Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058583.t1 | XP_024629356.1 | 51.2 | 660 | 93 | 2 | 1 | 432 | 1 | 659 | 3.20E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058583.t1 | Q9SWG3 | 25.2 | 246 | 178 | 2 | 157 | 402 | 426 | 665 | 8.7e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058583.t1 | A0A396JHA3 | 49.0 | 594 | 74 | 2 | 1 | 366 | 1 | 593 | 2.2e-143 | 518.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene058583.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058583.t1 | MTR_5g039760 | 64.563 | 206 | 44 | 3 | 1 | 201 | 1 | 182 | 3.14e-83 | 254 |
| MS.gene058583.t1 | MTR_7g074790 | 59.783 | 184 | 52 | 3 | 1 | 181 | 1 | 165 | 3.58e-66 | 211 |
| MS.gene058583.t1 | MTR_7g061980 | 68.333 | 120 | 37 | 1 | 1 | 120 | 1 | 119 | 3.03e-54 | 176 |
| MS.gene058583.t1 | MTR_0402s0040 | 34.387 | 253 | 141 | 8 | 10 | 245 | 26 | 270 | 1.46e-28 | 117 |
| MS.gene058583.t1 | MTR_3g058090 | 47.863 | 117 | 37 | 2 | 316 | 432 | 5 | 97 | 2.96e-24 | 97.1 |
| MS.gene058583.t1 | MTR_4g069880 | 61.905 | 63 | 24 | 0 | 1 | 63 | 1 | 63 | 1.32e-21 | 88.6 |
| MS.gene058583.t1 | MTR_4g102720 | 30.952 | 168 | 81 | 3 | 7 | 174 | 4 | 136 | 2.31e-21 | 92.4 |
| MS.gene058583.t1 | MTR_2g099430 | 47.191 | 89 | 44 | 3 | 33 | 120 | 26 | 112 | 8.48e-17 | 76.6 |
| MS.gene058583.t1 | MTR_2g070590 | 40.952 | 105 | 59 | 3 | 10 | 112 | 17 | 120 | 3.60e-16 | 75.1 |
| MS.gene058583.t1 | MTR_5g015480 | 39.837 | 123 | 71 | 3 | 10 | 130 | 56 | 177 | 4.14e-16 | 78.2 |
| MS.gene058583.t1 | MTR_1g019850 | 36.000 | 125 | 72 | 3 | 3 | 126 | 63 | 180 | 8.24e-16 | 77.0 |
| MS.gene058583.t1 | MTR_6g017200 | 42.169 | 83 | 46 | 2 | 10 | 91 | 58 | 139 | 1.74e-13 | 68.2 |
| MS.gene058583.t1 | MTR_6g051425 | 27.778 | 162 | 109 | 3 | 12 | 167 | 19 | 178 | 1.01e-12 | 69.3 |
| MS.gene058583.t1 | MTR_7g113010 | 35.938 | 128 | 65 | 4 | 10 | 135 | 457 | 569 | 3.40e-11 | 65.5 |
| MS.gene058583.t1 | MTR_5g076070 | 29.299 | 157 | 109 | 2 | 13 | 167 | 56 | 212 | 7.30e-11 | 63.2 |
| MS.gene058583.t1 | MTR_5g045210 | 31.765 | 85 | 58 | 0 | 318 | 402 | 20 | 104 | 9.76e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058583.t1 | AT4G15090 | 25.620 | 242 | 174 | 2 | 157 | 398 | 426 | 661 | 5.56e-23 | 102 |
| MS.gene058583.t1 | AT4G15090 | 27.381 | 168 | 119 | 3 | 3 | 169 | 44 | 209 | 2.49e-12 | 69.3 |
| MS.gene058583.t1 | AT4G15090 | 25.620 | 242 | 174 | 2 | 157 | 398 | 426 | 661 | 5.56e-23 | 102 |
| MS.gene058583.t1 | AT4G15090 | 27.381 | 168 | 119 | 3 | 3 | 169 | 44 | 209 | 2.49e-12 | 69.3 |
| MS.gene058583.t1 | AT4G15090 | 25.620 | 242 | 174 | 2 | 157 | 398 | 426 | 661 | 5.56e-23 | 102 |
| MS.gene058583.t1 | AT4G15090 | 27.381 | 168 | 119 | 3 | 3 | 169 | 44 | 209 | 2.49e-12 | 69.3 |
| MS.gene058583.t1 | AT4G15090 | 25.620 | 242 | 174 | 2 | 157 | 398 | 426 | 661 | 5.56e-23 | 102 |
| MS.gene058583.t1 | AT4G15090 | 27.381 | 168 | 119 | 3 | 3 | 169 | 44 | 209 | 2.49e-12 | 69.3 |
| MS.gene058583.t1 | AT4G15090 | 25.620 | 242 | 174 | 2 | 157 | 398 | 426 | 661 | 5.56e-23 | 102 |
| MS.gene058583.t1 | AT4G15090 | 27.381 | 168 | 119 | 3 | 3 | 169 | 44 | 209 | 2.49e-12 | 69.3 |
| MS.gene058583.t1 | AT4G38170 | 28.333 | 240 | 162 | 6 | 180 | 415 | 238 | 471 | 9.86e-21 | 95.1 |
| MS.gene058583.t1 | AT4G38180 | 28.000 | 200 | 139 | 4 | 150 | 347 | 444 | 640 | 2.63e-20 | 94.4 |
| MS.gene058583.t1 | AT4G38180 | 32.727 | 165 | 108 | 2 | 6 | 167 | 69 | 233 | 5.71e-17 | 84.0 |
| MS.gene058583.t1 | AT3G22170 | 27.556 | 225 | 150 | 5 | 164 | 385 | 442 | 656 | 6.75e-20 | 93.2 |
| MS.gene058583.t1 | AT3G22170 | 27.556 | 225 | 150 | 5 | 164 | 385 | 442 | 656 | 6.75e-20 | 93.2 |
| MS.gene058583.t1 | AT5G18960 | 28.571 | 203 | 129 | 5 | 179 | 373 | 566 | 760 | 8.02e-18 | 86.7 |
| MS.gene058583.t1 | AT5G18960 | 39.423 | 104 | 48 | 2 | 9 | 111 | 42 | 131 | 8.80e-14 | 73.9 |
| MS.gene058583.t1 | AT5G18960 | 28.571 | 203 | 129 | 5 | 179 | 373 | 566 | 760 | 8.02e-18 | 86.7 |
| MS.gene058583.t1 | AT5G18960 | 39.423 | 104 | 48 | 2 | 9 | 111 | 42 | 131 | 8.80e-14 | 73.9 |
| MS.gene058583.t1 | AT3G06250 | 31.875 | 160 | 94 | 4 | 222 | 373 | 584 | 736 | 9.42e-18 | 86.3 |
| MS.gene058583.t1 | AT3G06250 | 38.462 | 104 | 49 | 2 | 9 | 111 | 27 | 116 | 2.76e-13 | 72.4 |
| MS.gene058583.t1 | AT3G06250 | 31.875 | 160 | 94 | 4 | 222 | 373 | 584 | 736 | 9.42e-18 | 86.3 |
| MS.gene058583.t1 | AT3G06250 | 38.462 | 104 | 49 | 2 | 9 | 111 | 27 | 116 | 2.76e-13 | 72.4 |
| MS.gene058583.t1 | AT3G06250 | 31.875 | 160 | 94 | 4 | 222 | 373 | 584 | 736 | 9.42e-18 | 86.3 |
| MS.gene058583.t1 | AT3G06250 | 38.462 | 104 | 49 | 2 | 9 | 111 | 27 | 116 | 2.76e-13 | 72.4 |
| MS.gene058583.t1 | AT1G76320 | 29.586 | 169 | 114 | 3 | 172 | 340 | 380 | 543 | 2.24e-16 | 82.0 |
| MS.gene058583.t1 | AT1G76320 | 29.586 | 169 | 114 | 3 | 172 | 340 | 380 | 543 | 2.26e-16 | 82.0 |
| MS.gene058583.t1 | AT1G76320 | 29.586 | 169 | 114 | 3 | 172 | 340 | 380 | 543 | 2.26e-16 | 82.0 |
| MS.gene058583.t1 | AT1G76320 | 29.586 | 169 | 114 | 3 | 172 | 340 | 380 | 543 | 3.27e-16 | 81.3 |
| MS.gene058583.t1 | AT4G19990 | 29.016 | 193 | 133 | 3 | 150 | 340 | 368 | 558 | 7.49e-15 | 77.4 |
| MS.gene058583.t1 | AT4G19990 | 29.016 | 193 | 133 | 3 | 150 | 340 | 368 | 558 | 7.49e-15 | 77.4 |
| MS.gene058583.t1 | AT4G19990 | 29.016 | 193 | 133 | 3 | 150 | 340 | 311 | 501 | 8.02e-15 | 77.0 |
| MS.gene058583.t1 | AT4G19990 | 29.016 | 193 | 133 | 3 | 150 | 340 | 368 | 558 | 8.11e-15 | 77.0 |
| MS.gene058583.t1 | AT4G19990 | 29.016 | 193 | 133 | 3 | 150 | 340 | 382 | 572 | 8.96e-15 | 77.0 |
| MS.gene058583.t1 | AT4G19990 | 29.143 | 175 | 121 | 2 | 168 | 340 | 385 | 558 | 1.07e-14 | 77.0 |
| MS.gene058583.t1 | AT4G19990 | 29.143 | 175 | 121 | 2 | 168 | 340 | 385 | 558 | 1.07e-14 | 77.0 |
| MS.gene058583.t1 | AT1G52520 | 24.793 | 242 | 169 | 5 | 107 | 339 | 399 | 636 | 3.26e-13 | 72.0 |
| MS.gene058583.t1 | AT1G80010 | 27.556 | 225 | 148 | 7 | 187 | 399 | 502 | 723 | 1.08e-12 | 70.5 |
| MS.gene058583.t1 | AT2G27110 | 27.273 | 187 | 131 | 3 | 200 | 385 | 438 | 620 | 6.40e-12 | 68.2 |
| MS.gene058583.t1 | AT2G27110 | 27.273 | 187 | 131 | 3 | 200 | 385 | 438 | 620 | 6.40e-12 | 68.2 |
| MS.gene058583.t1 | AT2G27110 | 27.273 | 187 | 131 | 3 | 200 | 385 | 293 | 475 | 7.92e-12 | 67.8 |
Find 67 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCTTAATCCAGAGTTAT+TGG | 0.153704 | 4.4:+1551984 | None:intergenic |
| CGAAATGATTGAAGAATTCT+AGG | 0.180160 | 4.4:+1551118 | None:intergenic |
| TGGAAGAGGCTAAACAATTT+TGG | 0.190934 | 4.4:-1552338 | MS.gene058583:CDS |
| TGGAATGGGATTTGATAATA+TGG | 0.291396 | 4.4:-1552358 | MS.gene058583:CDS |
| CTTCCATTGCTTGTAGTTGT+AGG | 0.300092 | 4.4:-1550822 | MS.gene058583:CDS |
| TTTCCTTAGTGATGACATAT+TGG | 0.316925 | 4.4:+1550887 | None:intergenic |
| GAGTCAGTTTCATGTCTAAT+TGG | 0.338630 | 4.4:+1550916 | None:intergenic |
| CTTTGAATTGAATGATGTTA+AGG | 0.355506 | 4.4:-1550755 | MS.gene058583:CDS |
| ATCTTGCACAATGCCATAAC+TGG | 0.367991 | 4.4:+1550690 | None:intergenic |
| CGGTGAAAACGGTGCTCGTC+CGG | 0.369800 | 4.4:-1550476 | MS.gene058583:CDS |
| TTCACCAATACTAACCCAAA+TGG | 0.399541 | 4.4:-1551010 | MS.gene058583:CDS |
| CTTCTTAAGATATACATATC+AGG | 0.401674 | 4.4:+1550727 | None:intergenic |
| ACAAGCATATGAAATTGATA+TGG | 0.409436 | 4.4:-1552007 | MS.gene058583:CDS |
| TATGGTTTACGTGTGGGCTT+CGG | 0.418417 | 4.4:-1552309 | MS.gene058583:CDS |
| AAGGAAGGGGTGAAGAATAC+AGG | 0.418578 | 4.4:-1552219 | MS.gene058583:CDS |
| ATGTAGGTTCGTTTGTTGTA+AGG | 0.422514 | 4.4:-1552238 | MS.gene058583:CDS |
| ATTCGATTTCTTAACAACTT+AGG | 0.424669 | 4.4:+1550640 | None:intergenic |
| GGATCAGAACTCATAATTGC+CGG | 0.442476 | 4.4:+1550457 | None:intergenic |
| AATTCTAGGATATCCACATT+TGG | 0.443045 | 4.4:+1551132 | None:intergenic |
| TTTCCCATTTGGGTTAGTAT+TGG | 0.448473 | 4.4:+1551006 | None:intergenic |
| TCAAATCCCATTCCAACCTC+TGG | 0.449329 | 4.4:+1552366 | None:intergenic |
| GGAATCTCGCGCACAAGCTA+TGG | 0.451664 | 4.4:-1550506 | MS.gene058583:CDS |
| ATTGATATGGCCAATAACTC+TGG | 0.454000 | 4.4:-1551994 | MS.gene058583:CDS |
| TGGCATCTACAAATGTTGAT+TGG | 0.468983 | 4.4:-1552392 | MS.gene058583:CDS |
| GGTTCGTTTGTTGTAAGGAA+GGG | 0.477120 | 4.4:-1552233 | MS.gene058583:CDS |
| CTTGCTTATGGTTTACGTGT+GGG | 0.490896 | 4.4:-1552315 | MS.gene058583:CDS |
| TCACCAATACTAACCCAAAT+GGG | 0.493652 | 4.4:-1551009 | MS.gene058583:CDS |
| TGGAAGCCAGAGGTTGGAAT+GGG | 0.504538 | 4.4:-1552372 | MS.gene058583:CDS |
| AGGTTCGTTTGTTGTAAGGA+AGG | 0.507670 | 4.4:-1552234 | MS.gene058583:CDS |
| CGAAGCATGTGTGTAGTCTC+TGG | 0.507970 | 4.4:+1552054 | None:intergenic |
| TGACATGCTAAAGAAAATGA+TGG | 0.509229 | 4.4:-1550527 | MS.gene058583:CDS |
| TTGAATCCCTTTGCTTGCAT+AGG | 0.513123 | 4.4:+1550436 | None:intergenic |
| ACACTTTCACGTTGTAAGAA+CGG | 0.515117 | 4.4:-1552129 | MS.gene058583:CDS |
| TGGACAAGGGAAGCCAGTTA+TGG | 0.522626 | 4.4:-1550703 | MS.gene058583:CDS |
| GTTCGTTTGTTGTAAGGAAG+GGG | 0.523718 | 4.4:-1552232 | MS.gene058583:CDS |
| TATGTTCATCTAGAAACTCA+TGG | 0.526110 | 4.4:+1552094 | None:intergenic |
| ATGGATAAGAACGGTGAAAA+CGG | 0.526574 | 4.4:-1550487 | MS.gene058583:CDS |
| GTTGATTGGAAGCCAGAGGT+TGG | 0.535516 | 4.4:-1552378 | MS.gene058583:CDS |
| GGGATTTGATAATATGGAAG+AGG | 0.538633 | 4.4:-1552352 | MS.gene058583:CDS |
| CAACTTATGAGCACACATGC+AGG | 0.539062 | 4.4:-1551949 | MS.gene058583:CDS |
| TTTATGGGAAATGAGGTTGA+AGG | 0.539484 | 4.4:-1550667 | MS.gene058583:CDS |
| CTTCCTACAACTACAAGCAA+TGG | 0.547623 | 4.4:+1550819 | None:intergenic |
| TTCTGATCCTATGCAAGCAA+AGG | 0.549891 | 4.4:-1550443 | MS.gene058583:CDS |
| TTGGAAGCCAGAGGTTGGAA+TGG | 0.550618 | 4.4:-1552373 | MS.gene058583:CDS |
| AATCCTCACATAAGCTTGCA+AGG | 0.551010 | 4.4:-1551047 | MS.gene058583:CDS |
| CTGATATGTATATCTTAAGA+AGG | 0.552468 | 4.4:-1550726 | MS.gene058583:CDS |
| GCTTGCTTATGGTTTACGTG+TGG | 0.553841 | 4.4:-1552316 | MS.gene058583:CDS |
| CACTGTTATCAACAAACTTG+AGG | 0.562499 | 4.4:+1550554 | None:intergenic |
| TCTGATCCTATGCAAGCAAA+GGG | 0.565167 | 4.4:-1550442 | MS.gene058583:CDS |
| CTCTAAGTTCATTAGAGCAG+CGG | 0.565189 | 4.4:-1550602 | MS.gene058583:CDS |
| TTGCCAATATGTCATCACTA+AGG | 0.566698 | 4.4:-1550890 | MS.gene058583:CDS |
| ATGAAGGAAGTGTTAACACT+TGG | 0.569898 | 4.4:-1551213 | MS.gene058583:intron |
| ACGTTGTAAGAACGGAAAGT+TGG | 0.570358 | 4.4:-1552121 | MS.gene058583:CDS |
| CAACCTTGCAAGCTTATGTG+AGG | 0.584735 | 4.4:+1551044 | None:intergenic |
| ATATCTTAAGAAGGTGGACA+AGG | 0.586063 | 4.4:-1550717 | MS.gene058583:CDS |
| AACTTATGAGCACACATGCA+GGG | 0.592671 | 4.4:-1551948 | MS.gene058583:CDS |
| ACGGTACTGTAACATCATGT+AGG | 0.593717 | 4.4:-1552254 | MS.gene058583:CDS |
| GTCTTGTATGCAACCAAATG+TGG | 0.594828 | 4.4:-1551145 | MS.gene058583:CDS |
| GTGAAAGTGTAATTCTTGCA+AGG | 0.603620 | 4.4:+1552142 | None:intergenic |
| TAATGTAGAATTTACAGTGA+AGG | 0.609138 | 4.4:-1551917 | MS.gene058583:CDS |
| ATATGTATATCTTAAGAAGG+TGG | 0.611193 | 4.4:-1550723 | MS.gene058583:CDS |
| AAATGTTGATTGGAAGCCAG+AGG | 0.615417 | 4.4:-1552382 | MS.gene058583:CDS |
| TTTACAAACAGGAAGAAAGA+CGG | 0.633119 | 4.4:-1552273 | MS.gene058583:CDS |
| TGTGCTCATAAGTTGAAATG+TGG | 0.654667 | 4.4:+1551957 | None:intergenic |
| AGGAAGGGGTGAAGAATACA+GGG | 0.660155 | 4.4:-1552218 | MS.gene058583:CDS |
| TATCTTAAGAAGGTGGACAA+GGG | 0.672366 | 4.4:-1550716 | MS.gene058583:CDS |
| GCACAAGCTATGGATAAGAA+CGG | 0.681477 | 4.4:-1550496 | MS.gene058583:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATTTGTGATAAATCT+TGG | - | chr4.4:1551542-1551561 | MS.gene058583:intron | 15.0% |
| !! | TGAAAAAAGAAAAAGAAGTA+TGG | - | chr4.4:1550947-1550966 | MS.gene058583:CDS | 20.0% |
| !!! | AACAAATTACAAATGTGTTT+TGG | - | chr4.4:1551063-1551082 | MS.gene058583:CDS | 20.0% |
| ! | AAAAAAAACAAGTGGTCTAT+TGG | + | chr4.4:1551168-1551187 | None:intergenic | 25.0% |
| ! | ACAAGCATATGAAATTGATA+TGG | - | chr4.4:1550815-1550834 | MS.gene058583:CDS | 25.0% |
| ! | ACTTATGGGCTTAAAAAAAA+TGG | - | chr4.4:1551574-1551593 | MS.gene058583:intron | 25.0% |
| ! | AGACAATTGAGTCATTTAAA+TGG | - | chr4.4:1551249-1551268 | MS.gene058583:intron | 25.0% |
| ! | ATATGTATATCTTAAGAAGG+TGG | - | chr4.4:1552099-1552118 | MS.gene058583:CDS | 25.0% |
| ! | ATTCGATTTCTTAACAACTT+AGG | + | chr4.4:1552185-1552204 | None:intergenic | 25.0% |
| ! | CTGATATGTATATCTTAAGA+AGG | - | chr4.4:1552096-1552115 | MS.gene058583:CDS | 25.0% |
| ! | CTTATGGGCTTAAAAAAAAT+GGG | - | chr4.4:1551575-1551594 | MS.gene058583:intron | 25.0% |
| ! | CTTCTTAAGATATACATATC+AGG | + | chr4.4:1552098-1552117 | None:intergenic | 25.0% |
| ! | CTTTGAATTGAATGATGTTA+AGG | - | chr4.4:1552067-1552086 | MS.gene058583:CDS | 25.0% |
| ! | TAATGTAGAATTTACAGTGA+AGG | - | chr4.4:1550905-1550924 | MS.gene058583:CDS | 25.0% |
| !! | ATATTTTCAACGACAATTGT+TGG | - | chr4.4:1550998-1551017 | MS.gene058583:CDS | 25.0% |
| AAAATGGAGTCAAACATCTT+GGG | - | chr4.4:1551410-1551429 | MS.gene058583:intron | 30.0% | |
| AAATGATCGAACCTCTATAA+TGG | + | chr4.4:1551205-1551224 | None:intergenic | 30.0% | |
| CCAGAAGAAAAAAAAACAAG+TGG | + | chr4.4:1551176-1551195 | None:intergenic | 30.0% | |
| CGAAATGATTGAAGAATTCT+AGG | + | chr4.4:1551707-1551726 | None:intergenic | 30.0% | |
| TATGTTCATCTAGAAACTCA+TGG | + | chr4.4:1550731-1550750 | None:intergenic | 30.0% | |
| TGACATGCTAAAGAAAATGA+TGG | - | chr4.4:1552295-1552314 | MS.gene058583:CDS | 30.0% | |
| TTTACAAACAGGAAGAAAGA+CGG | - | chr4.4:1550549-1550568 | MS.gene058583:CDS | 30.0% | |
| TTTCCTTAGTGATGACATAT+TGG | + | chr4.4:1551938-1551957 | None:intergenic | 30.0% | |
| ! | ATTTTGGATTACGGGTATTT+TGG | - | chr4.4:1551101-1551120 | MS.gene058583:CDS | 30.0% |
| ! | TATAGAGGTTCGATCATTTT+TGG | - | chr4.4:1551206-1551225 | MS.gene058583:CDS | 30.0% |
| ! | TGGAATGGGATTTGATAATA+TGG | - | chr4.4:1550464-1550483 | MS.gene058583:CDS | 30.0% |
| ! | TGTGTATACTTTTCCCATTT+GGG | + | chr4.4:1551829-1551848 | None:intergenic | 30.0% |
| ! | TTAGAGTACGTTTTACAAAC+AGG | - | chr4.4:1550538-1550557 | MS.gene058583:CDS | 30.0% |
| !! | AATTCTAGGATATCCACATT+TGG | + | chr4.4:1551693-1551712 | None:intergenic | 30.0% |
| !! | CATCAGATTTTGAGAAACTT+TGG | - | chr4.4:1551500-1551519 | MS.gene058583:intron | 30.0% |
| !!! | AAACAATTTTGGCTTGCTTA+TGG | - | chr4.4:1550495-1550514 | MS.gene058583:CDS | 30.0% |
| !!! | CCACTTGTTTTTTTTTCTTC+TGG | - | chr4.4:1551173-1551192 | MS.gene058583:CDS | 30.0% |
| !!! | TCTGGTTTTAACCATTATAG+AGG | - | chr4.4:1551191-1551210 | MS.gene058583:CDS | 30.0% |
| ACACTTTCACGTTGTAAGAA+CGG | - | chr4.4:1550693-1550712 | MS.gene058583:CDS | 35.0% | |
| ATATCTTAAGAAGGTGGACA+AGG | - | chr4.4:1552105-1552124 | MS.gene058583:CDS | 35.0% | |
| ATCACTAAGGAAAAACACGA+AGG | - | chr4.4:1551945-1551964 | MS.gene058583:CDS | 35.0% | |
| ATGGATAAGAACGGTGAAAA+CGG | - | chr4.4:1552335-1552354 | MS.gene058583:CDS | 35.0% | |
| ATGGGCTTAAAAAAAATGGG+TGG | - | chr4.4:1551578-1551597 | MS.gene058583:intron | 35.0% | |
| ATTGATATGGCCAATAACTC+TGG | - | chr4.4:1550828-1550847 | MS.gene058583:CDS | 35.0% | |
| CAAAATGGAGTCAAACATCT+TGG | - | chr4.4:1551409-1551428 | MS.gene058583:intron | 35.0% | |
| CACTGTTATCAACAAACTTG+AGG | + | chr4.4:1552271-1552290 | None:intergenic | 35.0% | |
| CATCTGATATGCATGAAAGA+AGG | + | chr4.4:1551033-1551052 | None:intergenic | 35.0% | |
| CTGTCTTAATCCAGAGTTAT+TGG | + | chr4.4:1550841-1550860 | None:intergenic | 35.0% | |
| CTTCTTTCATGCATATCAGA+TGG | - | chr4.4:1551031-1551050 | MS.gene058583:CDS | 35.0% | |
| CTTGGATCAAGACAACTTAT+GGG | - | chr4.4:1551560-1551579 | MS.gene058583:intron | 35.0% | |
| GAGTCAGTTTCATGTCTAAT+TGG | + | chr4.4:1551909-1551928 | None:intergenic | 35.0% | |
| GGGAACAAAAATGCATATGA+AGG | - | chr4.4:1550624-1550643 | MS.gene058583:CDS | 35.0% | |
| TATCTTAAGAAGGTGGACAA+GGG | - | chr4.4:1552106-1552125 | MS.gene058583:CDS | 35.0% | |
| TCACCAATACTAACCCAAAT+GGG | - | chr4.4:1551813-1551832 | MS.gene058583:intron | 35.0% | |
| TCTTGGATCAAGACAACTTA+TGG | - | chr4.4:1551559-1551578 | MS.gene058583:intron | 35.0% | |
| TGGCATCTACAAATGTTGAT+TGG | - | chr4.4:1550430-1550449 | MS.gene058583:CDS | 35.0% | |
| TTCACCAATACTAACCCAAA+TGG | - | chr4.4:1551812-1551831 | MS.gene058583:intron | 35.0% | |
| TTGCCAATATGTCATCACTA+AGG | - | chr4.4:1551932-1551951 | MS.gene058583:CDS | 35.0% | |
| TTTATGGGAAATGAGGTTGA+AGG | - | chr4.4:1552155-1552174 | MS.gene058583:CDS | 35.0% | |
| ! | ACATGGCACTTGTTACAAAA+TGG | - | chr4.4:1551394-1551413 | MS.gene058583:intron | 35.0% |
| ! | AGAAAAAGAAGTATGGCGTA+TGG | - | chr4.4:1550954-1550973 | MS.gene058583:CDS | 35.0% |
| ! | CACGTATGATTTTGGATTAC+GGG | - | chr4.4:1551093-1551112 | MS.gene058583:CDS | 35.0% |
| ! | GCAAGATTTTATGGGAAATG+AGG | - | chr4.4:1552148-1552167 | MS.gene058583:CDS | 35.0% |
| ! | GCACGTATGATTTTGGATTA+CGG | - | chr4.4:1551092-1551111 | MS.gene058583:CDS | 35.0% |
| ! | GGCATTGTGCAAGATTTTAT+GGG | - | chr4.4:1552140-1552159 | MS.gene058583:CDS | 35.0% |
| ! | GGGATTTGATAATATGGAAG+AGG | - | chr4.4:1550470-1550489 | MS.gene058583:CDS | 35.0% |
| ! | GTGAAAGTGTAATTCTTGCA+AGG | + | chr4.4:1550683-1550702 | None:intergenic | 35.0% |
| ! | GTGTGTATACTTTTCCCATT+TGG | + | chr4.4:1551830-1551849 | None:intergenic | 35.0% |
| ! | TGGAAGAGGCTAAACAATTT+TGG | - | chr4.4:1550484-1550503 | MS.gene058583:CDS | 35.0% |
| ! | TGGCATTGTGCAAGATTTTA+TGG | - | chr4.4:1552139-1552158 | MS.gene058583:CDS | 35.0% |
| ! | TGTGCTCATAAGTTGAAATG+TGG | + | chr4.4:1550868-1550887 | None:intergenic | 35.0% |
| !! | ATGAAGGAAGTGTTAACACT+TGG | - | chr4.4:1551609-1551628 | MS.gene058583:intron | 35.0% |
| !! | ATGTAGGTTCGTTTGTTGTA+AGG | - | chr4.4:1550584-1550603 | MS.gene058583:CDS | 35.0% |
| !! | TTTCCCATTTGGGTTAGTAT+TGG | + | chr4.4:1551819-1551838 | None:intergenic | 35.0% |
| AACTTATGAGCACACATGCA+GGG | - | chr4.4:1550874-1550893 | MS.gene058583:CDS | 40.0% | |
| AATCCTCACATAAGCTTGCA+AGG | - | chr4.4:1551775-1551794 | MS.gene058583:intron | 40.0% | |
| ACATCTTGGGAACTTGATGA+AGG | - | chr4.4:1551423-1551442 | MS.gene058583:intron | 40.0% | |
| ACGGTACTGTAACATCATGT+AGG | - | chr4.4:1550568-1550587 | MS.gene058583:CDS | 40.0% | |
| ACGTTGTAAGAACGGAAAGT+TGG | - | chr4.4:1550701-1550720 | MS.gene058583:CDS | 40.0% | |
| AGGAAAAACACGAAGGATCT+TGG | - | chr4.4:1551952-1551971 | MS.gene058583:CDS | 40.0% | |
| ATCTTGCACAATGCCATAAC+TGG | + | chr4.4:1552135-1552154 | None:intergenic | 40.0% | |
| CACTGACCAAGATCAATCAA+TGG | - | chr4.4:1551324-1551343 | MS.gene058583:intron | 40.0% | |
| CATCTTGGGAACTTGATGAA+GGG | - | chr4.4:1551424-1551443 | MS.gene058583:intron | 40.0% | |
| CTCTAAGTTCATTAGAGCAG+CGG | - | chr4.4:1552220-1552239 | MS.gene058583:CDS | 40.0% | |
| CTTCCATTGCTTGTAGTTGT+AGG | - | chr4.4:1552000-1552019 | MS.gene058583:CDS | 40.0% | |
| CTTCCTACAACTACAAGCAA+TGG | + | chr4.4:1552006-1552025 | None:intergenic | 40.0% | |
| CTTGCTTATGGTTTACGTGT+GGG | - | chr4.4:1550507-1550526 | MS.gene058583:CDS | 40.0% | |
| GCACAAGCTATGGATAAGAA+CGG | - | chr4.4:1552326-1552345 | MS.gene058583:CDS | 40.0% | |
| GGATCAGAACTCATAATTGC+CGG | + | chr4.4:1552368-1552387 | None:intergenic | 40.0% | |
| GTCTTGTATGCAACCAAATG+TGG | - | chr4.4:1551677-1551696 | MS.gene058583:intron | 40.0% | |
| TCTGATCCTATGCAAGCAAA+GGG | - | chr4.4:1552380-1552399 | MS.gene058583:CDS | 40.0% | |
| TTCTGATCCTATGCAAGCAA+AGG | - | chr4.4:1552379-1552398 | MS.gene058583:CDS | 40.0% | |
| TTGAATCCCTTTGCTTGCAT+AGG | + | chr4.4:1552389-1552408 | None:intergenic | 40.0% | |
| ! | AAATGTTGATTGGAAGCCAG+AGG | - | chr4.4:1550440-1550459 | MS.gene058583:CDS | 40.0% |
| ! | CACTTGCCATTGATTGATCT+TGG | + | chr4.4:1551333-1551352 | None:intergenic | 40.0% |
| ! | GTGTAGTCTCTGGATTTTGT+AGG | + | chr4.4:1550761-1550780 | None:intergenic | 40.0% |
| ! | GTGTGATGCACGTATGATTT+TGG | - | chr4.4:1551085-1551104 | MS.gene058583:CDS | 40.0% |
| ! | TCTCTGGATTTTGTAGGTCA+TGG | + | chr4.4:1550755-1550774 | None:intergenic | 40.0% |
| !! | AGAGGTTCGATCATTTTTGG+TGG | - | chr4.4:1551209-1551228 | MS.gene058583:CDS | 40.0% |
| !! | AGGTTCGTTTGTTGTAAGGA+AGG | - | chr4.4:1550588-1550607 | MS.gene058583:CDS | 40.0% |
| !! | GGTTCGTTTGTTGTAAGGAA+GGG | - | chr4.4:1550589-1550608 | MS.gene058583:CDS | 40.0% |
| !! | GTTCGTTTGTTGTAAGGAAG+GGG | - | chr4.4:1550590-1550609 | MS.gene058583:CDS | 40.0% |
| AAACAAGTGGTCTATTGGCG+TGG | + | chr4.4:1551163-1551182 | None:intergenic | 45.0% | |
| AAGGAAGGGGTGAAGAATAC+AGG | - | chr4.4:1550603-1550622 | MS.gene058583:CDS | 45.0% | |
| AGGAAGGGGTGAAGAATACA+GGG | - | chr4.4:1550604-1550623 | MS.gene058583:CDS | 45.0% | |
| AGTATGGCGTATGGTGAGAT+TGG | - | chr4.4:1550963-1550982 | MS.gene058583:CDS | 45.0% | |
| AGTGCCATGTGCATAAACCA+TGG | + | chr4.4:1551384-1551403 | None:intergenic | 45.0% | |
| ATGGGTGGCGTGTTATATGA+AGG | - | chr4.4:1551593-1551612 | MS.gene058583:intron | 45.0% | |
| CAACCTTGCAAGCTTATGTG+AGG | + | chr4.4:1551781-1551800 | None:intergenic | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | - | chr4.4:1550873-1550892 | MS.gene058583:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+AGG | + | chr4.4:1551373-1551392 | None:intergenic | 45.0% | |
| CTCACCATGGTTTATGCACA+TGG | - | chr4.4:1551377-1551396 | MS.gene058583:intron | 45.0% | |
| GCTTGCTTATGGTTTACGTG+TGG | - | chr4.4:1550506-1550525 | MS.gene058583:CDS | 45.0% | |
| TATGGTTTACGTGTGGGCTT+CGG | - | chr4.4:1550513-1550532 | MS.gene058583:CDS | 45.0% | |
| TCAAATCCCATTCCAACCTC+TGG | + | chr4.4:1550459-1550478 | None:intergenic | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | + | chr4.4:1551313-1551332 | None:intergenic | 45.0% | |
| AAGTGGTCTATTGGCGTGGT+TGG | + | chr4.4:1551159-1551178 | None:intergenic | 50.0% | |
| CGAAGCATGTGTGTAGTCTC+TGG | + | chr4.4:1550771-1550790 | None:intergenic | 50.0% | |
| CTTGGGAACTTGATGAAGGG+AGG | - | chr4.4:1551427-1551446 | MS.gene058583:intron | 50.0% | |
| GTTGATTGGAAGCCAGAGGT+TGG | - | chr4.4:1550444-1550463 | MS.gene058583:CDS | 50.0% | |
| TGGAAGCCAGAGGTTGGAAT+GGG | - | chr4.4:1550450-1550469 | MS.gene058583:CDS | 50.0% | |
| TGGACAAGGGAAGCCAGTTA+TGG | - | chr4.4:1552119-1552138 | MS.gene058583:CDS | 50.0% | |
| TTGGAAGCCAGAGGTTGGAA+TGG | - | chr4.4:1550449-1550468 | MS.gene058583:CDS | 50.0% | |
| GGAATCTCGCGCACAAGCTA+TGG | - | chr4.4:1552316-1552335 | MS.gene058583:CDS | 55.0% | |
| GTGATGCCTGAGACTCACCA+TGG | - | chr4.4:1551364-1551383 | MS.gene058583:intron | 55.0% | |
| ! | GGCGTGGTTGGTGCAATATG+TGG | + | chr4.4:1551147-1551166 | None:intergenic | 55.0% |
| CGGTGAAAACGGTGCTCGTC+CGG | - | chr4.4:1552346-1552365 | MS.gene058583:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 1550429 | 1552415 | 1550429 | ID=MS.gene058583 |
| chr4.4 | mRNA | 1550429 | 1552415 | 1550429 | ID=MS.gene058583.t1;Parent=MS.gene058583 |
| chr4.4 | exon | 1551915 | 1552415 | 1551915 | ID=MS.gene058583.t1.exon1;Parent=MS.gene058583.t1 |
| chr4.4 | CDS | 1551915 | 1552415 | 1551915 | ID=cds.MS.gene058583.t1;Parent=MS.gene058583.t1 |
| chr4.4 | exon | 1550429 | 1551229 | 1550429 | ID=MS.gene058583.t1.exon2;Parent=MS.gene058583.t1 |
| chr4.4 | CDS | 1550429 | 1551229 | 1550429 | ID=cds.MS.gene058583.t1;Parent=MS.gene058583.t1 |
| Gene Sequence |
| Protein sequence |
