AlfalfaGEDB | MS.gene058557

M. sativa cultivar XinJiangDaYe / MS.gene058557

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058557.t1	AET05485.1	95.1	897	38	1	1	897	35	925	0.00E+00	1448.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058557.t1	P43298	53.3	896	388	12	4	878	35	921	4.5e-214	746.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058557.t1	G7LCB8	95.1	897	38	1	1	897	35	925	0.0e+00	1448.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058557.t1	MTR_8g106100	95.987	897	30	1	1	897	35	925	0.0	1768
MS.gene058557.t1	MTR_1g033000	62.249	898	313	13	1	885	30	914	0.0	1087
MS.gene058557.t1	MTR_1g033010	62.092	889	303	12	1	874	30	899	0.0	1028
MS.gene058557.t1	MTR_1g033040	60.292	889	326	8	14	889	44	918	0.0	1019
MS.gene058557.t1	MTR_5g077430	57.224	879	355	10	1	864	35	907	0.0	979
MS.gene058557.t1	MTR_3g084510	47.592	893	429	13	1	872	36	910	0.0	764
MS.gene058557.t1	MTR_7g106210	42.261	911	476	19	1	876	30	925	0.0	667
MS.gene058557.t1	MTR_2g087230	42.088	929	486	18	1	893	34	946	0.0	632
MS.gene058557.t1	MTR_8g083240	65.672	335	114	1	534	867	553	887	1.34e-148	462
MS.gene058557.t1	MTR_4g051605	58.967	368	145	2	527	893	592	954	2.67e-142	447

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058557.t1	AT1G66150	55.809	878	361	11	4	863	35	903	0.0	980
MS.gene058557.t1	AT2G01820	53.959	884	375	13	1	865	33	903	0.0	914
MS.gene058557.t1	AT1G24650	49.029	875	408	9	16	884	42	884	0.0	789
MS.gene058557.t1	AT3G23750	67.560	336	107	2	532	866	560	894	3.49e-158	488
MS.gene058557.t1	AT1G55610	30.164	852	506	30	38	838	331	1144	6.91e-85	296
MS.gene058557.t1	AT1G55610	27.681	401	248	17	22	403	66	443	3.95e-16	84.0
MS.gene058557.t1	AT1G55610	24.883	426	233	16	34	416	152	533	7.45e-11	67.0
MS.gene058557.t1	AT1G55610	30.164	852	506	30	38	838	331	1144	6.91e-85	296
MS.gene058557.t1	AT1G55610	27.681	401	248	17	22	403	66	443	3.95e-16	84.0
MS.gene058557.t1	AT1G55610	24.883	426	233	16	34	416	152	533	7.45e-11	67.0

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Find 207 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAACTGGAGCATTTA+TGG	0.142725	4.4:+1808077	None:intergenic
AAAAGTATCTGACTTTGGAT+TGG	0.473927	4.4:-1806021	MS.gene058557:CDS
AAACATTTGGTTTCACTCTT+AGG	0.135379	4.4:-1806284	MS.gene058557:CDS
AAAGGTGTGGTTCTTAAAAT+TGG	0.218988	4.4:-1806878	MS.gene058557:CDS
AAAGGTTCGACATAAACATT+TGG	0.423829	4.4:-1806297	MS.gene058557:CDS
AAATTTACCACTTGCAGGCT+TGG	0.436372	4.4:+1807346	None:intergenic
AACACAGTTGCTGAGTTGGC+CGG	0.527735	4.4:-1805327	MS.gene058557:CDS
AACATTTGGTTTCACTCTTA+GGG	0.385491	4.4:-1806283	MS.gene058557:CDS
AACCGTTAGAATGGAAGACA+CGG	0.652611	4.4:-1806163	MS.gene058557:CDS
AACGGGAAGACTAACAACAA+AGG	0.664044	4.4:-1805538	MS.gene058557:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAACTAATCCAGGGAA+GGG	+	chr4.4:1805503-1805522	None:intergenic	30.0%
AAAGGTTCGACATAAACATT+TGG	-	chr4.4:1806846-1806865	MS.gene058557:CDS	30.0%
AACTGTCTGATGTGAATTTA+AGG	-	chr4.4:1805729-1805748	MS.gene058557:intron	30.0%
AACTTCATAAGCATTACAAG+TGG	+	chr4.4:1806626-1806645	None:intergenic	30.0%
AATGATTGATAGGACAATTG+AGG	-	chr4.4:1807767-1807786	MS.gene058557:CDS	30.0%
AATGCCAAAAAAACTAATCC+AGG	+	chr4.4:1805509-1805528	None:intergenic	30.0%
ACATCCAATTCTTGTAGAAT+AGG	+	chr4.4:1806205-1806224	None:intergenic	30.0%
ACTGTCTGATGTGAATTTAA+GGG	-	chr4.4:1805730-1805749	MS.gene058557:intron	30.0%
ACTTCATAAGCATTACAAGT+GGG	+	chr4.4:1806625-1806644	None:intergenic	30.0%
ACTTGTAATGCTTATGAAGT+TGG	-	chr4.4:1806625-1806644	MS.gene058557:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	1805047	1808118	1805047	ID=MS.gene058557
chr4.4	mRNA	1805047	1808118	1805047	ID=MS.gene058557.t1;Parent=MS.gene058557
chr4.4	exon	1805940	1808118	1805940	ID=MS.gene058557.t1.exon1;Parent=MS.gene058557.t1
chr4.4	CDS	1805940	1808118	1805940	ID=cds.MS.gene058557.t1;Parent=MS.gene058557.t1
chr4.4	exon	1805047	1805561	1805047	ID=MS.gene058557.t1.exon2;Parent=MS.gene058557.t1
chr4.4	CDS	1805047	1805561	1805047	ID=cds.MS.gene058557.t1;Parent=MS.gene058557.t1

Gene Sequence

>MS.gene058557

ATGAATATTCTGAAGAAAACCATAAATGCTCCAGTTACTTTTCAATGGACAGATCCTGATGTATGTAAATGGAAACACGTTAATTGTGATTCAAGAAAACATGTCATTGCAATTCAAATAGGGAACCAGAATCTTCAAGGCTTTCTCCCGAAGGAACTTGTGATGTTAACGGCATTACAAAAGTTCGAGTGTCAAAGAAACGGCCTCATCGGTCCATTCCCTTACCTCTCAAAATCACTACAGAGGCTTCTAATCCACGACAACAAATTTAGCTCTCTTCCCAGCGATTTCTTCACGGGGATGAGCAATTTGCAAGAAGTAGAAATCGACAACAACCCCTTGCCTCCGTGGCAAATTCCTAACTCTCTTAAAGATTGTGTTGCACTCCAAACTTTCAGTGCTGAAAGCGTTAGCATTGTTGGGACTATTCCATATTTTTTTGGCAGAGATGGTCCCTTCCCTGGATTAGTTTTTTTGGCATTGTCTGGTAATTCATTAGAAGGTGTTTTGCCTGCAAGTCTTTCTGGAAGTTCAATAGAGAACCTTTTGGTCAATGGACAAAATAGCAACAATAAACTCAATGGTACCCTTGTTGTGTTACAAAACATGACATCTTTGAAACAAATATGGGTTAACGATAATTCATTTACAGGTCCTATACCCGATTTATCACAGCTTAACCAACTGTCTGATGTGAATTTAAGGGATAACCAGTTGACTGGTGTTGTTCCACCTTCTTTAATGAACCTTCCAAGCCTGCAAGTGGTAAATTTAACAAACAATCGTCTCCAAGGTTCACCTCCCAAGTTTAGAGACGGCGTTGGAGTTGATAATATTATCGGTGGGGGTAGAAACGAATTTTGCACAAATGTTCCAGGGCAACAATGTAGTCCTCTTGTGAATATTTTGTTATCAGTTGCTGAACCTTTGGGTTATCCTCTTAAGTTTGCTGAAAGTTGGCAGGGTAATGATCCTTGTGCTAATAAATGGATAGGTATAGTTTGTTCTGGTGGAAATATTTCAATTATCAATTTTCAGAACATAGGACTAAGTGGAACTATTTCTCCGAATTTTGCTAGTCTTTCTTCTTTGACAAAACTACTTCTTGCAAACAATGATATTACCGGTACCATACCTAATCAACTTAGTAGTATGCCTATTCTACAAGAATTGGATGTTTCTAATAATAATTTGTATGGTCGTGTGCCGTCGTTTCCAAAAGGTGTGGTTCTTAAAATTGGTGGGAATCCTGATATTGGGAAGGATAAACCCATTACTCCATCTGCAAGTAGCCATGGGCTTGGAAAAGACAATGGCAAAGACAAAGACGAAGACAAAGACAAAGAAAAAAACAAAAACAGTGTTGACGGCGTCAATGTTGGAATTGTGTTAGGGGTTGTCTTTGTACTTGGAATTGGGGCAATAATATTATTTATGTTCTGGAAAAGGTCAAGGAATCATACGAAGAAAGGTAAAAAACCTGATGCAATAACAACACATTCTAGTTATAAAGGTGGTGAAAATGTTGTGAAGGCGAGTGTTGCTGTTAGCGGTGGAGGAAGTGATGCCTTAAGTCCCACTTGTAATGCTTATGAAGTTGGTAACATGGTGATTTCAATTCAAGTTTTGAGACAAGTTACAAATAACTTTAGTGAGGAAAAGATAGTCGGGAAAGGTGGTTTTGGTATTGTGTACAAAGGGGAGTTGCATGATGGGACGCAAATTGCAGTGAAAAGGATGCAATCAGGAATGATGGGCGAAGGATCAAATGAATTCACGTCTGAGATTGAAGTGCTTACAAAGGTTCGACATAAACATTTGGTTTCACTCTTAGGGTATTGTTTGGATGGGAATGAGAAACTTTTGGTTTATGAGTACATGACTAAAGGTGCTTTAAGCAAACACTTGTTTGATTGGAAAGAGGAAGGGATAAAACCGTTAGAATGGAAGACACGGCTTAGTATTGCTTTAGATGTTGCTAGAGGTATTGAATATCTTCATGGGTTAACCCAACAAATTTTTATTCACAGGGATATCAAACCATCTAACATTTTGCTTGGAGAAGACATGCGAGCAAAAGTATCTGACTTTGGATTGGTTCGGCTTGCTCCTGAAGGAAAAGCTTCATTTCAAACTAGACTTGCCGGAACTTTTGGATATATGGCACCAGAGTATGCAGGTAGACATCTATGCTTATCCTTTAAACTACTTTTACATGTGGCTAGTTATAGTCATATTGAAAAAAAATTGTTATTTATTATATCGTTATTTTAAGTGATGTTATTTACTTTTTAGTTTATGATAATATTATTTTAGTGCAAGCATTCATTATGAAGATAAGTTACATAAATATTATTTATTTTGACATTACACTGTACATAAATTACTTTTGTGAATTATATTAAAACAAATTGATTGACCAATAAACTCGAGGCTCGTTTCTCCGATAATCATGATGATGATTAGATGTTGACATTCTATCATGCATTTATTTATTGATCATTTTTTGCCAATGTCTTAAAGGCACTAACCAACACTAAAATGAATAATTATGCAGCAACGGGAAGACTAACAACAAAGGCCGATGTATATAGTTTTGGTGTGGTTCTTATGGAGATCATAACAGGAAGGAAAGCACTTGATGGTAGCCAACTTGAAGAGAATATCCACCTTGTTACATGGTTTTGTAGGATGTTACTAAATAAGGATTCATTTCAATCAATGATTGATAGGACAATTGAGGTTGATGAAGAAACATATGCAAGCATAAACACAGTTGCTGAGTTGGCCGGACATTGTAGTGCAAGGGAGCCTTATCAGCGTCCTGACATGAGTCACGCTGTGAACGTGTTATCATCCCTTGTTGAAGTGTGGAAGCCTACAAAACAGGATGTTGATGACGTATACGGAATTAACTTTGATATGACATTACCGGAAGCTCTCAAAAGGTGGCAGGCTTTTGAAGGAAGTAGCACCCTCGATTTAACCCTTTCTCCTTCGACAATGAATACGAGTGGAGGCAGCACACAGACTTATCAATCTTCAAACGCGTCTTCACATGCACAAATGTAA

Protein sequence

>MS.gene058557.t1

MNILKKTINAPVTFQWTDPDVCKWKHVNCDSRKHVIAIQIGNQNLQGFLPKELVMLTALQKFECQRNGLIGPFPYLSKSLQRLLIHDNKFSSLPSDFFTGMSNLQEVEIDNNPLPPWQIPNSLKDCVALQTFSAESVSIVGTIPYFFGRDGPFPGLVFLALSGNSLEGVLPASLSGSSIENLLVNGQNSNNKLNGTLVVLQNMTSLKQIWVNDNSFTGPIPDLSQLNQLSDVNLRDNQLTGVVPPSLMNLPSLQVVNLTNNRLQGSPPKFRDGVGVDNIIGGGRNEFCTNVPGQQCSPLVNILLSVAEPLGYPLKFAESWQGNDPCANKWIGIVCSGGNISIINFQNIGLSGTISPNFASLSSLTKLLLANNDITGTIPNQLSSMPILQELDVSNNNLYGRVPSFPKGVVLKIGGNPDIGKDKPITPSASSHGLGKDNGKDKDEDKDKEKNKNSVDGVNVGIVLGVVFVLGIGAIILFMFWKRSRNHTKKGKKPDAITTHSSYKGGENVVKASVAVSGGGSDALSPTCNAYEVGNMVISIQVLRQVTNNFSEEKIVGKGGFGIVYKGELHDGTQIAVKRMQSGMMGEGSNEFTSEIEVLTKVRHKHLVSLLGYCLDGNEKLLVYEYMTKGALSKHLFDWKEEGIKPLEWKTRLSIALDVARGIEYLHGLTQQIFIHRDIKPSNILLGEDMRAKVSDFGLVRLAPEGKASFQTRLAGTFGYMAPEYAATGRLTTKADVYSFGVVLMEIITGRKALDGSQLEENIHLVTWFCRMLLNKDSFQSMIDRTIEVDEETYASINTVAELAGHCSAREPYQRPDMSHAVNVLSSLVEVWKPTKQDVDDVYGINFDMTLPEALKRWQAFEGSSTLDLTLSPSTMNTSGGSTQTYQSSNASSHAQM