Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057948.t1 | XP_024626525.1 | 92.3 | 181 | 13 | 1 | 59 | 238 | 1 | 181 | 1.90E-89 | 339 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057948.t1 | Q9SZL8 | 37.6 | 149 | 86 | 4 | 90 | 232 | 46 | 193 | 1.0e-17 | 92.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057948.t1 | A0A072TFJ2 | 95.3 | 149 | 7 | 0 | 90 | 238 | 1 | 149 | 1.7e-74 | 288.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene057948.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057948.t1 | MTR_0402s0040 | 95.302 | 149 | 7 | 0 | 90 | 238 | 1 | 149 | 7.76e-103 | 307 |
| MS.gene057948.t1 | MTR_6g017200 | 90.909 | 154 | 13 | 1 | 59 | 211 | 1 | 154 | 1.09e-102 | 295 |
| MS.gene057948.t1 | MTR_2g070590 | 91.525 | 118 | 10 | 0 | 101 | 218 | 3 | 120 | 6.76e-77 | 228 |
| MS.gene057948.t1 | MTR_1g057920 | 79.310 | 116 | 24 | 0 | 89 | 204 | 8 | 123 | 2.32e-64 | 197 |
| MS.gene057948.t1 | MTR_7g113010 | 64.901 | 151 | 38 | 2 | 89 | 238 | 431 | 567 | 2.71e-57 | 192 |
| MS.gene057948.t1 | MTR_5g015480 | 65.753 | 146 | 45 | 2 | 91 | 235 | 36 | 177 | 2.80e-57 | 183 |
| MS.gene057948.t1 | MTR_0291s0060 | 77.381 | 84 | 19 | 0 | 82 | 165 | 2 | 85 | 1.34e-41 | 137 |
| MS.gene057948.t1 | MTR_0137s0040 | 67.532 | 77 | 25 | 0 | 91 | 167 | 12 | 88 | 1.28e-33 | 118 |
| MS.gene057948.t1 | MTR_1g050985 | 68.852 | 61 | 18 | 1 | 187 | 246 | 41 | 101 | 5.58e-20 | 82.4 |
| MS.gene057948.t1 | MTR_7g061980 | 40.708 | 113 | 62 | 4 | 115 | 225 | 10 | 119 | 7.28e-18 | 77.4 |
| MS.gene057948.t1 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 115 | 219 | 56 | 158 | 3.17e-17 | 78.6 |
| MS.gene057948.t1 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 115 | 219 | 56 | 158 | 3.57e-17 | 78.6 |
| MS.gene057948.t1 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 115 | 219 | 76 | 178 | 5.33e-17 | 78.2 |
| MS.gene057948.t1 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 115 | 219 | 76 | 178 | 5.62e-17 | 78.2 |
| MS.gene057948.t1 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 115 | 219 | 74 | 176 | 5.62e-17 | 78.2 |
| MS.gene057948.t1 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 115 | 219 | 116 | 218 | 6.58e-17 | 78.6 |
| MS.gene057948.t1 | MTR_4g102720 | 43.210 | 81 | 45 | 1 | 115 | 195 | 7 | 86 | 8.13e-17 | 77.4 |
| MS.gene057948.t1 | MTR_1g091013 | 51.282 | 78 | 27 | 1 | 106 | 183 | 3 | 69 | 4.09e-16 | 71.2 |
| MS.gene057948.t1 | MTR_2g098920 | 40.187 | 107 | 58 | 3 | 115 | 219 | 80 | 182 | 4.51e-16 | 75.9 |
| MS.gene057948.t1 | MTR_3g006370 | 38.462 | 104 | 62 | 2 | 115 | 217 | 50 | 152 | 2.02e-14 | 70.9 |
| MS.gene057948.t1 | MTR_5g039760 | 38.525 | 122 | 69 | 5 | 119 | 237 | 14 | 132 | 1.38e-12 | 65.1 |
| MS.gene057948.t1 | MTR_2g098880 | 32.593 | 135 | 86 | 4 | 115 | 245 | 61 | 194 | 4.81e-12 | 64.3 |
| MS.gene057948.t1 | MTR_2g098880 | 32.593 | 135 | 86 | 4 | 115 | 245 | 73 | 206 | 7.76e-12 | 63.9 |
| MS.gene057948.t1 | MTR_1g019850 | 29.333 | 150 | 89 | 4 | 87 | 231 | 43 | 180 | 1.13e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057948.t1 | AT4G38180 | 37.584 | 149 | 86 | 4 | 90 | 232 | 46 | 193 | 1.79e-20 | 90.9 |
| MS.gene057948.t1 | AT3G59470 | 35.762 | 151 | 85 | 3 | 82 | 222 | 27 | 175 | 2.02e-17 | 79.3 |
| MS.gene057948.t1 | AT3G59470 | 35.762 | 151 | 85 | 3 | 82 | 222 | 27 | 175 | 2.02e-17 | 79.3 |
| MS.gene057948.t1 | AT3G59470 | 35.762 | 151 | 85 | 3 | 82 | 222 | 39 | 187 | 2.56e-17 | 79.3 |
| MS.gene057948.t1 | AT4G12850 | 37.705 | 122 | 70 | 4 | 108 | 229 | 4 | 119 | 9.83e-17 | 75.1 |
| MS.gene057948.t1 | AT4G12850 | 34.932 | 146 | 84 | 5 | 108 | 253 | 4 | 138 | 4.61e-16 | 74.3 |
| MS.gene057948.t1 | AT4G12850 | 38.739 | 111 | 64 | 3 | 108 | 218 | 4 | 110 | 5.96e-16 | 72.8 |
| MS.gene057948.t1 | AT3G07500 | 40.000 | 105 | 62 | 1 | 115 | 219 | 33 | 136 | 1.27e-14 | 71.2 |
| MS.gene057948.t1 | AT1G76320 | 35.135 | 111 | 68 | 2 | 119 | 229 | 1 | 107 | 2.22e-14 | 72.8 |
| MS.gene057948.t1 | AT1G76320 | 35.135 | 111 | 68 | 2 | 119 | 229 | 1 | 107 | 2.22e-14 | 72.8 |
| MS.gene057948.t1 | AT1G76320 | 35.135 | 111 | 68 | 2 | 119 | 229 | 1 | 107 | 2.26e-14 | 72.8 |
| MS.gene057948.t1 | AT1G76320 | 35.135 | 111 | 68 | 2 | 119 | 229 | 1 | 107 | 3.17e-14 | 72.4 |
| MS.gene057948.t1 | AT2G43280 | 38.318 | 107 | 58 | 3 | 115 | 217 | 22 | 124 | 2.03e-13 | 67.8 |
| MS.gene057948.t1 | AT5G18960 | 37.383 | 107 | 51 | 3 | 115 | 220 | 43 | 134 | 6.26e-12 | 65.5 |
| MS.gene057948.t1 | AT5G18960 | 37.383 | 107 | 51 | 3 | 115 | 220 | 43 | 134 | 6.26e-12 | 65.5 |
| MS.gene057948.t1 | AT3G06250 | 34.586 | 133 | 70 | 4 | 115 | 246 | 28 | 144 | 8.76e-12 | 65.1 |
| MS.gene057948.t1 | AT3G06250 | 34.586 | 133 | 70 | 4 | 115 | 246 | 28 | 144 | 8.76e-12 | 65.1 |
| MS.gene057948.t1 | AT3G06250 | 34.586 | 133 | 70 | 4 | 115 | 246 | 28 | 144 | 8.76e-12 | 65.1 |
| MS.gene057948.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 119 | 224 | 42 | 143 | 2.80e-11 | 63.5 |
| MS.gene057948.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 119 | 224 | 42 | 143 | 2.84e-11 | 63.5 |
| MS.gene057948.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 119 | 224 | 42 | 143 | 2.84e-11 | 63.5 |
| MS.gene057948.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 119 | 224 | 42 | 143 | 2.97e-11 | 63.5 |
| MS.gene057948.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 119 | 224 | 42 | 143 | 2.97e-11 | 63.5 |
| MS.gene057948.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 119 | 224 | 42 | 143 | 2.97e-11 | 63.5 |
| MS.gene057948.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 119 | 224 | 1 | 102 | 3.01e-11 | 63.5 |
| MS.gene057948.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 119 | 224 | 1 | 102 | 3.19e-11 | 63.5 |
| MS.gene057948.t1 | AT2G43280 | 38.043 | 92 | 49 | 3 | 130 | 217 | 2 | 89 | 8.25e-11 | 59.7 |
Find 62 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGATTGTGTCAATAAAT+TGG | 0.215486 | 3.4:+15517888 | MS.gene057948:intron |
| AGAGGTGGCTTCGATGATTA+TGG | 0.243284 | 3.4:-15517256 | None:intergenic |
| TTTGGTATTCGTCGAGAATA+TGG | 0.287007 | 3.4:+15518045 | MS.gene057948:CDS |
| TCTGCTCTAGGCTCCCCTTT+TGG | 0.322934 | 3.4:-15518156 | None:intergenic |
| AATGAGTATAGTAAAAGAAT+TGG | 0.336174 | 3.4:+15518021 | MS.gene057948:CDS |
| GGAAATAAAAGCAGAGTTGA+TGG | 0.361988 | 3.4:+15518066 | MS.gene057948:CDS |
| TATAGTAAAAGAATTGGATT+TGG | 0.393932 | 3.4:+15518027 | MS.gene057948:CDS |
| AGAAATTAGAACAGGATGTT+TGG | 0.398022 | 3.4:+15518176 | MS.gene057948:CDS |
| TCGCCGCTGCACCTCTCTCT+TGG | 0.403644 | 3.4:+15517316 | MS.gene057948:CDS |
| CCTGTTCTAATTTCTGCTCT+AGG | 0.415588 | 3.4:-15518168 | None:intergenic |
| AACAGGATGTTTGGCGCGTA+TGG | 0.429347 | 3.4:+15518185 | MS.gene057948:CDS |
| GAGGTGGCTTCGATGATTAT+GGG | 0.448721 | 3.4:-15517255 | None:intergenic |
| GGATGGTCGGAGACGGCGGC+GGG | 0.459149 | 3.4:-15517392 | None:intergenic |
| GACAAAAGACGTCAACCAAA+AGG | 0.461065 | 3.4:+15518141 | MS.gene057948:CDS |
| TAGTGTTGGTAGCAGGATGA+TGG | 0.465525 | 3.4:-15517364 | None:intergenic |
| GGGATGGTCGGAGACGGCGG+CGG | 0.467480 | 3.4:-15517393 | None:intergenic |
| GGTTCGTTAGTGTTGGTAGC+AGG | 0.468658 | 3.4:-15517371 | None:intergenic |
| GCTGCCATTGTTGTTGATCA+AGG | 0.480338 | 3.4:+15517422 | MS.gene057948:CDS |
| AGTGTTGGTAGCAGGATGAT+GGG | 0.490017 | 3.4:-15517363 | None:intergenic |
| ACAAAAGACGTCAACCAAAA+GGG | 0.496414 | 3.4:+15518142 | MS.gene057948:CDS |
| TGCCAACAATGTACCTCACT+TGG | 0.498928 | 3.4:+15517957 | MS.gene057948:CDS |
| TTCCAAGTGAGGTACATTGT+TGG | 0.502644 | 3.4:-15517959 | None:intergenic |
| AGGTGCAGCGGCGAGAGAGA+AGG | 0.503028 | 3.4:-15517307 | None:intergenic |
| AGAGGTGACGGCGGAGCCGA+TGG | 0.506282 | 3.4:-15517284 | None:intergenic |
| CGAATCATATGAACATGCTC+AGG | 0.508001 | 3.4:-15518282 | None:intergenic |
| CCTAGAGCAGAAATTAGAAC+AGG | 0.510209 | 3.4:+15518168 | MS.gene057948:CDS |
| AACAACAATGGCAGCGGCGT+AGG | 0.511948 | 3.4:-15517414 | None:intergenic |
| CGAGAGAGAAGGAGAGGTGA+CGG | 0.518457 | 3.4:-15517296 | None:intergenic |
| GGAAATGAAGTTTGATTCTG+AGG | 0.525153 | 3.4:+15517978 | MS.gene057948:CDS |
| GGGTTCGCTCATGACGTTGA+CGG | 0.529975 | 3.4:-15517342 | None:intergenic |
| CAATGGCAGCGGCGTAGGGA+TGG | 0.539764 | 3.4:-15517409 | None:intergenic |
| GAGCCGATGGGAAGGAGAGG+TGG | 0.542092 | 3.4:-15517271 | None:intergenic |
| GGCAGCGGCGTAGGGATGGT+CGG | 0.544236 | 3.4:-15517405 | None:intergenic |
| GAAGTTTGATTCTGAGGCAG+CGG | 0.545649 | 3.4:+15517984 | MS.gene057948:CDS |
| GGCGTAGGGATGGTCGGAGA+CGG | 0.546609 | 3.4:-15517399 | None:intergenic |
| ACAACAATGGCAGCGGCGTA+GGG | 0.551851 | 3.4:-15517413 | None:intergenic |
| TGACGGCGGAGCCGATGGGA+AGG | 0.554360 | 3.4:-15517279 | None:intergenic |
| GAGGTGACGGCGGAGCCGAT+GGG | 0.566590 | 3.4:-15517283 | None:intergenic |
| AGGTGGCTTCGATGATTATG+GGG | 0.574034 | 3.4:-15517254 | None:intergenic |
| GTAGGGATGGTCGGAGACGG+CGG | 0.574684 | 3.4:-15517396 | None:intergenic |
| GGCGGCGGGTTCGTTAGTGT+TGG | 0.578521 | 3.4:-15517378 | None:intergenic |
| CAAAATGTGCAACACGGACA+AGG | 0.581561 | 3.4:+15517928 | MS.gene057948:CDS |
| GTGTTGGTAGCAGGATGATG+GGG | 0.582430 | 3.4:-15517362 | None:intergenic |
| GCGGAGCCGATGGGAAGGAG+AGG | 0.584685 | 3.4:-15517274 | None:intergenic |
| GTATGGTTATTTCACTCGAT+CGG | 0.586251 | 3.4:+15518202 | MS.gene057948:CDS |
| AGGCCAAGAGAGAGGTGCAG+CGG | 0.588322 | 3.4:-15517319 | None:intergenic |
| CAGCGGCGAGAGAGAAGGAG+AGG | 0.595013 | 3.4:-15517302 | None:intergenic |
| GAGAGAAGGAGAGGTGACGG+CGG | 0.598157 | 3.4:-15517293 | None:intergenic |
| CATGCTCAGGTTGAAGTTGG+TGG | 0.600927 | 3.4:-15518269 | None:intergenic |
| TCAAACTTCATTTCCAAGTG+AGG | 0.602359 | 3.4:-15517970 | None:intergenic |
| CAAAAGACGTCAACCAAAAG+GGG | 0.607006 | 3.4:+15518143 | MS.gene057948:CDS |
| GAACATGCTCAGGTTGAAGT+TGG | 0.607804 | 3.4:-15518272 | None:intergenic |
| AAGATTCACATGCTACAAAG+AGG | 0.619398 | 3.4:+15518104 | MS.gene057948:CDS |
| TTGATCAACAACAATGGCAG+CGG | 0.628153 | 3.4:-15517420 | None:intergenic |
| TGCTACAAAGAGGGTGTACG+AGG | 0.638548 | 3.4:+15518114 | MS.gene057948:CDS |
| GTTGACGGAGGCCAAGAGAG+AGG | 0.651480 | 3.4:-15517327 | None:intergenic |
| AGATTCACATGCTACAAAGA+GGG | 0.654496 | 3.4:+15518105 | MS.gene057948:CDS |
| CATGAACAAAATGTGCAACA+CGG | 0.658217 | 3.4:+15517922 | MS.gene057948:CDS |
| AAGCCACCTCTCCTTCCCAT+CGG | 0.662631 | 3.4:+15517268 | MS.gene057948:CDS |
| TTCGCTCATGACGTTGACGG+AGG | 0.668655 | 3.4:-15517339 | None:intergenic |
| ATTACCTTGATCAACAACAA+TGG | 0.673823 | 3.4:-15517426 | None:intergenic |
| GGTGGCTTCGATGATTATGG+GGG | 0.689530 | 3.4:-15517253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACTATTAAAAAAACATT+GGG | - | chr3.4:15517632-15517651 | None:intergenic | 10.0% |
| !! | TATTACTATTAAAAAAACAT+TGG | - | chr3.4:15517633-15517652 | None:intergenic | 10.0% |
| !! | AAAACCAAAATTTACAATTA+AGG | - | chr3.4:15517868-15517887 | None:intergenic | 15.0% |
| !! | TTACTATTAAAAAAACATTG+GGG | - | chr3.4:15517631-15517650 | None:intergenic | 15.0% |
| !!! | TATACATATATATAGCTTTA+TGG | + | chr3.4:15517567-15517586 | MS.gene057948:intron | 15.0% |
| !! | AATGAGTATAGTAAAAGAAT+TGG | + | chr3.4:15518021-15518040 | MS.gene057948:CDS | 20.0% |
| !! | TACTATTAAAAAAACATTGG+GGG | - | chr3.4:15517630-15517649 | None:intergenic | 20.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | + | chr3.4:15518027-15518046 | MS.gene057948:CDS | 20.0% |
| !!! | AATAGTAATAGATAGCTTTA+TGG | + | chr3.4:15517643-15517662 | MS.gene057948:intron | 20.0% |
| !!! | TTGATGAAAAATTAGTTTCT+AGG | + | chr3.4:15517512-15517531 | MS.gene057948:intron | 20.0% |
| ! | AACATCATGTAATAAAGAGA+CGG | - | chr3.4:15517481-15517500 | None:intergenic | 25.0% |
| ! | GGCAAATAATAAAATAGAGA+AGG | - | chr3.4:15517460-15517479 | None:intergenic | 25.0% |
| ! | TTCAGATTGTGTCAATAAAT+TGG | + | chr3.4:15517888-15517907 | MS.gene057948:intron | 25.0% |
| AGAAATTAGAACAGGATGTT+TGG | + | chr3.4:15518176-15518195 | MS.gene057948:CDS | 30.0% | |
| ATTACCTTGATCAACAACAA+TGG | - | chr3.4:15517429-15517448 | None:intergenic | 30.0% | |
| TTAAAAAAACATTGGGGGAA+AGG | - | chr3.4:15517625-15517644 | None:intergenic | 30.0% | |
| !! | GTGGCCTTAATTGTAAATTT+TGG | + | chr3.4:15517861-15517880 | MS.gene057948:intron | 30.0% |
| AAGATTCACATGCTACAAAG+AGG | + | chr3.4:15518104-15518123 | MS.gene057948:CDS | 35.0% | |
| ACAAAAGACGTCAACCAAAA+GGG | + | chr3.4:15518142-15518161 | MS.gene057948:CDS | 35.0% | |
| AGATTCACATGCTACAAAGA+GGG | + | chr3.4:15518105-15518124 | MS.gene057948:CDS | 35.0% | |
| CATGAACAAAATGTGCAACA+CGG | + | chr3.4:15517922-15517941 | MS.gene057948:CDS | 35.0% | |
| GGAAATAAAAGCAGAGTTGA+TGG | + | chr3.4:15518066-15518085 | MS.gene057948:CDS | 35.0% | |
| GGAAATGAAGTTTGATTCTG+AGG | + | chr3.4:15517978-15517997 | MS.gene057948:CDS | 35.0% | |
| TCAAACTTCATTTCCAAGTG+AGG | - | chr3.4:15517973-15517992 | None:intergenic | 35.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | + | chr3.4:15518045-15518064 | MS.gene057948:CDS | 35.0% | |
| ! | ATGCAGTCTAAGTTTTCTAG+TGG | + | chr3.4:15517679-15517698 | MS.gene057948:intron | 35.0% |
| ! | ATGTCTGAAATCGTCACTTA+TGG | + | chr3.4:15517839-15517858 | MS.gene057948:intron | 35.0% |
| ! | GTATGGTTATTTCACTCGAT+CGG | + | chr3.4:15518202-15518221 | MS.gene057948:CDS | 35.0% |
| !! | AAAACAACATTCTGAAGTCG+CGG | - | chr3.4:15517787-15517806 | None:intergenic | 35.0% |
| !! | AAGTTTTCTGAGAAAGGAAG+AGG | - | chr3.4:15517222-15517241 | None:intergenic | 35.0% |
| AAAAACATTGGGGGAAAGGA+TGG | - | chr3.4:15517621-15517640 | None:intergenic | 40.0% | |
| CAAAAGACGTCAACCAAAAG+GGG | + | chr3.4:15518143-15518162 | MS.gene057948:CDS | 40.0% | |
| CCTAGAGCAGAAATTAGAAC+AGG | + | chr3.4:15518168-15518187 | MS.gene057948:CDS | 40.0% | |
| CCTGTTCTAATTTCTGCTCT+AGG | - | chr3.4:15518171-15518190 | None:intergenic | 40.0% | |
| CGAATCATATGAACATGCTC+AGG | - | chr3.4:15518285-15518304 | None:intergenic | 40.0% | |
| GACAAAAGACGTCAACCAAA+AGG | + | chr3.4:15518141-15518160 | MS.gene057948:CDS | 40.0% | |
| TTCCAAGTGAGGTACATTGT+TGG | - | chr3.4:15517962-15517981 | None:intergenic | 40.0% | |
| TTGATCAACAACAATGGCAG+CGG | - | chr3.4:15517423-15517442 | None:intergenic | 40.0% | |
| ! | TCTGAAATCGTCACTTATGG+TGG | + | chr3.4:15517842-15517861 | MS.gene057948:intron | 40.0% |
| !! | GGTGGAAAGTTTTCTGAGAA+AGG | - | chr3.4:15517228-15517247 | None:intergenic | 40.0% |
| AGAGGTGGCTTCGATGATTA+TGG | - | chr3.4:15517259-15517278 | None:intergenic | 45.0% | |
| AGGTGGCTTCGATGATTATG+GGG | - | chr3.4:15517257-15517276 | None:intergenic | 45.0% | |
| CAAAATGTGCAACACGGACA+AGG | + | chr3.4:15517928-15517947 | MS.gene057948:CDS | 45.0% | |
| GAGGTGGCTTCGATGATTAT+GGG | - | chr3.4:15517258-15517277 | None:intergenic | 45.0% | |
| TGCCAACAATGTACCTCACT+TGG | + | chr3.4:15517957-15517976 | MS.gene057948:CDS | 45.0% | |
| ! | GCTGCCATTGTTGTTGATCA+AGG | + | chr3.4:15517422-15517441 | MS.gene057948:CDS | 45.0% |
| !! | AGTGTTGGTAGCAGGATGAT+GGG | - | chr3.4:15517366-15517385 | None:intergenic | 45.0% |
| !! | GAACATGCTCAGGTTGAAGT+TGG | - | chr3.4:15518275-15518294 | None:intergenic | 45.0% |
| !! | GAAGTTTGATTCTGAGGCAG+CGG | + | chr3.4:15517984-15518003 | MS.gene057948:CDS | 45.0% |
| !! | TAGTGTTGGTAGCAGGATGA+TGG | - | chr3.4:15517367-15517386 | None:intergenic | 45.0% |
| AACAGGATGTTTGGCGCGTA+TGG | + | chr3.4:15518185-15518204 | MS.gene057948:CDS | 50.0% | |
| ATGATTATGGGGGAGGAAGG+TGG | - | chr3.4:15517246-15517265 | None:intergenic | 50.0% | |
| GGTGGCTTCGATGATTATGG+GGG | - | chr3.4:15517256-15517275 | None:intergenic | 50.0% | |
| TCGATGATTATGGGGGAGGA+AGG | - | chr3.4:15517249-15517268 | None:intergenic | 50.0% | |
| ! | TGCTACAAAGAGGGTGTACG+AGG | + | chr3.4:15518114-15518133 | MS.gene057948:CDS | 50.0% |
| !! | CATGCTCAGGTTGAAGTTGG+TGG | - | chr3.4:15518272-15518291 | None:intergenic | 50.0% |
| !! | GGTTCGTTAGTGTTGGTAGC+AGG | - | chr3.4:15517374-15517393 | None:intergenic | 50.0% |
| !! | GTGTTGGTAGCAGGATGATG+GGG | - | chr3.4:15517365-15517384 | None:intergenic | 50.0% |
| AACAACAATGGCAGCGGCGT+AGG | - | chr3.4:15517417-15517436 | None:intergenic | 55.0% | |
| AAGCCACCTCTCCTTCCCAT+CGG | + | chr3.4:15517268-15517287 | MS.gene057948:CDS | 55.0% | |
| ACAACAATGGCAGCGGCGTA+GGG | - | chr3.4:15517416-15517435 | None:intergenic | 55.0% | |
| CGAGAGAGAAGGAGAGGTGA+CGG | - | chr3.4:15517299-15517318 | None:intergenic | 55.0% | |
| GGCTTCGATGATTATGGGGG+AGG | - | chr3.4:15517253-15517272 | None:intergenic | 55.0% | |
| GGGTTCGCTCATGACGTTGA+CGG | - | chr3.4:15517345-15517364 | None:intergenic | 55.0% | |
| TTCGCTCATGACGTTGACGG+AGG | - | chr3.4:15517342-15517361 | None:intergenic | 55.0% | |
| !! | TCTGCTCTAGGCTCCCCTTT+TGG | - | chr3.4:15518159-15518178 | None:intergenic | 55.0% |
| GTTGACGGAGGCCAAGAGAG+AGG | - | chr3.4:15517330-15517349 | None:intergenic | 60.0% | |
| ! | AGGCCAAGAGAGAGGTGCAG+CGG | - | chr3.4:15517322-15517341 | None:intergenic | 60.0% |
| ! | GAGAGAAGGAGAGGTGACGG+CGG | - | chr3.4:15517296-15517315 | None:intergenic | 60.0% |
| AGGTGCAGCGGCGAGAGAGA+AGG | - | chr3.4:15517310-15517329 | None:intergenic | 65.0% | |
| CAATGGCAGCGGCGTAGGGA+TGG | - | chr3.4:15517412-15517431 | None:intergenic | 65.0% | |
| CAGCGGCGAGAGAGAAGGAG+AGG | - | chr3.4:15517305-15517324 | None:intergenic | 65.0% | |
| GAGCCGATGGGAAGGAGAGG+TGG | - | chr3.4:15517274-15517293 | None:intergenic | 65.0% | |
| GGCGTAGGGATGGTCGGAGA+CGG | - | chr3.4:15517402-15517421 | None:intergenic | 65.0% | |
| GTAGGGATGGTCGGAGACGG+CGG | - | chr3.4:15517399-15517418 | None:intergenic | 65.0% | |
| TCGCCGCTGCACCTCTCTCT+TGG | + | chr3.4:15517316-15517335 | MS.gene057948:CDS | 65.0% | |
| ! | GGCGGCGGGTTCGTTAGTGT+TGG | - | chr3.4:15517381-15517400 | None:intergenic | 65.0% |
| GCGGAGCCGATGGGAAGGAG+AGG | - | chr3.4:15517277-15517296 | None:intergenic | 70.0% | |
| GGCAGCGGCGTAGGGATGGT+CGG | - | chr3.4:15517408-15517427 | None:intergenic | 70.0% | |
| TGACGGCGGAGCCGATGGGA+AGG | - | chr3.4:15517282-15517301 | None:intergenic | 70.0% | |
| ! | AGAGGTGACGGCGGAGCCGA+TGG | - | chr3.4:15517287-15517306 | None:intergenic | 70.0% |
| ! | GAGGTGACGGCGGAGCCGAT+GGG | - | chr3.4:15517286-15517305 | None:intergenic | 70.0% |
| GGATGGTCGGAGACGGCGGC+GGG | - | chr3.4:15517395-15517414 | None:intergenic | 75.0% | |
| GGGATGGTCGGAGACGGCGG+CGG | - | chr3.4:15517396-15517415 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 15517179 | 15518389 | 15517179 | ID=MS.gene057948 |
| chr3.4 | mRNA | 15517179 | 15518389 | 15517179 | ID=MS.gene057948.t1;Parent=MS.gene057948 |
| chr3.4 | exon | 15517179 | 15517443 | 15517179 | ID=MS.gene057948.t1.exon1;Parent=MS.gene057948.t1 |
| chr3.4 | CDS | 15517179 | 15517443 | 15517179 | ID=cds.MS.gene057948.t1;Parent=MS.gene057948.t1 |
| chr3.4 | exon | 15517893 | 15518389 | 15517893 | ID=MS.gene057948.t1.exon2;Parent=MS.gene057948.t1 |
| chr3.4 | CDS | 15517893 | 15518389 | 15517893 | ID=cds.MS.gene057948.t1;Parent=MS.gene057948.t1 |
| Gene Sequence |
| Protein sequence |
