AlfalfaGEDB | MS.gene058298

M. sativa cultivar XinJiangDaYe / MS.gene058298

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058298.t1	GAU51399.1	40.4	663	52	2	1	320	1	663	8.40E-112	414.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058298.t1	Q9SZL8	36.6	175	106	3	4	173	70	244	5.3e-22	107.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058298.t1	A0A2Z6PUD4	40.4	663	52	2	1	320	1	663	6.1e-112	414.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene058298.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058298.t1	MTR_4g102720	69.591	171	19	1	1	171	1	138	1.16e-77	241
MS.gene058298.t1	MTR_7g074790	42.529	174	81	3	3	175	6	161	1.42e-36	134
MS.gene058298.t1	MTR_0402s0040	42.353	170	94	3	7	173	26	194	5.29e-34	133
MS.gene058298.t1	MTR_7g061980	45.133	113	61	1	4	115	7	119	8.45e-27	104
MS.gene058298.t1	MTR_5g015480	44.697	132	69	3	7	135	56	186	4.25e-26	107
MS.gene058298.t1	MTR_5g039760	34.884	172	86	3	4	173	7	154	1.99e-23	97.4
MS.gene058298.t1	MTR_2g070590	44.660	103	54	2	7	106	17	119	1.91e-21	89.7
MS.gene058298.t1	MTR_6g017200	45.833	96	49	2	7	99	58	153	7.76e-20	86.3
MS.gene058298.t1	MTR_1g057920	46.914	81	42	1	7	86	34	114	9.65e-18	79.3
MS.gene058298.t1	MTR_2g099430	48.276	87	44	1	30	115	26	112	2.65e-17	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058298.t1	AT4G38180	36.571	175	106	3	4	173	70	244	8.14e-23	102
MS.gene058298.t1	AT2G43280	32.692	156	96	6	7	155	22	175	1.50e-12	67.0

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Find 77 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGAACATTAAGAATA+TGG	0.247737	2.2:+55955540	MS.gene058298:CDS
AAATTTCACAATGATTATGG+CGG	0.642799	2.2:+55955355	MS.gene058298:CDS
AAGAACAATTTGAAGAAGAA+TGG	0.434308	2.2:+55956349	MS.gene058298:CDS
AAGTTGAACATTAAGAATAT+GGG	0.540265	2.2:+55955541	MS.gene058298:CDS
AAGTTGCTAATGAATTGAAT+AGG	0.479746	2.2:+55957152	MS.gene058298:CDS
AATGACACTCTAAATCAATT+TGG	0.318679	2.2:+55957767	MS.gene058298:CDS
AATGATTATGGCGGAAGAGT+TGG	0.449309	2.2:+55955364	MS.gene058298:CDS
ACAACATTGAACAACTCATA+AGG	0.506288	2.2:+55957931	MS.gene058298:CDS
ACAAGACCATGTCCAATATG+AGG	0.537248	2.2:+55957494	MS.gene058298:CDS
ACCATTGTATAACTCATATT+GGG	0.352366	2.2:-55957625	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCCAATATGAGTTATACAA+TGG	+	chr2.2:55957624-55957643	MS.gene058298:CDS	30.0%
AGAACAAACAAACATGTAAG+AGG	-	chr2.2:55955440-55955459	None:intergenic	30.0%
AGGAGAAGGAAAAAAATAGT+TGG	+	chr2.2:55956406-55956425	MS.gene058298:intron	30.0%
AGTGAGAGTTTATCTAATGT+TGG	+	chr2.2:55957004-55957023	MS.gene058298:CDS	30.0%
ATTCATTAGCAACTTTGCAA+AGG	-	chr2.2:55957147-55957166	None:intergenic	30.0%
CAACATTGTATACCTCATAT+TGG	-	chr2.2:55957509-55957528	None:intergenic	30.0%
CCCAAAAACAAGAAAAATGA+TGG	+	chr2.2:55957349-55957368	MS.gene058298:CDS	30.0%
GAATATGAGTTCTTTAGTCT+CGG	-	chr2.2:55956662-55956681	None:intergenic	30.0%
GAATATGGGTGGAAAATTTA+TGG	+	chr2.2:55955555-55955574	MS.gene058298:CDS	30.0%
GCAAAGAATGTACTCTATAA+AGG	+	chr2.2:55956431-55956450	MS.gene058298:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	55955295	55957951	55955295	ID=MS.gene058298
chr2.2	mRNA	55955295	55957951	55955295	ID=MS.gene058298.t1;Parent=MS.gene058298
chr2.2	exon	55955295	55955814	55955295	ID=MS.gene058298.t1.exon1;Parent=MS.gene058298.t1
chr2.2	CDS	55955295	55955814	55955295	ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2	exon	55956295	55956388	55956295	ID=MS.gene058298.t1.exon2;Parent=MS.gene058298.t1
chr2.2	CDS	55956295	55956388	55956295	ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2	exon	55956955	55957393	55956955	ID=MS.gene058298.t1.exon3;Parent=MS.gene058298.t1
chr2.2	CDS	55956955	55957393	55956955	ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2	exon	55957477	55957683	55957477	ID=MS.gene058298.t1.exon4;Parent=MS.gene058298.t1
chr2.2	CDS	55957477	55957683	55957477	ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2	exon	55957761	55957817	55957761	ID=MS.gene058298.t1.exon5;Parent=MS.gene058298.t1
chr2.2	CDS	55957761	55957817	55957761	ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2	exon	55957919	55957951	55957919	ID=MS.gene058298.t1.exon6;Parent=MS.gene058298.t1
chr2.2	CDS	55957919	55957951	55957919	ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1

Gene Sequence

>MS.gene058298

ATGGAAGAAGATTGGAAACCAAAGTTGGAAATGATTTTTGATAGCGTTGAAGATGCTTGGAAATTTCACAATGATTATGGCGGAAGAGTTGGATTTGGGGTGCGGAAACAATATTCACACAAGAACAAAAATGGTATAATTACCTCTTACATGTTTGTTTGTTCTAAAGAAGGTCTGCGAAAATCGGATAAACGGGATTATAAAACCATCAATCCGAGACAAGAGACTAGGACAAATTGTAAAGCAAAGTTGAACATTAAGAATATGGGTGGAAAATTTATGGTGGTTGATTTTGTGGAGGAACATAACCATGATTTACATACACGAGAAACAACTGATATGTTGCCATCTCAAAGAAAAATCTCTCAAATTCAATGTCAGCAAATTGATTTAGCTGATGATGCTGGACTACAACAGAGAAAGTCATTTGACTTAATGAGCAAAGCAGTGGGAGGTAGTACTAACTTGGGATTTACTCGTGTTGATCAAAAGAATTATCTCCGGAAGAAAAGGGAGAGGGGTATGGTAGGTGGGGAAGTCGGTTATCTGTTGCAATACTTTCAGAAAAAATTGGTGGAAAATCCAACTTTCTATCATGCATATCAAATGGATACTGAAGACCAAATCACCAATGTGTTTTGGGCAGATGCAGGTATGCTCATTGATTATGAGTGTTTTGGTGATGTGATTTCTCTTGATTCAACATATTGCACAAATAGTTCACATAGACCACTTGCAGTGTTCTCGGGATTTAACCACCATCGAGGAGCAGTGATTTTTGGGGCTGCATTGTTGTATGACGAAACATCTGAGACATACAGATGGCTCTTTGAGACATTTTTAGAGGCTCATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGATCAATCAATGGCGAACGCATTGGTTGAGGTTATGCCTGGAGTTTACCATGGCTTATGCACATGGCACTTGATGCAGAATGGCATCAAACACTTAGGAAATTTAATGAAAGGTGGGTCATGTTTTCTTAGTGACTTTAAGAAGTGCATGTATGGCTATGAAAATGAAGAACAATTTGAAGAAGAATGGAGAACTCTCCTTGTGAAGTATGGGGAAATGGAAAAGGAGAAGGAAAAAAATAGTTGGCTGCAAAGAATGTACTCTATAAAGGAGAAATGGGCATCATGTTACATGAAGAAAGCTTTTACATTAGGCATGCGAAGTACTCAACTAAGTGAAAGTGTGAATGCAGATATTAAAAGTTTTATCAATGTGTCAAGTTGAATATTATCAAATTCTTTAAGCGCTTTGAGGATGTGGTACAACAAAAGCGAAAAAACGAATTGAAGTGTGAATATGAAGCACGCCAAAAGATTCCGAGACTAAAGAACTCATATTCACATATCTTGCAGCAAGTGTCTAAGCTTTACACTCCCACTATTTTTGATCAATTCCAACATGAGTATGAGTTGTTTGAAGCATATTTTGTGAAAAACATTAACACACAAGCAACCTTAATTGATTGTGTTATTTCTAGGGAGAGTGATTTGCAAGAGTGGAGAGTGTCATACGATTTGGATAATAATTCCATTTCCTGCTCCTGTCGTAAGTTTGAGAGTTTTGGCATACTTTGTTGTCACTGTTTACGATTATTTATTCATATGAATGTCAGATCAGTTCCAGAGCAATATATCTTAAAAAGGTGGACAAAGTTAGCAAGAAGTGAGAGTTTATCTAATGTTGGTGTTAGTAATGTGGTAGAAGATGTTGATCTATCCCCAGTGCAACGCTACAATGAGATTTGCCCCCACCTTATTAGGATAGCTGCTGAAGCATGTAGAAATCCAGAAACATTCACTCTCCTTTGCAAAGTTGCTAATGAATTGAATAGGCACTTGGTGGAATTTCAACACAATCCAACAAGTATTTGCAAAGTGAATGAGTTTGTTGCTAAAGTTAAAGAGATTGGAAGTAGCAGTGATGGTTCGTCAAAAGCAAAAGGCTTCAAAAAAAAAGAAGGCACAAGACGTACAAAGCGTTTTAAAAGTTGTTTGGAGCGCGAACTTCCCAAAAACAAGAAAAATGATGGCTCGAAAGCTTCAAAAGTTCAGGTAGTTTTAAATTACTGAATATGCATATTGTCTTTTTTCCAACTACATGTAGTATTAAATTTTTCTTCTTGTATGGCATGTAGAACTCTAAAAAGCATACACAAGACCATGTCCAATATGAGGTATACAATGTTGCATACAATGATGACATAGGTGATTCACAAAGGCAAGTCCAATATGAGTTATACAATGTTGCATACAATGGTGACAGAGGTGATTCACAAAGTCAAACCCAATATGAGTTATACAATGGTACATACAATGGTGATTCACAAAGCCAGGTCAATGTGGTAAGCCAATAACAGTATGAGTATGTGAATGTACAAAAAATAAATTTAGTGATTAAATGATTTTATCTTTTATGCAGGATAATAATGACACTCTAAATCAATTTGGTGTTACTAGTTTTACTCGACTATTGATGGTAAGTTTTAGCAACTATATAATTTCCAATTTCTAATGACGTGATTTATCTTAATATCTACATTTAAATTAAATTATTAACTTATGTCTCTGCAATTGTAGGAGGAGGATGTCACAACATTGAACAACTCATAA

Protein sequence

>MS.gene058298.t1

MEEDWKPKLEMIFDSVEDAWKFHNDYGGRVGFGVRKQYSHKNKNGIITSYMFVCSKEGLRKSDKRDYKTINPRQETRTNCKAKLNIKNMGGKFMVVDFVEEHNHDLHTRETTDMLPSQRKISQIQCQQIDLADDAGLQQRKSFDLMSKAVGGSTNLGFTRVDQKNYLRKKRERGGSCFLSDFKKCMYGYENEEQFEEEWRTLLVKSVPEQYILKRWTKLARSESLSNVGVSNVVEDVDLSPVQRYNEICPHLIRIAAEACRNPETFTLLCKVANELNRHLVEFQHNPTSICKVNEFVAKVKEIGSSSDGSSKAKGFKKKEGTRRTKRFKSCLERELPKNKKNDGSKASKVQNSKKHTQDHVQYEVYNVAYNDDIGDSQRQVQYELYNVAYNGDRGDSQSQTQYELYNGTYNGDSQSQVNVDNNDTLNQFGVTSFTRLLMEEDVTTLNNS