AlfalfaGEDB | MS.gene057889

M. sativa cultivar XinJiangDaYe / MS.gene057889

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057889.t1	AES99850.1	95.7	234	9	1	1	233	1	234	6.30E-111	410.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057889.t1	Q9STS6	56.9	102	43	1	9	110	36	136	8.3e-27	122.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057889.t1	G7KHA7	95.7	234	9	1	1	233	1	234	4.6e-111	410.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene057889.t1	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057889.t1	MTR_5g085390	94.468	235	10	3	1	233	1	234	1.65e-138	388
MS.gene057889.t1	MTR_6g011200	56.967	244	84	6	1	233	1	234	6.08e-81	243
MS.gene057889.t1	MTR_6g011250	63.121	141	50	1	1	139	1	141	3.18e-59	185
MS.gene057889.t1	MTR_6g011230	47.257	237	81	11	1	228	1	202	6.72e-55	174
MS.gene057889.t1	MTR_4g099230	63.910	133	43	1	10	142	3	130	1.11e-54	172
MS.gene057889.t1	MTR_6g004550	55.556	126	50	2	37	159	1	123	1.90e-37	128
MS.gene057889.t1	MTR_4g107450	54.717	106	47	1	8	113	9	113	1.06e-31	117
MS.gene057889.t1	MTR_8g017090	53.333	105	48	1	7	111	10	113	1.20e-29	112
MS.gene057889.t1	MTR_3g073690	45.098	102	55	1	10	111	10	110	3.73e-28	106
MS.gene057889.t1	MTR_7g033800	34.545	165	80	4	7	159	9	157	2.34e-27	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057889.t1	AT3G47870	56.863	102	43	1	9	110	36	136	2.48e-36	130
MS.gene057889.t1	AT3G13850	48.246	114	58	1	8	121	35	147	7.96e-30	112
MS.gene057889.t1	AT1G65620	30.348	201	130	2	7	207	7	197	1.54e-27	104
MS.gene057889.t1	AT1G65620	30.348	201	130	2	7	207	7	197	1.54e-27	104
MS.gene057889.t1	AT1G65620	30.348	201	130	2	7	207	7	197	1.54e-27	104
MS.gene057889.t1	AT1G65620	30.348	201	130	2	7	207	7	197	1.54e-27	104
MS.gene057889.t1	AT1G65620	30.348	201	130	2	7	207	7	197	1.54e-27	104
MS.gene057889.t1	AT5G66870	44.118	102	56	1	10	111	8	108	1.20e-26	105
MS.gene057889.t1	AT3G27650	42.342	111	62	2	7	116	37	146	2.20e-26	100
MS.gene057889.t1	AT2G40470	34.247	146	84	5	1	145	15	149	1.90e-25	99.0

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Find 41 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGTCTATGGAAGAGT+TGG	0.512156	5.3:+69179789	MS.gene057889:CDS
AACACCAAGACATCCATGAA+CGG	0.603796	5.3:-69179743	None:intergenic
AAGGATACTAAAGGAAATCA+AGG	0.515917	5.3:+69179654	MS.gene057889:CDS
AATATCCGACTCAATAATTA+TGG	0.288561	5.3:-69179707	None:intergenic
ACACCAAGACATCCATGAAC+GGG	0.497015	5.3:-69179742	None:intergenic
AGATATGTTAAAGCAGTCTA+TGG	0.416875	5.3:+69179780	MS.gene057889:CDS
AGCAACGCTCATCGTTTGTT+TGG	0.383470	5.3:+69179616	MS.gene057889:CDS
AGCTAGAACAACATTTGATT+TGG	0.264146	5.3:+69180149	MS.gene057889:CDS
ATCCCAATATTTAACAATGT+TGG	0.449694	5.3:+69179907	MS.gene057889:CDS
CAACATACAAAGGATACTAA+AGG	0.551295	5.3:+69179645	MS.gene057889:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGATACTAAAGGAAATCA+AGG	+	chr5.3:69179654-69179673	MS.gene057889:CDS	30.0%
AGATATGTTAAAGCAGTCTA+TGG	+	chr5.3:69179780-69179799	MS.gene057889:CDS	30.0%
AGCTAGAACAACATTTGATT+TGG	+	chr5.3:69180149-69180168	MS.gene057889:CDS	30.0%
CAACATACAAAGGATACTAA+AGG	+	chr5.3:69179645-69179664	MS.gene057889:CDS	30.0%
CACTATAGTTAACATCATGA+GGG	-	chr5.3:69180020-69180039	None:intergenic	30.0%
CTTTAGTATCCTTTGTATGT+TGG	-	chr5.3:69179647-69179666	None:intergenic	30.0%
GAATATCATCAAACCAAACA+AGG	+	chr5.3:69179504-69179523	MS.gene057889:CDS	30.0%
GAGATCCATAATTATTGAGT+CGG	+	chr5.3:69179702-69179721	MS.gene057889:CDS	30.0%
GGAATTTGAGAACTAGTATA+AGG	-	chr5.3:69179883-69179902	None:intergenic	30.0%
GGATGACAATTCTAATTTGA+TGG	+	chr5.3:69180056-69180075	MS.gene057889:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	69179502	69180203	69179502	ID=MS.gene057889
chr5.3	mRNA	69179502	69180203	69179502	ID=MS.gene057889.t1;Parent=MS.gene057889
chr5.3	exon	69179502	69180203	69179502	ID=MS.gene057889.t1.exon1;Parent=MS.gene057889.t1
chr5.3	CDS	69179502	69180203	69179502	ID=cds.MS.gene057889.t1;Parent=MS.gene057889.t1

Gene Sequence

>MS.gene057889

ATGAATATCATCAAACCAAACAAGGCTTGTGCAGCATGCAAGTATCAAAGAAGAAAGTGTTCAAGTGAGTGTCCTTTAGCTCCTTATTTCCCGGCCGATAAACCAAAAATGTTTAGCAACGCTCATCGTTTGTTTGGTGTTTCCAACATACAAAGGATACTAAAGGAAATCAAGGACGACGATCAAAAAGATGATGCGATGAGATCCATAATTATTGAGTCGGATATTCGTGCAAAATCTCCCGTTCATGGATGTCTTGGTGTTATTATGAATTATGGAGATATGTTAAAGCAGTCTATGGAAGAGTTGGATCATGTAAAAACGTTACTAGCTTATTGTAACGATTTACAACAAAAACAACATCTTCATTCTTCCTTACCTTATACTAGTTCTCAAATTCCAAATATCCCAATATTTAACAATGTTGGTGATGTTCCTAATTATTATTATTATTATCCCAATAGTGAAAATAATAATATGATGAGAGCATCTTCTTCTTATATTAGTGACATCATCCCTCATGATGTTAACTATAGTGGTGGCGACTATGTCATGGATGACAATTCTAATTTGATGGTACCAAAAGGATTATCAAGCAATGAAGAATCAGACGACCTTGACGACCTTGATGGTGGTGTTGATGAACAAGCTAGAACAACATTTGATTTGGGGAAAAAAGGAAGATTTTCAGATAGTGATTAA

Protein sequence

>MS.gene057889.t1

MNIIKPNKACAACKYQRRKCSSECPLAPYFPADKPKMFSNAHRLFGVSNIQRILKEIKDDDQKDDAMRSIIIESDIRAKSPVHGCLGVIMNYGDMLKQSMEELDHVKTLLAYCNDLQQKQHLHSSLPYTSSQIPNIPIFNNVGDVPNYYYYYPNSENNNMMRASSSYISDIIPHDVNYSGGDYVMDDNSNLMVPKGLSSNEESDDLDDLDGGVDEQARTTFDLGKKGRFSDSD