AlfalfaGEDB | MS.gene058393

M. sativa cultivar XinJiangDaYe / MS.gene058393

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058393.t1	XP_013459206.1	79.6	269	49	1	1	263	1	269	6.30E-99	370.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058393.t1	Q9M202	26.0	269	149	10	8	254	6	246	1.4e-09	65.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058393.t1	A0A072V3Z9	79.6	269	49	1	1	263	1	269	4.5e-99	370.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene058393.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058393.t1	MTR_3g408380	91.078	269	18	1	1	263	1	269	0.0	505
MS.gene058393.t1	MTR_3g008310	84.000	275	32	1	1	263	1	275	1.02e-169	469
MS.gene058393.t1	MTR_3g408420	64.493	276	84	3	1	263	1	275	7.92e-114	328
MS.gene058393.t1	MTR_0160s0030	26.797	306	164	10	8	255	6	309	8.79e-14	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058393.t1	AT3G60580	26.766	269	147	10	8	254	6	246	1.59e-13	69.3
MS.gene058393.t1	AT1G02030	26.482	253	152	8	8	254	7	231	1.58e-12	66.2

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Find 43 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGAGGATTGTTTGG+TGG	0.514150	3.2:-2811326	None:intergenic
AAATGTACCCCGTCAAACTT+TGG	0.446972	3.2:+2811362	MS.gene058393:CDS
AACAATCTAGCAGGAGAGAT+TGG	0.456742	3.2:+2811740	MS.gene058393:CDS
AAGATTGAGGATTGTTTGGT+GGG	0.486813	3.2:-2811325	None:intergenic
AATTTCACTTTCAAAGATTG+AGG	0.444853	3.2:-2811338	None:intergenic
ACAAATATCACACTCAAACA+CGG	0.640237	3.2:-2811657	None:intergenic
ACAATCAGCGTATAGCGATT+TGG	0.398813	3.2:+2811529	MS.gene058393:CDS
ACCTGAATACTCAGCTGAGT+TGG	0.539000	3.2:+2811241	MS.gene058393:CDS
AGAGAATATAGAATTTAACA+TGG	0.705093	3.2:+2811478	MS.gene058393:CDS
AGGAAAACTAACAATCTAGC+AGG	0.531732	3.2:+2811731	MS.gene058393:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAATATCACACTCAAACA+CGG	-	chr3.2:2811660-2811679	None:intergenic	30.0%
CTTCTTGGATTAACAATTGA+TGG	-	chr3.2:2811302-2811321	None:intergenic	30.0%
GAATGAATGGAAACAAATTG+AGG	+	chr3.2:2811589-2811608	MS.gene058393:CDS	30.0%
TTCAAAGATTGAGGATTGTT+TGG	-	chr3.2:2811332-2811351	None:intergenic	30.0%
AAAGATTGAGGATTGTTTGG+TGG	-	chr3.2:2811329-2811348	None:intergenic	35.0%
AAGATTGAGGATTGTTTGGT+GGG	-	chr3.2:2811328-2811347	None:intergenic	35.0%
AGGAAAACTAACAATCTAGC+AGG	+	chr3.2:2811731-2811750	MS.gene058393:CDS	35.0%
CAAACCAAGACAGTTTCATA+TGG	+	chr3.2:2811442-2811461	MS.gene058393:CDS	35.0%
CTATTCCTACCAAAGTTTGA+CGG	-	chr3.2:2811374-2811393	None:intergenic	35.0%
TATTCCTACCAAAGTTTGAC+GGG	-	chr3.2:2811373-2811392	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	2811110	2811901	2811110	ID=MS.gene058393
chr3.2	mRNA	2811110	2811901	2811110	ID=MS.gene058393.t1;Parent=MS.gene058393
chr3.2	exon	2811110	2811901	2811110	ID=MS.gene058393.t1.exon1;Parent=MS.gene058393.t1
chr3.2	CDS	2811110	2811901	2811110	ID=cds.MS.gene058393.t1;Parent=MS.gene058393.t1

Gene Sequence

>MS.gene058393

ATGGAGAACAATGGTAGAGTGTGTCTCATTTGTAACAGGTCATTTTCCAATGGAAAAGCTTTGGGAGGACATATGAAATCCCACTATGCCAAACTACCAATCCATCCAAAACCCCCAATCAACAACCAAGTACCTGAATACTCAGCTGAGTTGGCCAAACATCCAACTCACTCTATCTCTACATCTTCACCATCAATTGTTAATCCAAGAAGTAACCCACCAAACAATCCTCAATCTTTGAAAGTGAAATTCAAATGTACCCCGTCAAACTTTGGTAGGAATAGTGTGTTTCAGTCTTATCCAACAAACCCAACTGGAAAAAGATCAAAACGCAAACCAAGACAGTTTCATATGGCTGAAGAAAGAGAAGAGAATATAGAATTTAACATGGCTGAAGAAAAAGAAGATAATACACAATTACAATCAGCGTATAGCGATTTGGATATAGAAGCTGCTGAAACACTAGGTGTTATTCTTAAGAATGAATGGAAACAAATTGAGGACAAATACTACACTGAGAAGAAAAAAGCAAGTGAAAATGGAAACACCGTGTTTGAGTGTGATATTTGTCATGAAGTGTTTCAATCTAGCAAAGATCTTTTCGGACATGAAGATATCCATAGGAAAACTAACAATCTAGCAGGAGAGATTGGTAGAAGTGGAAACATATATGATGTCGTAAATGAAAAAGTGCATAAGTGCGAATATTGCTTTGACATCTTTGAATCTGGTCACGTATTGGAGGAACACATGAAGGTACACCTATACAATTATTATGATTCTGACCCATAG

Protein sequence

>MS.gene058393.t1

MENNGRVCLICNRSFSNGKALGGHMKSHYAKLPIHPKPPINNQVPEYSAELAKHPTHSISTSSPSIVNPRSNPPNNPQSLKVKFKCTPSNFGRNSVFQSYPTNPTGKRSKRKPRQFHMAEEREENIEFNMAEEKEDNTQLQSAYSDLDIEAAETLGVILKNEWKQIEDKYYTEKKKASENGNTVFECDICHEVFQSSKDLFGHEDIHRKTNNLAGEIGRSGNIYDVVNEKVHKCEYCFDIFESGHVLEEHMKVHLYNYYDSDP