Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058434.t1 | XP_024627936.1 | 59.6 | 312 | 108 | 5 | 1 | 295 | 6 | 316 | 3.90E-92 | 348.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058434.t1 | Q9SZL8 | 47.0 | 164 | 87 | 0 | 113 | 276 | 392 | 555 | 3.2e-39 | 163.7 |
| MS.gene058434.t1 | Q9SZL8 | 49.1 | 57 | 29 | 0 | 37 | 93 | 71 | 127 | 1.0e-08 | 62.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058434.t1 | A0A396JW00 | 39.2 | 538 | 83 | 3 | 1 | 295 | 14 | 550 | 3.5e-87 | 331.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene058434.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058434.t1 | MTR_3g005220 | 60.215 | 93 | 32 | 3 | 1 | 92 | 37 | 125 | 6.57e-32 | 116 |
| MS.gene058434.t1 | MTR_6g025550 | 50.000 | 116 | 24 | 2 | 119 | 234 | 47 | 128 | 3.80e-29 | 108 |
| MS.gene058434.t1 | MTR_2g098880 | 51.515 | 66 | 32 | 0 | 37 | 102 | 59 | 124 | 5.06e-15 | 73.6 |
| MS.gene058434.t1 | MTR_2g098880 | 51.515 | 66 | 32 | 0 | 37 | 102 | 71 | 136 | 6.66e-15 | 73.6 |
| MS.gene058434.t1 | MTR_4g035820 | 39.806 | 103 | 60 | 1 | 175 | 277 | 327 | 427 | 7.34e-15 | 75.5 |
| MS.gene058434.t1 | MTR_6g060130 | 54.839 | 62 | 26 | 2 | 1 | 61 | 62 | 122 | 5.24e-14 | 67.8 |
| MS.gene058434.t1 | MTR_2g098920 | 38.095 | 84 | 48 | 1 | 14 | 93 | 51 | 134 | 2.64e-12 | 66.2 |
| MS.gene058434.t1 | MTR_6g022070 | 27.407 | 135 | 97 | 1 | 128 | 261 | 33 | 167 | 2.96e-12 | 66.6 |
| MS.gene058434.t1 | MTR_3g020080 | 37.634 | 93 | 37 | 2 | 151 | 239 | 7 | 82 | 5.78e-12 | 62.8 |
| MS.gene058434.t1 | MTR_8g465780 | 35.922 | 103 | 65 | 1 | 168 | 269 | 1 | 103 | 5.01e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058434.t1 | AT4G38180 | 46.951 | 164 | 87 | 0 | 113 | 276 | 392 | 555 | 6.43e-46 | 166 |
| MS.gene058434.t1 | AT4G38170 | 35.714 | 154 | 99 | 0 | 117 | 270 | 161 | 314 | 3.20e-33 | 128 |
| MS.gene058434.t1 | AT4G15090 | 36.905 | 168 | 105 | 1 | 113 | 280 | 368 | 534 | 1.08e-32 | 128 |
| MS.gene058434.t1 | AT4G15090 | 36.905 | 168 | 105 | 1 | 113 | 280 | 368 | 534 | 1.08e-32 | 128 |
| MS.gene058434.t1 | AT4G15090 | 36.905 | 168 | 105 | 1 | 113 | 280 | 368 | 534 | 1.08e-32 | 128 |
| MS.gene058434.t1 | AT4G15090 | 36.905 | 168 | 105 | 1 | 113 | 280 | 368 | 534 | 1.08e-32 | 128 |
| MS.gene058434.t1 | AT4G15090 | 36.905 | 168 | 105 | 1 | 113 | 280 | 368 | 534 | 1.08e-32 | 128 |
| MS.gene058434.t1 | AT5G18960 | 41.290 | 155 | 88 | 1 | 127 | 281 | 503 | 654 | 1.30e-32 | 127 |
| MS.gene058434.t1 | AT5G18960 | 39.785 | 93 | 53 | 1 | 35 | 127 | 39 | 128 | 4.36e-13 | 70.1 |
| MS.gene058434.t1 | AT5G18960 | 41.290 | 155 | 88 | 1 | 127 | 281 | 503 | 654 | 1.30e-32 | 127 |
| MS.gene058434.t1 | AT5G18960 | 39.785 | 93 | 53 | 1 | 35 | 127 | 39 | 128 | 4.36e-13 | 70.1 |
| MS.gene058434.t1 | AT2G27110 | 35.000 | 180 | 110 | 3 | 117 | 296 | 198 | 370 | 4.92e-31 | 123 |
| MS.gene058434.t1 | AT2G27110 | 35.000 | 180 | 110 | 3 | 117 | 296 | 343 | 515 | 5.25e-31 | 123 |
| MS.gene058434.t1 | AT2G27110 | 35.000 | 180 | 110 | 3 | 117 | 296 | 343 | 515 | 5.25e-31 | 123 |
| MS.gene058434.t1 | AT3G06250 | 38.065 | 155 | 93 | 1 | 127 | 281 | 479 | 630 | 9.82e-30 | 119 |
| MS.gene058434.t1 | AT3G06250 | 38.261 | 115 | 65 | 2 | 16 | 127 | 2 | 113 | 4.14e-15 | 76.3 |
| MS.gene058434.t1 | AT3G06250 | 38.065 | 155 | 93 | 1 | 127 | 281 | 479 | 630 | 9.82e-30 | 119 |
| MS.gene058434.t1 | AT3G06250 | 38.261 | 115 | 65 | 2 | 16 | 127 | 2 | 113 | 4.14e-15 | 76.3 |
| MS.gene058434.t1 | AT3G06250 | 38.065 | 155 | 93 | 1 | 127 | 281 | 479 | 630 | 9.82e-30 | 119 |
| MS.gene058434.t1 | AT3G06250 | 38.261 | 115 | 65 | 2 | 16 | 127 | 2 | 113 | 4.14e-15 | 76.3 |
| MS.gene058434.t1 | AT3G22170 | 34.591 | 159 | 104 | 0 | 114 | 272 | 378 | 536 | 2.79e-28 | 115 |
| MS.gene058434.t1 | AT3G22170 | 34.591 | 159 | 104 | 0 | 114 | 272 | 378 | 536 | 2.79e-28 | 115 |
| MS.gene058434.t1 | AT1G52520 | 34.783 | 161 | 97 | 3 | 113 | 269 | 389 | 545 | 2.49e-25 | 106 |
| MS.gene058434.t1 | AT1G10240 | 32.105 | 190 | 122 | 4 | 114 | 297 | 371 | 559 | 1.82e-23 | 100 |
| MS.gene058434.t1 | AT1G10240 | 32.105 | 190 | 122 | 4 | 114 | 297 | 371 | 559 | 1.82e-23 | 100 |
| MS.gene058434.t1 | AT1G76320 | 31.447 | 159 | 109 | 0 | 114 | 272 | 306 | 464 | 3.46e-23 | 100 |
| MS.gene058434.t1 | AT1G76320 | 31.447 | 159 | 109 | 0 | 114 | 272 | 306 | 464 | 3.52e-23 | 100 |
| MS.gene058434.t1 | AT1G76320 | 31.447 | 159 | 109 | 0 | 114 | 272 | 306 | 464 | 3.87e-23 | 100 |
| MS.gene058434.t1 | AT1G76320 | 31.447 | 159 | 109 | 0 | 114 | 272 | 306 | 464 | 3.87e-23 | 100 |
| MS.gene058434.t1 | AT4G19990 | 30.061 | 163 | 114 | 0 | 110 | 272 | 313 | 475 | 4.26e-22 | 97.1 |
| MS.gene058434.t1 | AT4G19990 | 30.061 | 163 | 114 | 0 | 110 | 272 | 313 | 475 | 4.26e-22 | 97.1 |
| MS.gene058434.t1 | AT4G19990 | 30.061 | 163 | 114 | 0 | 110 | 272 | 256 | 418 | 4.56e-22 | 96.7 |
| MS.gene058434.t1 | AT4G19990 | 30.061 | 163 | 114 | 0 | 110 | 272 | 327 | 489 | 4.63e-22 | 97.1 |
| MS.gene058434.t1 | AT4G19990 | 30.061 | 163 | 114 | 0 | 110 | 272 | 313 | 475 | 4.72e-22 | 96.7 |
| MS.gene058434.t1 | AT4G19990 | 30.061 | 163 | 114 | 0 | 110 | 272 | 313 | 475 | 4.96e-22 | 96.7 |
| MS.gene058434.t1 | AT4G19990 | 30.061 | 163 | 114 | 0 | 110 | 272 | 313 | 475 | 4.96e-22 | 96.7 |
| MS.gene058434.t1 | AT2G32250 | 30.435 | 184 | 121 | 3 | 114 | 296 | 313 | 490 | 1.95e-20 | 92.0 |
| MS.gene058434.t1 | AT2G32250 | 30.435 | 184 | 121 | 3 | 114 | 296 | 313 | 490 | 1.95e-20 | 92.0 |
| MS.gene058434.t1 | AT2G32250 | 30.435 | 184 | 121 | 3 | 114 | 296 | 313 | 490 | 1.95e-20 | 92.0 |
| MS.gene058434.t1 | AT2G32250 | 30.435 | 184 | 121 | 3 | 114 | 296 | 313 | 490 | 2.08e-20 | 92.0 |
| MS.gene058434.t1 | AT2G32250 | 30.435 | 184 | 121 | 3 | 114 | 296 | 313 | 490 | 2.08e-20 | 92.0 |
| MS.gene058434.t1 | AT2G32250 | 30.435 | 184 | 121 | 3 | 114 | 296 | 313 | 490 | 2.20e-20 | 92.0 |
| MS.gene058434.t1 | AT2G32250 | 30.435 | 184 | 121 | 3 | 114 | 296 | 272 | 449 | 2.28e-20 | 92.0 |
| MS.gene058434.t1 | AT2G32250 | 30.435 | 184 | 121 | 3 | 114 | 296 | 272 | 449 | 2.32e-20 | 92.0 |
| MS.gene058434.t1 | AT1G80010 | 29.630 | 162 | 103 | 2 | 119 | 269 | 409 | 570 | 4.09e-18 | 85.1 |
| MS.gene058434.t1 | AT5G28530 | 27.692 | 130 | 92 | 1 | 143 | 272 | 352 | 479 | 2.03e-13 | 70.9 |
| MS.gene058434.t1 | AT5G28530 | 27.692 | 130 | 92 | 1 | 143 | 272 | 415 | 542 | 2.32e-13 | 70.9 |
| MS.gene058434.t1 | AT5G28530 | 26.923 | 130 | 89 | 1 | 143 | 272 | 352 | 475 | 1.06e-12 | 68.9 |
| MS.gene058434.t1 | AT5G28530 | 26.923 | 130 | 89 | 1 | 143 | 272 | 415 | 538 | 1.26e-12 | 68.6 |
| MS.gene058434.t1 | AT5G28530 | 26.923 | 130 | 89 | 1 | 143 | 272 | 415 | 538 | 1.26e-12 | 68.6 |
Find 60 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCATACTTTCACTTCTT+TGG | 0.142920 | 1.4:+6941003 | None:intergenic |
| AATGGTAGTTCGTTATTTAT+AGG | 0.193209 | 1.4:+6942232 | None:intergenic |
| GAAAATGTTTAGAATATTTC+AGG | 0.197001 | 1.4:-6940799 | MS.gene058434:CDS |
| TTGTTCAAAGGAAGGGTTTC+GGG | 0.231331 | 1.4:-6942050 | MS.gene058434:CDS |
| ATTCATACTTTCACTTCTTT+GGG | 0.265156 | 1.4:+6941004 | None:intergenic |
| CATTCCTTCAAAGGGCTCTA+AGG | 0.274189 | 1.4:+6942201 | None:intergenic |
| CTCTCTTTCCTTGTTGTAAC+GGG | 0.308781 | 1.4:+6940905 | None:intergenic |
| AGAACAGACGGAATGATAAT+TGG | 0.340924 | 1.4:-6942085 | MS.gene058434:CDS |
| TATACTCCATTCGAGCAAAA+TGG | 0.347854 | 1.4:-6941073 | MS.gene058434:CDS |
| ATGTCAAGAGCAGCAGTTTC+AGG | 0.356702 | 1.4:+6942259 | None:intergenic |
| TAGAAGAATTTGATTCTGAA+TGG | 0.406738 | 1.4:-6941148 | MS.gene058434:CDS |
| TTTGATGCTTCTTCTTCCAT+TGG | 0.427301 | 1.4:+6940834 | None:intergenic |
| TCTCTCTTTCCTTGTTGTAA+CGG | 0.435704 | 1.4:+6940904 | None:intergenic |
| ATATTTCAGGATGAATTAGT+TGG | 0.438960 | 1.4:-6940786 | MS.gene058434:CDS |
| TTTGTTCAAAGGAAGGGTTT+CGG | 0.447784 | 1.4:-6942051 | MS.gene058434:CDS |
| AGAAGAATTTGATTCTGAAT+GGG | 0.459561 | 1.4:-6941147 | MS.gene058434:CDS |
| ATTTCATGTGGTTCTTTGAC+TGG | 0.467003 | 1.4:+6940687 | None:intergenic |
| GAAGCAATGATAGATACATA+TGG | 0.475667 | 1.4:-6941125 | MS.gene058434:CDS |
| CTTAGAGCCCTTTGAAGGAA+TGG | 0.476103 | 1.4:-6942200 | MS.gene058434:CDS |
| AGGCAAGGAATCACTACAAA+AGG | 0.478706 | 1.4:-6942159 | MS.gene058434:CDS |
| GGATATAAAGTTCGCAAAAG+TGG | 0.480862 | 1.4:+6940855 | None:intergenic |
| ATTCCTTCAAAGGGCTCTAA+GGG | 0.488264 | 1.4:+6942202 | None:intergenic |
| CCTTGTTGTAACGGGCATCA+AGG | 0.494322 | 1.4:+6940913 | None:intergenic |
| TGTGAACTCCATTCCTTCAA+AGG | 0.507742 | 1.4:+6942192 | None:intergenic |
| TTCAGAATCAAATTCTTCTA+CGG | 0.510630 | 1.4:+6941151 | None:intergenic |
| TTTGCGAACTTTATATCCAA+TGG | 0.514843 | 1.4:-6940850 | MS.gene058434:CDS |
| GTGAACTCCATTCCTTCAAA+GGG | 0.518109 | 1.4:+6942193 | None:intergenic |
| TGTGTCACAAACTTGCTCAA+TGG | 0.518813 | 1.4:+6940948 | None:intergenic |
| CTTGTTGTAACGGGCATCAA+GGG | 0.519566 | 1.4:+6940914 | None:intergenic |
| GTGATTCCTTGCCTCTTCGA+TGG | 0.520594 | 1.4:+6942168 | None:intergenic |
| TAAAGAGTTTCTTTGTTCAA+AGG | 0.523442 | 1.4:-6942062 | MS.gene058434:CDS |
| GAGTTTCTTTGTTCAAAGGA+AGG | 0.524715 | 1.4:-6942058 | MS.gene058434:CDS |
| GTGTCAGACATGATGAAACT+AGG | 0.525439 | 1.4:-6941994 | MS.gene058434:CDS |
| AAATCATGACGTACATAAGC+AGG | 0.530663 | 1.4:+6941047 | None:intergenic |
| AGTTTCTTTGTTCAAAGGAA+GGG | 0.533222 | 1.4:-6942057 | MS.gene058434:CDS |
| CATACTTTCACTTCTTTGGG+TGG | 0.533845 | 1.4:+6941007 | None:intergenic |
| ATGGGTTGCAAGATAATCAA+TGG | 0.535566 | 1.4:-6941106 | MS.gene058434:CDS |
| AAGCAATGATAGATACATAT+GGG | 0.546295 | 1.4:-6941124 | MS.gene058434:CDS |
| ATTCTTCTACGGTCGTACAT+AGG | 0.554757 | 1.4:+6941162 | None:intergenic |
| TAGACATGATTCAAGTACTC+TGG | 0.558386 | 1.4:+6941230 | None:intergenic |
| TACTCCGTAAAACCTCTTGT+GGG | 0.567230 | 1.4:+6940728 | None:intergenic |
| GGAAATATTTGTCCCACAAG+AGG | 0.569747 | 1.4:-6940740 | MS.gene058434:CDS |
| TGAAACTGCTGCTCTTGACA+TGG | 0.571525 | 1.4:-6942257 | MS.gene058434:CDS |
| CTGTTCTTGATTTAGTAACA+CGG | 0.577898 | 1.4:+6942101 | None:intergenic |
| AGTAACACGGCCCATGCGAA+AGG | 0.583261 | 1.4:+6942114 | None:intergenic |
| TTACTCCGTAAAACCTCTTG+TGG | 0.584093 | 1.4:+6940727 | None:intergenic |
| AATGGTTAAAACATTTCATG+TGG | 0.589009 | 1.4:+6940675 | None:intergenic |
| AAGCATCAAAAGTTTATACA+AGG | 0.598083 | 1.4:-6940821 | MS.gene058434:CDS |
| TGTCAGACATGATGAAACTA+GGG | 0.602315 | 1.4:-6941993 | MS.gene058434:intron |
| CCTTGATGCCCGTTACAACA+AGG | 0.607670 | 1.4:-6940913 | MS.gene058434:CDS |
| GTTACTAAATCAAGAACAGA+CGG | 0.612323 | 1.4:-6942097 | MS.gene058434:CDS |
| TACGTCATCAGAACAAGCCA+TGG | 0.623252 | 1.4:+6942282 | None:intergenic |
| TCACATCCATCGAAGAGGCA+AGG | 0.624553 | 1.4:-6942174 | MS.gene058434:CDS |
| AAAAGGTACGCTAAGAACAA+AGG | 0.638535 | 1.4:-6942142 | MS.gene058434:CDS |
| TCCTTCAAAGGGCTCTAAGG+GGG | 0.640867 | 1.4:+6942204 | None:intergenic |
| CAGATTAAAGATGACAGATG+TGG | 0.651464 | 1.4:-6942317 | None:intergenic |
| TTCCTTCAAAGGGCTCTAAG+GGG | 0.673359 | 1.4:+6942203 | None:intergenic |
| GTCATCAGAACAAGCCATGG+TGG | 0.673852 | 1.4:+6942285 | None:intergenic |
| GGAGTTCACATCCATCGAAG+AGG | 0.673976 | 1.4:-6942179 | MS.gene058434:CDS |
| TGTGGATGAAGATTCCACCA+TGG | 0.737062 | 1.4:-6942299 | MS.gene058434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTATGAATAAATTTTTTA+AGG | - | chr1.4:6941996-6942015 | MS.gene058434:CDS | 10.0% |
| !! | TATTTAAAAAAAAGTGAAGA+TGG | - | chr1.4:6941037-6941056 | MS.gene058434:CDS | 15.0% |
| !! | TATTTATTTGTCAAGTATGT+CGG | + | chr1.4:6941487-6941506 | None:intergenic | 20.0% |
| !! | TTAATCATCATTATTGTATG+TGG | - | chr1.4:6941716-6941735 | MS.gene058434:intron | 20.0% |
| !!! | AAAATGGCATACAAATATTT+TGG | - | chr1.4:6941442-6941461 | MS.gene058434:intron | 20.0% |
| !!! | AAAATTAGCAAATTGCTTTT+GGG | - | chr1.4:6941405-6941424 | MS.gene058434:intron | 20.0% |
| !!! | CAATTGACAATTTTTAAAGT+AGG | + | chr1.4:6941341-6941360 | None:intergenic | 20.0% |
| !!! | GAAAATGTTTAGAATATTTC+AGG | - | chr1.4:6942188-6942207 | MS.gene058434:CDS | 20.0% |
| ! | AAAAAAAAGTGAAGATGGAT+GGG | - | chr1.4:6941042-6941061 | MS.gene058434:CDS | 25.0% |
| ! | AAGCAATGATAGATACATAT+GGG | - | chr1.4:6941863-6941882 | MS.gene058434:intron | 25.0% |
| ! | AAGCATCAAAAGTTTATACA+AGG | - | chr1.4:6942166-6942185 | MS.gene058434:CDS | 25.0% |
| ! | AATAACATCTGTCTTATGTA+CGG | - | chr1.4:6941207-6941226 | MS.gene058434:CDS | 25.0% |
| ! | AATGGTAGTTCGTTATTTAT+AGG | + | chr1.4:6940758-6940777 | None:intergenic | 25.0% |
| ! | AGAAGAATTTGATTCTGAAT+GGG | - | chr1.4:6941840-6941859 | MS.gene058434:intron | 25.0% |
| ! | AGACAAAAGCAATTAGAAAA+AGG | - | chr1.4:6941295-6941314 | MS.gene058434:intron | 25.0% |
| ! | ATATTTCAGGATGAATTAGT+TGG | - | chr1.4:6942201-6942220 | MS.gene058434:CDS | 25.0% |
| ! | ATTCATACTTTCACTTCTTT+GGG | + | chr1.4:6941986-6942005 | None:intergenic | 25.0% |
| ! | CAATAATGATGATTAACCTT+TGG | + | chr1.4:6941712-6941731 | None:intergenic | 25.0% |
| ! | GAGAAAATAGTACATGATTA+TGG | + | chr1.4:6941090-6941109 | None:intergenic | 25.0% |
| ! | TAAAAAAAAGTGAAGATGGA+TGG | - | chr1.4:6941041-6941060 | MS.gene058434:CDS | 25.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | - | chr1.4:6940925-6940944 | MS.gene058434:CDS | 25.0% |
| ! | TAGAAGAATTTGATTCTGAA+TGG | - | chr1.4:6941839-6941858 | MS.gene058434:intron | 25.0% |
| ! | TATTCATACTTTCACTTCTT+TGG | + | chr1.4:6941987-6942006 | None:intergenic | 25.0% |
| ! | TTCAGAATCAAATTCTTCTA+CGG | + | chr1.4:6941839-6941858 | None:intergenic | 25.0% |
| !! | CATCAACAATCTATTCTTTT+TGG | - | chr1.4:6941544-6941563 | MS.gene058434:intron | 25.0% |
| !! | CTCAAATATTCGTACATTTT+CGG | - | chr1.4:6942226-6942245 | MS.gene058434:CDS | 25.0% |
| !! | GAAAATTAGCAAATTGCTTT+TGG | - | chr1.4:6941404-6941423 | MS.gene058434:intron | 25.0% |
| !! | GTTTTTCTATGCATTTCAAA+TGG | - | chr1.4:6941372-6941391 | MS.gene058434:intron | 25.0% |
| !!! | AAACTAAAGAGAGTTTTGTT+TGG | - | chr1.4:6941587-6941606 | MS.gene058434:intron | 25.0% |
| !!! | ATACAAATATTTTGGTGATG+TGG | - | chr1.4:6941450-6941469 | MS.gene058434:intron | 25.0% |
| AATTGTCAATTGAAGAATCC+TGG | - | chr1.4:6941349-6941368 | MS.gene058434:intron | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | - | chr1.4:6940930-6940949 | MS.gene058434:CDS | 30.0% | |
| ATTGTCAATTGAAGAATCCT+GGG | - | chr1.4:6941350-6941369 | MS.gene058434:intron | 30.0% | |
| CTGTTCTTGATTTAGTAACA+CGG | + | chr1.4:6940889-6940908 | None:intergenic | 30.0% | |
| GAAGCAATGATAGATACATA+TGG | - | chr1.4:6941862-6941881 | MS.gene058434:intron | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | - | chr1.4:6940890-6940909 | MS.gene058434:CDS | 30.0% | |
| TTTGCGAACTTTATATCCAA+TGG | - | chr1.4:6942137-6942156 | MS.gene058434:CDS | 30.0% | |
| ! | CGAAGAAATTGACAACTTTT+AGG | + | chr1.4:6941112-6941131 | None:intergenic | 30.0% |
| !!! | AAGACAGATGTTATTTTGCT+AGG | + | chr1.4:6941202-6941221 | None:intergenic | 30.0% |
| !!! | TATTCTTTTTGGTTGTGCTT+TGG | - | chr1.4:6941555-6941574 | MS.gene058434:intron | 30.0% |
| !!! | TGATCTGTGATAATGGTTTT+AGG | + | chr1.4:6941652-6941671 | None:intergenic | 30.0% |
| AAATCATGACGTACATAAGC+AGG | + | chr1.4:6941943-6941962 | None:intergenic | 35.0% | |
| ACCATCTTGATCTGTGATAA+TGG | + | chr1.4:6941659-6941678 | None:intergenic | 35.0% | |
| ACCATTATCACAGATCAAGA+TGG | - | chr1.4:6941655-6941674 | MS.gene058434:intron | 35.0% | |
| AGAACAGACGGAATGATAAT+TGG | - | chr1.4:6940902-6940921 | MS.gene058434:CDS | 35.0% | |
| ATGATGATTAACTCCAGTGA+AGG | + | chr1.4:6941527-6941546 | None:intergenic | 35.0% | |
| ATTTCATGTGGTTCTTTGAC+TGG | + | chr1.4:6942303-6942322 | None:intergenic | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | - | chr1.4:6940929-6940948 | MS.gene058434:CDS | 35.0% | |
| GGATATAAAGTTCGCAAAAG+TGG | + | chr1.4:6942135-6942154 | None:intergenic | 35.0% | |
| TAGACATGATTCAAGTACTC+TGG | + | chr1.4:6941760-6941779 | None:intergenic | 35.0% | |
| TATACTCCATTCGAGCAAAA+TGG | - | chr1.4:6941914-6941933 | MS.gene058434:intron | 35.0% | |
| TGAAATGCATAGAAAAACCC+AGG | + | chr1.4:6941370-6941389 | None:intergenic | 35.0% | |
| TGATGATTAACTCCAGTGAA+GGG | + | chr1.4:6941526-6941545 | None:intergenic | 35.0% | |
| TGTCAGACATGATGAAACTA+GGG | - | chr1.4:6940994-6941013 | MS.gene058434:CDS | 35.0% | |
| TTTGATGCTTCTTCTTCCAT+TGG | + | chr1.4:6942156-6942175 | None:intergenic | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | - | chr1.4:6940936-6940955 | MS.gene058434:CDS | 35.0% | |
| ! | AAAAGGTACGCTAAGAACAA+AGG | - | chr1.4:6940845-6940864 | MS.gene058434:CDS | 35.0% |
| ! | AAAGGTTTTACCTTTCGCAT+GGG | - | chr1.4:6940863-6940882 | MS.gene058434:CDS | 35.0% |
| ! | ATGGGTTGCAAGATAATCAA+TGG | - | chr1.4:6941881-6941900 | MS.gene058434:intron | 35.0% |
| ! | GGTTGATTCAAGGTCTAAAA+TGG | - | chr1.4:6941426-6941445 | MS.gene058434:intron | 35.0% |
| ! | TCTCTCTTTCCTTGTTGTAA+CGG | + | chr1.4:6942086-6942105 | None:intergenic | 35.0% |
| !! | TTTTGGTTGTGCTTTGGTAT+GGG | - | chr1.4:6941561-6941580 | MS.gene058434:intron | 35.0% |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | - | chr1.4:6941416-6941435 | MS.gene058434:intron | 35.0% |
| !!! | TTTTTGGTTGTGCTTTGGTA+TGG | - | chr1.4:6941560-6941579 | MS.gene058434:intron | 35.0% |
| ACTTGGTTAGAAGCAATGGA+TGG | - | chr1.4:6941619-6941638 | MS.gene058434:intron | 40.0% | |
| AGACATGATGAAACTAGGGT+AGG | - | chr1.4:6940998-6941017 | MS.gene058434:CDS | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | - | chr1.4:6940828-6940847 | MS.gene058434:CDS | 40.0% | |
| ATTCTTCTACGGTCGTACAT+AGG | + | chr1.4:6941828-6941847 | None:intergenic | 40.0% | |
| ATTGATGTGCTGCATGATTC+TGG | - | chr1.4:6941169-6941188 | MS.gene058434:CDS | 40.0% | |
| CATACTTTCACTTCTTTGGG+TGG | + | chr1.4:6941983-6942002 | None:intergenic | 40.0% | |
| GCATTTCAAATGGATGCTGA+AGG | - | chr1.4:6941382-6941401 | MS.gene058434:intron | 40.0% | |
| GGAAATATTTGTCCCACAAG+AGG | - | chr1.4:6942247-6942266 | MS.gene058434:CDS | 40.0% | |
| GTGAACTCCATTCCTTCAAA+GGG | + | chr1.4:6940797-6940816 | None:intergenic | 40.0% | |
| GTGTCAGACATGATGAAACT+AGG | - | chr1.4:6940993-6941012 | MS.gene058434:CDS | 40.0% | |
| TACTCCGTAAAACCTCTTGT+GGG | + | chr1.4:6942262-6942281 | None:intergenic | 40.0% | |
| TCTGTCTTATGTACGGAAAG+TGG | - | chr1.4:6941214-6941233 | MS.gene058434:CDS | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | + | chr1.4:6940798-6940817 | None:intergenic | 40.0% | |
| TTACTCCGTAAAACCTCTTG+TGG | + | chr1.4:6942263-6942282 | None:intergenic | 40.0% | |
| TTGTTCAAAGGAAGGGTTTC+GGG | - | chr1.4:6940937-6940956 | MS.gene058434:CDS | 40.0% | |
| ! | AGATGGTTCTATCACGTATG+CGG | - | chr1.4:6941672-6941691 | MS.gene058434:intron | 40.0% |
| ! | AGGAATCCATTTTGCTCGAA+TGG | + | chr1.4:6941923-6941942 | None:intergenic | 40.0% |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | + | chr1.4:6940788-6940807 | None:intergenic | 40.0% |
| ! | CAAAGGTTTTACCTTTCGCA+TGG | - | chr1.4:6940862-6940881 | MS.gene058434:CDS | 40.0% |
| ! | CTCTCTTTCCTTGTTGTAAC+GGG | + | chr1.4:6942085-6942104 | None:intergenic | 40.0% |
| ! | GTACGTCATGATTTTTGTGC+TGG | - | chr1.4:6941949-6941968 | MS.gene058434:intron | 40.0% |
| ! | TGTGTCACAAACTTGCTCAA+TGG | + | chr1.4:6942042-6942061 | None:intergenic | 40.0% |
| ! | TTGTCCCACAAGAGGTTTTA+CGG | - | chr1.4:6942255-6942274 | MS.gene058434:CDS | 40.0% |
| !! | AGTGGTGGTGTTGATAACAT+TGG | - | chr1.4:6941232-6941251 | MS.gene058434:CDS | 40.0% |
| ACTCCAGTGAAGGGAACAAA+CGG | + | chr1.4:6941517-6941536 | None:intergenic | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | + | chr1.4:6940731-6940750 | None:intergenic | 45.0% | |
| CATTCCTTCAAAGGGCTCTA+AGG | + | chr1.4:6940789-6940808 | None:intergenic | 45.0% | |
| GCGTACTTGGTTAGAAGCAA+TGG | - | chr1.4:6941615-6941634 | MS.gene058434:intron | 45.0% | |
| GTCTTATGTACGGAAAGTGG+TGG | - | chr1.4:6941217-6941236 | MS.gene058434:CDS | 45.0% | |
| TACGTCATCAGAACAAGCCA+TGG | + | chr1.4:6940708-6940727 | None:intergenic | 45.0% | |
| TGAAACTAGGGTAGGATGCA+AGG | - | chr1.4:6941006-6941025 | MS.gene058434:CDS | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | - | chr1.4:6940730-6940749 | MS.gene058434:CDS | 45.0% | |
| TGTGGATGAAGATTCCACCA+TGG | - | chr1.4:6940688-6940707 | MS.gene058434:CDS | 45.0% | |
| TTGTTTGGTTGCTGCGTACT+TGG | - | chr1.4:6941602-6941621 | MS.gene058434:intron | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | - | chr1.4:6940787-6940806 | MS.gene058434:CDS | 45.0% |
| !! | CTTGTTGTAACGGGCATCAA+GGG | + | chr1.4:6942076-6942095 | None:intergenic | 45.0% |
| !! | GTGCTGCATGATTCTGGTTT+AGG | - | chr1.4:6941175-6941194 | MS.gene058434:CDS | 45.0% |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | + | chr1.4:6940787-6940806 | None:intergenic | 45.0% |
| CCTTGATGCCCGTTACAACA+AGG | - | chr1.4:6942074-6942093 | MS.gene058434:CDS | 50.0% | |
| GGAGTTCACATCCATCGAAG+AGG | - | chr1.4:6940808-6940827 | MS.gene058434:CDS | 50.0% | |
| GTCATCAGAACAAGCCATGG+TGG | + | chr1.4:6940705-6940724 | None:intergenic | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | + | chr1.4:6940822-6940841 | None:intergenic | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | - | chr1.4:6940813-6940832 | MS.gene058434:CDS | 50.0% | |
| ! | ATGCCGTTTGTTCCCTTCAC+TGG | - | chr1.4:6941511-6941530 | MS.gene058434:intron | 50.0% |
| !! | CCTTGTTGTAACGGGCATCA+AGG | + | chr1.4:6942077-6942096 | None:intergenic | 50.0% |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | + | chr1.4:6940786-6940805 | None:intergenic | 50.0% |
| AGTAACACGGCCCATGCGAA+AGG | + | chr1.4:6940876-6940895 | None:intergenic | 55.0% | |
| TATCACGTATGCGGTCGCGA+AGG | - | chr1.4:6941681-6941700 | MS.gene058434:intron | 55.0% | |
| TCCCCCTTAGAGCCCTTTGA+AGG | - | chr1.4:6940782-6940801 | MS.gene058434:CDS | 55.0% | |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | + | chr1.4:6940776-6940795 | None:intergenic | 55.0% |
| !! | GGTCGCGAAGGTGTTTCCAA+AGG | - | chr1.4:6941693-6941712 | MS.gene058434:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 6940680 | 6942329 | 6940680 | ID=MS.gene058434 |
| chr1.4 | mRNA | 6940680 | 6942329 | 6940680 | ID=MS.gene058434.t1;Parent=MS.gene058434 |
| chr1.4 | exon | 6941994 | 6942329 | 6941994 | ID=MS.gene058434.t1.exon1;Parent=MS.gene058434.t1 |
| chr1.4 | CDS | 6941994 | 6942329 | 6941994 | ID=cds.MS.gene058434.t1;Parent=MS.gene058434.t1 |
| chr1.4 | exon | 6940680 | 6941261 | 6940680 | ID=MS.gene058434.t1.exon2;Parent=MS.gene058434.t1 |
| chr1.4 | CDS | 6940680 | 6941261 | 6940680 | ID=cds.MS.gene058434.t1;Parent=MS.gene058434.t1 |
| Gene Sequence |
| Protein sequence |
