AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057902

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057902.t1 MTR_4g086835 87.903 248 19 1 158 394 163 410 2.82e-146 421
MS.gene057902.t1 MTR_4g086835 87.500 248 19 2 158 394 163 409 8.54e-144 415
MS.gene057902.t1 MTR_5g017980 55.396 139 57 3 255 391 190 325 4.60e-40 145
MS.gene057902.t1 MTR_5g017980 54.676 139 57 4 255 391 189 323 1.06e-37 139
MS.gene057902.t1 MTR_5g017980 54.676 139 57 4 255 391 190 324 1.11e-37 139
MS.gene057902.t1 MTR_4g113140 71.910 89 20 2 254 338 231 318 4.10e-35 134
MS.gene057902.t1 MTR_3g090510 83.333 72 8 1 92 159 179 250 2.33e-31 123
MS.gene057902.t1 MTR_4g061200 81.944 72 9 1 92 159 175 246 7.59e-31 121
MS.gene057902.t1 MTR_4g061200 81.944 72 9 1 92 159 175 246 9.88e-31 121
MS.gene057902.t1 MTR_4g061200 81.944 72 9 1 92 159 175 246 1.95e-30 121
MS.gene057902.t1 MTR_4g061200 81.944 72 9 1 92 159 175 246 2.78e-30 121
MS.gene057902.t1 MTR_5g054300 60.227 88 31 1 257 340 197 284 1.49e-29 117
MS.gene057902.t1 MTR_1g093080 39.594 197 86 6 166 352 136 309 3.09e-29 117
MS.gene057902.t1 MTR_7g061190 69.444 72 18 1 92 159 25 96 6.92e-27 105
MS.gene057902.t1 MTR_4g094868 70.833 72 17 1 92 159 64 135 4.24e-26 108
MS.gene057902.t1 MTR_4g094868 70.833 72 17 1 92 159 220 291 2.33e-25 107
MS.gene057902.t1 MTR_4g094868 70.833 72 17 1 92 159 220 291 2.46e-25 107
MS.gene057902.t1 MTR_7g060560 75.000 72 13 2 92 159 172 242 2.76e-25 106
MS.gene057902.t1 MTR_5g016810 70.833 72 17 1 92 159 196 267 5.62e-25 106
MS.gene057902.t1 MTR_7g100590 69.444 72 18 1 92 159 183 254 9.42e-25 105
MS.gene057902.t1 MTR_5g016810 70.423 71 17 1 92 158 196 266 2.63e-24 104
MS.gene057902.t1 MTR_1g093080 41.958 143 66 2 166 308 136 261 4.29e-22 95.5
MS.gene057902.t1 MTR_2g093060 65.278 72 21 1 92 159 178 249 1.24e-21 96.7
MS.gene057902.t1 MTR_2g093060 65.278 72 21 1 92 159 178 249 1.44e-21 96.7
MS.gene057902.t1 MTR_2g093060 65.278 72 21 1 92 159 178 249 1.46e-21 96.7
MS.gene057902.t1 MTR_1g037030 60.000 70 23 2 114 179 118 186 6.06e-18 82.4
MS.gene057902.t1 MTR_7g089010 47.761 67 34 1 251 317 84 149 8.90e-14 71.6
MS.gene057902.t1 MTR_1g053830 46.269 67 36 0 256 322 16 82 8.91e-14 67.4
MS.gene057902.t1 MTR_4g098870 32.479 117 78 1 201 317 253 368 1.01e-13 73.2
MS.gene057902.t1 MTR_4g098870 32.479 117 78 1 201 317 273 388 1.15e-13 72.8
MS.gene057902.t1 MTR_4g098870 32.479 117 78 1 201 317 292 407 1.88e-13 72.4
MS.gene057902.t1 MTR_4g098870 32.479 117 78 1 201 317 253 368 2.05e-13 72.0
MS.gene057902.t1 MTR_4g098870 32.479 117 78 1 201 317 273 388 2.12e-13 72.0
MS.gene057902.t1 MTR_5g014040 41.379 87 50 1 231 317 284 369 2.20e-13 72.0
MS.gene057902.t1 MTR_5g041350 41.667 84 48 1 255 337 12 95 4.25e-13 70.5
MS.gene057902.t1 MTR_7g115530 61.111 54 21 0 258 311 218 271 5.95e-13 69.3
MS.gene057902.t1 MTR_1g080330 59.259 54 22 0 258 311 175 228 6.87e-13 68.9
MS.gene057902.t1 MTR_7g115530 61.111 54 21 0 258 311 218 271 9.44e-13 68.9
MS.gene057902.t1 MTR_7g115530 61.111 54 21 0 258 311 218 271 1.03e-12 69.3
MS.gene057902.t1 MTR_7g098250 52.308 65 31 0 258 322 262 326 1.12e-12 69.7
MS.gene057902.t1 MTR_1g080330 59.259 54 22 0 258 311 175 228 1.46e-12 68.9
MS.gene057902.t1 MTR_4g121020 40.678 118 56 4 255 372 212 315 1.93e-12 69.3
MS.gene057902.t1 MTR_4g121020 40.678 118 56 4 255 372 212 315 1.98e-12 69.3
MS.gene057902.t1 MTR_2g023580 51.613 62 30 0 250 311 47 108 2.03e-12 67.0
MS.gene057902.t1 MTR_7g115530 61.111 54 21 0 258 311 218 271 2.11e-12 68.6
MS.gene057902.t1 MTR_4g121020 40.678 118 56 4 255 372 108 211 2.62e-12 68.6
MS.gene057902.t1 MTR_2g450070 44.304 79 39 3 255 332 210 284 4.60e-12 68.2
MS.gene057902.t1 MTR_2g450070 44.304 79 39 3 255 332 210 284 4.85e-12 68.2
MS.gene057902.t1 MTR_1g013170 47.059 68 35 1 253 320 186 252 4.90e-12 67.8
MS.gene057902.t1 MTR_0223s0040 61.224 49 19 0 263 311 23 71 6.35e-12 66.2
MS.gene057902.t1 MTR_4g064730 45.312 64 34 1 254 317 127 189 8.44e-12 65.9
MS.gene057902.t1 MTR_6g005650 68.333 60 15 1 224 283 84 139 1.02e-11 65.5
MS.gene057902.t1 MTR_1g112370 59.184 49 20 0 263 311 27 75 1.12e-11 65.9
MS.gene057902.t1 MTR_8g066310 33.784 148 77 5 245 389 159 288 1.13e-11 65.9
MS.gene057902.t1 MTR_7g088070 46.575 73 38 1 250 322 42 113 1.59e-11 64.7
MS.gene057902.t1 MTR_7g055620 62.264 53 16 1 122 170 6 58 1.80e-11 65.5
MS.gene057902.t1 MTR_5g014040 39.130 92 50 2 231 317 284 374 1.93e-11 65.9
MS.gene057902.t1 MTR_5g014040 39.130 92 50 2 231 317 244 334 2.05e-11 65.9
MS.gene057902.t1 MTR_4g078810 42.857 84 43 2 254 333 154 236 2.51e-11 65.5
MS.gene057902.t1 MTR_2g034960 42.353 85 45 2 255 339 208 288 2.65e-11 65.5
MS.gene057902.t1 MTR_3g106220 41.667 72 41 1 257 328 197 267 2.69e-11 65.5
MS.gene057902.t1 MTR_7g115530 59.615 52 21 0 258 309 218 269 3.04e-11 63.9
MS.gene057902.t1 MTR_7g088070 50.794 63 31 0 250 312 42 104 3.27e-11 63.9
MS.gene057902.t1 MTR_3g064840 45.745 94 48 3 231 321 245 338 3.77e-11 64.7
MS.gene057902.t1 MTR_6g032990 50.000 58 29 0 255 312 39 96 4.23e-11 64.3
MS.gene057902.t1 MTR_2g027860 56.364 55 24 0 258 312 49 103 4.73e-11 63.9
MS.gene057902.t1 MTR_2g086450 50.000 58 29 0 255 312 42 99 5.19e-11 64.3
MS.gene057902.t1 MTR_1g032570 48.387 62 31 1 256 317 129 189 8.24e-11 63.9
MS.gene057902.t1 MTR_4g081710 42.667 75 42 1 255 328 14 88 8.99e-11 63.2
MS.gene057902.t1 MTR_7g069660 45.312 64 35 0 248 311 61 124 9.01e-11 63.2
MS.gene057902.t1 MTR_6g071625 38.532 109 58 3 243 343 182 289 9.59e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057902.t1 AT1G49560 48.193 166 74 4 230 387 164 325 3.88e-36 135
MS.gene057902.t1 AT2G03500 44.693 179 80 4 180 349 159 327 5.81e-35 134
MS.gene057902.t1 AT1G68670 65.591 93 24 1 255 339 212 304 1.63e-33 128
MS.gene057902.t1 AT1G13300 67.416 89 24 2 257 340 180 268 2.39e-32 125
MS.gene057902.t1 AT1G25550 51.261 119 51 1 255 366 206 324 3.45e-32 124
MS.gene057902.t1 AT4G37180 38.916 203 91 5 161 358 132 306 1.94e-29 117
MS.gene057902.t1 AT4G37180 38.916 203 91 5 161 358 139 313 1.99e-29 117
MS.gene057902.t1 AT3G25790 49.580 119 45 3 262 372 200 311 6.58e-29 115
MS.gene057902.t1 AT4G36920 73.611 72 15 1 92 159 175 246 5.50e-27 112
MS.gene057902.t1 AT4G36920 73.611 72 15 1 92 159 175 246 5.50e-27 112
MS.gene057902.t1 AT2G28550 69.444 72 18 1 92 159 197 268 3.48e-25 103
MS.gene057902.t1 AT2G28550 69.444 72 18 1 92 159 197 268 3.48e-25 103
MS.gene057902.t1 AT2G28550 69.444 72 18 1 92 159 31 102 8.32e-25 103
MS.gene057902.t1 AT2G28550 69.444 72 18 1 92 159 197 268 1.40e-24 103
MS.gene057902.t1 AT2G28550 69.444 72 18 1 92 159 197 268 3.57e-24 103
MS.gene057902.t1 AT1G25550 81.481 54 10 0 255 308 206 259 3.72e-24 101
MS.gene057902.t1 AT2G28550 69.444 72 18 1 92 159 197 268 4.08e-24 103
MS.gene057902.t1 AT1G49560 60.759 79 31 0 230 308 164 242 3.53e-23 98.2
MS.gene057902.t1 AT5G67180 65.278 72 21 1 92 159 140 211 6.07e-23 97.4
MS.gene057902.t1 AT4G37180 39.865 148 70 3 161 308 132 260 6.16e-23 97.8
MS.gene057902.t1 AT5G67180 65.278 72 21 1 92 159 140 211 7.70e-23 97.8
MS.gene057902.t1 AT5G67180 65.278 72 21 1 92 159 140 211 8.35e-23 99.0
MS.gene057902.t1 AT5G67180 65.278 72 21 1 92 159 140 211 8.71e-23 97.4
MS.gene057902.t1 AT3G25790 76.596 47 11 0 262 308 200 246 8.17e-19 85.9
MS.gene057902.t1 AT2G40970 47.761 67 34 1 251 317 98 163 8.29e-14 71.2
MS.gene057902.t1 AT5G05090 47.761 67 34 1 251 317 74 139 8.79e-14 71.2
MS.gene057902.t1 AT3G10760 47.761 67 34 1 251 317 98 163 1.05e-13 72.0
MS.gene057902.t1 AT5G59570 46.875 64 33 1 254 317 137 199 3.47e-13 70.1
MS.gene057902.t1 AT5G59570 46.875 64 33 1 254 317 137 199 3.47e-13 70.1
MS.gene057902.t1 AT3G04450 61.111 54 21 0 258 311 238 291 5.40e-13 69.7
MS.gene057902.t1 AT3G04450 49.296 71 36 0 258 328 238 308 9.44e-13 69.7
MS.gene057902.t1 AT3G04450 49.296 71 36 0 258 328 198 268 1.00e-12 69.7
MS.gene057902.t1 AT3G04450 49.296 71 36 0 258 328 198 268 1.00e-12 69.7
MS.gene057902.t1 AT2G06020 32.749 171 95 6 158 327 2 153 1.09e-12 68.6
MS.gene057902.t1 AT5G29000 57.143 56 24 0 256 311 229 284 2.20e-12 67.8
MS.gene057902.t1 AT5G58080 42.857 84 38 2 255 329 191 273 2.34e-12 68.9
MS.gene057902.t1 AT3G16857 39.496 119 55 3 257 372 236 340 4.22e-12 68.2
MS.gene057902.t1 AT3G16857 39.496 119 55 3 257 372 166 270 4.58e-12 68.2
MS.gene057902.t1 AT3G16857 39.496 119 55 3 257 372 236 340 4.96e-12 68.2
MS.gene057902.t1 AT3G13040 54.386 57 26 0 256 312 239 295 6.29e-12 67.4
MS.gene057902.t1 AT3G13040 54.386 57 26 0 256 312 239 295 6.29e-12 67.4
MS.gene057902.t1 AT3G13040 54.386 57 26 0 256 312 239 295 6.29e-12 67.4
MS.gene057902.t1 AT2G01760 50.794 63 30 1 255 317 225 286 6.56e-12 67.0
MS.gene057902.t1 AT5G29000 59.259 54 22 0 258 311 231 284 6.74e-12 67.0
MS.gene057902.t1 AT5G29000 59.259 54 22 0 258 311 188 241 7.49e-12 66.6
MS.gene057902.t1 AT5G29000 59.259 54 22 0 258 311 188 241 7.49e-12 66.6
MS.gene057902.t1 AT4G28610 50.746 67 32 1 258 323 225 291 7.55e-12 67.0
MS.gene057902.t1 AT2G01760 50.794 63 30 1 255 317 132 193 7.92e-12 66.2
MS.gene057902.t1 AT2G01760 50.794 63 30 1 255 317 197 258 8.18e-12 66.6
MS.gene057902.t1 AT3G46640 37.363 91 54 2 254 342 140 229 9.05e-12 66.2
MS.gene057902.t1 AT3G46640 37.363 91 54 2 254 342 140 229 9.05e-12 66.2
MS.gene057902.t1 AT3G46640 37.363 91 54 2 254 342 140 229 9.81e-12 65.9
MS.gene057902.t1 AT2G38300 46.774 62 33 0 250 311 46 107 1.23e-11 65.9
MS.gene057902.t1 AT1G32240 43.820 89 49 1 245 332 199 287 2.12e-11 65.5
MS.gene057902.t1 AT2G20400 48.571 70 35 1 258 326 231 300 2.34e-11 65.5
MS.gene057902.t1 AT2G20400 51.562 64 30 1 258 321 231 293 2.77e-11 65.1
MS.gene057902.t1 AT1G32240 43.820 89 49 1 245 332 199 287 2.99e-11 65.1
MS.gene057902.t1 AT2G01060 51.562 64 30 1 258 321 15 77 3.10e-11 64.3
MS.gene057902.t1 AT5G18240 51.724 58 28 0 255 312 42 99 3.89e-11 64.7
MS.gene057902.t1 AT5G18240 51.724 58 28 0 255 312 42 99 3.89e-11 64.7
MS.gene057902.t1 AT3G04030 50.000 58 29 0 255 312 42 99 3.99e-11 64.7
MS.gene057902.t1 AT5G18240 51.724 58 28 0 255 312 42 99 4.27e-11 64.7
MS.gene057902.t1 AT5G18240 51.724 58 28 0 255 312 42 99 4.38e-11 64.7
MS.gene057902.t1 AT5G18240 51.724 58 28 0 255 312 42 99 4.38e-11 64.7
MS.gene057902.t1 AT5G60120 47.143 70 33 1 92 157 204 273 4.46e-11 64.7
MS.gene057902.t1 AT3G04030 50.000 58 29 0 255 312 42 99 4.46e-11 64.3
MS.gene057902.t1 AT5G60120 47.143 70 33 1 92 157 204 273 4.47e-11 64.7
MS.gene057902.t1 AT5G60120 47.143 70 33 1 92 157 204 273 5.80e-11 64.3
MS.gene057902.t1 AT2G02060 48.387 62 32 0 250 311 21 82 5.99e-11 62.8
MS.gene057902.t1 AT2G02060 48.387 62 32 0 250 311 21 82 5.99e-11 62.8
MS.gene057902.t1 AT1G14600 47.692 65 34 0 247 311 12 76 8.85e-11 62.4

Find 100 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTATTTCTTGGAGGTTTA+TGG 0.150361 3.3:+15560809 MS.gene057902:CDS
GGTTCTTCCTTCTCTTCTTT+AGG 0.234160 3.3:-15559514 None:intergenic
GATCAGTCTGTTGTATTTCT+TGG 0.239407 3.3:+15560799 MS.gene057902:CDS
AAAGAATGCCTATTCCTTAC+AGG 0.261765 3.3:-15559535 None:intergenic
TTCAGCCGCAGCAGACTTCT+AGG 0.300158 3.3:+15559685 MS.gene057902:CDS
ATCAGTTCTCTAATTTGCTT+TGG 0.308173 3.3:-15560375 None:intergenic
TTCAATCTTGTAGTAGCAAT+AGG 0.367569 3.3:+15559419 MS.gene057902:CDS
TGGTTACAGAATCTTTGTTT+TGG 0.370943 3.3:+15557836 MS.gene057902:CDS
GATTGAGAAGCAGTTCTAAC+AGG 0.380368 3.3:+15559605 MS.gene057902:CDS
TTTGATGGTGTTGAAATTCA+TGG 0.380570 3.3:+15557807 MS.gene057902:CDS
ACAAATCTTCGGTGCAATTC+CGG 0.386895 3.3:-15559729 None:intergenic
AAGAGTCTGAGGGAAGGATT+TGG 0.407195 3.3:+15559574 MS.gene057902:CDS
TTGAGCTGCGATTCAATTCA+TGG 0.416426 3.3:+15558782 MS.gene057902:intron
AGGAAGAACCTGTAAGGAAT+AGG 0.417532 3.3:+15559527 MS.gene057902:CDS
TTTCTTCTTCCTCTAATCTT+CGG 0.424001 3.3:+15557426 MS.gene057902:CDS
CAGTCTGTTGTATTTCTTGG+AGG 0.429416 3.3:+15560802 MS.gene057902:CDS
AAGGGTAGCAGTACGGCTTC+TGG 0.429606 3.3:+15560862 MS.gene057902:CDS
TTCATTTAGCTACAGGATCC+CGG 0.434371 3.3:+15560902 MS.gene057902:CDS
TTGCTACTACAAGATTGAAA+AGG 0.437021 3.3:-15559415 None:intergenic
TTATGATGATGATCTTAAAC+AGG 0.440099 3.3:+15558839 MS.gene057902:CDS
AACAGAAGAATACGCTGAAA+AGG 0.441077 3.3:-15559464 None:intergenic
GGCGAGGACGACGGCAGAAA+CGG 0.443473 3.3:-15557370 None:intergenic
AGAGAACTGATACAAGTTGA+TGG 0.447103 3.3:+15560387 MS.gene057902:CDS
TCTTCACTTCATCATTAGTC+AGG 0.447623 3.3:-15560410 None:intergenic
ACTAACCTACCGAAGATTAG+AGG 0.448596 3.3:-15557435 None:intergenic
CGGCAGAAACGGCGTGGTCG+CGG 0.451057 3.3:-15557359 None:intergenic
GTTAATGCGTTGCAGAAGCT+TGG 0.458197 3.3:+15559750 MS.gene057902:CDS
TCCCTCAGACTCTTCACCTC+AGG 0.461715 3.3:-15559565 None:intergenic
AGTCCACTTCATTTAGCTAC+AGG 0.467143 3.3:+15560895 MS.gene057902:CDS
CACTGCACAAATGTGGCCGT+TGG 0.489717 3.3:+15559022 MS.gene057902:CDS
GCAACGCATTAACAAATCTT+CGG 0.490115 3.3:-15559740 None:intergenic
TGAGGGAAGGATTTGGTTCG+AGG 0.493121 3.3:+15559581 MS.gene057902:CDS
ACTGCACAAATGTGGCCGTT+GGG 0.494469 3.3:+15559023 MS.gene057902:CDS
GCGATTCAATTCATGGGAGT+TGG 0.499887 3.3:+15558789 MS.gene057902:CDS
GAAGTCTGCTGCGGCTGAAG+TGG 0.500174 3.3:-15559681 None:intergenic
TGCTACTACAAGATTGAAAA+GGG 0.504468 3.3:-15559414 None:intergenic
AAGAGAAGGAAGAACCTGTA+AGG 0.506152 3.3:+15559521 MS.gene057902:CDS
CAGTTGGCAATGACCCTCCC+CGG 0.513325 3.3:-15560921 None:intergenic
GGCAGAAACGGCGTGGTCGC+GGG 0.515074 3.3:-15557358 None:intergenic
TCATTTAGCTACAGGATCCC+GGG 0.515125 3.3:+15560903 MS.gene057902:CDS
ATCAGCACCTAAAGAAGAGA+AGG 0.517481 3.3:+15559507 MS.gene057902:CDS
TGGCCGTTGGGAAGCTCGAA+TGG 0.517802 3.3:+15559035 MS.gene057902:CDS
CAGAAGCTTGGAGGTTCTCA+AGG 0.522479 3.3:+15559762 MS.gene057902:CDS
ACAGAAGAATACGCTGAAAA+GGG 0.523683 3.3:-15559463 None:intergenic
GCTCGAATGGGTGAATTCCT+TGG 0.524242 3.3:+15559048 MS.gene057902:CDS
CTCTTCCAAGGGTAGCAGTA+CGG 0.527249 3.3:+15560855 MS.gene057902:CDS
GAGTCATTGTATTGTTCTTG+AGG 0.529959 3.3:-15560835 None:intergenic
AGTGTGTTCGATGGCGGAGA+CGG 0.536209 3.3:-15557391 None:intergenic
AGAAGCCGTACTGCTACCCT+TGG 0.538042 3.3:-15560860 None:intergenic
TGATCGGAAAAGTGATCGGC+GGG 0.539323 3.3:+15557265 MS.gene057902:CDS
CTCCTGAGGTGAAGAGTCTG+AGG 0.547301 3.3:+15559563 MS.gene057902:CDS
GGGATTGGATTGAAGATGAT+CGG 0.551638 3.3:+15557249 None:intergenic
AATGCGTTGCAGAAGCTTGG+AGG 0.554542 3.3:+15559753 MS.gene057902:CDS
TCCATGCTATCACCTTCAGT+TGG 0.560829 3.3:-15560937 None:intergenic
ACACAACTCATGCTGCTGCT+AGG 0.562455 3.3:+15558671 MS.gene057902:CDS
CTAGGAAACAGAGGAGATGT+TGG 0.562978 3.3:+15559703 MS.gene057902:CDS
TAGCTACAGGATCCCGGGGA+GGG 0.570786 3.3:+15560908 MS.gene057902:CDS
GGCGGAGACGGCGAGGACGA+CGG 0.572022 3.3:-15557379 None:intergenic
ACAATACAATGACTCTTCCA+AGG 0.575169 3.3:+15560843 MS.gene057902:CDS
TGAGCTGCGATTCAATTCAT+GGG 0.576505 3.3:+15558783 MS.gene057902:intron
GATAATGTCACAGTTGTCAC+AGG 0.582170 3.3:-15559487 None:intergenic
GATCGGCGGGAGGGTTAGAG+AGG 0.584550 3.3:+15557278 MS.gene057902:CDS
GTTGAAATTCATGGAGCTCA+TGG 0.586021 3.3:+15557816 MS.gene057902:CDS
TGTAGTAGCAATAGGAATGG+TGG 0.590861 3.3:+15559427 MS.gene057902:CDS
GAAACGGCGTGGTCGCGGGT+AGG 0.591690 3.3:-15557354 None:intergenic
GCCAACTGAAGGTGATAGCA+TGG 0.591941 3.3:+15560936 MS.gene057902:CDS
AGTTGGCAATGACCCTCCCC+GGG 0.593531 3.3:-15560920 None:intergenic
GGCCGTTGGGAAGCTCGAAT+GGG 0.594472 3.3:+15559036 MS.gene057902:CDS
ACAGAGGAGATGTTGGTCAC+CGG 0.596435 3.3:+15559710 MS.gene057902:CDS
CGGAAAAGTGATCGGCGGGA+GGG 0.597609 3.3:+15557269 MS.gene057902:CDS
GGAGGGTCATTGCCAACTGA+AGG 0.603075 3.3:+15560925 MS.gene057902:CDS
AGATTAGAGGAAGAAGAAAA+CGG 0.604271 3.3:-15557422 None:intergenic
TGATCAGTACCACTTGCAGT+TGG 0.605218 3.3:-15560781 None:intergenic
CGGAGAGTTCCAACTGCAAG+TGG 0.605354 3.3:+15560772 MS.gene057902:CDS
CACCCATTCGAGCTTCCCAA+CGG 0.606773 3.3:-15559038 None:intergenic
GATCCTGTAGCTAAATGAAG+TGG 0.608872 3.3:-15560898 None:intergenic
AAGATGATCGGAAAAGTGAT+CGG 0.615466 3.3:+15557261 None:intergenic
GTGGAGATCAGTGTGTTCGA+TGG 0.615722 3.3:-15557400 None:intergenic
TTAGAGGAAGAAGAAAACGG+TGG 0.616708 3.3:-15557419 None:intergenic
TCTTGTAGTAGCAATAGGAA+TGG 0.623566 3.3:+15559424 MS.gene057902:CDS
TTGAAAACACTGCACAAATG+TGG 0.623939 3.3:+15559015 MS.gene057902:CDS
ATTGAGAAGCAGTTCTAACA+GGG 0.626581 3.3:+15559606 MS.gene057902:CDS
TCCTGAGGTGAAGAGTCTGA+GGG 0.627063 3.3:+15559564 MS.gene057902:CDS
GAGGGAAGGATTTGGTTCGA+GGG 0.630808 3.3:+15559582 MS.gene057902:CDS
GAGATCAGTGTGTTCGATGG+CGG 0.631280 3.3:-15557397 None:intergenic
GAGGTGAAGAGTCTGAGGGA+AGG 0.631423 3.3:+15559568 MS.gene057902:CDS
TCGGAAAAGTGATCGGCGGG+AGG 0.634971 3.3:+15557268 MS.gene057902:CDS
CAATACAATGACTCTTCCAA+GGG 0.642827 3.3:+15560844 MS.gene057902:CDS
ATCGGCGGGAGGGTTAGAGA+GGG 0.647656 3.3:+15557279 MS.gene057902:CDS
ACGCTGAAAAGGGAGGAAGA+AGG 0.647782 3.3:+15559367 MS.gene057902:intron
AGCAGACTTCTAGGAAACAG+AGG 0.657415 3.3:+15559694 MS.gene057902:CDS
AGGGAAGGATTTGGTTCGAG+GGG 0.657557 3.3:+15559583 MS.gene057902:CDS
AGAAATACAGATTTCATACA+CGG 0.657784 3.3:+15560752 MS.gene057902:intron
CATTTAGCTACAGGATCCCG+GGG 0.660202 3.3:+15560904 MS.gene057902:CDS
GTTCGATGGCGGAGACGGCG+AGG 0.661359 3.3:-15557386 None:intergenic
GCTAAATGAAGTGGACTCTG+TGG 0.662141 3.3:-15560889 None:intergenic
ATGATCGGAAAAGTGATCGG+CGG 0.669379 3.3:+15557264 MS.gene057902:CDS
TTAGCTACAGGATCCCGGGG+AGG 0.681645 3.3:+15560907 MS.gene057902:CDS
GGACGACGGCAGAAACGGCG+TGG 0.688205 3.3:-15557365 None:intergenic
TGTTTCCTAGAAGTCTGCTG+CGG 0.688682 3.3:-15559690 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAGAAAATAAATC+AGG - chr3.3:15558384-15558403 None:intergenic 10.0%
!!! AAAATGGTTTATTTTTTAAT+TGG + chr3.3:15557653-15557672 MS.gene057902:intron 10.0%
!!! AAATGGTTTATTTTTTAATT+GGG + chr3.3:15557654-15557673 MS.gene057902:intron 10.0%
!!! ATTATATGATTTACTATTTT+AGG + chr3.3:15558589-15558608 MS.gene057902:intron 10.0%
!!! TTTATTTTCTTATTTTTTGA+AGG + chr3.3:15558386-15558405 MS.gene057902:intron 10.0%
!! AATCTATAATATTTCCAAAT+TGG - chr3.3:15559912-15559931 None:intergenic 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG - chr3.3:15559087-15559106 None:intergenic 15.0%
!!! ATCATTTAAAATCAATATAG+AGG - chr3.3:15558501-15558520 None:intergenic 15.0%
!! AAAAATTAAAAATGGAGTGT+TGG + chr3.3:15557733-15557752 MS.gene057902:intron 20.0%
!! AAAATAAATCAGGAAAATGA+AGG - chr3.3:15558374-15558393 None:intergenic 20.0%
!! GGGTTGTTAAAAATTAAAAA+TGG + chr3.3:15557725-15557744 MS.gene057902:intron 20.0%
!! GTAATAACATTACATTTGTT+TGG + chr3.3:15560312-15560331 MS.gene057902:intron 20.0%
!! TAAATTCATAATATCTCATG+TGG - chr3.3:15559122-15559141 None:intergenic 20.0%
!! TATGATCATCTACAATAATT+TGG - chr3.3:15558235-15558254 None:intergenic 20.0%
!! TTGGAAATATTATAGATTAG+TGG + chr3.3:15559914-15559933 MS.gene057902:intron 20.0%
!!! AATTTGTGTTTGATTTTTGT+AGG + chr3.3:15558640-15558659 MS.gene057902:intron 20.0%
!!! ATTATGAATTTAAAACCCTA+AGG + chr3.3:15559130-15559149 MS.gene057902:intron 20.0%
!!! ATTTTCTTATTTTTTGAAGG+TGG + chr3.3:15558389-15558408 MS.gene057902:intron 20.0%
!!! TACAATCAATTTTTTATGCT+TGG + chr3.3:15558293-15558312 MS.gene057902:intron 20.0%
!!! TTTGTTTTGGTTATTAATGA+GGG + chr3.3:15559325-15559344 MS.gene057902:intron 20.0%
!!! TTTTGAACTTTTTGAGTTTT+TGG + chr3.3:15557697-15557716 MS.gene057902:intron 20.0%
!!! TTTTGTTTTGGTTATTAATG+AGG + chr3.3:15559324-15559343 MS.gene057902:intron 20.0%
! AAAAATCTGAGAATTATAGC+TGG + chr3.3:15560974-15560993 MS.gene057902:CDS 25.0%
! AGAAATACAGATTTCATACA+CGG + chr3.3:15560752-15560771 MS.gene057902:intron 25.0%
! ATGAAAAACACCATAAAAAG+AGG - chr3.3:15558271-15558290 None:intergenic 25.0%
! ATGTTAAAAACTGTGTGAAA+AGG + chr3.3:15557616-15557635 MS.gene057902:intron 25.0%
! ATTGTAGATGATCATATCAT+AGG + chr3.3:15558239-15558258 MS.gene057902:intron 25.0%
! CAACAACAAACAAACAAAAA+AGG - chr3.3:15558460-15558479 None:intergenic 25.0%
! CTTTATTAAGCTTAGTTACT+AGG + chr3.3:15560489-15560508 MS.gene057902:intron 25.0%
! TCCAAAAACTTACTTGTAAA+TGG - chr3.3:15560437-15560456 None:intergenic 25.0%
! TGTTAAAAACTGTGTGAAAA+GGG + chr3.3:15557617-15557636 MS.gene057902:intron 25.0%
! TTGTGTTATAAAGTTTGAAC+TGG + chr3.3:15560697-15560716 MS.gene057902:intron 25.0%
! TTTCTTTAGACAATTTGGAA+TGG + chr3.3:15558205-15558224 MS.gene057902:intron 25.0%
!! AATCCTTAAACTTTTAACAC+TGG - chr3.3:15559966-15559985 None:intergenic 25.0%
!! CAATTTTGCATACATAGTTT+TGG + chr3.3:15560283-15560302 MS.gene057902:intron 25.0%
!! TTATGATGATGATCTTAAAC+AGG + chr3.3:15558839-15558858 MS.gene057902:CDS 25.0%
!!! CTTTCGTATTTGTTTTGTTT+TGG + chr3.3:15559312-15559331 MS.gene057902:intron 25.0%
!!! GTTTCTTTGTTTTTAATCGA+TGG + chr3.3:15558557-15558576 MS.gene057902:intron 25.0%
!!! TGATAGGCTTATATGTTTTT+TGG - chr3.3:15560242-15560261 None:intergenic 25.0%
!!! TTTTTGAGTTTTTGGAATCT+GGG + chr3.3:15557705-15557724 MS.gene057902:intron 25.0%
AATTGAGAAAGAATTGGCAA+AGG + chr3.3:15559259-15559278 MS.gene057902:intron 30.0%
AATTGCTAAGGCAAATCATT+TGG - chr3.3:15560268-15560287 None:intergenic 30.0%
ACATGCATGTCATTGAATAA+AGG - chr3.3:15557468-15557487 None:intergenic 30.0%
AGATTAGAGGAAGAAGAAAA+CGG - chr3.3:15557425-15557444 None:intergenic 30.0%
ATGCCAGTGTTAAAAGTTTA+AGG + chr3.3:15559960-15559979 MS.gene057902:intron 30.0%
ATGTCATTGAATAAAGGAAG+AGG - chr3.3:15557462-15557481 None:intergenic 30.0%
ATTCAATGACATGCATGTTA+TGG + chr3.3:15557470-15557489 MS.gene057902:intron 30.0%
CTATAGACAAGTCAATTTGT+AGG + chr3.3:15560105-15560124 MS.gene057902:intron 30.0%
CTATGTATGCAAAATTGCTA+AGG - chr3.3:15560280-15560299 None:intergenic 30.0%
GGGAAAATGATACTACAAAA+TGG + chr3.3:15557637-15557656 MS.gene057902:intron 30.0%
TATATCCCGAATTCAAATGT+TGG + chr3.3:15560128-15560147 MS.gene057902:intron 30.0%
TCACAAAAAAGAAACATGCA+TGG - chr3.3:15558526-15558545 None:intergenic 30.0%
TCTGAGAATTGAGAAAGAAT+TGG + chr3.3:15559253-15559272 MS.gene057902:intron 30.0%
TGCGTAAATTTAGATAAGCA+AGG + chr3.3:15560063-15560082 MS.gene057902:intron 30.0%
TGCTACTACAAGATTGAAAA+GGG - chr3.3:15559417-15559436 None:intergenic 30.0%
TGTGTTCAATTGAATGAGTT+GGG + chr3.3:15557924-15557943 MS.gene057902:intron 30.0%
TTCAATCTTGTAGTAGCAAT+AGG + chr3.3:15559419-15559438 MS.gene057902:CDS 30.0%
TTGATGAATGTGAAACTAGA+TGG + chr3.3:15558883-15558902 MS.gene057902:intron 30.0%
TTGCTACTACAAGATTGAAA+AGG - chr3.3:15559418-15559437 None:intergenic 30.0%
TTGTATTTCTTGGAGGTTTA+TGG + chr3.3:15560809-15560828 MS.gene057902:CDS 30.0%
TTGTGTTCAATTGAATGAGT+TGG + chr3.3:15557923-15557942 MS.gene057902:intron 30.0%
TTTCTTCTTCCTCTAATCTT+CGG + chr3.3:15557426-15557445 MS.gene057902:CDS 30.0%
TTTGAAGGTGGTGAAATTAT+TGG + chr3.3:15558401-15558420 MS.gene057902:intron 30.0%
! AGGCTCTGATATTCAAAATT+TGG - chr3.3:15558758-15558777 None:intergenic 30.0%
! ATAATTCTCGACACACTTTT+AGG + chr3.3:15559181-15559200 MS.gene057902:intron 30.0%
! ATTATAGATTAGTGGATCGA+TGG + chr3.3:15559922-15559941 MS.gene057902:intron 30.0%
! GCCATTTACAAGTAAGTTTT+TGG + chr3.3:15560433-15560452 MS.gene057902:intron 30.0%
! GCTACTTTCTTTAGACAATT+TGG + chr3.3:15558200-15558219 MS.gene057902:intron 30.0%
! GTTCTAGACTTATGAATTAG+TGG + chr3.3:15558081-15558100 MS.gene057902:intron 30.0%
! TAGGTTTGTACCTCTTTTTA+TGG + chr3.3:15558258-15558277 MS.gene057902:intron 30.0%
!! AATTAAAAATGGAGTGTTGG+TGG + chr3.3:15557736-15557755 MS.gene057902:intron 30.0%
!! ACACTCAATTTTGACCAATT+TGG + chr3.3:15559895-15559914 MS.gene057902:intron 30.0%
!! ATCAGTTCTCTAATTTGCTT+TGG - chr3.3:15560378-15560397 None:intergenic 30.0%
!! ATGAGGGTTTTGTATTTGTT+TGG + chr3.3:15559341-15559360 MS.gene057902:intron 30.0%
!! TGAAACTGATTCACTTTTGT+TGG - chr3.3:15559159-15559178 None:intergenic 30.0%
!! TGGTTACAGAATCTTTGTTT+TGG + chr3.3:15557836-15557855 MS.gene057902:CDS 30.0%
!! TTGTGTTTGATTTTTGTAGG+TGG + chr3.3:15558643-15558662 MS.gene057902:intron 30.0%
!! TTTGATGGTGTTGAAATTCA+TGG + chr3.3:15557807-15557826 MS.gene057902:CDS 30.0%
!!! CTTTTTGAGTTTTTGGAATC+TGG + chr3.3:15557704-15557723 MS.gene057902:intron 30.0%
!!! TTTGTTTTTAATCGATGGTG+AGG + chr3.3:15558562-15558581 MS.gene057902:intron 30.0%
AAAGAATGCCTATTCCTTAC+AGG - chr3.3:15559538-15559557 None:intergenic 35.0%
AACAGAAGAATACGCTGAAA+AGG - chr3.3:15559467-15559486 None:intergenic 35.0%
AATCTGATCAAGGATTGTTC+CGG - chr3.3:15560154-15560173 None:intergenic 35.0%
ACAATACAATGACTCTTCCA+AGG + chr3.3:15560843-15560862 MS.gene057902:CDS 35.0%
ACAGAAGAATACGCTGAAAA+GGG - chr3.3:15559466-15559485 None:intergenic 35.0%
ACCTACAAGATGAGATTTGA+AGG + chr3.3:15558137-15558156 MS.gene057902:intron 35.0%
AGATAAGCAAGGAGACAAAT+AGG + chr3.3:15560074-15560093 MS.gene057902:intron 35.0%
AGTTACTAGGTGTTTGATGA+TGG + chr3.3:15560502-15560521 MS.gene057902:intron 35.0%
ATGCAAGTATTACATCCTTC+CGG - chr3.3:15557961-15557980 None:intergenic 35.0%
CAATACAATGACTCTTCCAA+GGG + chr3.3:15560844-15560863 MS.gene057902:CDS 35.0%
GAGTCATTGTATTGTTCTTG+AGG - chr3.3:15560838-15560857 None:intergenic 35.0%
GATCAGTCTGTTGTATTTCT+TGG + chr3.3:15560799-15560818 MS.gene057902:CDS 35.0%
GCAAATCATTTGGACTTGAT+AGG - chr3.3:15560258-15560277 None:intergenic 35.0%
GCAACGCATTAACAAATCTT+CGG - chr3.3:15559743-15559762 None:intergenic 35.0%
GGAGGTTATTAATCTGATCA+AGG - chr3.3:15560164-15560183 None:intergenic 35.0%
GGTGATCGATTACATGTTAA+TGG + chr3.3:15557549-15557568 MS.gene057902:intron 35.0%
TAATAAAGCACGCAGTTAAG+AGG - chr3.3:15560477-15560496 None:intergenic 35.0%
TATAAGCGAGGTATACTAGA+TGG + chr3.3:15560595-15560614 MS.gene057902:intron 35.0%
TCCTTCAAATCTCATCTTGT+AGG - chr3.3:15558141-15558160 None:intergenic 35.0%
TCTTATATAGTTGTGCTGTG+AGG + chr3.3:15559865-15559884 MS.gene057902:intron 35.0%
TCTTCACTTCATCATTAGTC+AGG - chr3.3:15560413-15560432 None:intergenic 35.0%
TCTTGTAGTAGCAATAGGAA+TGG + chr3.3:15559424-15559443 MS.gene057902:CDS 35.0%
TGCTAATCCATAGTTTGGTT+GGG - chr3.3:15560185-15560204 None:intergenic 35.0%
TTAGTTCACCAGTGAAGTTA+GGG + chr3.3:15560038-15560057 MS.gene057902:intron 35.0%
TTGAAAACACTGCACAAATG+TGG + chr3.3:15559015-15559034 MS.gene057902:CDS 35.0%
! AAAGCAAAGTTTTCCCAAGA+GGG + chr3.3:15558989-15559008 MS.gene057902:CDS 35.0%
! AGAGAACTGATACAAGTTGA+TGG + chr3.3:15560387-15560406 MS.gene057902:CDS 35.0%
! AGGCATTTAGGATTGAGATT+TGG + chr3.3:15560674-15560693 MS.gene057902:intron 35.0%
! ATTGAGAAGCAGTTCTAACA+GGG + chr3.3:15559606-15559625 MS.gene057902:CDS 35.0%
! TCTCTCTCTCTCTATGATTT+TGG + chr3.3:15557528-15557547 MS.gene057902:intron 35.0%
! TGTGTTCTCAGGATTTCTTT+TGG + chr3.3:15558431-15558450 MS.gene057902:intron 35.0%
! TTTAGTTCACCAGTGAAGTT+AGG + chr3.3:15560037-15560056 MS.gene057902:intron 35.0%
!! AACTGATTCACTTTTGTTGG+AGG - chr3.3:15559156-15559175 None:intergenic 35.0%
!! ATGCAAATTGCAGGTTTTGA+TGG + chr3.3:15557792-15557811 MS.gene057902:intron 35.0%
!!! AAGAATTGGCAAAGGTGTTT+TGG + chr3.3:15559267-15559286 MS.gene057902:intron 35.0%
!!! TAGGTTCTCACTTTTTACCA+AGG - chr3.3:15559068-15559087 None:intergenic 35.0%
AAGAGAAGGAAGAACCTGTA+AGG + chr3.3:15559521-15559540 MS.gene057902:CDS 40.0%
ACTAACCTACCGAAGATTAG+AGG - chr3.3:15557438-15557457 None:intergenic 40.0%
AGGAAGAACCTGTAAGGAAT+AGG + chr3.3:15559527-15559546 MS.gene057902:CDS 40.0%
AGGTGGTGAAATTATTGGAG+TGG + chr3.3:15558406-15558425 MS.gene057902:intron 40.0%
AGTCCACTTCATTTAGCTAC+AGG + chr3.3:15560895-15560914 MS.gene057902:CDS 40.0%
ATAACCTCCCAACCAAACTA+TGG + chr3.3:15560175-15560194 MS.gene057902:intron 40.0%
ATCAGCACCTAAAGAAGAGA+AGG + chr3.3:15559507-15559526 MS.gene057902:CDS 40.0%
ATCTCATCTTGTGGTGTATG+AGG - chr3.3:15558166-15558185 None:intergenic 40.0%
ATTCACAGTGTCTGGTTATG+AGG + chr3.3:15560654-15560673 MS.gene057902:intron 40.0%
CAGTCTGTTGTATTTCTTGG+AGG + chr3.3:15560802-15560821 MS.gene057902:CDS 40.0%
CTCAATCGCAAATATAAGCG+AGG + chr3.3:15560583-15560602 MS.gene057902:intron 40.0%
CTCAATGTGATGCAAATTGC+AGG + chr3.3:15557783-15557802 MS.gene057902:intron 40.0%
CTCGCTTATATTTGCGATTG+AGG - chr3.3:15560585-15560604 None:intergenic 40.0%
CTGCTAATCCATAGTTTGGT+TGG - chr3.3:15560186-15560205 None:intergenic 40.0%
GATAATGTCACAGTTGTCAC+AGG - chr3.3:15559490-15559509 None:intergenic 40.0%
GATCCTGTAGCTAAATGAAG+TGG - chr3.3:15560901-15560920 None:intergenic 40.0%
GGTGGTGAAATTATTGGAGT+GGG + chr3.3:15558407-15558426 MS.gene057902:intron 40.0%
GGTTCTTCCTTCTCTTCTTT+AGG - chr3.3:15559517-15559536 None:intergenic 40.0%
GTTGAAATTCATGGAGCTCA+TGG + chr3.3:15557816-15557835 MS.gene057902:CDS 40.0%
TAATCCATAGTTTGGTTGGG+AGG - chr3.3:15560182-15560201 None:intergenic 40.0%
TGAGCTGCGATTCAATTCAT+GGG + chr3.3:15558783-15558802 MS.gene057902:intron 40.0%
TGCAAGTATTACATCCTTCC+GGG - chr3.3:15557960-15557979 None:intergenic 40.0%
TGTAGTAGCAATAGGAATGG+TGG + chr3.3:15559427-15559446 MS.gene057902:CDS 40.0%
TTAACACTGGCATTCAGTTC+CGG - chr3.3:15559953-15559972 None:intergenic 40.0%
TTAGAGGAAGAAGAAAACGG+TGG - chr3.3:15557422-15557441 None:intergenic 40.0%
TTCATTTAGCTACAGGATCC+CGG + chr3.3:15560902-15560921 MS.gene057902:CDS 40.0%
TTCCGGCCAACATTTGAATT+CGG - chr3.3:15560137-15560156 None:intergenic 40.0%
TTCTTCCTCTAATCTTCGGT+AGG + chr3.3:15557430-15557449 MS.gene057902:intron 40.0%
TTGAATCGCAGCTCAATCAT+AGG - chr3.3:15558778-15558797 None:intergenic 40.0%
TTGAGCTGCGATTCAATTCA+TGG + chr3.3:15558782-15558801 MS.gene057902:intron 40.0%
! ACAAATCTTCGGTGCAATTC+CGG - chr3.3:15559732-15559751 None:intergenic 40.0%
! AGTGTTTTCAAACTCCCTCT+TGG - chr3.3:15559006-15559025 None:intergenic 40.0%
! CAAAGCAAAGTTTTCCCAAG+AGG + chr3.3:15558988-15559007 MS.gene057902:CDS 40.0%
! GATTGAGAAGCAGTTCTAAC+AGG + chr3.3:15559605-15559624 MS.gene057902:CDS 40.0%
! GCATTCTTTTCTAACTCCTG+AGG + chr3.3:15559549-15559568 MS.gene057902:CDS 40.0%
! GTGTTTTCAAACTCCCTCTT+GGG - chr3.3:15559005-15559024 None:intergenic 40.0%
! TGTCTGGTTATGAGGCATTT+AGG + chr3.3:15560662-15560681 MS.gene057902:intron 40.0%
! TGTTTGGTGAACGCTGAAAA+GGG + chr3.3:15559357-15559376 MS.gene057902:intron 40.0%
! TTGTTTGGTGAACGCTGAAA+AGG + chr3.3:15559356-15559375 MS.gene057902:intron 40.0%
!! CAACCAAACTATGGATTAGC+AGG + chr3.3:15560184-15560203 MS.gene057902:intron 40.0%
!!! TTGGCAAAGGTGTTTTGGTT+TGG + chr3.3:15559272-15559291 MS.gene057902:intron 40.0%
AAGAGTCTGAGGGAAGGATT+TGG + chr3.3:15559574-15559593 MS.gene057902:CDS 45.0%
ATGATCGGAAAAGTGATCGG+CGG + chr3.3:15557264-15557283 MS.gene057902:CDS 45.0%
CTAGGAAACAGAGGAGATGT+TGG + chr3.3:15559703-15559722 MS.gene057902:CDS 45.0%
GAGTTGGGAAAATTGTTCCC+CGG + chr3.3:15557939-15557958 MS.gene057902:intron 45.0%
GCAAGTATTACATCCTTCCG+GGG - chr3.3:15557959-15557978 None:intergenic 45.0%
GCGATTCAATTCATGGGAGT+TGG + chr3.3:15558789-15558808 MS.gene057902:CDS 45.0%
GCTTCTCTCATCTCATCTTG+TGG - chr3.3:15558175-15558194 None:intergenic 45.0%
GTATGTGCATTCACAGTGTC+TGG + chr3.3:15560646-15560665 MS.gene057902:intron 45.0%
GTTAATGCGTTGCAGAAGCT+TGG + chr3.3:15559750-15559769 MS.gene057902:CDS 45.0%
TACGCAATCCCTAACTTCAC+TGG - chr3.3:15560049-15560068 None:intergenic 45.0%
TCATTTAGCTACAGGATCCC+GGG + chr3.3:15560903-15560922 MS.gene057902:CDS 45.0%
TCCATGCTATCACCTTCAGT+TGG - chr3.3:15560940-15560959 None:intergenic 45.0%
TCCCGAATTCAAATGTTGGC+CGG + chr3.3:15560132-15560151 MS.gene057902:intron 45.0%
TCCGGCCAACATTTGAATTC+GGG - chr3.3:15560136-15560155 None:intergenic 45.0%
TCTTAACCTTCCGATTCCGA+GGG - chr3.3:15560219-15560238 None:intergenic 45.0%
TGAGATGCTATATGCAACGC+TGG - chr3.3:15558011-15558030 None:intergenic 45.0%
TGATCAGTACCACTTGCAGT+TGG - chr3.3:15560784-15560803 None:intergenic 45.0%
TGTTTCCTAGAAGTCTGCTG+CGG - chr3.3:15559693-15559712 None:intergenic 45.0%
! AGCAGACTTCTAGGAAACAG+AGG + chr3.3:15559694-15559713 MS.gene057902:CDS 45.0%
! CACTTTTGTTGGAGGCCTTA+GGG - chr3.3:15559148-15559167 None:intergenic 45.0%
! GCTAAATGAAGTGGACTCTG+TGG - chr3.3:15560892-15560911 None:intergenic 45.0%
!! TCACTTTTGTTGGAGGCCTT+AGG - chr3.3:15559149-15559168 None:intergenic 45.0%
AATGCGTTGCAGAAGCTTGG+AGG + chr3.3:15559753-15559772 MS.gene057902:CDS 50.0%
ACACAACTCATGCTGCTGCT+AGG + chr3.3:15558671-15558690 MS.gene057902:CDS 50.0%
ACAGAGGAGATGTTGGTCAC+CGG + chr3.3:15559710-15559729 MS.gene057902:CDS 50.0%
ACGCTGAAAAGGGAGGAAGA+AGG + chr3.3:15559367-15559386 MS.gene057902:intron 50.0%
ACTGCACAAATGTGGCCGTT+GGG + chr3.3:15559023-15559042 MS.gene057902:CDS 50.0%
CAGAAGCTTGGAGGTTCTCA+AGG + chr3.3:15559762-15559781 MS.gene057902:CDS 50.0%
CATTTAGCTACAGGATCCCG+GGG + chr3.3:15560904-15560923 MS.gene057902:CDS 50.0%
CTCTTCCAAGGGTAGCAGTA+CGG + chr3.3:15560855-15560874 MS.gene057902:CDS 50.0%
GAGATCAGTGTGTTCGATGG+CGG - chr3.3:15557400-15557419 None:intergenic 50.0%
GCCAACTGAAGGTGATAGCA+TGG + chr3.3:15560936-15560955 MS.gene057902:CDS 50.0%
GCTCGAATGGGTGAATTCCT+TGG + chr3.3:15559048-15559067 MS.gene057902:CDS 50.0%
GGGCCTGCTAATCCATAGTT+TGG - chr3.3:15560190-15560209 None:intergenic 50.0%
GTCTTAACCTTCCGATTCCG+AGG - chr3.3:15560220-15560239 None:intergenic 50.0%
GTGGAGATCAGTGTGTTCGA+TGG - chr3.3:15557403-15557422 None:intergenic 50.0%
TCCTGAGGTGAAGAGTCTGA+GGG + chr3.3:15559564-15559583 MS.gene057902:CDS 50.0%
TGATCGGAAAAGTGATCGGC+GGG + chr3.3:15557265-15557284 MS.gene057902:CDS 50.0%
TGGGAAAATTGTTCCCCGGA+AGG + chr3.3:15557943-15557962 MS.gene057902:intron 50.0%
TTGGTGAACGCTGAAAAGGG+AGG + chr3.3:15559360-15559379 MS.gene057902:intron 50.0%
! AGGGAAGGATTTGGTTCGAG+GGG + chr3.3:15559583-15559602 MS.gene057902:CDS 50.0%
! GAGGGAAGGATTTGGTTCGA+GGG + chr3.3:15559582-15559601 MS.gene057902:CDS 50.0%
! TAGTGGATCGATGGATGTGC+CGG + chr3.3:15559931-15559950 MS.gene057902:intron 50.0%
! TGAGGGAAGGATTTGGTTCG+AGG + chr3.3:15559581-15559600 MS.gene057902:CDS 50.0%
!! TTGGAGTGGGTTGTGTTCTC+AGG + chr3.3:15558420-15558439 MS.gene057902:intron 50.0%
AAGGGTAGCAGTACGGCTTC+TGG + chr3.3:15560862-15560881 MS.gene057902:CDS 55.0%
ACCTTCCGATTCCGAGGGAA+AGG - chr3.3:15560214-15560233 None:intergenic 55.0%
ACGGTAGGAGGAGACAACGA+CGG - chr3.3:15559637-15559656 None:intergenic 55.0%
AGAAGCCGTACTGCTACCCT+TGG - chr3.3:15560863-15560882 None:intergenic 55.0%
CACCCATTCGAGCTTCCCAA+CGG - chr3.3:15559041-15559060 None:intergenic 55.0%
CACTGCACAAATGTGGCCGT+TGG + chr3.3:15559022-15559041 MS.gene057902:CDS 55.0%
CGGAGAGTTCCAACTGCAAG+TGG + chr3.3:15560772-15560791 MS.gene057902:CDS 55.0%
CTCCTGAGGTGAAGAGTCTG+AGG + chr3.3:15559563-15559582 MS.gene057902:CDS 55.0%
GAGGTGAAGAGTCTGAGGGA+AGG + chr3.3:15559568-15559587 MS.gene057902:CDS 55.0%
GGAGGGTCATTGCCAACTGA+AGG + chr3.3:15560925-15560944 MS.gene057902:CDS 55.0%
TCCCTCAGACTCTTCACCTC+AGG - chr3.3:15559568-15559587 None:intergenic 55.0%
TCCGATTCCGAGGGAAAGGA+GGG - chr3.3:15560210-15560229 None:intergenic 55.0%
TCCTTTCCCTCGGAATCGGA+AGG + chr3.3:15560210-15560229 MS.gene057902:intron 55.0%
TTCAGCCGCAGCAGACTTCT+AGG + chr3.3:15559685-15559704 MS.gene057902:CDS 55.0%
TTCCGATTCCGAGGGAAAGG+AGG - chr3.3:15560211-15560230 None:intergenic 55.0%
!! AGTGTGTTCGATGGCGGAGA+CGG - chr3.3:15557394-15557413 None:intergenic 55.0%
AGTTGGCAATGACCCTCCCC+GGG - chr3.3:15560923-15560942 None:intergenic 60.0%
ATACTCGGCTGCACGGTAGG+AGG - chr3.3:15559649-15559668 None:intergenic 60.0%
ATCGGCGGGAGGGTTAGAGA+GGG + chr3.3:15557279-15557298 MS.gene057902:CDS 60.0%
CAGTTGGCAATGACCCTCCC+CGG - chr3.3:15560924-15560943 None:intergenic 60.0%
CGGAAAAGTGATCGGCGGGA+GGG + chr3.3:15557269-15557288 MS.gene057902:CDS 60.0%
GAAGTCTGCTGCGGCTGAAG+TGG - chr3.3:15559684-15559703 None:intergenic 60.0%
GCCCTCCTTTCCCTCGGAAT+CGG + chr3.3:15560206-15560225 MS.gene057902:intron 60.0%
GGCCGTTGGGAAGCTCGAAT+GGG + chr3.3:15559036-15559055 MS.gene057902:CDS 60.0%
TAGCAGGCCCTCCTTTCCCT+CGG + chr3.3:15560200-15560219 MS.gene057902:intron 60.0%
TAGCTACAGGATCCCGGGGA+GGG + chr3.3:15560908-15560927 MS.gene057902:CDS 60.0%
TCGGAAAAGTGATCGGCGGG+AGG + chr3.3:15557268-15557287 MS.gene057902:CDS 60.0%
TGGCCGTTGGGAAGCTCGAA+TGG + chr3.3:15559035-15559054 MS.gene057902:CDS 60.0%
TGGCGCAAGACGCGCATACT+CGG - chr3.3:15559664-15559683 None:intergenic 60.0%
TTAGCTACAGGATCCCGGGG+AGG + chr3.3:15560907-15560926 MS.gene057902:CDS 60.0%
CGCATACTCGGCTGCACGGT+AGG - chr3.3:15559652-15559671 None:intergenic 65.0%
GACGCGCATACTCGGCTGCA+CGG - chr3.3:15559656-15559675 None:intergenic 65.0%
GATCGGCGGGAGGGTTAGAG+AGG + chr3.3:15557278-15557297 MS.gene057902:CDS 65.0%
GGCGAGGACGACGGCAGAAA+CGG - chr3.3:15557373-15557392 None:intergenic 65.0%
CGGCAGAAACGGCGTGGTCG+CGG - chr3.3:15557362-15557381 None:intergenic 70.0%
GAAACGGCGTGGTCGCGGGT+AGG - chr3.3:15557357-15557376 None:intergenic 70.0%
GGACGACGGCAGAAACGGCG+TGG - chr3.3:15557368-15557387 None:intergenic 70.0%
GGCAGAAACGGCGTGGTCGC+GGG - chr3.3:15557361-15557380 None:intergenic 70.0%
!! GTTCGATGGCGGAGACGGCG+AGG - chr3.3:15557389-15557408 None:intergenic 70.0%
GGCGGAGACGGCGAGGACGA+CGG - chr3.3:15557382-15557401 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 15557264 15561014 15557264 ID=MS.gene057902
chr3.3 mRNA 15557264 15561014 15557264 ID=MS.gene057902.t1;Parent=MS.gene057902
chr3.3 exon 15557264 15557447 15557264 ID=MS.gene057902.t1.exon1;Parent=MS.gene057902.t1
chr3.3 CDS 15557264 15557447 15557264 ID=cds.MS.gene057902.t1;Parent=MS.gene057902.t1
chr3.3 exon 15557805 15557857 15557805 ID=MS.gene057902.t1.exon2;Parent=MS.gene057902.t1
chr3.3 CDS 15557805 15557857 15557805 ID=cds.MS.gene057902.t1;Parent=MS.gene057902.t1
chr3.3 exon 15558662 15558692 15558662 ID=MS.gene057902.t1.exon3;Parent=MS.gene057902.t1
chr3.3 CDS 15558662 15558692 15558662 ID=cds.MS.gene057902.t1;Parent=MS.gene057902.t1
chr3.3 exon 15558787 15558860 15558787 ID=MS.gene057902.t1.exon4;Parent=MS.gene057902.t1
chr3.3 CDS 15558787 15558860 15558787 ID=cds.MS.gene057902.t1;Parent=MS.gene057902.t1
chr3.3 exon 15558943 15559076 15558943 ID=MS.gene057902.t1.exon5;Parent=MS.gene057902.t1
chr3.3 CDS 15558943 15559076 15558943 ID=cds.MS.gene057902.t1;Parent=MS.gene057902.t1
chr3.3 exon 15559378 15559630 15559378 ID=MS.gene057902.t1.exon6;Parent=MS.gene057902.t1
chr3.3 CDS 15559378 15559630 15559378 ID=cds.MS.gene057902.t1;Parent=MS.gene057902.t1
chr3.3 exon 15559666 15559783 15559666 ID=MS.gene057902.t1.exon7;Parent=MS.gene057902.t1
chr3.3 CDS 15559666 15559783 15559666 ID=cds.MS.gene057902.t1;Parent=MS.gene057902.t1
chr3.3 exon 15560367 15560443 15560367 ID=MS.gene057902.t1.exon8;Parent=MS.gene057902.t1
chr3.3 CDS 15560367 15560443 15560367 ID=cds.MS.gene057902.t1;Parent=MS.gene057902.t1
chr3.3 exon 15560754 15561014 15560754 ID=MS.gene057902.t1.exon9;Parent=MS.gene057902.t1
chr3.3 CDS 15560754 15561014 15560754 ID=cds.MS.gene057902.t1;Parent=MS.gene057902.t1
Gene Sequence

>MS.gene057902

ATGATCGGAAAAGTGATCGGCGGGAGGGTTAGAGAGGGAACAAAGAACACGATTTCATCTTCTTCTCTCTATAACGCGTTCTCTGTAAAACCTACCCGCGACCACGCCGTTTCTGCCGTCGTCCTCGCCGTCTCCGCCATCGAACACACTGATCTCCACCGTTTTCTTCTTCCTCTAATCTTCGGTAGGTTAGTTCCTCTTCCTTTATTCAATGACATGCATGTTATGGATTTAGTTGTTTTTGTTTGTTCAGATTTCTCTCTCTCTCTCTCTCTCTATGATTTTGGTGATCGATTACATGTTAATGGCTTTGTTCTGTAGAAACTAATTTTTTGTGTGTTTTTATGTTAAAATGTTAAAAACTGTGTGAAAAGGGAAAATGATACTACAAAATGGTTTATTTTTTAATTGGGTTTTCATTATGATGTTAAAGTTTTGAACTTTTTGAGTTTTTGGAATCTGGGTTGTTAAAAATTAAAAATGGAGTGTTGGTGGAGTTGCTGAAAATCAAGTAACATGCTCAATGTGATGCAAATTGCAGGTTTTGATGGTGTTGAAATTCATGGAGCTCATGGTTACAGAATCTTTGTTTTGGTGAGAATAACTACTACTCAAAATTGTTTATATTAGAAACACATTTTCAATCTTTGTTGATGAACTTGTGTTCAATTGAATGAGTTGGGAAAATTGTTCCCCGGAAGGATGTAATACTTGCATACAATAAATGACTGCAGAGCATGTCTGCCAGCGTTGCATATAGCATCTCATTTTGAATTGCATGATAGTTTTTCGCAGTTGTTCTTTAAAATGTGAATGAGTTCTAGACTTATGAATTAGTGGTTAGTAGAATTACTTACAAAATATTTATAATAAACCTACAAGATGAGATTTGAAGGACTCCTCATACACCACAAGATGAGATGAGAGAAGCAATGAGCTACTTTCTTTAGACAATTTGGAATGGAGTGCCAAATTATTGTAGATGATCATATCATAGGTTTGTACCTCTTTTTATGGTGTTTTTCATTTTACAATCAATTTTTTATGCTTGGTTGATATCACTTTACAGTGATATAGATGATTTTATATGTGATTGTAAAATTGCATCCTTCATTTTCCTGATTTATTTTCTTATTTTTTGAAGGTGGTGAAATTATTGGAGTGGGTTGTGTTCTCAGGATTTCTTTTGGTTTCCTTTTTTGTTTGTTTGTTGTTGTAGATGATCTTATATGTGCCTCTATATTGATTTTAAATGATCGCCATGCATGTTTCTTTTTTGTGATATTCTTTTTAGTTTCTTTGTTTTTAATCGATGGTGAGGTTATATTATATGATTTACTATTTTAGGCATTGTTTGTGTTTTTGATGAAATTTGAAATTTGTGTTTGATTTTTGTAGGTGGATTTGACACAACTCATGCTGCTGCTAGGTAAATCTTTGAACATATTTTCAATTTTTTGTGTAATTGATTTTTTTATTGTTGAGTTGATTCCAAATTTTGAATATCAGAGCCTATGATTGAGCTGCGATTCAATTCATGGGAGTTGGTGCTGACATAAATTTCAATTTGAATGATTATGATGATGATCTTAAACAGGTTAGAGAATTTTCAAGTATACTTGATGAATGTGAAACTAGATGGAGTATATCATGTAATTTTTCGATATTTTGTTACTTAGACGAAGAATTTATTGAAAGAAGAGTTTGTGCAAATACTTCGTCTACAAAGCAAAGTTTTCCCAAGAGGGAGTTTGAAAACACTGCACAAATGTGGCCGTTGGGAAGCTCGAATGGGTGAATTCCTTGGTAAAAAGTGAGAACCTATTTTTAATTTAACTGAAGTTATTTACTATGACCACATGAGATATTATGAATTTAAAACCCTAAGGCCTCCAACAAAAGTGAATCAGTTTCAACATAATTCTCGACACACTTTTAGGCTCTTTATCGTGTTATGAGAAACATGTATAAGATAATATCATACATGTTTCTGAGAATTGAGAAAGAATTGGCAAAGGTGTTTTGGTTTGGTTATAGAGATTGTGATGCTTTCGTATTTGTTTTGTTTTGGTTATTAATGAGGGTTTTGTATTTGTTTGGTGAACGCTGAAAAGGGAGGAAGAAGGACAATTTGTGACTGTAGCTGAAGACCCTTTTCAATCTTGTAGTAGCAATAGGAATGGTGGAAGTGCTTTTATGCCCTTTTCAGCGTATTCTTCTGTTCCTGTGACAACTGTGACATTATCAGCACCTAAAGAAGAGAAGGAAGAACCTGTAAGGAATAGGCATTCTTTTCTAACTCCTGAGGTGAAGAGTCTGAGGGAAGGATTTGGTTCGAGGGGATTGAGAAGCAGTTCTAACAGGGCAGTTCCGTCGTTGTCTCCTCCTACCGTGCAGCCGAGTATGCGCGTCTTGCGCCACTTCAGCCGCAGCAGACTTCTAGGAAACAGAGGAGATGTTGGTCACCGGAATTGCACCGAAGATTTGTTAATGCGTTGCAGAAGCTTGGAGGTTCTCAAGGTATGAATTTGAAACTTTACTGTTTTTGTGATGTAGCATATGTTTCACTTTCTTAAATTAGAAATGTACATATATTTAATATCTTATATAGTTGTGCTGTGAGGTTTCAAAACACTCAATTTTGACCAATTTGGAAATATTATAGATTAGTGGATCGATGGATGTGCCGGAACTGAATGCCAGTGTTAAAAGTTTAAGGATTTGATGCTTGAAGTTGTGTTGATGTGAAATTTTAAAGAAAATGTTTGTTCTGTTTAGTTCACCAGTGAAGTTAGGGATTGCGTAAATTTAGATAAGCAAGGAGACAAATAGGAGTGTTATCTATAGACAAGTCAATTTGTAGGTATATCCCGAATTCAAATGTTGGCCGGAACAATCCTTGATCAGATTAATAACCTCCCAACCAAACTATGGATTAGCAGGCCCTCCTTTCCCTCGGAATCGGAAGGTTAAGACCAAAAAACATATAAGCCTATCAAGTCCAAATGATTTGCCTTAGCAATTTTGCATACATAGTTTTGGTATGTTGTAATAACATTACATTTGTTTGGTTCATTTGTCTAATTAGCTGTTTTAACTGCAGCAGCAACTCCAAAGCAAATTAGAGAACTGATACAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTACAAGTAAGTTTTTGGATTTCTTTTTATTTTTCTCCTCTTAACTGCGTGCTTTATTAAGCTTAGTTACTAGGTGTTTGATGATGGTTTATGATATAGTTAATTTAATACAGTATTAATTATATTATGTTGCTATTGAAGTATCCTCAATCGCAAATATAAGCGAGGTATACTAGATGGTATTTATGATGATGATGAATATCATATTGTATGTGCATTCACAGTGTCTGGTTATGAGGCATTTAGGATTGAGATTTGGTTGTGTTATAAAGTTTGAACTGGATGTTTGACATATGATTCTTGATTATTATTGCAGAAATACAGATTTCATACACGGAGAGTTCCAACTGCAAGTGGTACTGATCAGTCTGTTGTATTTCTTGGAGGTTTATGGATGCCTCAAGAACAATACAATGACTCTTCCAAGGGTAGCAGTACGGCTTCTGGTTCTCCACAGAGTCCACTTCATTTAGCTACAGGATCCCGGGGAGGGTCATTGCCAACTGAAGGTGATAGCATGGAAGATGACAATGATGAAAAATCTGAGAATTATAGCTGGAAAAGTCATATTCACTGA
Protein sequence

>MS.gene057902.t1

MIGKVIGGRVREGTKNTISSSSLYNAFSVKPTRDHAVSAVVLAVSAIEHTDLHRFLLPLIFGFDGVEIHGAHGYRIFVLVDLTQLMLLLAAIQFMGVGADINFNLNDYDDDLKQTKNLLKEEFVQILRLQSKVFPRGSLKTLHKCGRWEARMGEFLGKKEEEGQFVTVAEDPFQSCSSNRNGGSAFMPFSAYSSVPVTTVTLSAPKEEKEEPVRNRHSFLTPEVKSLREGFGSRGLRSSSNRAYARLAPLQPQQTSRKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELIQVDGLTNDEVKSHLQKYRFHTRRVPTASGTDQSVVFLGGLWMPQEQYNDSSKGSSTASGSPQSPLHLATGSRGGSLPTEGDSMEDDNDEKSENYSWKSHIH