2.03e-12 | 67.0 |
| MS.gene05750.t1 | AT2G31370 | 37.736 | 106 | 66 | 0 | 107 | 212 | 200 | 305 | 2.03e-12 | 67.0 |
| MS.gene05750.t1 | AT2G31370 | 37.736 | 106 | 66 | 0 | 107 | 212 | 200 | 305 | 2.03e-12 | 67.0 |
| MS.gene05750.t1 | AT2G31370 | 37.736 | 106 | 66 | 0 | 107 | 212 | 200 | 305 | 2.03e-12 | 67.0 |
| MS.gene05750.t1 | AT4G38900 | 37.634 | 93 | 58 | 0 | 108 | 200 | 394 | 486 | 2.96e-12 | 66.6 |
| MS.gene05750.t1 | AT4G38900 | 37.634 | 93 | 58 | 0 | 108 | 200 | 394 | 486 | 2.96e-12 | 66.6 |
| MS.gene05750.t1 | AT2G21230 | 37.383 | 107 | 62 | 1 | 108 | 214 | 370 | 471 | 1.40e-11 | 64.7 |
| MS.gene05750.t1 | AT2G21230 | 37.383 | 107 | 62 | 1 | 108 | 214 | 370 | 471 | 1.40e-11 | 64.7 |
Find 63 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCGATTTCAAGTCTTAAT+TGG | 0.217186 | 3.1:+48980382 | None:intergenic |
| GCTCGATTATATTGCTGATT+TGG | 0.235809 | 3.1:-48981036 | MS.gene05750:CDS |
| GCATGACCAAGATTTGATTT+TGG | 0.261059 | 3.1:+48981684 | None:intergenic |
| AGACCAAACGGTTCAAATTA+AGG | 0.265368 | 3.1:+48979631 | None:intergenic |
| TTTGTACCAGTCATTCTCTT+TGG | 0.270280 | 3.1:+48981897 | None:intergenic |
| CTAACCATGTTTGATTTCTT+AGG | 0.274809 | 3.1:+48981846 | None:intergenic |
| TTGTACCAGTCATTCTCTTT+GGG | 0.334410 | 3.1:+48981898 | None:intergenic |
| ATAAGAGAGCTGAGCTGAAT+AGG | 0.366186 | 3.1:-48980229 | MS.gene05750:CDS |
| GTGGCCGATGGGAAGGGGTT+CGG | 0.372610 | 3.1:-48979767 | MS.gene05750:CDS |
| TCAGCAGTGGTTGTTGACTA+TGG | 0.374097 | 3.1:-48980412 | MS.gene05750:CDS |
| AAAACCATTGTAAACAATAT+CGG | 0.404804 | 3.1:+48979661 | None:intergenic |
| GAGGTTGGTGGCCGATGGGA+AGG | 0.414967 | 3.1:-48979774 | MS.gene05750:CDS |
| TTCGACCATGGCAACCCTCT+TGG | 0.426532 | 3.1:-48981794 | MS.gene05750:CDS |
| AGGTTGGTGGCCGATGGGAA+GGG | 0.436989 | 3.1:-48979773 | MS.gene05750:CDS |
| GTATACCGTTTGAGCCTCTT+CGG | 0.444805 | 3.1:+48981585 | None:intergenic |
| TTCTTAGGATCCTAGCAAAT+CGG | 0.449690 | 3.1:-48981088 | MS.gene05750:intron |
| AGTGTACCAAAATCAAATCT+TGG | 0.459311 | 3.1:-48981690 | MS.gene05750:CDS |
| TTGCTGAAGCACAAAATAAG+AGG | 0.463134 | 3.1:-48980181 | MS.gene05750:intron |
| GGAAATTCAGACCGAAAAGC+AGG | 0.473906 | 3.1:+48979740 | None:intergenic |
| GGTTGGTGGCCGATGGGAAG+GGG | 0.486046 | 3.1:-48979772 | MS.gene05750:CDS |
| CAGATATATGTTGAGGTTGG+TGG | 0.507430 | 3.1:-48979786 | MS.gene05750:CDS |
| TGGATCCGAAGAGGCTCAAA+CGG | 0.511736 | 3.1:-48981590 | MS.gene05750:intron |
| AAACAAGAGGCGAGTAGCAG+TGG | 0.519033 | 3.1:-48981753 | MS.gene05750:CDS |
| CGATTTCAAGTCTTAATTGG+TGG | 0.523508 | 3.1:+48980385 | None:intergenic |
| GAATTTCCTACTGTTAAAAG+AGG | 0.525859 | 3.1:-48979725 | MS.gene05750:CDS |
| GTGCAGAAGTCCGATTTGCT+AGG | 0.528204 | 3.1:+48981078 | None:intergenic |
| TATTGCTGATTTGGAGCGGA+AGG | 0.534850 | 3.1:-48981027 | MS.gene05750:CDS |
| AGACTTCAACTTGTGGGCGA+AGG | 0.537269 | 3.1:+48980442 | None:intergenic |
| GGCATCCCAAAGAGAATGAC+TGG | 0.538746 | 3.1:-48981903 | MS.gene05750:CDS |
| GAGCTGAGCTGAATAGGCTG+AGG | 0.543232 | 3.1:-48980223 | MS.gene05750:CDS |
| AACATGTTGCACACAGAAGA+GGG | 0.550817 | 3.1:-48981876 | MS.gene05750:CDS |
| TTGCACACAGAAGAGGGACC+TGG | 0.552875 | 3.1:-48981870 | MS.gene05750:CDS |
| ATGTTTGATTTCTTAGGCCC+AGG | 0.557475 | 3.1:+48981852 | None:intergenic |
| CTCTTCCAAGAGGGTTGCCA+TGG | 0.560623 | 3.1:+48981789 | None:intergenic |
| GCATCTGCATGTGTTGGTGT+TGG | 0.564639 | 3.1:-48981633 | MS.gene05750:CDS |
| GGCTCCGAACCCCTTCCCAT+CGG | 0.566207 | 3.1:+48979763 | None:intergenic |
| GGTAGTGCATCTGCATGTGT+TGG | 0.568494 | 3.1:-48981639 | MS.gene05750:CDS |
| ATGTTGAGGTTGGTGGCCGA+TGG | 0.585051 | 3.1:-48979779 | MS.gene05750:CDS |
| TAGTACACAGATATATGTTG+AGG | 0.585809 | 3.1:-48979793 | MS.gene05750:intron |
| TACTCGCCTCTTGTTTATCG+AGG | 0.587188 | 3.1:+48981760 | None:intergenic |
| TGCACACAGAAGAGGGACCT+GGG | 0.596481 | 3.1:-48981869 | MS.gene05750:CDS |
| GAAATTCAGACCGAAAAGCA+GGG | 0.601336 | 3.1:+48979741 | None:intergenic |
| GTGGCCGATATTGTTTACAA+TGG | 0.601931 | 3.1:-48979665 | MS.gene05750:CDS |
| ATGGTTAGACCCTTCTCACA+TGG | 0.603263 | 3.1:-48981831 | MS.gene05750:CDS |
| AAACATGTTGCACACAGAAG+AGG | 0.606246 | 3.1:-48981877 | MS.gene05750:CDS |
| AGCTGAGCTGAATAGGCTGA+GGG | 0.608093 | 3.1:-48980222 | MS.gene05750:CDS |
| ACACAGATATATGTTGAGGT+TGG | 0.611108 | 3.1:-48979789 | MS.gene05750:intron |
| CATCATCAACATTTCGACCA+TGG | 0.616367 | 3.1:-48981806 | MS.gene05750:CDS |
| ACCTCCAGATCTTAAAAGTG+TGG | 0.616389 | 3.1:-48979684 | MS.gene05750:CDS |
| TGTTGAGGTTGGTGGCCGAT+GGG | 0.619290 | 3.1:-48979778 | MS.gene05750:CDS |
| AAAGAAAGGATACTTCAAGA+AGG | 0.624481 | 3.1:-48980351 | MS.gene05750:intron |
| GATGATGATCCATGTGAGAA+GGG | 0.625849 | 3.1:+48981822 | None:intergenic |
| CATTGACCTCGATAAACAAG+AGG | 0.636248 | 3.1:-48981766 | MS.gene05750:CDS |
| ATGCACTACCACCACTGATG+TGG | 0.638397 | 3.1:+48981652 | None:intergenic |
| AGGTCAATGCTCTTCCAAGA+GGG | 0.642523 | 3.1:+48981780 | None:intergenic |
| TGATGATGATCCATGTGAGA+AGG | 0.644091 | 3.1:+48981821 | None:intergenic |
| GCTGAGAAGAACCACATCAG+TGG | 0.651233 | 3.1:-48981663 | MS.gene05750:CDS |
| GGACTTCTGCACAGAAATCG+AGG | 0.651506 | 3.1:-48981067 | MS.gene05750:CDS |
| ATTATATTGCTGATTTGGAG+CGG | 0.651960 | 3.1:-48981031 | MS.gene05750:CDS |
| GAGGTCAATGCTCTTCCAAG+AGG | 0.655392 | 3.1:+48981779 | None:intergenic |
| GAGAAGAACCACATCAGTGG+TGG | 0.658310 | 3.1:-48981660 | MS.gene05750:CDS |
| AAATTCAGACCGAAAAGCAG+GGG | 0.669170 | 3.1:+48979742 | None:intergenic |
| TGGGCCTAAGAAATCAAACA+TGG | 0.705886 | 3.1:-48981850 | MS.gene05750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTTCAATTTCAATT+TGG | + | chr3.1:48980723-48980742 | None:intergenic | 10.0% |
| !! | ATTAAAATAAATCTATATGT+TGG | - | chr3.1:48980248-48980267 | MS.gene05750:intron | 10.0% |
| !! | TGAAAAAAAAATCTAATAAT+AGG | - | chr3.1:48980132-48980151 | MS.gene05750:intron | 10.0% |
| !! | TGTTTAAAAATTCATAATTA+GGG | - | chr3.1:48981467-48981486 | MS.gene05750:intron | 10.0% |
| !! | TTGTTTAAAAATTCATAATT+AGG | - | chr3.1:48981466-48981485 | MS.gene05750:intron | 10.0% |
| !!! | TATTATTAGATTTTTTTTTC+AGG | + | chr3.1:48980133-48980152 | None:intergenic | 10.0% |
| !! | TATAAATGTATAATCTTTGT+TGG | - | chr3.1:48981706-48981725 | MS.gene05750:CDS | 15.0% |
| !! | TATCATACATGATAAAAATA+TGG | - | chr3.1:48981510-48981529 | MS.gene05750:intron | 15.0% |
| !!! | GAATTTTTAAACAACAATTT+AGG | + | chr3.1:48981460-48981479 | None:intergenic | 15.0% |
| !! | AAAACCATTGTAAACAATAT+CGG | + | chr3.1:48981894-48981913 | None:intergenic | 20.0% |
| !! | CAAATTAAAATTCATTGAAG+TGG | + | chr3.1:48980804-48980823 | None:intergenic | 20.0% |
| !! | GTCGATTATTTGTATTAATT+TGG | - | chr3.1:48980823-48980842 | MS.gene05750:intron | 20.0% |
| !!! | AATTTTAAGACATCAATGTA+AGG | + | chr3.1:48981627-48981646 | None:intergenic | 20.0% |
| !!! | ATATTTTATCGATTATGTGT+AGG | + | chr3.1:48980414-48980433 | None:intergenic | 20.0% |
| !!! | ATTTTAAGACATCAATGTAA+GGG | + | chr3.1:48981626-48981645 | None:intergenic | 20.0% |
| !!! | TAAATTTGTCTTTTCTTTCA+AGG | + | chr3.1:48981735-48981754 | None:intergenic | 20.0% |
| !!! | TAATGTTTTTAGTTTTGTTG+TGG | + | chr3.1:48979843-48979862 | None:intergenic | 20.0% |
| ! | AAATTCATTGAAGTGGTAAT+CGG | + | chr3.1:48980797-48980816 | None:intergenic | 25.0% |
| ! | ACAATTGAATTCCAAATTAC+AGG | + | chr3.1:48980918-48980937 | None:intergenic | 25.0% |
| ! | ACATACTCATGTGAAATAAA+TGG | + | chr3.1:48981281-48981300 | None:intergenic | 25.0% |
| ! | AGTTGGCAAGTTAAAAAATA+TGG | - | chr3.1:48980028-48980047 | MS.gene05750:intron | 25.0% |
| ! | ATAGATCGATTATGATTGAA+TGG | + | chr3.1:48980884-48980903 | None:intergenic | 25.0% |
| ! | CAAATCAACTATATTAGTCA+GGG | + | chr3.1:48980323-48980342 | None:intergenic | 25.0% |
| ! | CATAACACTAAAAGTTTGAT+GGG | - | chr3.1:48980070-48980089 | MS.gene05750:intron | 25.0% |
| ! | TAATAGGAGTTGTTCTATTT+AGG | - | chr3.1:48980148-48980167 | MS.gene05750:intron | 25.0% |
| ! | TCAAATCAACTATATTAGTC+AGG | + | chr3.1:48980324-48980343 | None:intergenic | 25.0% |
| ! | TCATAACACTAAAAGTTTGA+TGG | - | chr3.1:48980069-48980088 | MS.gene05750:intron | 25.0% |
| !! | TTTTATAGACTTCAACTTGT+GGG | + | chr3.1:48981119-48981138 | None:intergenic | 25.0% |
| !! | TTTTTATAGACTTCAACTTG+TGG | + | chr3.1:48981120-48981139 | None:intergenic | 25.0% |
| !!! | ATGAGTATGTTTATTTTCAG+TGG | - | chr3.1:48981291-48981310 | MS.gene05750:intron | 25.0% |
| AAAGAAAGGATACTTCAAGA+AGG | - | chr3.1:48981201-48981220 | MS.gene05750:intron | 30.0% | |
| AAGTCTATAAAAATCAGCAG+TGG | - | chr3.1:48981127-48981146 | MS.gene05750:intron | 30.0% | |
| AGTGAGAGAATATAGATAGA+AGG | - | chr3.1:48981589-48981608 | MS.gene05750:intron | 30.0% | |
| AGTGTACCAAAATCAAATCT+TGG | - | chr3.1:48979862-48979881 | MS.gene05750:intron | 30.0% | |
| GAATTTCCTACTGTTAAAAG+AGG | - | chr3.1:48981827-48981846 | MS.gene05750:CDS | 30.0% | |
| GATTCTCATCTAAAGATCAT+AGG | + | chr3.1:48980677-48980696 | None:intergenic | 30.0% | |
| TAGTACACAGATATATGTTG+AGG | - | chr3.1:48981759-48981778 | MS.gene05750:CDS | 30.0% | |
| TGTTTGATCCTAAACAACAA+GGG | - | chr3.1:48981000-48981019 | MS.gene05750:intron | 30.0% | |
| TTGTTTGATCCTAAACAACA+AGG | - | chr3.1:48980999-48981018 | MS.gene05750:intron | 30.0% | |
| ! | CTAACCATGTTTGATTTCTT+AGG | + | chr3.1:48979709-48979728 | None:intergenic | 30.0% |
| ! | TCTCTTCACAAGTTTTTGTT+TGG | + | chr3.1:48981049-48981068 | None:intergenic | 30.0% |
| !! | AGTTTTTGTTTGGGTAGATA+TGG | + | chr3.1:48981039-48981058 | None:intergenic | 30.0% |
| !! | ATTATATTGCTGATTTGGAG+CGG | - | chr3.1:48980521-48980540 | MS.gene05750:intron | 30.0% |
| !! | CTCTTCACAAGTTTTTGTTT+GGG | + | chr3.1:48981048-48981067 | None:intergenic | 30.0% |
| !!! | TTTTTAGTTTTGTTGTGGTG+TGG | + | chr3.1:48979838-48979857 | None:intergenic | 30.0% |
| ACACAGATATATGTTGAGGT+TGG | - | chr3.1:48981763-48981782 | MS.gene05750:CDS | 35.0% | |
| GAAACTACACACAAACACAA+AGG | + | chr3.1:48981540-48981559 | None:intergenic | 35.0% | |
| GTGTAGGAAATAAACAAGCA+AGG | + | chr3.1:48980398-48980417 | None:intergenic | 35.0% | |
| TCACGTATCAACCTGTAATT+TGG | - | chr3.1:48980904-48980923 | MS.gene05750:intron | 35.0% | |
| TCGCTGTAAGAGAAAAAGAA+AGG | - | chr3.1:48981187-48981206 | MS.gene05750:intron | 35.0% | |
| TGAGCAACACAAAAATCAGT+TGG | - | chr3.1:48980011-48980030 | MS.gene05750:intron | 35.0% | |
| TGATCAAGCAACACAAAAAC+TGG | - | chr3.1:48979942-48979961 | MS.gene05750:intron | 35.0% | |
| TGTTCTATTTAGGCTTGTCA+TGG | - | chr3.1:48980158-48980177 | MS.gene05750:intron | 35.0% | |
| TTCTTAGGATCCTAGCAAAT+CGG | - | chr3.1:48980464-48980483 | MS.gene05750:intron | 35.0% | |
| TTGCTGAAGCACAAAATAAG+AGG | - | chr3.1:48981371-48981390 | MS.gene05750:intron | 35.0% | |
| TTGTACCAGTCATTCTCTTT+GGG | + | chr3.1:48979657-48979676 | None:intergenic | 35.0% | |
| TTTGTACCAGTCATTCTCTT+TGG | + | chr3.1:48979658-48979677 | None:intergenic | 35.0% | |
| TTTGTTTGGGTAGATATGGT+GGG | + | chr3.1:48981035-48981054 | None:intergenic | 35.0% | |
| ! | CAGCGATTTCAAGTCTTAAT+TGG | + | chr3.1:48981173-48981192 | None:intergenic | 35.0% |
| ! | CGATTTCAAGTCTTAATTGG+TGG | + | chr3.1:48981170-48981189 | None:intergenic | 35.0% |
| ! | GCTCGATTATATTGCTGATT+TGG | - | chr3.1:48980516-48980535 | MS.gene05750:intron | 35.0% |
| ! | TTTTGTCTTCCGTTGTTCTT+AGG | - | chr3.1:48980449-48980468 | MS.gene05750:CDS | 35.0% |
| !! | ATATGGATCCCTTGTTGTTT+AGG | + | chr3.1:48981011-48981030 | None:intergenic | 35.0% |
| !! | GCATGACCAAGATTTGATTT+TGG | + | chr3.1:48979871-48979890 | None:intergenic | 35.0% |
| !! | TTTTGTTTGGGTAGATATGG+TGG | + | chr3.1:48981036-48981055 | None:intergenic | 35.0% |
| AAACATGTTGCACACAGAAG+AGG | - | chr3.1:48979675-48979694 | MS.gene05750:CDS | 40.0% | |
| AAATTCAGACCGAAAAGCAG+GGG | + | chr3.1:48981813-48981832 | None:intergenic | 40.0% | |
| AACATGTTGCACACAGAAGA+GGG | - | chr3.1:48979676-48979695 | MS.gene05750:CDS | 40.0% | |
| ACCTCCAGATCTTAAAAGTG+TGG | - | chr3.1:48981868-48981887 | MS.gene05750:CDS | 40.0% | |
| AGATCATAGGCTTTCACGAT+CGG | + | chr3.1:48980664-48980683 | None:intergenic | 40.0% | |
| ATAAGAGAGCTGAGCTGAAT+AGG | - | chr3.1:48981323-48981342 | MS.gene05750:intron | 40.0% | |
| CAGATATATGTTGAGGTTGG+TGG | - | chr3.1:48981766-48981785 | MS.gene05750:CDS | 40.0% | |
| CATCATCAACATTTCGACCA+TGG | - | chr3.1:48979746-48979765 | MS.gene05750:CDS | 40.0% | |
| CATTGACCTCGATAAACAAG+AGG | - | chr3.1:48979786-48979805 | MS.gene05750:CDS | 40.0% | |
| GAAATTCAGACCGAAAAGCA+GGG | + | chr3.1:48981814-48981833 | None:intergenic | 40.0% | |
| GATGATGATCCATGTGAGAA+GGG | + | chr3.1:48979733-48979752 | None:intergenic | 40.0% | |
| GCGGAAGGAAAAATATTTGC+AGG | - | chr3.1:48980540-48980559 | MS.gene05750:intron | 40.0% | |
| GTGGCCGATATTGTTTACAA+TGG | - | chr3.1:48981887-48981906 | MS.gene05750:CDS | 40.0% | |
| TGCTAGGATCCTAAGAACAA+CGG | + | chr3.1:48980461-48980480 | None:intergenic | 40.0% | |
| TGGGCCTAAGAAATCAAACA+TGG | - | chr3.1:48979702-48979721 | MS.gene05750:CDS | 40.0% | |
| ! | ATGTTTGATTTCTTAGGCCC+AGG | + | chr3.1:48979703-48979722 | None:intergenic | 40.0% |
| ! | CTATTGCTCTAGATGTAGAG+CGG | - | chr3.1:48980771-48980790 | MS.gene05750:intron | 40.0% |
| ! | TGATGATGATCCATGTGAGA+AGG | + | chr3.1:48979734-48979753 | None:intergenic | 40.0% |
| !! | CTGGAGGTTTTGATCTGATA+TGG | + | chr3.1:48981856-48981875 | None:intergenic | 40.0% |
| AGGTCAATGCTCTTCCAAGA+GGG | + | chr3.1:48979775-48979794 | None:intergenic | 45.0% | |
| ATCATAGGCTTTCACGATCG+GGG | + | chr3.1:48980662-48980681 | None:intergenic | 45.0% | |
| ATGGTTAGACCCTTCTCACA+TGG | - | chr3.1:48979721-48979740 | MS.gene05750:CDS | 45.0% | |
| CACAAAAACTGGATCCGAAG+AGG | - | chr3.1:48979953-48979972 | MS.gene05750:intron | 45.0% | |
| GATCATAGGCTTTCACGATC+GGG | + | chr3.1:48980663-48980682 | None:intergenic | 45.0% | |
| GGAAATTCAGACCGAAAAGC+AGG | + | chr3.1:48981815-48981834 | None:intergenic | 45.0% | |
| GTATACCGTTTGAGCCTCTT+CGG | + | chr3.1:48979970-48979989 | None:intergenic | 45.0% | |
| ! | GGGTAGATATGGTGGGAATA+TGG | + | chr3.1:48981028-48981047 | None:intergenic | 45.0% |
| ! | TACTCGCCTCTTGTTTATCG+AGG | + | chr3.1:48979795-48979814 | None:intergenic | 45.0% |
| ! | TCAGCAGTGGTTGTTGACTA+TGG | - | chr3.1:48981140-48981159 | MS.gene05750:intron | 45.0% |
| ! | TGGCGTCCTCTTTTAACAGT+AGG | + | chr3.1:48981836-48981855 | None:intergenic | 45.0% |
| !! | TATTGCTGATTTGGAGCGGA+AGG | - | chr3.1:48980525-48980544 | MS.gene05750:intron | 45.0% |
| !!! | GCCACACTTTTAAGATCTGG+AGG | + | chr3.1:48981872-48981891 | None:intergenic | 45.0% |
| !!! | TCGGCCACACTTTTAAGATC+TGG | + | chr3.1:48981875-48981894 | None:intergenic | 45.0% |
| AAACAAGAGGCGAGTAGCAG+TGG | - | chr3.1:48979799-48979818 | MS.gene05750:intron | 50.0% | |
| AGACTTCAACTTGTGGGCGA+AGG | + | chr3.1:48981113-48981132 | None:intergenic | 50.0% | |
| AGCTGAGCTGAATAGGCTGA+GGG | - | chr3.1:48981330-48981349 | MS.gene05750:intron | 50.0% | |
| ATGCACTACCACCACTGATG+TGG | + | chr3.1:48979903-48979922 | None:intergenic | 50.0% | |
| GAGAAGAACCACATCAGTGG+TGG | - | chr3.1:48979892-48979911 | MS.gene05750:intron | 50.0% | |
| GAGGTCAATGCTCTTCCAAG+AGG | + | chr3.1:48979776-48979795 | None:intergenic | 50.0% | |
| GCTGAGAAGAACCACATCAG+TGG | - | chr3.1:48979889-48979908 | MS.gene05750:intron | 50.0% | |
| GGACTTCTGCACAGAAATCG+AGG | - | chr3.1:48980485-48980504 | MS.gene05750:intron | 50.0% | |
| GGCATCCCAAAGAGAATGAC+TGG | - | chr3.1:48979649-48979668 | MS.gene05750:CDS | 50.0% | |
| GGTAGTGCATCTGCATGTGT+TGG | - | chr3.1:48979913-48979932 | MS.gene05750:intron | 50.0% | |
| TGGATCCGAAGAGGCTCAAA+CGG | - | chr3.1:48979962-48979981 | MS.gene05750:intron | 50.0% | |
| ! | GCATCTGCATGTGTTGGTGT+TGG | - | chr3.1:48979919-48979938 | MS.gene05750:intron | 50.0% |
| ! | GTGCAGAAGTCCGATTTGCT+AGG | + | chr3.1:48980477-48980496 | None:intergenic | 50.0% |
| CTCTTCCAAGAGGGTTGCCA+TGG | + | chr3.1:48979766-48979785 | None:intergenic | 55.0% | |
| GAGCTGAGCTGAATAGGCTG+AGG | - | chr3.1:48981329-48981348 | MS.gene05750:intron | 55.0% | |
| TGCACACAGAAGAGGGACCT+GGG | - | chr3.1:48979683-48979702 | MS.gene05750:CDS | 55.0% | |
| TTCGACCATGGCAACCCTCT+TGG | - | chr3.1:48979758-48979777 | MS.gene05750:CDS | 55.0% | |
| TTGCACACAGAAGAGGGACC+TGG | - | chr3.1:48979682-48979701 | MS.gene05750:CDS | 55.0% | |
| !! | ATGTTGAGGTTGGTGGCCGA+TGG | - | chr3.1:48981773-48981792 | MS.gene05750:CDS | 55.0% |
| !! | TGTTGAGGTTGGTGGCCGAT+GGG | - | chr3.1:48981774-48981793 | MS.gene05750:CDS | 55.0% |
| !! | AGGTTGGTGGCCGATGGGAA+GGG | - | chr3.1:48981779-48981798 | MS.gene05750:CDS | 60.0% |
| !! | GGTTCGGAGCCCCTGCTTTT+CGG | - | chr3.1:48981801-48981820 | MS.gene05750:CDS | 60.0% |
| GGCTCCGAACCCCTTCCCAT+CGG | + | chr3.1:48981792-48981811 | None:intergenic | 65.0% | |
| GTGGCCGATGGGAAGGGGTT+CGG | - | chr3.1:48981785-48981804 | MS.gene05750:CDS | 65.0% | |
| !! | GAGGTTGGTGGCCGATGGGA+AGG | - | chr3.1:48981778-48981797 | MS.gene05750:CDS | 65.0% |
| !! | GGTTGGTGGCCGATGGGAAG+GGG | - | chr3.1:48981780-48981799 | MS.gene05750:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 48979643 | 48981931 | 48979643 | ID=MS.gene05750 |
| chr3.1 | mRNA | 48979643 | 48981931 | 48979643 | ID=MS.gene05750.t1;Parent=MS.gene05750 |
| chr3.1 | exon | 48981591 | 48981931 | 48981591 | ID=MS.gene05750.t1.exon1;Parent=MS.gene05750.t1 |
| chr3.1 | CDS | 48981591 | 48981931 | 48981591 | ID=cds.MS.gene05750.t1;Parent=MS.gene05750.t1 |
| chr3.1 | exon | 48981013 | 48981103 | 48981013 | ID=MS.gene05750.t1.exon2;Parent=MS.gene05750.t1 |
| chr3.1 | CDS | 48981013 | 48981103 | 48981013 | ID=cds.MS.gene05750.t1;Parent=MS.gene05750.t1 |
| chr3.1 | exon | 48980352 | 48980478 | 48980352 | ID=MS.gene05750.t1.exon3;Parent=MS.gene05750.t1 |
| chr3.1 | CDS | 48980352 | 48980478 | 48980352 | ID=cds.MS.gene05750.t1;Parent=MS.gene05750.t1 |
| chr3.1 | exon | 48980182 | 48980263 | 48980182 | ID=MS.gene05750.t1.exon4;Parent=MS.gene05750.t1 |
| chr3.1 | CDS | 48980182 | 48980263 | 48980182 | ID=cds.MS.gene05750.t1;Parent=MS.gene05750.t1 |
| chr3.1 | exon | 48979643 | 48979805 | 48979643 | ID=MS.gene05750.t1.exon5;Parent=MS.gene05750.t1 |
| chr3.1 | CDS | 48979643 | 48979805 | 48979643 | ID=cds.MS.gene05750.t1;Parent=MS.gene05750.t1 |
| Gene Sequence |
| Protein sequence |
