AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058298

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058298.t1 MTR_4g102720 69.591 171 19 1 1 171 1 138 1.16e-77 241
MS.gene058298.t1 MTR_7g074790 42.529 174 81 3 3 175 6 161 1.42e-36 134
MS.gene058298.t1 MTR_0402s0040 42.353 170 94 3 7 173 26 194 5.29e-34 133
MS.gene058298.t1 MTR_7g061980 45.133 113 61 1 4 115 7 119 8.45e-27 104
MS.gene058298.t1 MTR_5g015480 44.697 132 69 3 7 135 56 186 4.25e-26 107
MS.gene058298.t1 MTR_5g039760 34.884 172 86 3 4 173 7 154 1.99e-23 97.4
MS.gene058298.t1 MTR_2g070590 44.660 103 54 2 7 106 17 119 1.91e-21 89.7
MS.gene058298.t1 MTR_6g017200 45.833 96 49 2 7 99 58 153 7.76e-20 86.3
MS.gene058298.t1 MTR_1g057920 46.914 81 42 1 7 86 34 114 9.65e-18 79.3
MS.gene058298.t1 MTR_2g099430 48.276 87 44 1 30 115 26 112 2.65e-17 78.2
MS.gene058298.t1 MTR_1g083640 27.979 193 115 5 2 173 49 238 4.06e-16 79.0
MS.gene058298.t1 MTR_0558s0020 26.943 193 117 5 2 173 34 223 2.81e-15 76.6
MS.gene058298.t1 MTR_2g014100 27.461 193 116 6 2 173 42 231 2.82e-15 75.9
MS.gene058298.t1 MTR_4g067290 29.341 167 108 6 6 164 55 219 4.14e-15 75.1
MS.gene058298.t1 MTR_7g113010 38.095 126 63 2 7 130 457 569 5.83e-15 77.4
MS.gene058298.t1 MTR_4g067290 29.341 167 108 6 6 164 75 239 9.49e-15 74.3
MS.gene058298.t1 MTR_4g067290 29.341 167 108 6 6 164 115 279 1.71e-14 74.3
MS.gene058298.t1 MTR_4g067290 28.916 166 108 7 6 164 55 217 5.05e-14 72.0
MS.gene058298.t1 MTR_1g070355 29.091 165 109 3 13 171 80 242 5.95e-14 74.3
MS.gene058298.t1 MTR_4g067290 27.879 165 111 5 6 164 73 235 1.07e-13 71.2
MS.gene058298.t1 MTR_4g067290 27.879 165 111 5 6 164 75 237 1.09e-13 71.2
MS.gene058298.t1 MTR_1g013060 29.070 172 115 3 2 166 19 190 2.59e-12 66.6
MS.gene058298.t1 MTR_5g076070 29.299 157 107 2 13 165 59 215 3.73e-12 67.0
MS.gene058298.t1 MTR_6g051425 28.108 185 115 7 6 175 13 194 6.75e-12 67.0
MS.gene058298.t1 MTR_0137s0040 50.000 56 27 1 4 58 33 88 1.24e-11 62.0
MS.gene058298.t1 MTR_6g022080 28.082 146 101 2 19 160 97 242 4.22e-11 63.5
MS.gene058298.t1 MTR_7g446520 27.950 161 102 1 10 170 91 237 6.94e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058298.t1 AT4G38180 36.571 175 106 3 4 173 70 244 8.14e-23 102
MS.gene058298.t1 AT2G43280 32.692 156 96 6 7 155 22 175 1.50e-12 67.0

Find 77 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGAGAGTGAATGTTTC+TGG 0.114899 2.2:-55957127 None:intergenic
GAATATGGGTGGAAAATTTA+TGG 0.170586 2.2:+55955555 MS.gene058298:CDS
TGGAAATTTCACAATGATTA+TGG 0.214112 2.2:+55955352 MS.gene058298:CDS
ATGGCGGAAGAGTTGGATTT+GGG 0.244063 2.2:+55955371 MS.gene058298:CDS
AAAGTTGAACATTAAGAATA+TGG 0.247737 2.2:+55955540 MS.gene058298:CDS
TACCATTGTATAACTCATAT+TGG 0.265727 2.2:-55957626 None:intergenic
AGTCTCTTGTCTCGGATTGA+TGG 0.305807 2.2:-55955500 None:intergenic
TTCACTTTGCAAATACTTGT+TGG 0.315110 2.2:-55957199 None:intergenic
AATGACACTCTAAATCAATT+TGG 0.318679 2.2:+55957767 MS.gene058298:CDS
TATGGCGGAAGAGTTGGATT+TGG 0.342801 2.2:+55955370 MS.gene058298:CDS
CAACATTGTATAACTCATAT+TGG 0.344940 2.2:-55957566 None:intergenic
CAGAGCAATATATCTTAAAA+AGG 0.347668 2.2:+55956963 MS.gene058298:CDS
CTTCAGCAGCTATCCTAATA+AGG 0.348433 2.2:-55957093 None:intergenic
ACCATTGTATAACTCATATT+GGG 0.352366 2.2:-55957625 None:intergenic
TATAGAAAATGGAAGAAGAT+TGG 0.353848 2.2:+55955287 None:intergenic
GTTGCTAAAGTTAAAGAGAT+TGG 0.375112 2.2:+55957229 MS.gene058298:CDS
CTCGAAAGCTTCAAAAGTTC+AGG 0.376308 2.2:+55957372 MS.gene058298:CDS
CAACATTGTATACCTCATAT+TGG 0.381744 2.2:-55957506 None:intergenic
GTCTGCGAAAATCGGATAAA+CGG 0.388247 2.2:+55955467 MS.gene058298:CDS
ATCTCATTGTAGCGTTGCAC+TGG 0.388580 2.2:-55957061 None:intergenic
AGAATTATCTCCGGAAGAAA+AGG 0.399516 2.2:+55955785 MS.gene058298:CDS
TAAAGAAGGTCTGCGAAAAT+CGG 0.416096 2.2:+55955459 MS.gene058298:CDS
AAGAACAATTTGAAGAAGAA+TGG 0.434308 2.2:+55956349 MS.gene058298:CDS
GACTTTAAGAAGTGCATGTA+TGG 0.440808 2.2:+55956315 MS.gene058298:CDS
ATGTTTGTTTGTTCTAAAGA+AGG 0.445537 2.2:+55955445 MS.gene058298:CDS
TTGATAGCGTTGAAGATGCT+TGG 0.447091 2.2:+55955332 MS.gene058298:CDS
AATGATTATGGCGGAAGAGT+TGG 0.449309 2.2:+55955364 MS.gene058298:CDS
TTTCTCGTGTATGTAAATCA+TGG 0.453503 2.2:-55955603 None:intergenic
GAAGAGTTGGATTTGGGGTG+CGG 0.464909 2.2:+55955377 MS.gene058298:CDS
AGAACAAACAAACATGTAAG+AGG 0.465472 2.2:-55955437 None:intergenic
TCTGCGAAAATCGGATAAAC+GGG 0.470131 2.2:+55955468 MS.gene058298:CDS
AGTGAGAGTTTATCTAATGT+TGG 0.475157 2.2:+55957004 MS.gene058298:CDS
AAGTTGCTAATGAATTGAAT+AGG 0.479746 2.2:+55957152 MS.gene058298:CDS
ATTGATTTAGCTGATGATGC+TGG 0.485268 2.2:+55955679 MS.gene058298:CDS
AGTGGGAGGTAGTACTAACT+TGG 0.497157 2.2:+55955741 MS.gene058298:CDS
ACAACATTGAACAACTCATA+AGG 0.506288 2.2:+55957931 MS.gene058298:CDS
TTTGTCCTAGTCTCTTGTCT+CGG 0.517395 2.2:-55955508 None:intergenic
TCTCATTGTAGCGTTGCACT+GGG 0.520073 2.2:-55957060 None:intergenic
AGAAGATTGGAAACCAAAGT+TGG 0.520792 2.2:+55955300 MS.gene058298:CDS
CCATTTCCCCATACTTCACA+AGG 0.526096 2.2:-55956380 None:intergenic
GATGGTTCGTCAAAAGCAAA+AGG 0.526235 2.2:+55957262 MS.gene058298:CDS
CAATGGTGATTCACAAAGCC+AGG 0.528106 2.2:+55957653 MS.gene058298:CDS
TGAATTGAATAGGCACTTGG+TGG 0.531507 2.2:+55957162 MS.gene058298:CDS
ACAAGACCATGTCCAATATG+AGG 0.537248 2.2:+55957494 MS.gene058298:CDS
AAGTTGAACATTAAGAATAT+GGG 0.540265 2.2:+55955541 MS.gene058298:CDS
GACTTAATGAGCAAAGCAGT+GGG 0.545764 2.2:+55955724 MS.gene058298:CDS
GAATTATCTCCGGAAGAAAA+GGG 0.546525 2.2:+55955786 MS.gene058298:CDS
AGCAGCTATCCTAATAAGGT+GGG 0.548848 2.2:-55957089 None:intergenic
ATTCATTAGCAACTTTGCAA+AGG 0.550164 2.2:-55957144 None:intergenic
TTGATCAAAAGAATTATCTC+CGG 0.552966 2.2:+55955776 MS.gene058298:CDS
CAGCAGCTATCCTAATAAGG+TGG 0.565554 2.2:-55957090 None:intergenic
ATTGGCTTACCACATTGACC+TGG 0.566149 2.2:-55957671 None:intergenic
GAGATTGGAAGTAGCAGTGA+TGG 0.566239 2.2:+55957244 MS.gene058298:CDS
TGGCGGAAGAGTTGGATTTG+GGG 0.568293 2.2:+55955372 MS.gene058298:CDS
TTGAACATTAAGAATATGGG+TGG 0.586016 2.2:+55955544 MS.gene058298:CDS
TGACTTAATGAGCAAAGCAG+TGG 0.594388 2.2:+55955723 MS.gene058298:CDS
TAATGAATTGAATAGGCACT+TGG 0.600308 2.2:+55957159 MS.gene058298:CDS
GCAGCTATCCTAATAAGGTG+GGG 0.604473 2.2:-55957088 None:intergenic
TTATACAATGGTACATACAA+TGG 0.610770 2.2:+55957636 MS.gene058298:CDS
CAGCTATCCTAATAAGGTGG+GGG 0.615168 2.2:-55957087 None:intergenic
TCTCCGGAAGAAAAGGGAGA+GGG 0.620062 2.2:+55955792 MS.gene058298:CDS
ATCTCCGGAAGAAAAGGGAG+AGG 0.630371 2.2:+55955791 MS.gene058298:CDS
ACCCAATATGAGTTATACAA+TGG 0.639187 2.2:+55957624 MS.gene058298:CDS
AAATTTCACAATGATTATGG+CGG 0.642799 2.2:+55955355 MS.gene058298:CDS
GTTGCATACAATGATGACAT+AGG 0.643668 2.2:+55957525 MS.gene058298:CDS
TCAATCCGAGACAAGAGACT+AGG 0.643742 2.2:+55955503 MS.gene058298:CDS
CTCCGGAAGAAAAGGGAGAG+GGG 0.648734 2.2:+55955793 MS.gene058298:CDS
TAATGTTGGTGTTAGTAATG+TGG 0.650819 2.2:+55957018 MS.gene058298:CDS
TTATACAATGTTGCATACAA+TGG 0.654389 2.2:+55957576 MS.gene058298:CDS
TGTATACCTCATATTGGACA+TGG 0.659711 2.2:-55957500 None:intergenic
GTGGGAGGTAGTACTAACTT+GGG 0.667402 2.2:+55955742 MS.gene058298:CDS
ATGACATAGGTGATTCACAA+AGG 0.672123 2.2:+55957538 MS.gene058298:CDS
TATGGGTGGAAAATTTATGG+TGG 0.672265 2.2:+55955558 MS.gene058298:CDS
TTAATGAGCAAAGCAGTGGG+AGG 0.694650 2.2:+55955727 MS.gene058298:CDS
TTCACAAAGCCAGGTCAATG+TGG 0.696942 2.2:+55957662 MS.gene058298:CDS
GTTGCATACAATGGTGACAG+AGG 0.705992 2.2:+55957585 MS.gene058298:CDS
CTCATTGTAGCGTTGCACTG+GGG 0.739921 2.2:-55957059 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTTTTCTTCTTGTA+TGG + chr2.2:55957447-55957466 MS.gene058298:intron 15.0%
!! AAAGTTGAACATTAAGAATA+TGG + chr2.2:55955540-55955559 MS.gene058298:CDS 20.0%
!! AAGTTGAACATTAAGAATAT+GGG + chr2.2:55955541-55955560 MS.gene058298:CDS 20.0%
!! AATTTAATACTACATGTAGT+TGG - chr2.2:55957435-55957454 None:intergenic 20.0%
!! AGAAATAACACAATCAATTA+AGG - chr2.2:55956798-55956817 None:intergenic 20.0%
!!! AATGATTTTATCTTTTATGC+AGG + chr2.2:55957739-55957758 MS.gene058298:intron 20.0%
!!! AATTGATTGTGTTATTTCTA+GGG + chr2.2:55956799-55956818 MS.gene058298:intron 20.0%
!!! TAATTGATTGTGTTATTTCT+AGG + chr2.2:55956798-55956817 MS.gene058298:intron 20.0%
! AAAGGCTTCAAAAAAAAAGA+AGG + chr2.2:55957280-55957299 MS.gene058298:CDS 25.0%
! AAATTTCACAATGATTATGG+CGG + chr2.2:55955355-55955374 MS.gene058298:CDS 25.0%
! AAGAACAATTTGAAGAAGAA+TGG + chr2.2:55956349-55956368 MS.gene058298:CDS 25.0%
! AAGTTGCTAATGAATTGAAT+AGG + chr2.2:55957152-55957171 MS.gene058298:CDS 25.0%
! AATGACACTCTAAATCAATT+TGG + chr2.2:55957767-55957786 MS.gene058298:CDS 25.0%
! ACCATTGTATAACTCATATT+GGG - chr2.2:55957628-55957647 None:intergenic 25.0%
! AGCAATATATCTTAAAAAGG+TGG + chr2.2:55956966-55956985 MS.gene058298:CDS 25.0%
! ATACTTTCAGAAAAAATTGG+TGG + chr2.2:55955849-55955868 MS.gene058298:intron 25.0%
! CAACATTGTATAACTCATAT+TGG - chr2.2:55957569-55957588 None:intergenic 25.0%
! CACTTAGGAAATTTAATGAA+AGG + chr2.2:55956273-55956292 MS.gene058298:intron 25.0%
! CAGAGCAATATATCTTAAAA+AGG + chr2.2:55956963-55956982 MS.gene058298:CDS 25.0%
! GCAATACTTTCAGAAAAAAT+TGG + chr2.2:55955846-55955865 MS.gene058298:intron 25.0%
! TAAATCACGTCATTAGAAAT+TGG - chr2.2:55957846-55957865 None:intergenic 25.0%
! TACCATTGTATAACTCATAT+TGG - chr2.2:55957629-55957648 None:intergenic 25.0%
! TAGGAAATTTAATGAAAGGT+GGG + chr2.2:55956277-55956296 MS.gene058298:intron 25.0%
! TATTCACACAAGAACAAAAA+TGG + chr2.2:55955406-55955425 MS.gene058298:CDS 25.0%
! TCAAAAATCATTTCCAACTT+TGG - chr2.2:55955316-55955335 None:intergenic 25.0%
! TGGAAATTTCACAATGATTA+TGG + chr2.2:55955352-55955371 MS.gene058298:CDS 25.0%
! TGGAATTGATCAAAAATAGT+GGG - chr2.2:55956719-55956738 None:intergenic 25.0%
! TTAGGAAATTTAATGAAAGG+TGG + chr2.2:55956276-55956295 MS.gene058298:intron 25.0%
! TTATACAATGGTACATACAA+TGG + chr2.2:55957636-55957655 MS.gene058298:CDS 25.0%
! TTATACAATGTTGCATACAA+TGG + chr2.2:55957576-55957595 MS.gene058298:CDS 25.0%
! TTGATCAAAAGAATTATCTC+CGG + chr2.2:55955776-55955795 MS.gene058298:CDS 25.0%
! TTGGAATTGATCAAAAATAG+TGG - chr2.2:55956720-55956739 None:intergenic 25.0%
! TTTCTATCATGCATATCAAA+TGG + chr2.2:55955882-55955901 MS.gene058298:intron 25.0%
!! ATGAAGAAAGCTTTTACATT+AGG + chr2.2:55956474-55956493 MS.gene058298:intron 25.0%
!!! AAAGCGTTTTAAAAGTTGTT+TGG + chr2.2:55957315-55957334 MS.gene058298:CDS 25.0%
!!! ATGTTTGTTTGTTCTAAAGA+AGG + chr2.2:55955445-55955464 MS.gene058298:CDS 25.0%
!!! CCATCATTTTTCTTGTTTTT+GGG - chr2.2:55957352-55957371 None:intergenic 25.0%
!!! CTTTTTAAGATATATTGCTC+TGG - chr2.2:55956965-55956984 None:intergenic 25.0%
ACCCAATATGAGTTATACAA+TGG + chr2.2:55957624-55957643 MS.gene058298:CDS 30.0%
AGAACAAACAAACATGTAAG+AGG - chr2.2:55955440-55955459 None:intergenic 30.0%
AGGAGAAGGAAAAAAATAGT+TGG + chr2.2:55956406-55956425 MS.gene058298:intron 30.0%
AGTGAGAGTTTATCTAATGT+TGG + chr2.2:55957004-55957023 MS.gene058298:CDS 30.0%
ATTCATTAGCAACTTTGCAA+AGG - chr2.2:55957147-55957166 None:intergenic 30.0%
CAACATTGTATACCTCATAT+TGG - chr2.2:55957509-55957528 None:intergenic 30.0%
CCCAAAAACAAGAAAAATGA+TGG + chr2.2:55957349-55957368 MS.gene058298:CDS 30.0%
GAATATGAGTTCTTTAGTCT+CGG - chr2.2:55956662-55956681 None:intergenic 30.0%
GAATATGGGTGGAAAATTTA+TGG + chr2.2:55955555-55955574 MS.gene058298:CDS 30.0%
GCAAAGAATGTACTCTATAA+AGG + chr2.2:55956431-55956450 MS.gene058298:intron 30.0%
GTACTCTATAAAGGAGAAAT+GGG + chr2.2:55956440-55956459 MS.gene058298:intron 30.0%
GTTGCTAAAGTTAAAGAGAT+TGG + chr2.2:55957229-55957248 MS.gene058298:CDS 30.0%
TAATGAATTGAATAGGCACT+TGG + chr2.2:55957159-55957178 MS.gene058298:CDS 30.0%
TACTGATCAAGATCAATCAA+TGG + chr2.2:55956173-55956192 MS.gene058298:intron 30.0%
TCACATACTCATACTGTTAT+TGG - chr2.2:55957692-55957711 None:intergenic 30.0%
TGATATGCATGATAGAAAGT+TGG - chr2.2:55955880-55955899 None:intergenic 30.0%
TGATCAGTAAAAACTGTTTG+AGG - chr2.2:55956162-55956181 None:intergenic 30.0%
TGTACTCTATAAAGGAGAAA+TGG + chr2.2:55956439-55956458 MS.gene058298:intron 30.0%
TTCACTTTGCAAATACTTGT+TGG - chr2.2:55957202-55957221 None:intergenic 30.0%
TTGAACATTAAGAATATGGG+TGG + chr2.2:55955544-55955563 MS.gene058298:CDS 30.0%
TTTCTCGTGTATGTAAATCA+TGG - chr2.2:55955606-55955625 None:intergenic 30.0%
!! ATTTATGGTGGTTGATTTTG+TGG + chr2.2:55955570-55955589 MS.gene058298:CDS 30.0%
!! CTCATTGATTATGAGTGTTT+TGG + chr2.2:55955952-55955971 MS.gene058298:intron 30.0%
!! TAATGTTGGTGTTAGTAATG+TGG + chr2.2:55957018-55957037 MS.gene058298:CDS 30.0%
!! TAGTTTTACTCGACTATTGA+TGG + chr2.2:55957796-55957815 MS.gene058298:CDS 30.0%
!! TGAGAGATTTTTCTTTGAGA+TGG - chr2.2:55955643-55955662 None:intergenic 30.0%
!!! GCCATCATTTTTCTTGTTTT+TGG - chr2.2:55957353-55957372 None:intergenic 30.0%
AAAACTCTCAAACTTACGAC+AGG - chr2.2:55956885-55956904 None:intergenic 35.0%
ACTTATGTCTCTGCAATTGT+AGG + chr2.2:55957897-55957916 MS.gene058298:intron 35.0%
AGAAGATTGGAAACCAAAGT+TGG + chr2.2:55955300-55955319 MS.gene058298:CDS 35.0%
AGAATTATCTCCGGAAGAAA+AGG + chr2.2:55955785-55955804 MS.gene058298:CDS 35.0%
ATGACATAGGTGATTCACAA+AGG + chr2.2:55957538-55957557 MS.gene058298:CDS 35.0%
CAAACAACTCATACTCATGT+TGG - chr2.2:55956739-55956758 None:intergenic 35.0%
CAAATTCTTTAAGCGCTTTG+AGG + chr2.2:55956574-55956593 MS.gene058298:intron 35.0%
GAATTATCTCCGGAAGAAAA+GGG + chr2.2:55955786-55955805 MS.gene058298:CDS 35.0%
GTTGCATACAATGATGACAT+AGG + chr2.2:55957525-55957544 MS.gene058298:CDS 35.0%
TAAAGAAGGTCTGCGAAAAT+CGG + chr2.2:55955459-55955478 MS.gene058298:CDS 35.0%
TATGGGTGGAAAATTTATGG+TGG + chr2.2:55955558-55955577 MS.gene058298:CDS 35.0%
TGTATACCTCATATTGGACA+TGG - chr2.2:55957503-55957522 None:intergenic 35.0%
! AAACATCTGAGACATACAGA+TGG + chr2.2:55956097-55956116 MS.gene058298:intron 35.0%
! ACCAAATCACCAATGTGTTT+TGG + chr2.2:55955914-55955933 MS.gene058298:intron 35.0%
! ATTGATTTAGCTGATGATGC+TGG + chr2.2:55955679-55955698 MS.gene058298:CDS 35.0%
! CCAAATCACCAATGTGTTTT+GGG + chr2.2:55955915-55955934 MS.gene058298:intron 35.0%
! GACTTTAAGAAGTGCATGTA+TGG + chr2.2:55956315-55956334 MS.gene058298:CDS 35.0%
! TCTTTAGTCTCGGAATCTTT+TGG - chr2.2:55956652-55956671 None:intergenic 35.0%
! TGTCGTAAGTTTGAGAGTTT+TGG + chr2.2:55956884-55956903 MS.gene058298:intron 35.0%
!!! GCTCTTTGAGACATTTTTAG+AGG + chr2.2:55956119-55956138 MS.gene058298:intron 35.0%
AACTCTCCTTGTGAAGTATG+GGG + chr2.2:55956374-55956393 MS.gene058298:intron 40.0%
ACAAGACCATGTCCAATATG+AGG + chr2.2:55957494-55957513 MS.gene058298:CDS 40.0%
AGAACTCTCCTTGTGAAGTA+TGG + chr2.2:55956372-55956391 MS.gene058298:intron 40.0%
AGCAGCTATCCTAATAAGGT+GGG - chr2.2:55957092-55957111 None:intergenic 40.0%
CAAAGGAGAGTGAATGTTTC+TGG - chr2.2:55957130-55957149 None:intergenic 40.0%
CAGAATGGCATCAAACACTT+AGG + chr2.2:55956258-55956277 MS.gene058298:intron 40.0%
CTCGAAAGCTTCAAAAGTTC+AGG + chr2.2:55957372-55957391 MS.gene058298:CDS 40.0%
CTTCAGCAGCTATCCTAATA+AGG - chr2.2:55957096-55957115 None:intergenic 40.0%
GAACTCTCCTTGTGAAGTAT+GGG + chr2.2:55956373-55956392 MS.gene058298:intron 40.0%
GAAGTATGGGGAAATGGAAA+AGG + chr2.2:55956386-55956405 MS.gene058298:intron 40.0%
GACTTAATGAGCAAAGCAGT+GGG + chr2.2:55955724-55955743 MS.gene058298:CDS 40.0%
GATGGTTCGTCAAAAGCAAA+AGG + chr2.2:55957262-55957281 MS.gene058298:CDS 40.0%
GTCTGCGAAAATCGGATAAA+CGG + chr2.2:55955467-55955486 MS.gene058298:CDS 40.0%
TATGTCTCTGCAATTGTAGG+AGG + chr2.2:55957900-55957919 MS.gene058298:intron 40.0%
TCTGCGAAAATCGGATAAAC+GGG + chr2.2:55955468-55955487 MS.gene058298:CDS 40.0%
TGAATTGAATAGGCACTTGG+TGG + chr2.2:55957162-55957181 MS.gene058298:CDS 40.0%
TGACTTAATGAGCAAAGCAG+TGG + chr2.2:55955723-55955742 MS.gene058298:CDS 40.0%
TTTACCATGGCTTATGCACA+TGG + chr2.2:55956226-55956245 MS.gene058298:intron 40.0%
TTTGTCCTAGTCTCTTGTCT+CGG - chr2.2:55955511-55955530 None:intergenic 40.0%
! AATGATTATGGCGGAAGAGT+TGG + chr2.2:55955364-55955383 MS.gene058298:CDS 40.0%
! ATCGAGGAGCAGTGATTTTT+GGG + chr2.2:55956055-55956074 MS.gene058298:intron 40.0%
! CCCAAAACACATTGGTGATT+TGG - chr2.2:55955918-55955937 None:intergenic 40.0%
!! TATGGTGGTTGATTTTGTGG+AGG + chr2.2:55955573-55955592 MS.gene058298:CDS 40.0%
!! TTGATAGCGTTGAAGATGCT+TGG + chr2.2:55955332-55955351 MS.gene058298:CDS 40.0%
ACATGGCACTTGATGCAGAA+TGG + chr2.2:55956243-55956262 MS.gene058298:intron 45.0%
AGATTTGCCCCCACCTTATT+AGG + chr2.2:55957080-55957099 MS.gene058298:CDS 45.0%
AGTCTCTTGTCTCGGATTGA+TGG - chr2.2:55955503-55955522 None:intergenic 45.0%
AGTGGGAGGTAGTACTAACT+TGG + chr2.2:55955741-55955760 MS.gene058298:CDS 45.0%
ATCTCATTGTAGCGTTGCAC+TGG - chr2.2:55957064-55957083 None:intergenic 45.0%
CAAAAATCACTGCTCCTCGA+TGG - chr2.2:55956056-55956075 None:intergenic 45.0%
CAATGGTGATTCACAAAGCC+AGG + chr2.2:55957653-55957672 MS.gene058298:CDS 45.0%
CAGCAGCTATCCTAATAAGG+TGG - chr2.2:55957093-55957112 None:intergenic 45.0%
CAGCTATCCTAATAAGGTGG+GGG - chr2.2:55957090-55957109 None:intergenic 45.0%
CATAAGCCATGGTAAACTCC+AGG - chr2.2:55956222-55956241 None:intergenic 45.0%
CCATTTCCCCATACTTCACA+AGG - chr2.2:55956383-55956402 None:intergenic 45.0%
CCTTGTGAAGTATGGGGAAA+TGG + chr2.2:55956380-55956399 MS.gene058298:intron 45.0%
GAGATTGGAAGTAGCAGTGA+TGG + chr2.2:55957244-55957263 MS.gene058298:CDS 45.0%
GCAGCTATCCTAATAAGGTG+GGG - chr2.2:55957091-55957110 None:intergenic 45.0%
GTGGGAGGTAGTACTAACTT+GGG + chr2.2:55955742-55955761 MS.gene058298:CDS 45.0%
GTTATGCCTGGAGTTTACCA+TGG + chr2.2:55956213-55956232 MS.gene058298:intron 45.0%
GTTGCATACAATGGTGACAG+AGG + chr2.2:55957585-55957604 MS.gene058298:CDS 45.0%
TAGACCACTTGCAGTGTTCT+CGG + chr2.2:55956020-55956039 MS.gene058298:intron 45.0%
TCAATCAATGGCGAACGCAT+TGG + chr2.2:55956185-55956204 MS.gene058298:intron 45.0%
TCAATCCGAGACAAGAGACT+AGG + chr2.2:55955503-55955522 MS.gene058298:CDS 45.0%
TCTCATTGTAGCGTTGCACT+GGG - chr2.2:55957063-55957082 None:intergenic 45.0%
TGCATCTGCCCAAAACACAT+TGG - chr2.2:55955926-55955945 None:intergenic 45.0%
TGGGGAAATGGAAAAGGAGA+AGG + chr2.2:55956392-55956411 MS.gene058298:intron 45.0%
TTAATGAGCAAAGCAGTGGG+AGG + chr2.2:55955727-55955746 MS.gene058298:CDS 45.0%
TTCACAAAGCCAGGTCAATG+TGG + chr2.2:55957662-55957681 MS.gene058298:CDS 45.0%
! ATGGCGGAAGAGTTGGATTT+GGG + chr2.2:55955371-55955390 MS.gene058298:CDS 45.0%
! ATTGGCTTACCACATTGACC+TGG - chr2.2:55957674-55957693 None:intergenic 45.0%
! CATCGAGGAGCAGTGATTTT+TGG + chr2.2:55956054-55956073 MS.gene058298:intron 45.0%
! TATGGCGGAAGAGTTGGATT+TGG + chr2.2:55955370-55955389 MS.gene058298:CDS 45.0%
! TCGAGGAGCAGTGATTTTTG+GGG + chr2.2:55956056-55956075 MS.gene058298:intron 45.0%
!! AATGTGTTTTGGGCAGATGC+AGG + chr2.2:55955925-55955944 MS.gene058298:intron 45.0%
!! CTTTAAGCGCTTTGAGGATG+TGG + chr2.2:55956580-55956599 MS.gene058298:intron 45.0%
!! GTGGAGAGTGTCATACGATT+TGG + chr2.2:55956838-55956857 MS.gene058298:intron 45.0%
AAATCACTGCTCCTCGATGG+TGG - chr2.2:55956053-55956072 None:intergenic 50.0%
AATCCCGAGAACACTGCAAG+TGG - chr2.2:55956027-55956046 None:intergenic 50.0%
AGACCACTTGCAGTGTTCTC+GGG + chr2.2:55956021-55956040 MS.gene058298:intron 50.0%
AGTGCCATGTGCATAAGCCA+TGG - chr2.2:55956233-55956252 None:intergenic 50.0%
ATCTCCGGAAGAAAAGGGAG+AGG + chr2.2:55955791-55955810 MS.gene058298:CDS 50.0%
CTCAAACTTACGACAGGAGC+AGG - chr2.2:55956879-55956898 None:intergenic 50.0%
CTCATTGTAGCGTTGCACTG+GGG - chr2.2:55957062-55957081 None:intergenic 50.0%
CTTACGACAGGAGCAGGAAA+TGG - chr2.2:55956873-55956892 None:intergenic 50.0%
GAAGAAAAGGGAGAGGGGTA+TGG + chr2.2:55955798-55955817 MS.gene058298:intron 50.0%
GTCTCTGCAATTGTAGGAGG+AGG + chr2.2:55957903-55957922 MS.gene058298:intron 50.0%
TCGGGATTTAACCACCATCG+AGG + chr2.2:55956039-55956058 MS.gene058298:intron 50.0%
TCTCCGGAAGAAAAGGGAGA+GGG + chr2.2:55955792-55955811 MS.gene058298:CDS 50.0%
TGGCGGAAGAGTTGGATTTG+GGG + chr2.2:55955372-55955391 MS.gene058298:CDS 50.0%
! AAAAGGGAGAGGGGTATGGT+AGG + chr2.2:55955802-55955821 MS.gene058298:intron 50.0%
! GAAGAGTTGGATTTGGGGTG+CGG + chr2.2:55955377-55955396 MS.gene058298:CDS 50.0%
! GGGAGAGTGATTTGCAAGAG+TGG + chr2.2:55956819-55956838 MS.gene058298:intron 50.0%
! TACCCCTCTCCCTTTTCTTC+CGG - chr2.2:55955798-55955817 None:intergenic 50.0%
!! AATGGCGAACGCATTGGTTG+AGG + chr2.2:55956191-55956210 MS.gene058298:intron 50.0%
!! GCATTGGTTGAGGTTATGCC+TGG + chr2.2:55956201-55956220 MS.gene058298:intron 50.0%
CTCCGGAAGAAAAGGGAGAG+GGG + chr2.2:55955793-55955812 MS.gene058298:CDS 55.0%
GGTATGGTAGGTGGGGAAGT+CGG + chr2.2:55955814-55955833 MS.gene058298:intron 55.0%
! AGGGAGAGGGGTATGGTAGG+TGG + chr2.2:55955805-55955824 MS.gene058298:intron 60.0%
! GGAGAGGGGTATGGTAGGTG+GGG + chr2.2:55955807-55955826 MS.gene058298:intron 60.0%
! GGGAGAGGGGTATGGTAGGT+GGG + chr2.2:55955806-55955825 MS.gene058298:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 55955295 55957951 55955295 ID=MS.gene058298
chr2.2 mRNA 55955295 55957951 55955295 ID=MS.gene058298.t1;Parent=MS.gene058298
chr2.2 exon 55955295 55955814 55955295 ID=MS.gene058298.t1.exon1;Parent=MS.gene058298.t1
chr2.2 CDS 55955295 55955814 55955295 ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2 exon 55956295 55956388 55956295 ID=MS.gene058298.t1.exon2;Parent=MS.gene058298.t1
chr2.2 CDS 55956295 55956388 55956295 ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2 exon 55956955 55957393 55956955 ID=MS.gene058298.t1.exon3;Parent=MS.gene058298.t1
chr2.2 CDS 55956955 55957393 55956955 ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2 exon 55957477 55957683 55957477 ID=MS.gene058298.t1.exon4;Parent=MS.gene058298.t1
chr2.2 CDS 55957477 55957683 55957477 ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2 exon 55957761 55957817 55957761 ID=MS.gene058298.t1.exon5;Parent=MS.gene058298.t1
chr2.2 CDS 55957761 55957817 55957761 ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
chr2.2 exon 55957919 55957951 55957919 ID=MS.gene058298.t1.exon6;Parent=MS.gene058298.t1
chr2.2 CDS 55957919 55957951 55957919 ID=cds.MS.gene058298.t1;Parent=MS.gene058298.t1
Gene Sequence

>MS.gene058298

ATGGAAGAAGATTGGAAACCAAAGTTGGAAATGATTTTTGATAGCGTTGAAGATGCTTGGAAATTTCACAATGATTATGGCGGAAGAGTTGGATTTGGGGTGCGGAAACAATATTCACACAAGAACAAAAATGGTATAATTACCTCTTACATGTTTGTTTGTTCTAAAGAAGGTCTGCGAAAATCGGATAAACGGGATTATAAAACCATCAATCCGAGACAAGAGACTAGGACAAATTGTAAAGCAAAGTTGAACATTAAGAATATGGGTGGAAAATTTATGGTGGTTGATTTTGTGGAGGAACATAACCATGATTTACATACACGAGAAACAACTGATATGTTGCCATCTCAAAGAAAAATCTCTCAAATTCAATGTCAGCAAATTGATTTAGCTGATGATGCTGGACTACAACAGAGAAAGTCATTTGACTTAATGAGCAAAGCAGTGGGAGGTAGTACTAACTTGGGATTTACTCGTGTTGATCAAAAGAATTATCTCCGGAAGAAAAGGGAGAGGGGTATGGTAGGTGGGGAAGTCGGTTATCTGTTGCAATACTTTCAGAAAAAATTGGTGGAAAATCCAACTTTCTATCATGCATATCAAATGGATACTGAAGACCAAATCACCAATGTGTTTTGGGCAGATGCAGGTATGCTCATTGATTATGAGTGTTTTGGTGATGTGATTTCTCTTGATTCAACATATTGCACAAATAGTTCACATAGACCACTTGCAGTGTTCTCGGGATTTAACCACCATCGAGGAGCAGTGATTTTTGGGGCTGCATTGTTGTATGACGAAACATCTGAGACATACAGATGGCTCTTTGAGACATTTTTAGAGGCTCATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGATCAATCAATGGCGAACGCATTGGTTGAGGTTATGCCTGGAGTTTACCATGGCTTATGCACATGGCACTTGATGCAGAATGGCATCAAACACTTAGGAAATTTAATGAAAGGTGGGTCATGTTTTCTTAGTGACTTTAAGAAGTGCATGTATGGCTATGAAAATGAAGAACAATTTGAAGAAGAATGGAGAACTCTCCTTGTGAAGTATGGGGAAATGGAAAAGGAGAAGGAAAAAAATAGTTGGCTGCAAAGAATGTACTCTATAAAGGAGAAATGGGCATCATGTTACATGAAGAAAGCTTTTACATTAGGCATGCGAAGTACTCAACTAAGTGAAAGTGTGAATGCAGATATTAAAAGTTTTATCAATGTGTCAAGTTGAATATTATCAAATTCTTTAAGCGCTTTGAGGATGTGGTACAACAAAAGCGAAAAAACGAATTGAAGTGTGAATATGAAGCACGCCAAAAGATTCCGAGACTAAAGAACTCATATTCACATATCTTGCAGCAAGTGTCTAAGCTTTACACTCCCACTATTTTTGATCAATTCCAACATGAGTATGAGTTGTTTGAAGCATATTTTGTGAAAAACATTAACACACAAGCAACCTTAATTGATTGTGTTATTTCTAGGGAGAGTGATTTGCAAGAGTGGAGAGTGTCATACGATTTGGATAATAATTCCATTTCCTGCTCCTGTCGTAAGTTTGAGAGTTTTGGCATACTTTGTTGTCACTGTTTACGATTATTTATTCATATGAATGTCAGATCAGTTCCAGAGCAATATATCTTAAAAAGGTGGACAAAGTTAGCAAGAAGTGAGAGTTTATCTAATGTTGGTGTTAGTAATGTGGTAGAAGATGTTGATCTATCCCCAGTGCAACGCTACAATGAGATTTGCCCCCACCTTATTAGGATAGCTGCTGAAGCATGTAGAAATCCAGAAACATTCACTCTCCTTTGCAAAGTTGCTAATGAATTGAATAGGCACTTGGTGGAATTTCAACACAATCCAACAAGTATTTGCAAAGTGAATGAGTTTGTTGCTAAAGTTAAAGAGATTGGAAGTAGCAGTGATGGTTCGTCAAAAGCAAAAGGCTTCAAAAAAAAAGAAGGCACAAGACGTACAAAGCGTTTTAAAAGTTGTTTGGAGCGCGAACTTCCCAAAAACAAGAAAAATGATGGCTCGAAAGCTTCAAAAGTTCAGGTAGTTTTAAATTACTGAATATGCATATTGTCTTTTTTCCAACTACATGTAGTATTAAATTTTTCTTCTTGTATGGCATGTAGAACTCTAAAAAGCATACACAAGACCATGTCCAATATGAGGTATACAATGTTGCATACAATGATGACATAGGTGATTCACAAAGGCAAGTCCAATATGAGTTATACAATGTTGCATACAATGGTGACAGAGGTGATTCACAAAGTCAAACCCAATATGAGTTATACAATGGTACATACAATGGTGATTCACAAAGCCAGGTCAATGTGGTAAGCCAATAACAGTATGAGTATGTGAATGTACAAAAAATAAATTTAGTGATTAAATGATTTTATCTTTTATGCAGGATAATAATGACACTCTAAATCAATTTGGTGTTACTAGTTTTACTCGACTATTGATGGTAAGTTTTAGCAACTATATAATTTCCAATTTCTAATGACGTGATTTATCTTAATATCTACATTTAAATTAAATTATTAACTTATGTCTCTGCAATTGTAGGAGGAGGATGTCACAACATTGAACAACTCATAA
Protein sequence

>MS.gene058298.t1

MEEDWKPKLEMIFDSVEDAWKFHNDYGGRVGFGVRKQYSHKNKNGIITSYMFVCSKEGLRKSDKRDYKTINPRQETRTNCKAKLNIKNMGGKFMVVDFVEEHNHDLHTRETTDMLPSQRKISQIQCQQIDLADDAGLQQRKSFDLMSKAVGGSTNLGFTRVDQKNYLRKKRERGGSCFLSDFKKCMYGYENEEQFEEEWRTLLVKSVPEQYILKRWTKLARSESLSNVGVSNVVEDVDLSPVQRYNEICPHLIRIAAEACRNPETFTLLCKVANELNRHLVEFQHNPTSICKVNEFVAKVKEIGSSSDGSSKAKGFKKKEGTRRTKRFKSCLERELPKNKKNDGSKASKVQNSKKHTQDHVQYEVYNVAYNDDIGDSQRQVQYELYNVAYNGDRGDSQSQTQYELYNGTYNGDSQSQVNVDNNDTLNQFGVTSFTRLLMEEDVTTLNNS