Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058564.t1 | XP_003630992.1 | 97.5 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 1.50E-136 | 495.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058564.t1 | G7LBI1 | 97.5 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 1.1e-136 | 495.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene058564.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058564.t1 | MTR_8g105930 | 97.510 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 3.08e-179 | 491 |
| MS.gene058564.t1 | MTR_1g032880 | 41.837 | 196 | 66 | 2 | 46 | 241 | 16 | 163 | 8.41e-41 | 137 |
| MS.gene058564.t1 | MTR_4g116300 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 6.26e-21 | 88.6 |
| MS.gene058564.t1 | MTR_2g055210 | 30.345 | 145 | 78 | 4 | 15 | 158 | 104 | 226 | 1.59e-19 | 86.3 |
| MS.gene058564.t1 | MTR_4g094680 | 32.738 | 168 | 95 | 5 | 15 | 181 | 24 | 174 | 3.04e-19 | 84.0 |
| MS.gene058564.t1 | MTR_1g062160 | 35.374 | 147 | 71 | 6 | 15 | 158 | 9 | 134 | 5.17e-19 | 82.4 |
| MS.gene058564.t1 | MTR_5g030130 | 35.616 | 146 | 71 | 5 | 15 | 158 | 37 | 161 | 2.33e-17 | 78.6 |
| MS.gene058564.t1 | MTR_7g102790 | 33.974 | 156 | 77 | 6 | 15 | 165 | 9 | 143 | 5.59e-17 | 77.0 |
| MS.gene058564.t1 | MTR_5g030130 | 34.932 | 146 | 72 | 5 | 15 | 158 | 37 | 161 | 6.20e-17 | 76.6 |
| MS.gene058564.t1 | MTR_4g078170 | 34.932 | 146 | 72 | 5 | 15 | 158 | 17 | 141 | 7.28e-17 | 77.0 |
| MS.gene058564.t1 | MTR_2g036170 | 33.793 | 145 | 68 | 4 | 15 | 158 | 39 | 156 | 8.06e-17 | 77.4 |
| MS.gene058564.t1 | MTR_8g066820 | 33.951 | 162 | 82 | 6 | 1 | 158 | 19 | 159 | 1.77e-16 | 76.3 |
| MS.gene058564.t1 | MTR_5g007230 | 32.877 | 146 | 75 | 5 | 15 | 158 | 23 | 147 | 9.83e-16 | 73.9 |
| MS.gene058564.t1 | MTR_2g084510 | 31.613 | 155 | 89 | 5 | 15 | 165 | 5 | 146 | 1.04e-14 | 71.6 |
| MS.gene058564.t1 | MTR_2g084525 | 30.323 | 155 | 91 | 5 | 15 | 165 | 6 | 147 | 5.28e-14 | 69.7 |
| MS.gene058564.t1 | MTR_2g060540 | 29.932 | 147 | 86 | 5 | 15 | 157 | 12 | 145 | 3.81e-12 | 62.8 |
| MS.gene058564.t1 | MTR_2g060500 | 29.932 | 147 | 86 | 5 | 15 | 157 | 12 | 145 | 4.40e-12 | 62.4 |
| MS.gene058564.t1 | MTR_8g097310 | 31.250 | 112 | 54 | 3 | 50 | 158 | 4 | 95 | 2.36e-11 | 60.5 |
| MS.gene058564.t1 | MTR_2g084495 | 34.737 | 95 | 58 | 3 | 15 | 105 | 6 | 100 | 2.79e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058564.t1 | AT2G01818 | 42.331 | 163 | 73 | 5 | 5 | 161 | 2 | 149 | 7.24e-36 | 127 |
| MS.gene058564.t1 | AT3G60670 | 33.333 | 147 | 76 | 3 | 15 | 160 | 9 | 134 | 2.88e-22 | 92.0 |
| MS.gene058564.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 5 | 128 | 9.92e-21 | 88.2 |
| MS.gene058564.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 1.00e-20 | 88.2 |
| MS.gene058564.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 1.00e-20 | 88.2 |
| MS.gene058564.t1 | AT1G21000 | 36.735 | 147 | 70 | 5 | 15 | 159 | 18 | 143 | 1.08e-18 | 82.4 |
| MS.gene058564.t1 | AT1G21000 | 36.735 | 147 | 70 | 5 | 15 | 159 | 15 | 140 | 1.08e-18 | 82.4 |
| MS.gene058564.t1 | AT1G43000 | 30.769 | 234 | 123 | 10 | 15 | 237 | 18 | 223 | 5.09e-18 | 80.1 |
| MS.gene058564.t1 | AT1G43000 | 30.769 | 234 | 123 | 10 | 15 | 237 | 11 | 216 | 5.74e-18 | 80.1 |
| MS.gene058564.t1 | AT4G17900 | 32.515 | 163 | 86 | 5 | 1 | 159 | 20 | 162 | 8.59e-18 | 79.7 |
| MS.gene058564.t1 | AT1G76590 | 38.060 | 134 | 61 | 4 | 27 | 159 | 33 | 145 | 1.64e-17 | 79.3 |
| MS.gene058564.t1 | AT1G31040 | 30.675 | 163 | 90 | 3 | 15 | 176 | 21 | 161 | 6.02e-17 | 77.8 |
| MS.gene058564.t1 | AT4G17900 | 33.333 | 147 | 76 | 4 | 15 | 159 | 22 | 148 | 6.52e-17 | 77.0 |
| MS.gene058564.t1 | AT2G27930 | 33.333 | 150 | 85 | 5 | 15 | 161 | 6 | 143 | 6.55e-16 | 73.2 |
| MS.gene058564.t1 | AT2G27930 | 33.333 | 150 | 85 | 5 | 15 | 161 | 6 | 143 | 6.55e-16 | 73.2 |
| MS.gene058564.t1 | AT2G27930 | 33.333 | 147 | 83 | 5 | 15 | 158 | 6 | 140 | 1.74e-15 | 72.8 |
| MS.gene058564.t1 | AT2G27930 | 33.333 | 147 | 83 | 5 | 15 | 158 | 6 | 140 | 1.74e-15 | 72.8 |
| MS.gene058564.t1 | AT5G46710 | 31.902 | 163 | 84 | 5 | 1 | 161 | 21 | 158 | 2.23e-15 | 72.0 |
| MS.gene058564.t1 | AT2G01818 | 39.175 | 97 | 44 | 2 | 65 | 161 | 4 | 85 | 3.12e-15 | 71.2 |
| MS.gene058564.t1 | AT5G46710 | 31.677 | 161 | 83 | 5 | 1 | 159 | 21 | 156 | 6.45e-15 | 72.0 |
| MS.gene058564.t1 | AT1G32700 | 31.447 | 159 | 86 | 5 | 2 | 158 | 1 | 138 | 8.02e-15 | 71.2 |
| MS.gene058564.t1 | AT5G46710 | 31.447 | 159 | 82 | 5 | 3 | 159 | 7 | 140 | 2.00e-14 | 70.1 |
| MS.gene058564.t1 | AT1G32700 | 35.000 | 120 | 56 | 4 | 40 | 158 | 1 | 99 | 6.18e-12 | 62.8 |
Find 43 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGATAAGTTGCTTTCTT+TGG | 0.204312 | 4.4:-1745226 | None:intergenic |
| ATGATTCCGGTTCCGAATTA+AGG | 0.235495 | 4.4:-1745548 | None:intergenic |
| CTTTGACTGCTCAAATATTC+AGG | 0.261064 | 4.4:+1744719 | MS.gene058564:CDS |
| CAATCTCTATTCCTTTCTTT+TGG | 0.279770 | 4.4:-1744495 | None:intergenic |
| GTCCAAATCATCACTCAAAA+AGG | 0.343718 | 4.4:+1745442 | MS.gene058564:CDS |
| AAGCTCATTCTATTCATAGA+AGG | 0.351713 | 4.4:+1744637 | MS.gene058564:CDS |
| GATTTACAGATATTCCTATC+AGG | 0.363443 | 4.4:+1744665 | MS.gene058564:CDS |
| CCAACTTTAGACTTATAGAT+TGG | 0.365592 | 4.4:-1745180 | None:intergenic |
| TGATTTGGACCTTGGCTTTG+AGG | 0.368181 | 4.4:-1745429 | None:intergenic |
| TTGAGTGATGATTTGGACCT+TGG | 0.380468 | 4.4:-1745437 | None:intergenic |
| TATGACTGATAACCTTAATT+CGG | 0.380930 | 4.4:+1745536 | MS.gene058564:CDS |
| GCTTCAGAAATAGATGATTC+CGG | 0.410307 | 4.4:-1745561 | None:intergenic |
| CAAAAGAAAGGAATAGAGAT+TGG | 0.426289 | 4.4:+1744496 | MS.gene058564:CDS |
| CTTACATATCGAATAAAGAT+AGG | 0.448689 | 4.4:+1745133 | MS.gene058564:CDS |
| TGATAACCTTAATTCGGAAC+CGG | 0.455008 | 4.4:+1745542 | MS.gene058564:CDS |
| CATAGTAAAGTCAATAGCTT+CGG | 0.480348 | 4.4:-1745517 | None:intergenic |
| ATGGCGGAAAACATCCTGAT+AGG | 0.486299 | 4.4:-1744679 | None:intergenic |
| GCTCTTATGAATAGTAGCTC+TGG | 0.499499 | 4.4:+1744525 | MS.gene058564:CDS |
| GACTTATAGATTGGAGGCCG+AGG | 0.504759 | 4.4:-1745171 | None:intergenic |
| ACTTTAGACTTATAGATTGG+AGG | 0.508990 | 4.4:-1745177 | None:intergenic |
| TTATCAGCTAGATTTAAGTC+AGG | 0.519647 | 4.4:+1745240 | MS.gene058564:CDS |
| CCAATCTATAAGTCTAAAGT+TGG | 0.523454 | 4.4:+1745180 | MS.gene058564:CDS |
| AGGATCAATCACCAAAAGAA+AGG | 0.527569 | 4.4:+1744484 | MS.gene058564:CDS |
| TGAAGCTGAGCCATGTGGGC+GGG | 0.537407 | 4.4:+1745578 | MS.gene058564:CDS |
| AGTGCTTCTGCAGCTCAGAA+TGG | 0.561001 | 4.4:-1744698 | None:intergenic |
| GGCAGTACATGCGAAGAATG+TGG | 0.561872 | 4.4:+1745264 | MS.gene058564:CDS |
| TAAGAAACGAAAACAAAGAC+AGG | 0.585409 | 4.4:-1745651 | None:intergenic |
| CTGAAGCTGAGCCATGTGGG+CGG | 0.592373 | 4.4:+1745577 | MS.gene058564:CDS |
| GCAGTACATGCGAAGAATGT+GGG | 0.596786 | 4.4:+1745265 | MS.gene058564:CDS |
| TCAGCTAGATTTAAGTCAGG+AGG | 0.597898 | 4.4:+1745243 | MS.gene058564:CDS |
| CTGGTGCTCAATTATATGCA+AGG | 0.606595 | 4.4:+1745314 | MS.gene058564:CDS |
| GTTGACTCTTTCAACCAAAG+TGG | 0.608258 | 4.4:+1745471 | MS.gene058564:CDS |
| GGATTGTGCATCTCAAACCT+CGG | 0.608993 | 4.4:+1745154 | MS.gene058564:CDS |
| TACAAGATGAGCATAGTCGC+TGG | 0.613510 | 4.4:+1745295 | MS.gene058564:CDS |
| ATAGGGGAGCCTCAAAGCCA+AGG | 0.624380 | 4.4:+1745420 | MS.gene058564:CDS |
| TTTCTGAAGCTGAGCCATGT+GGG | 0.625236 | 4.4:+1745574 | MS.gene058564:CDS |
| ACAACTTCAACCCGCCCACA+TGG | 0.636500 | 4.4:-1745588 | None:intergenic |
| AAAGACAGGCCTCTGAGGAG+TGG | 0.638363 | 4.4:-1745637 | None:intergenic |
| TGATGGTGCATCTACCACTT+TGG | 0.640528 | 4.4:-1745485 | None:intergenic |
| GCTTCTGCAGCTCAGAATGG+CGG | 0.645960 | 4.4:-1744695 | None:intergenic |
| ATTGTGCTGTTAGATTCTGT+AGG | 0.654870 | 4.4:+1744604 | MS.gene058564:CDS |
| ATTTCTGAAGCTGAGCCATG+TGG | 0.657682 | 4.4:+1745573 | MS.gene058564:CDS |
| AAAACAAAGACAGGCCTCTG+AGG | 0.661748 | 4.4:-1745642 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATATGAATCAAA+TGG | - | chr4.4:1744188-1744207 | None:intergenic | 10.0% |
| !!! | TTTATTTTTGTTTTAAATGT+TGG | + | chr4.4:1744200-1744219 | MS.gene058564:intron | 10.0% |
| !! | AATAAACACAATTTATTTCA+TGG | - | chr4.4:1744986-1745005 | None:intergenic | 15.0% |
| !! | TTATTCAATGTAATTTCAAT+AGG | - | chr4.4:1744920-1744939 | None:intergenic | 15.0% |
| !!! | ATTGAATAAATTTTCCATAT+GGG | + | chr4.4:1744931-1744950 | MS.gene058564:intron | 15.0% |
| !! | AATTTATAATTCAACCCATA+TGG | - | chr4.4:1744948-1744967 | None:intergenic | 20.0% |
| !! | AGTTTATGATCAATAACAAT+TGG | - | chr4.4:1745058-1745077 | None:intergenic | 20.0% |
| !!! | CATTGAATAAATTTTCCATA+TGG | + | chr4.4:1744930-1744949 | MS.gene058564:intron | 20.0% |
| !!! | TATTTTGAATATCTGAGATT+AGG | + | chr4.4:1744302-1744321 | MS.gene058564:intron | 20.0% |
| !!! | TGTTTTGATTTGTTTTAATC+TGG | + | chr4.4:1744845-1744864 | MS.gene058564:intron | 20.0% |
| ! | CAAAACTTTATAAGAATCCA+TGG | - | chr4.4:1744034-1744053 | None:intergenic | 25.0% |
| ! | CTTACATATCGAATAAAGAT+AGG | + | chr4.4:1745133-1745152 | MS.gene058564:CDS | 25.0% |
| ! | TATGACTGATAACCTTAATT+CGG | + | chr4.4:1745536-1745555 | MS.gene058564:CDS | 25.0% |
| !! | ACAAACATGCTCTTATTTAA+TGG | + | chr4.4:1745339-1745358 | MS.gene058564:intron | 25.0% |
| !! | CTGATTCTGAATTAAGTTTT+TGG | + | chr4.4:1744400-1744419 | MS.gene058564:intron | 25.0% |
| !!! | TCTGAATTAAGTTTTTGGTT+GGG | + | chr4.4:1744405-1744424 | MS.gene058564:intron | 25.0% |
| !!! | TTCTGAATTAAGTTTTTGGT+TGG | + | chr4.4:1744404-1744423 | MS.gene058564:intron | 25.0% |
| !!! | TTGATTTGTTTTAATCTGGT+TGG | + | chr4.4:1744849-1744868 | MS.gene058564:intron | 25.0% |
| !!! | TTTCTTTGGATTTTGATTCA+GGG | - | chr4.4:1745215-1745234 | None:intergenic | 25.0% |
| AACAAACAATGACAGTACAA+AGG | - | chr4.4:1745012-1745031 | None:intergenic | 30.0% | |
| AACGAAATCAGAATCAGAAT+AGG | - | chr4.4:1744065-1744084 | None:intergenic | 30.0% | |
| AAGCTCATTCTATTCATAGA+AGG | + | chr4.4:1744637-1744656 | MS.gene058564:CDS | 30.0% | |
| ACTTTAGACTTATAGATTGG+AGG | - | chr4.4:1745180-1745199 | None:intergenic | 30.0% | |
| CAAAAGAAAGGAATAGAGAT+TGG | + | chr4.4:1744496-1744515 | MS.gene058564:CDS | 30.0% | |
| CATAGTAAAGTCAATAGCTT+CGG | - | chr4.4:1745520-1745539 | None:intergenic | 30.0% | |
| CCAACTTTAGACTTATAGAT+TGG | - | chr4.4:1745183-1745202 | None:intergenic | 30.0% | |
| GAAATTTGCATGTGAAGATT+TGG | + | chr4.4:1744264-1744283 | MS.gene058564:intron | 30.0% | |
| GATAGACTTTAATGATCTGA+TGG | + | chr4.4:1744873-1744892 | MS.gene058564:intron | 30.0% | |
| GATTTACAGATATTCCTATC+AGG | + | chr4.4:1744665-1744684 | MS.gene058564:CDS | 30.0% | |
| TAAGAAACGAAAACAAAGAC+AGG | - | chr4.4:1745654-1745673 | None:intergenic | 30.0% | |
| TAAGAATCCATGGAAAAAAC+AGG | - | chr4.4:1744024-1744043 | None:intergenic | 30.0% | |
| TCAATAGGTTCAACCATTAA+TGG | - | chr4.4:1744905-1744924 | None:intergenic | 30.0% | |
| TTATCAGCTAGATTTAAGTC+AGG | + | chr4.4:1745240-1745259 | MS.gene058564:CDS | 30.0% | |
| ! | CAATCTCTATTCCTTTCTTT+TGG | - | chr4.4:1744498-1744517 | None:intergenic | 30.0% |
| ! | CCAATCTATAAGTCTAAAGT+TGG | + | chr4.4:1745180-1745199 | MS.gene058564:CDS | 30.0% |
| ! | GAATATCTGAGATTAGGTTT+AGG | + | chr4.4:1744308-1744327 | MS.gene058564:intron | 30.0% |
| !! | GGTTCTTGAATTGATTTTGT+GGG | + | chr4.4:1744426-1744445 | MS.gene058564:intron | 30.0% |
| !!! | CTTTCTTTGGATTTTGATTC+AGG | - | chr4.4:1745216-1745235 | None:intergenic | 30.0% |
| !!! | TCAATTTCCTGTTTTTTCCA+TGG | + | chr4.4:1744014-1744033 | MS.gene058564:intron | 30.0% |
| !!! | TGAATAATGATGGATTTTGC+AGG | + | chr4.4:1744455-1744474 | MS.gene058564:intron | 30.0% |
| AGGATCAATCACCAAAAGAA+AGG | + | chr4.4:1744484-1744503 | MS.gene058564:CDS | 35.0% | |
| CGTACAATTGTTCCATGATT+TGG | + | chr4.4:1745106-1745125 | MS.gene058564:intron | 35.0% | |
| CTTTGACTGCTCAAATATTC+AGG | + | chr4.4:1744719-1744738 | MS.gene058564:CDS | 35.0% | |
| GCTTCAGAAATAGATGATTC+CGG | - | chr4.4:1745564-1745583 | None:intergenic | 35.0% | |
| GTCCAAATCATCACTCAAAA+AGG | + | chr4.4:1745442-1745461 | MS.gene058564:CDS | 35.0% | |
| TATGTAAGTCTGCCAAATCA+TGG | - | chr4.4:1745121-1745140 | None:intergenic | 35.0% | |
| TGATAACCTTAATTCGGAAC+CGG | + | chr4.4:1745542-1745561 | MS.gene058564:CDS | 35.0% | |
| TGGGTACTACTGAATAATGA+TGG | + | chr4.4:1744445-1744464 | MS.gene058564:intron | 35.0% | |
| ! | AAGTCAATAGCTTCGGTTTT+TGG | - | chr4.4:1745513-1745532 | None:intergenic | 35.0% |
| ! | AGCTGATAAGTTGCTTTCTT+TGG | - | chr4.4:1745229-1745248 | None:intergenic | 35.0% |
| ! | ATCATGTGCTGTTGTTAGAT+AGG | + | chr4.4:1745402-1745421 | MS.gene058564:intron | 35.0% |
| ! | ATTGTGCTGTTAGATTCTGT+AGG | + | chr4.4:1744604-1744623 | MS.gene058564:CDS | 35.0% |
| ! | CTGATGGACATTACCATTAA+TGG | + | chr4.4:1744889-1744908 | MS.gene058564:intron | 35.0% |
| ! | TCATGTGCTGTTGTTAGATA+GGG | + | chr4.4:1745403-1745422 | MS.gene058564:intron | 35.0% |
| !! | GGGTTCTTGAATTGATTTTG+TGG | + | chr4.4:1744425-1744444 | MS.gene058564:intron | 35.0% |
| !!! | ATAATGATGGATTTTGCAGG+TGG | + | chr4.4:1744458-1744477 | MS.gene058564:intron | 35.0% |
| !!! | CTCCTTTTTGAGTGATGATT+TGG | - | chr4.4:1745447-1745466 | None:intergenic | 35.0% |
| !!! | TAATGATGGATTTTGCAGGT+GGG | + | chr4.4:1744459-1744478 | MS.gene058564:intron | 35.0% |
| ATGATTCCGGTTCCGAATTA+AGG | - | chr4.4:1745551-1745570 | None:intergenic | 40.0% | |
| CTGGTGCTCAATTATATGCA+AGG | + | chr4.4:1745314-1745333 | MS.gene058564:CDS | 40.0% | |
| GCTCTTATGAATAGTAGCTC+TGG | + | chr4.4:1744525-1744544 | MS.gene058564:CDS | 40.0% | |
| TCAGCTAGATTTAAGTCAGG+AGG | + | chr4.4:1745243-1745262 | MS.gene058564:CDS | 40.0% | |
| ! | CATGTGCTGTTGTTAGATAG+GGG | + | chr4.4:1745404-1745423 | MS.gene058564:intron | 40.0% |
| ! | GTTGACTCTTTCAACCAAAG+TGG | + | chr4.4:1745471-1745490 | MS.gene058564:CDS | 40.0% |
| ! | TTGAGTGATGATTTGGACCT+TGG | - | chr4.4:1745440-1745459 | None:intergenic | 40.0% |
| !!! | AATGATGGATTTTGCAGGTG+GGG | + | chr4.4:1744460-1744479 | MS.gene058564:intron | 40.0% |
| AAAACAAAGACAGGCCTCTG+AGG | - | chr4.4:1745645-1745664 | None:intergenic | 45.0% | |
| GCAGTACATGCGAAGAATGT+GGG | + | chr4.4:1745265-1745284 | MS.gene058564:CDS | 45.0% | |
| GGATTGTGCATCTCAAACCT+CGG | + | chr4.4:1745154-1745173 | MS.gene058564:CDS | 45.0% | |
| TACAAGATGAGCATAGTCGC+TGG | + | chr4.4:1745295-1745314 | MS.gene058564:CDS | 45.0% | |
| ! | ATGGCGGAAAACATCCTGAT+AGG | - | chr4.4:1744682-1744701 | None:intergenic | 45.0% |
| ! | TCTGAGGAGTGGTTTTTCTC+GGG | - | chr4.4:1745629-1745648 | None:intergenic | 45.0% |
| ! | TGATGGTGCATCTACCACTT+TGG | - | chr4.4:1745488-1745507 | None:intergenic | 45.0% |
| !! | ATTTCTGAAGCTGAGCCATG+TGG | + | chr4.4:1745573-1745592 | MS.gene058564:CDS | 45.0% |
| !! | CTCTGAGGAGTGGTTTTTCT+CGG | - | chr4.4:1745630-1745649 | None:intergenic | 45.0% |
| !! | TGATTTGGACCTTGGCTTTG+AGG | - | chr4.4:1745432-1745451 | None:intergenic | 45.0% |
| !! | TTTCTGAAGCTGAGCCATGT+GGG | + | chr4.4:1745574-1745593 | MS.gene058564:CDS | 45.0% |
| !!! | AGCTTCGGTTTTTGGAGTGA+TGG | - | chr4.4:1745505-1745524 | None:intergenic | 45.0% |
| AGTGCTTCTGCAGCTCAGAA+TGG | - | chr4.4:1744701-1744720 | None:intergenic | 50.0% | |
| CGAGAAAAACCACTCCTCAG+AGG | + | chr4.4:1745628-1745647 | MS.gene058564:CDS | 50.0% | |
| GACTTATAGATTGGAGGCCG+AGG | - | chr4.4:1745174-1745193 | None:intergenic | 50.0% | |
| GGCAGTACATGCGAAGAATG+TGG | + | chr4.4:1745264-1745283 | MS.gene058564:CDS | 50.0% | |
| ! | ATGGATTTTGCAGGTGGGGA+AGG | + | chr4.4:1744464-1744483 | MS.gene058564:intron | 50.0% |
| ACAACTTCAACCCGCCCACA+TGG | - | chr4.4:1745591-1745610 | None:intergenic | 55.0% | |
| ATAGGGGAGCCTCAAAGCCA+AGG | + | chr4.4:1745420-1745439 | MS.gene058564:CDS | 55.0% | |
| GCTTCTGCAGCTCAGAATGG+CGG | - | chr4.4:1744698-1744717 | None:intergenic | 55.0% | |
| ! | AAAGACAGGCCTCTGAGGAG+TGG | - | chr4.4:1745640-1745659 | None:intergenic | 55.0% |
| CTGAAGCTGAGCCATGTGGG+CGG | + | chr4.4:1745577-1745596 | MS.gene058564:CDS | 60.0% | |
| TGAAGCTGAGCCATGTGGGC+GGG | + | chr4.4:1745578-1745597 | MS.gene058564:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 1743997 | 1745674 | 1743997 | ID=MS.gene058564 |
| chr4.4 | mRNA | 1743997 | 1745674 | 1743997 | ID=MS.gene058564.t1;Parent=MS.gene058564 |
| chr4.4 | exon | 1743997 | 1743999 | 1743997 | ID=MS.gene058564.t1.exon1;Parent=MS.gene058564.t1 |
| chr4.4 | CDS | 1743997 | 1743999 | 1743997 | ID=cds.MS.gene058564.t1;Parent=MS.gene058564.t1 |
| chr4.4 | exon | 1744477 | 1744740 | 1744477 | ID=MS.gene058564.t1.exon2;Parent=MS.gene058564.t1 |
| chr4.4 | CDS | 1744477 | 1744740 | 1744477 | ID=cds.MS.gene058564.t1;Parent=MS.gene058564.t1 |
| chr4.4 | exon | 1745132 | 1745335 | 1745132 | ID=MS.gene058564.t1.exon3;Parent=MS.gene058564.t1 |
| chr4.4 | CDS | 1745132 | 1745335 | 1745132 | ID=cds.MS.gene058564.t1;Parent=MS.gene058564.t1 |
| chr4.4 | exon | 1745420 | 1745674 | 1745420 | ID=MS.gene058564.t1.exon4;Parent=MS.gene058564.t1 |
| chr4.4 | CDS | 1745420 | 1745674 | 1745420 | ID=cds.MS.gene058564.t1;Parent=MS.gene058564.t1 |
| Gene Sequence |
| Protein sequence |
