Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058764.t1 | XP_003598025.2 | 77.4 | 523 | 115 | 2 | 1 | 522 | 20 | 540 | 1.10E-232 | 815.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058764.t1 | Q8L3W1 | 27.8 | 338 | 155 | 5 | 271 | 522 | 6 | 340 | 9.9e-28 | 126.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058764.t1 | G7IYE4 | 77.4 | 523 | 115 | 2 | 1 | 522 | 20 | 540 | 8.2e-233 | 815.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene058764.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058764.t1 | MTR_3g005420 | 77.438 | 523 | 115 | 2 | 1 | 522 | 20 | 540 | 0.0 | 823 |
MS.gene058764.t1 | MTR_3g005420 | 71.319 | 523 | 112 | 3 | 1 | 522 | 1 | 486 | 0.0 | 741 |
MS.gene058764.t1 | MTR_3g005440 | 79.684 | 443 | 55 | 3 | 37 | 478 | 34 | 442 | 0.0 | 700 |
MS.gene058764.t1 | MTR_3g005440 | 51.707 | 205 | 70 | 2 | 18 | 200 | 237 | 434 | 6.51e-59 | 202 |
MS.gene058764.t1 | MTR_3g005460 | 63.534 | 532 | 173 | 5 | 1 | 522 | 1 | 521 | 0.0 | 645 |
MS.gene058764.t1 | MTR_3g005495 | 57.796 | 481 | 166 | 8 | 38 | 516 | 28 | 473 | 0.0 | 520 |
MS.gene058764.t1 | MTR_3g005495 | 49.167 | 240 | 110 | 5 | 18 | 248 | 238 | 474 | 4.22e-61 | 208 |
MS.gene058764.t1 | MTR_3g005490 | 66.023 | 259 | 77 | 2 | 266 | 523 | 16 | 264 | 3.34e-119 | 352 |
MS.gene058764.t1 | MTR_3g005490 | 58.167 | 251 | 91 | 3 | 5 | 242 | 4 | 253 | 8.95e-89 | 274 |
MS.gene058764.t1 | MTR_5g070440 | 66.148 | 257 | 87 | 0 | 266 | 522 | 16 | 272 | 1.71e-116 | 345 |
MS.gene058764.t1 | MTR_5g070440 | 56.818 | 264 | 90 | 2 | 1 | 242 | 1 | 262 | 1.18e-92 | 284 |
MS.gene058764.t1 | MTR_3g005480 | 64.479 | 259 | 80 | 2 | 266 | 522 | 16 | 264 | 1.08e-115 | 343 |
MS.gene058764.t1 | MTR_3g005480 | 56.746 | 252 | 94 | 3 | 5 | 242 | 4 | 254 | 2.46e-84 | 262 |
MS.gene058764.t1 | MTR_3g098790 | 29.352 | 293 | 164 | 6 | 270 | 521 | 12 | 302 | 4.76e-28 | 114 |
MS.gene058764.t1 | MTR_3g098790 | 27.046 | 281 | 144 | 7 | 16 | 235 | 6 | 286 | 1.55e-19 | 90.1 |
MS.gene058764.t1 | MTR_1g015350 | 39.779 | 181 | 37 | 4 | 314 | 494 | 58 | 166 | 1.55e-26 | 106 |
MS.gene058764.t1 | MTR_1g015350 | 37.126 | 167 | 53 | 4 | 66 | 231 | 58 | 173 | 2.94e-20 | 88.6 |
MS.gene058764.t1 | MTR_8g103940 | 29.293 | 297 | 157 | 9 | 271 | 518 | 39 | 331 | 1.85e-26 | 113 |
MS.gene058764.t1 | MTR_8g103940 | 32.323 | 99 | 67 | 0 | 23 | 121 | 39 | 137 | 9.52e-14 | 73.9 |
MS.gene058764.t1 | MTR_7g050710 | 27.974 | 311 | 175 | 7 | 263 | 524 | 3 | 313 | 2.06e-26 | 110 |
MS.gene058764.t1 | MTR_7g050710 | 30.286 | 175 | 116 | 3 | 22 | 194 | 12 | 182 | 3.75e-18 | 85.9 |
MS.gene058764.t1 | MTR_7g050560 | 29.433 | 282 | 169 | 4 | 270 | 521 | 12 | 293 | 2.19e-26 | 109 |
MS.gene058764.t1 | MTR_7g050560 | 33.981 | 103 | 68 | 0 | 22 | 124 | 12 | 114 | 1.05e-17 | 84.3 |
MS.gene058764.t1 | MTR_1g034240 | 46.465 | 99 | 53 | 0 | 271 | 369 | 7 | 105 | 2.61e-26 | 111 |
MS.gene058764.t1 | MTR_1g034240 | 40.404 | 99 | 59 | 0 | 23 | 121 | 7 | 105 | 7.90e-21 | 95.5 |
MS.gene058764.t1 | MTR_5g044670 | 26.645 | 304 | 181 | 8 | 263 | 525 | 8 | 310 | 5.94e-26 | 108 |
MS.gene058764.t1 | MTR_5g044670 | 34.211 | 114 | 74 | 1 | 9 | 121 | 1 | 114 | 6.50e-16 | 79.3 |
MS.gene058764.t1 | MTR_3g061340 | 29.779 | 272 | 157 | 7 | 271 | 517 | 12 | 274 | 7.19e-26 | 107 |
MS.gene058764.t1 | MTR_3g061340 | 25.651 | 269 | 138 | 9 | 23 | 241 | 12 | 268 | 4.09e-13 | 70.1 |
MS.gene058764.t1 | MTR_3g061310 | 28.873 | 284 | 157 | 7 | 270 | 517 | 11 | 285 | 1.03e-25 | 107 |
MS.gene058764.t1 | MTR_3g061310 | 27.206 | 272 | 143 | 7 | 22 | 241 | 11 | 279 | 1.00e-19 | 90.1 |
MS.gene058764.t1 | MTR_3g061320 | 29.749 | 279 | 155 | 8 | 270 | 517 | 11 | 279 | 2.04e-25 | 106 |
MS.gene058764.t1 | MTR_3g061320 | 27.881 | 269 | 139 | 8 | 22 | 241 | 11 | 273 | 3.65e-20 | 91.3 |
MS.gene058764.t1 | MTR_7g050580 | 27.946 | 297 | 165 | 8 | 264 | 521 | 7 | 293 | 5.35e-25 | 105 |
MS.gene058764.t1 | MTR_7g050580 | 29.530 | 149 | 98 | 2 | 12 | 157 | 2 | 146 | 6.94e-19 | 88.2 |
MS.gene058764.t1 | MTR_3g061350 | 26.596 | 282 | 163 | 6 | 271 | 517 | 12 | 284 | 1.16e-23 | 101 |
MS.gene058764.t1 | MTR_3g061350 | 26.296 | 270 | 145 | 8 | 23 | 241 | 12 | 278 | 2.05e-17 | 83.2 |
MS.gene058764.t1 | MTR_1g108780 | 28.283 | 297 | 148 | 11 | 286 | 527 | 12 | 298 | 1.10e-22 | 101 |
MS.gene058764.t1 | MTR_1g108780 | 33.333 | 84 | 56 | 0 | 38 | 121 | 12 | 95 | 7.76e-12 | 67.8 |
MS.gene058764.t1 | MTR_3g061370 | 29.032 | 279 | 166 | 7 | 268 | 517 | 6 | 281 | 1.35e-22 | 98.2 |
MS.gene058764.t1 | MTR_3g061370 | 25.532 | 282 | 140 | 6 | 19 | 241 | 5 | 275 | 5.57e-20 | 90.5 |
MS.gene058764.t1 | MTR_4g068320 | 42.157 | 102 | 59 | 0 | 268 | 369 | 3 | 104 | 4.54e-22 | 99.0 |
MS.gene058764.t1 | MTR_4g068320 | 34.513 | 113 | 65 | 1 | 9 | 121 | 1 | 104 | 8.13e-16 | 80.1 |
MS.gene058764.t1 | MTR_1g034210 | 40.777 | 103 | 61 | 0 | 271 | 373 | 7 | 109 | 4.25e-21 | 94.7 |
MS.gene058764.t1 | MTR_1g034210 | 33.613 | 119 | 68 | 1 | 23 | 141 | 7 | 114 | 1.71e-15 | 78.2 |
MS.gene058764.t1 | MTR_1g034210 | 40.777 | 103 | 61 | 0 | 271 | 373 | 7 | 109 | 8.06e-21 | 94.7 |
MS.gene058764.t1 | MTR_1g034210 | 33.613 | 119 | 68 | 1 | 23 | 141 | 7 | 114 | 2.36e-15 | 78.2 |
MS.gene058764.t1 | MTR_1g035460 | 28.231 | 294 | 141 | 8 | 287 | 518 | 2 | 287 | 7.28e-20 | 92.0 |
MS.gene058764.t1 | MTR_1g035460 | 37.647 | 85 | 53 | 0 | 39 | 123 | 2 | 86 | 1.18e-13 | 73.2 |
MS.gene058764.t1 | MTR_7g050590 | 27.586 | 290 | 147 | 10 | 287 | 521 | 2 | 283 | 9.39e-20 | 90.1 |
MS.gene058764.t1 | MTR_7g050590 | 31.250 | 112 | 72 | 1 | 39 | 145 | 2 | 113 | 2.37e-15 | 77.4 |
MS.gene058764.t1 | MTR_0152s0100 | 39.640 | 111 | 66 | 1 | 412 | 522 | 3 | 112 | 7.07e-19 | 82.8 |
MS.gene058764.t1 | MTR_0152s0100 | 39.640 | 111 | 66 | 1 | 412 | 522 | 3 | 112 | 7.07e-19 | 82.8 |
MS.gene058764.t1 | MTR_4g119990 | 28.328 | 293 | 157 | 8 | 270 | 511 | 14 | 304 | 7.86e-19 | 89.0 |
MS.gene058764.t1 | MTR_7g050720 | 25.733 | 307 | 170 | 6 | 270 | 518 | 9 | 315 | 9.56e-19 | 87.8 |
MS.gene058764.t1 | MTR_7g050720 | 34.653 | 101 | 66 | 0 | 22 | 122 | 9 | 109 | 6.22e-16 | 79.3 |
MS.gene058764.t1 | MTR_3g061290 | 31.604 | 212 | 120 | 8 | 270 | 475 | 11 | 203 | 1.09e-18 | 85.1 |
MS.gene058764.t1 | MTR_3g061290 | 37.000 | 100 | 61 | 1 | 22 | 121 | 11 | 108 | 8.94e-15 | 73.6 |
MS.gene058764.t1 | MTR_6g043890 | 28.070 | 285 | 156 | 8 | 270 | 508 | 14 | 295 | 5.86e-18 | 85.9 |
MS.gene058764.t1 | MTR_3g061220 | 40.404 | 99 | 44 | 2 | 23 | 121 | 12 | 95 | 8.45e-16 | 73.9 |
MS.gene058764.t1 | MTR_3g061220 | 39.394 | 99 | 45 | 2 | 271 | 369 | 12 | 95 | 2.36e-14 | 70.1 |
MS.gene058764.t1 | MTR_1g035640 | 26.471 | 272 | 166 | 9 | 280 | 520 | 14 | 282 | 9.43e-16 | 80.1 |
MS.gene058764.t1 | MTR_3g061330 | 40.404 | 99 | 57 | 1 | 271 | 369 | 12 | 108 | 9.42e-15 | 74.7 |
MS.gene058764.t1 | MTR_3g061330 | 38.384 | 99 | 59 | 1 | 23 | 121 | 12 | 108 | 1.35e-14 | 74.3 |
MS.gene058764.t1 | MTR_6g061070 | 24.038 | 312 | 170 | 8 | 270 | 519 | 17 | 323 | 2.56e-13 | 72.4 |
MS.gene058764.t1 | MTR_1g035480 | 29.921 | 127 | 86 | 2 | 265 | 391 | 11 | 134 | 5.10e-13 | 68.2 |
MS.gene058764.t1 | MTR_7g050640 | 35.789 | 95 | 61 | 0 | 270 | 364 | 12 | 106 | 7.53e-13 | 65.5 |
MS.gene058764.t1 | MTR_7g050640 | 29.630 | 108 | 76 | 0 | 16 | 123 | 6 | 113 | 3.77e-12 | 63.5 |
MS.gene058764.t1 | MTR_1g033740 | 33.628 | 113 | 70 | 3 | 270 | 382 | 21 | 128 | 1.37e-12 | 67.0 |
MS.gene058764.t1 | MTR_1g033740 | 26.786 | 168 | 98 | 5 | 22 | 170 | 21 | 182 | 5.17e-11 | 62.4 |
MS.gene058764.t1 | MTR_1g035440 | 35.577 | 104 | 66 | 1 | 270 | 372 | 14 | 117 | 1.65e-12 | 67.8 |
MS.gene058764.t1 | MTR_1g035500 | 30.328 | 122 | 82 | 2 | 270 | 391 | 24 | 142 | 9.31e-12 | 64.3 |
MS.gene058764.t1 | MTR_1g050845 | 23.048 | 269 | 188 | 7 | 269 | 522 | 7 | 271 | 4.52e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058764.t1 | AT3G18990 | 27.761 | 335 | 159 | 7 | 271 | 522 | 6 | 340 | 8.80e-30 | 120 |
MS.gene058764.t1 | AT3G18990 | 38.384 | 99 | 61 | 0 | 23 | 121 | 6 | 104 | 1.99e-18 | 87.0 |
MS.gene058764.t1 | AT3G18990 | 27.844 | 334 | 158 | 7 | 271 | 521 | 6 | 339 | 2.92e-29 | 119 |
MS.gene058764.t1 | AT3G18990 | 38.384 | 99 | 61 | 0 | 23 | 121 | 6 | 104 | 3.15e-18 | 87.0 |
MS.gene058764.t1 | AT3G18960 | 37.121 | 132 | 80 | 1 | 240 | 371 | 2 | 130 | 4.30e-19 | 85.9 |
MS.gene058764.t1 | AT3G18960 | 35.185 | 108 | 70 | 0 | 16 | 123 | 23 | 130 | 2.04e-16 | 78.2 |
MS.gene058764.t1 | AT3G18960 | 36.296 | 135 | 83 | 1 | 240 | 374 | 2 | 133 | 7.19e-19 | 85.9 |
MS.gene058764.t1 | AT3G18960 | 35.185 | 108 | 70 | 0 | 16 | 123 | 23 | 130 | 4.74e-16 | 77.4 |
MS.gene058764.t1 | AT4G01580 | 34.815 | 135 | 85 | 1 | 240 | 374 | 2 | 133 | 9.82e-19 | 84.7 |
MS.gene058764.t1 | AT4G01580 | 29.412 | 153 | 95 | 2 | 3 | 155 | 15 | 154 | 3.55e-17 | 80.1 |
MS.gene058764.t1 | AT1G49475 | 41.441 | 111 | 64 | 1 | 269 | 379 | 32 | 141 | 2.00e-18 | 84.0 |
MS.gene058764.t1 | AT1G49475 | 33.813 | 139 | 81 | 2 | 4 | 132 | 5 | 142 | 1.52e-16 | 78.6 |
MS.gene058764.t1 | AT1G26680 | 21.676 | 549 | 346 | 20 | 22 | 516 | 14 | 532 | 6.78e-17 | 84.7 |
MS.gene058764.t1 | AT1G26680 | 21.676 | 549 | 346 | 20 | 22 | 516 | 14 | 532 | 8.34e-17 | 84.3 |
MS.gene058764.t1 | AT2G24645 | 21.832 | 513 | 347 | 17 | 20 | 513 | 3 | 480 | 6.62e-15 | 77.8 |
MS.gene058764.t1 | AT2G24645 | 21.333 | 450 | 313 | 13 | 78 | 513 | 66 | 488 | 2.60e-14 | 75.9 |
MS.gene058764.t1 | AT2G24645 | 21.711 | 456 | 304 | 15 | 78 | 513 | 44 | 466 | 3.83e-14 | 75.1 |
MS.gene058764.t1 | AT1G26680 | 20.887 | 541 | 349 | 19 | 22 | 511 | 14 | 526 | 6.58e-14 | 75.5 |
MS.gene058764.t1 | AT3G18960 | 38.462 | 91 | 56 | 0 | 284 | 374 | 6 | 96 | 8.26e-14 | 70.1 |
MS.gene058764.t1 | AT3G18960 | 35.227 | 88 | 57 | 0 | 36 | 123 | 6 | 93 | 2.59e-12 | 65.9 |
MS.gene058764.t1 | AT1G26680 | 20.887 | 541 | 349 | 19 | 22 | 511 | 14 | 526 | 9.59e-14 | 74.7 |
MS.gene058764.t1 | AT1G26680 | 20.652 | 552 | 359 | 22 | 22 | 516 | 14 | 543 | 8.27e-13 | 71.6 |
MS.gene058764.t1 | AT1G26680 | 20.935 | 492 | 320 | 19 | 78 | 516 | 55 | 530 | 1.08e-11 | 68.2 |
MS.gene058764.t1 | AT1G49480 | 36.607 | 112 | 62 | 3 | 142 | 248 | 113 | 220 | 3.50e-11 | 63.5 |
MS.gene058764.t1 | AT1G49480 | 35.714 | 112 | 62 | 4 | 417 | 522 | 118 | 225 | 4.47e-11 | 63.5 |
MS.gene058764.t1 | AT1G49480 | 36.607 | 112 | 62 | 3 | 142 | 248 | 113 | 220 | 3.50e-11 | 63.5 |
MS.gene058764.t1 | AT1G49480 | 35.714 | 112 | 62 | 4 | 417 | 522 | 118 | 225 | 4.47e-11 | 63.5 |
MS.gene058764.t1 | AT1G49480 | 36.607 | 112 | 62 | 3 | 142 | 248 | 113 | 220 | 3.50e-11 | 63.5 |
MS.gene058764.t1 | AT1G49480 | 35.714 | 112 | 62 | 4 | 417 | 522 | 118 | 225 | 4.47e-11 | 63.5 |
Find 84 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGCTTTCCTTGAGAATTT+TGG | 0.134641 | 3.1:-714977 | None:intergenic |
GGCAGCACAATTCACTCTTT+TGG | 0.221967 | 3.1:-713454 | None:intergenic |
ACTGCTTTCCTTGAGAGTTT+TGG | 0.223060 | 3.1:-713690 | None:intergenic |
GATGAGTTTATAACAAGATT+TGG | 0.242784 | 3.1:+714382 | MS.gene058764:CDS |
TTGTTGTCCTTTACAAATTT+CGG | 0.251174 | 3.1:-715062 | None:intergenic |
GATGAGTTTATAAATAGATT+TGG | 0.270080 | 3.1:+713153 | MS.gene058764:CDS |
AAATACTATTCGTTAGGATA+TGG | 0.294914 | 3.1:+714520 | MS.gene058764:CDS |
TACTATCTCTTTGTCTTGAA+TGG | 0.298245 | 3.1:-714093 | None:intergenic |
TATGGCTTTCATAAAATGTT+TGG | 0.299040 | 3.1:-712342 | None:intergenic |
TTCAAAACTCCAAGTACTAA+TGG | 0.347246 | 3.1:+713399 | MS.gene058764:CDS |
CTTTGATCTCCATTAGTACT+TGG | 0.349576 | 3.1:-713408 | None:intergenic |
ATTTGCATTGAGAATGATTT+GGG | 0.350230 | 3.1:-715026 | None:intergenic |
ATGAGTTTATAAATAGATTT+GGG | 0.360502 | 3.1:+713154 | MS.gene058764:CDS |
ATGAGTTTATAACAAGATTT+GGG | 0.367534 | 3.1:+714383 | MS.gene058764:CDS |
TGGAGTGCGATTGGAACATT+TGG | 0.367737 | 3.1:-714957 | None:intergenic |
TTGAATGGGCGAGGGAAGTA+TGG | 0.375377 | 3.1:-714078 | None:intergenic |
CTACTCCTATGAAAAGTTCC+AGG | 0.375640 | 3.1:+714671 | MS.gene058764:CDS |
TATTTGCATTGAGAATGATT+TGG | 0.397480 | 3.1:-715027 | None:intergenic |
AATCTATTTATAAACTCATC+TGG | 0.412994 | 3.1:-713150 | None:intergenic |
AATCTTGTTATAAACTCATC+TGG | 0.413404 | 3.1:-714379 | None:intergenic |
ATGATCTGGAGGAGGAAGTA+TGG | 0.415345 | 3.1:-712360 | None:intergenic |
GCGACGGAACACATCTTTGC+CGG | 0.419956 | 3.1:-712295 | None:intergenic |
ATTCTGTAGTACGTTCCTTC+TGG | 0.420347 | 3.1:+713625 | MS.gene058764:intron |
TTTGCAAAATACTATTCGTT+AGG | 0.426106 | 3.1:+714514 | MS.gene058764:CDS |
ACTATCTCTTTGTCTTGAAT+GGG | 0.432252 | 3.1:-714092 | None:intergenic |
CAATGACAGAAAACGAAGTA+AGG | 0.437201 | 3.1:+714033 | MS.gene058764:CDS |
CTCTTTGTCTTGAATGGGCG+AGG | 0.444494 | 3.1:-714087 | None:intergenic |
AAGGGAAAACAATCTATTAG+AGG | 0.448831 | 3.1:+713786 | MS.gene058764:CDS |
TGATGGTCGTGAATGGGAAA+TGG | 0.450553 | 3.1:+713212 | MS.gene058764:CDS |
AATGGAGATCAAAGCATAAA+GGG | 0.451246 | 3.1:+713417 | MS.gene058764:CDS |
TTCTCAATGCAAATAACAAT+GGG | 0.452154 | 3.1:+715035 | MS.gene058764:CDS |
TAATGGAGATCAAAGCATAA+AGG | 0.452714 | 3.1:+713416 | MS.gene058764:CDS |
TTGGAATCTTTCTCCGGTGC+CGG | 0.453652 | 3.1:-712323 | None:intergenic |
CTGTTCCTGATGGTCGTGAT+TGG | 0.457555 | 3.1:+714434 | MS.gene058764:CDS |
AAATGTTTGGAATCTTTCTC+CGG | 0.458549 | 3.1:-712329 | None:intergenic |
TATTGTATTTCGAATACAAA+AGG | 0.459107 | 3.1:+713721 | MS.gene058764:CDS |
ATGTTTCGTGCGGTTGACTA+CGG | 0.465735 | 3.1:+715152 | MS.gene058764:CDS |
TCTTTCTCCGGTGCCGGTGA+CGG | 0.473264 | 3.1:-712317 | None:intergenic |
GGGATTTCCGAAATTTGTAA+AGG | 0.476832 | 3.1:+715055 | MS.gene058764:CDS |
TTGTTCCTGATGGTCGTGAA+TGG | 0.477275 | 3.1:+713205 | MS.gene058764:CDS |
ATTTCCCATTCACGACCATC+AGG | 0.482051 | 3.1:-713210 | None:intergenic |
CTGTGTGTTTGTTTCTCCAT+TGG | 0.483276 | 3.1:-714644 | None:intergenic |
AAAATTCTCAAGGAAAGCAT+TGG | 0.485732 | 3.1:+714979 | MS.gene058764:CDS |
TCCGTCGCCGTCACCGGCAC+CGG | 0.490647 | 3.1:+712310 | MS.gene058764:CDS |
GCAACTTGTAGCACAACAAC+AGG | 0.493988 | 3.1:-713844 | None:intergenic |
ACTGTTGCCAATTGTTGCTA+AGG | 0.496870 | 3.1:-713263 | None:intergenic |
GAATACTATTCCATCAGTTA+CGG | 0.500398 | 3.1:+713291 | MS.gene058764:CDS |
ATGTGTTCCGTCGCCGTCAC+CGG | 0.509296 | 3.1:+712304 | MS.gene058764:CDS |
ATTCTCAATGCAAATAACAA+TGG | 0.514820 | 3.1:+715034 | MS.gene058764:CDS |
TGTTCCTGATGGTCGTGAAT+GGG | 0.518981 | 3.1:+713206 | MS.gene058764:CDS |
CTCAAAACTCTAAGTACCAA+TGG | 0.522769 | 3.1:+714628 | MS.gene058764:CDS |
ACTGCCACTTGTTTCAACCC+TGG | 0.525622 | 3.1:-714689 | None:intergenic |
TCCGGTGCCGGTGACGGCGA+CGG | 0.526161 | 3.1:-712311 | None:intergenic |
TGAGTTGATCAAGGAGAAGC+CGG | 0.526203 | 3.1:+715112 | MS.gene058764:CDS |
TTGTGTGTTTGAGTTGATCA+AGG | 0.529271 | 3.1:+715103 | MS.gene058764:CDS |
GATGGTCGTGAATGGGAAAT+GGG | 0.538439 | 3.1:+713213 | MS.gene058764:CDS |
GTGGATTCAGTAAATTTGCA+AGG | 0.539955 | 3.1:+713767 | MS.gene058764:CDS |
TATTATATTTGATGTAACTT+CGG | 0.545296 | 3.1:+714588 | MS.gene058764:CDS |
TTTCATTCAAAATCCGTCAA+GGG | 0.556507 | 3.1:+713504 | MS.gene058764:CDS |
TACATATCTTTCAAATACGA+AGG | 0.575333 | 3.1:+714547 | MS.gene058764:CDS |
TTCATGCTCCAAAACTCTCA+AGG | 0.581396 | 3.1:+713682 | MS.gene058764:CDS |
AGGGAAAACAATCTATTAGA+GGG | 0.584707 | 3.1:+713787 | MS.gene058764:CDS |
TGGATTCAGTAAATTTGCAA+GGG | 0.590777 | 3.1:+713768 | MS.gene058764:CDS |
AATTGCAAAGCGAAATCTTG+TGG | 0.590812 | 3.1:+714810 | MS.gene058764:CDS |
AAAACTCTCAAGGAAAGCAG+TGG | 0.591204 | 3.1:+713692 | MS.gene058764:CDS |
CAATGCAGCCTCCATGCGGA+AGG | 0.592466 | 3.1:+714000 | MS.gene058764:intron |
GACTGGGCACACCTTCCGCA+TGG | 0.593609 | 3.1:-714011 | None:intergenic |
ATGTGTTTGAGCTGATCAAG+AGG | 0.597303 | 3.1:+713818 | MS.gene058764:CDS |
TCTTTGTCTTGAATGGGCGA+GGG | 0.598003 | 3.1:-714086 | None:intergenic |
AATGACAGAAAACGAAGTAA+GGG | 0.598240 | 3.1:+714034 | MS.gene058764:CDS |
ATCGCACTCCAAAATTCTCA+AGG | 0.598710 | 3.1:+714969 | MS.gene058764:CDS |
ACAAGTTGCAGCAATTTGCA+CGG | 0.599452 | 3.1:+713858 | MS.gene058764:CDS |
TACTCCTATGAAAAGTTCCA+GGG | 0.613948 | 3.1:+714672 | MS.gene058764:CDS |
AAGAAACAATGAAGACTCAC+CGG | 0.615286 | 3.1:+712276 | None:intergenic |
GCTACAGTTACTGTTCCTGA+TGG | 0.628443 | 3.1:+714424 | MS.gene058764:CDS |
AGTTCCAGGGTTGAAACAAG+TGG | 0.632824 | 3.1:+714685 | MS.gene058764:CDS |
TCATCAATGCGAATAACGAG+TGG | 0.633101 | 3.1:+713748 | MS.gene058764:CDS |
AAACTCTCAAGGAAAGCAGT+GGG | 0.637619 | 3.1:+713693 | MS.gene058764:CDS |
GAAATGGGACTGACGAAATG+TGG | 0.643468 | 3.1:+713228 | MS.gene058764:CDS |
CATTCATCATCACAGTAGAG+AGG | 0.649717 | 3.1:-715180 | None:intergenic |
AAAAGTCACAATGTTTCGTG+CGG | 0.653466 | 3.1:+715142 | MS.gene058764:CDS |
AAGGACAACAATCTGACACA+TGG | 0.654644 | 3.1:+715074 | MS.gene058764:CDS |
TGGGCACACCTTCCGCATGG+AGG | 0.664596 | 3.1:-714008 | None:intergenic |
ATTGCAATGCAGCCTCCATG+CGG | 0.701402 | 3.1:+713996 | MS.gene058764:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACACAAATTATTTACAAATT+TGG | - | chr3.1:712957-712976 | None:intergenic | 15.0% |
!! | ATGAGTTTATAAATAGATTT+GGG | + | chr3.1:713154-713173 | MS.gene058764:CDS | 15.0% |
!! | ATTAATTATTAGTGTATGTT+TGG | + | chr3.1:712583-712602 | MS.gene058764:intron | 15.0% |
!! | CACAAATTATTTACAAATTT+GGG | - | chr3.1:712956-712975 | None:intergenic | 15.0% |
!! | TATTATATTTGATGTAACTT+CGG | + | chr3.1:714588-714607 | MS.gene058764:CDS | 15.0% |
!!! | ATTTTTTTTATTCTTATCGT+CGG | - | chr3.1:714186-714205 | None:intergenic | 15.0% |
!!! | CAATTTTTGAACAAAAATAA+GGG | - | chr3.1:714795-714814 | None:intergenic | 15.0% |
!! | AATCTATTTATAAACTCATC+TGG | - | chr3.1:713153-713172 | None:intergenic | 20.0% |
!! | ATGAGTTTATAACAAGATTT+GGG | + | chr3.1:714383-714402 | MS.gene058764:CDS | 20.0% |
!! | GATGAGTTTATAAATAGATT+TGG | + | chr3.1:713153-713172 | MS.gene058764:CDS | 20.0% |
!! | TATTGTATTTCGAATACAAA+AGG | + | chr3.1:713721-713740 | MS.gene058764:CDS | 20.0% |
!!! | AATGAAAATAAGGGTTTTTT+GGG | - | chr3.1:713491-713510 | None:intergenic | 20.0% |
!!! | ATGTTTGAACTAATTTTTGT+GGG | - | chr3.1:712998-713017 | None:intergenic | 20.0% |
!!! | ATGTTTGAGTTATATACTTA+CGG | + | chr3.1:713577-713596 | MS.gene058764:intron | 20.0% |
!!! | CATTTTATAAACCTACAAAT+TGG | + | chr3.1:712708-712727 | MS.gene058764:intron | 20.0% |
!!! | GAATTTTACTTTGTAGTTTT+TGG | + | chr3.1:714836-714855 | MS.gene058764:intron | 20.0% |
!!! | GCAATTTTTGAACAAAAATA+AGG | - | chr3.1:714796-714815 | None:intergenic | 20.0% |
!!! | TAAAAAGTATTTGATGCTAA+TGG | + | chr3.1:713654-713673 | MS.gene058764:CDS | 20.0% |
!!! | TTTTAGATTTCAAGTATGAA+GGG | + | chr3.1:713319-713338 | MS.gene058764:CDS | 20.0% |
!!! | TTTTTAGATTTCAAGTATGA+AGG | + | chr3.1:713318-713337 | MS.gene058764:CDS | 20.0% |
!!! | TTTTTTTTATTCTTATCGTC+GGG | - | chr3.1:714185-714204 | None:intergenic | 20.0% |
! | AAAAAGCTCAAAATCAAGTT+TGG | + | chr3.1:714718-714737 | MS.gene058764:CDS | 25.0% |
! | AAATACTATTCGTTAGGATA+TGG | + | chr3.1:714520-714539 | MS.gene058764:CDS | 25.0% |
! | ACTACTTCAAAACATCAAAT+TGG | + | chr3.1:714276-714295 | MS.gene058764:intron | 25.0% |
! | ATCAATCAATCTTCAAAAGA+GGG | - | chr3.1:713086-713105 | None:intergenic | 25.0% |
! | ATTCTCAATGCAAATAACAA+TGG | + | chr3.1:715034-715053 | MS.gene058764:CDS | 25.0% |
! | ATTTGCATTGAGAATGATTT+GGG | - | chr3.1:715029-715048 | None:intergenic | 25.0% |
! | CTACTTCAAAACATCAAATT+GGG | + | chr3.1:714277-714296 | MS.gene058764:intron | 25.0% |
! | CTATAATACCAAACTTCAAA+AGG | - | chr3.1:714325-714344 | None:intergenic | 25.0% |
! | GATGAGTTTATAACAAGATT+TGG | + | chr3.1:714382-714401 | MS.gene058764:CDS | 25.0% |
! | GGTATTATAGTATAACCAAT+AGG | + | chr3.1:714335-714354 | MS.gene058764:intron | 25.0% |
! | TACATATCTTTCAAATACGA+AGG | + | chr3.1:714547-714566 | MS.gene058764:CDS | 25.0% |
! | TACTTCAAAACATCAAATTG+GGG | + | chr3.1:714278-714297 | MS.gene058764:intron | 25.0% |
! | TATGGCTTTCATAAAATGTT+TGG | - | chr3.1:712345-712364 | None:intergenic | 25.0% |
! | TATTTGCATTGAGAATGATT+TGG | - | chr3.1:715030-715049 | None:intergenic | 25.0% |
! | TTCTCAATGCAAATAACAAT+GGG | + | chr3.1:715035-715054 | MS.gene058764:CDS | 25.0% |
! | TTGTTGTCCTTTACAAATTT+CGG | - | chr3.1:715065-715084 | None:intergenic | 25.0% |
! | TTTGCAAAATACTATTCGTT+AGG | + | chr3.1:714514-714533 | MS.gene058764:CDS | 25.0% |
!! | AATCTTGTTATAAACTCATC+TGG | - | chr3.1:714382-714401 | None:intergenic | 25.0% |
!! | AATGCTGATACTACTTATTT+TGG | + | chr3.1:712465-712484 | MS.gene058764:intron | 25.0% |
!! | ACGGATTTTGAATGAAAATA+AGG | - | chr3.1:713501-713520 | None:intergenic | 25.0% |
!! | CATGTTTGAACTAATTTTTG+TGG | - | chr3.1:712999-713018 | None:intergenic | 25.0% |
!! | CGGATTTTGAATGAAAATAA+GGG | - | chr3.1:713500-713519 | None:intergenic | 25.0% |
!! | TTCATCAGTTTTACTACTAT+AGG | - | chr3.1:713109-713128 | None:intergenic | 25.0% |
!!! | ACTATTTCTTTTGTATGATC+TGG | - | chr3.1:712377-712396 | None:intergenic | 25.0% |
!!! | GAACAAAAATAAGGGTTTTT+TGG | - | chr3.1:714787-714806 | None:intergenic | 25.0% |
!!! | GAATGAAAATAAGGGTTTTT+TGG | - | chr3.1:713492-713511 | None:intergenic | 25.0% |
!!! | GATTTCACTTTCTAGTTTTT+TGG | + | chr3.1:713542-713561 | MS.gene058764:intron | 25.0% |
!!! | GTTTTTTGGATTGAATTCAT+TGG | - | chr3.1:714773-714792 | None:intergenic | 25.0% |
!!! | TTTTTTTATTCTTATCGTCG+GGG | - | chr3.1:714184-714203 | None:intergenic | 25.0% |
AACAGTAACTCAAAACAGAA+AGG | - | chr3.1:714125-714144 | None:intergenic | 30.0% | |
AAGGGAAAACAATCTATTAG+AGG | + | chr3.1:713786-713805 | MS.gene058764:CDS | 30.0% | |
AATACCAAACTTCAAAAGGA+GGG | - | chr3.1:714321-714340 | None:intergenic | 30.0% | |
AATGACAGAAAACGAAGTAA+GGG | + | chr3.1:714034-714053 | MS.gene058764:CDS | 30.0% | |
AATGGAGATCAAAGCATAAA+GGG | + | chr3.1:713417-713436 | MS.gene058764:CDS | 30.0% | |
ACAGTAACTCAAAACAGAAA+GGG | - | chr3.1:714124-714143 | None:intergenic | 30.0% | |
ACTATCTCTTTGTCTTGAAT+GGG | - | chr3.1:714095-714114 | None:intergenic | 30.0% | |
AGGGAAAACAATCTATTAGA+GGG | + | chr3.1:713787-713806 | MS.gene058764:CDS | 30.0% | |
CTAGACACCTAAATTTGATT+TGG | - | chr3.1:714234-714253 | None:intergenic | 30.0% | |
GAATACTATTCCATCAGTTA+CGG | + | chr3.1:713291-713310 | MS.gene058764:CDS | 30.0% | |
GATCAATCAATCTTCAAAAG+AGG | - | chr3.1:713087-713106 | None:intergenic | 30.0% | |
TAAAAAACAACCGTAACTGA+TGG | - | chr3.1:713304-713323 | None:intergenic | 30.0% | |
TAATACCAAACTTCAAAAGG+AGG | - | chr3.1:714322-714341 | None:intergenic | 30.0% | |
TAATGGAGATCAAAGCATAA+AGG | + | chr3.1:713416-713435 | MS.gene058764:CDS | 30.0% | |
TACTATCTCTTTGTCTTGAA+TGG | - | chr3.1:714096-714115 | None:intergenic | 30.0% | |
TCAATCAATCTTCAAAAGAG+GGG | - | chr3.1:713085-713104 | None:intergenic | 30.0% | |
TGGATTCAGTAAATTTGCAA+GGG | + | chr3.1:713768-713787 | MS.gene058764:CDS | 30.0% | |
TTAGGATATATTCTTCGAGT+CGG | + | chr3.1:712887-712906 | MS.gene058764:intron | 30.0% | |
TTCAAAACTCCAAGTACTAA+TGG | + | chr3.1:713399-713418 | MS.gene058764:CDS | 30.0% | |
TTTCATTCAAAATCCGTCAA+GGG | + | chr3.1:713504-713523 | MS.gene058764:CDS | 30.0% | |
! | AAAATTCTCAAGGAAAGCAT+TGG | + | chr3.1:714979-714998 | MS.gene058764:CDS | 30.0% |
! | AAATGTTTGGAATCTTTCTC+CGG | - | chr3.1:712332-712351 | None:intergenic | 30.0% |
! | AATGCTTTCCTTGAGAATTT+TGG | - | chr3.1:714980-714999 | None:intergenic | 30.0% |
! | ACAGGTTTAGGATATATTCT+AGG | + | chr3.1:712914-712933 | MS.gene058764:intron | 30.0% |
! | ACATTTTCTTTTGCAACGAA+TGG | + | chr3.1:714485-714504 | MS.gene058764:CDS | 30.0% |
! | ATTTCTTTTGTATGATCTGG+AGG | - | chr3.1:712374-712393 | None:intergenic | 30.0% |
! | CAGGTTTAGGATATATTCTA+GGG | + | chr3.1:712915-712934 | MS.gene058764:intron | 30.0% |
! | TCTTTTAATGTCTGAACTGT+TGG | + | chr3.1:713937-713956 | MS.gene058764:intron | 30.0% |
! | TTTGAACTAATTTTTGTGGG+AGG | - | chr3.1:712995-713014 | None:intergenic | 30.0% |
! | TTTTCATTCAAAATCCGTCA+AGG | + | chr3.1:713503-713522 | MS.gene058764:CDS | 30.0% |
!! | GGAATCGAAACATTTTAAGA+AGG | + | chr3.1:714055-714074 | MS.gene058764:CDS | 30.0% |
!! | TACTTTTTAGCAAAACCAGA+AGG | - | chr3.1:713643-713662 | None:intergenic | 30.0% |
!!! | TTAGTACTTGGAGTTTTGAA+TGG | - | chr3.1:713399-713418 | None:intergenic | 30.0% |
AAAAGTCACAATGTTTCGTG+CGG | + | chr3.1:715142-715161 | MS.gene058764:CDS | 35.0% | |
AATTGCAAAGCGAAATCTTG+TGG | + | chr3.1:714810-714829 | MS.gene058764:CDS | 35.0% | |
ATGCAAAAAACTTCGAGTCA+GGG | + | chr3.1:712857-712876 | MS.gene058764:intron | 35.0% | |
CAATGACAGAAAACGAAGTA+AGG | + | chr3.1:714033-714052 | MS.gene058764:CDS | 35.0% | |
CTCAAAACTCTAAGTACCAA+TGG | + | chr3.1:714628-714647 | MS.gene058764:CDS | 35.0% | |
CTTTGATCTCCATTAGTACT+TGG | - | chr3.1:713411-713430 | None:intergenic | 35.0% | |
GACGTGTCCAAATCAAATTT+AGG | + | chr3.1:714224-714243 | MS.gene058764:intron | 35.0% | |
GGGATTTCCGAAATTTGTAA+AGG | + | chr3.1:715055-715074 | MS.gene058764:CDS | 35.0% | |
GTGGATTCAGTAAATTTGCA+AGG | + | chr3.1:713767-713786 | MS.gene058764:CDS | 35.0% | |
TACTCCTATGAAAAGTTCCA+GGG | + | chr3.1:714672-714691 | MS.gene058764:CDS | 35.0% | |
TAGGATATATTCTTCGAGTC+GGG | + | chr3.1:712888-712907 | MS.gene058764:intron | 35.0% | |
! | ACGTTTTCCTTAGCAACAAT+TGG | + | chr3.1:713256-713275 | MS.gene058764:CDS | 35.0% |
! | ATTGTGACTTTTAGCACAAC+CGG | - | chr3.1:715134-715153 | None:intergenic | 35.0% |
! | GATTGATTGAGCATGTGTTT+TGG | + | chr3.1:712639-712658 | MS.gene058764:intron | 35.0% |
! | TGAACTGTTGGTGAACTTAA+TGG | + | chr3.1:713949-713968 | MS.gene058764:intron | 35.0% |
!! | ACATGCTTTTAAAAGTGCAG+AGG | + | chr3.1:714741-714760 | MS.gene058764:CDS | 35.0% |
!! | ACTCTAACTCTGAAACTTTG+AGG | + | chr3.1:712435-712454 | MS.gene058764:intron | 35.0% |
!! | GAGCATGTGTTTTGGATTAA+TGG | + | chr3.1:712647-712666 | MS.gene058764:intron | 35.0% |
!! | GCTATCATTTTTGTTCCTGA+TGG | + | chr3.1:713195-713214 | MS.gene058764:CDS | 35.0% |
!! | TTCGTTTTCTGTCATTGACT+GGG | - | chr3.1:714030-714049 | None:intergenic | 35.0% |
!! | TTGTGTGTTTGAGTTGATCA+AGG | + | chr3.1:715103-715122 | MS.gene058764:CDS | 35.0% |
!!! | GTTTTTTGGGTTGAATTCAC+TGG | - | chr3.1:713478-713497 | None:intergenic | 35.0% |
!!! | TTGGTACTTAGAGTTTTGAG+TGG | - | chr3.1:714628-714647 | None:intergenic | 35.0% |
AAAACTCTCAAGGAAAGCAG+TGG | + | chr3.1:713692-713711 | MS.gene058764:CDS | 40.0% | |
AAACTCTCAAGGAAAGCAGT+GGG | + | chr3.1:713693-713712 | MS.gene058764:CDS | 40.0% | |
AAGGACAACAATCTGACACA+TGG | + | chr3.1:715074-715093 | MS.gene058764:CDS | 40.0% | |
ACAAGTTGCAGCAATTTGCA+CGG | + | chr3.1:713858-713877 | MS.gene058764:CDS | 40.0% | |
ACTGTTGCCAATTGTTGCTA+AGG | - | chr3.1:713266-713285 | None:intergenic | 40.0% | |
AGGAACGTACTACAGAATGA+AGG | - | chr3.1:713623-713642 | None:intergenic | 40.0% | |
AGGATATATTCTTCGAGTCG+GGG | + | chr3.1:712889-712908 | MS.gene058764:intron | 40.0% | |
ATCGCACTCCAAAATTCTCA+AGG | + | chr3.1:714969-714988 | MS.gene058764:CDS | 40.0% | |
ATGTGTTTGAGCTGATCAAG+AGG | + | chr3.1:713818-713837 | MS.gene058764:CDS | 40.0% | |
ATTCTGTAGTACGTTCCTTC+TGG | + | chr3.1:713625-713644 | MS.gene058764:intron | 40.0% | |
CTACTCCTATGAAAAGTTCC+AGG | + | chr3.1:714671-714690 | MS.gene058764:CDS | 40.0% | |
GATGCAAAAAACTTCGAGTC+AGG | + | chr3.1:712856-712875 | MS.gene058764:intron | 40.0% | |
TCATCAATGCGAATAACGAG+TGG | + | chr3.1:713748-713767 | MS.gene058764:CDS | 40.0% | |
TGCATCCAAACATGATCTGT+AGG | - | chr3.1:712842-712861 | None:intergenic | 40.0% | |
TTCATGCTCCAAAACTCTCA+AGG | + | chr3.1:713682-713701 | MS.gene058764:CDS | 40.0% | |
TTGAGCCTACAGATCATGTT+TGG | + | chr3.1:712834-712853 | MS.gene058764:intron | 40.0% | |
! | ACTGCTTTCCTTGAGAGTTT+TGG | - | chr3.1:713693-713712 | None:intergenic | 40.0% |
! | ATTTTCCAATCACGACCATC+AGG | - | chr3.1:714442-714461 | None:intergenic | 40.0% |
! | CTGGAACTTTTCATAGGAGT+AGG | - | chr3.1:714673-714692 | None:intergenic | 40.0% |
! | CTGTGTGTTTGTTTCTCCAT+TGG | - | chr3.1:714647-714666 | None:intergenic | 40.0% |
! | CTTCGTTTTCTGTCATTGAC+TGG | - | chr3.1:714031-714050 | None:intergenic | 40.0% |
! | GCAGCACAATTCACTCTTTT+GGG | - | chr3.1:713456-713475 | None:intergenic | 40.0% |
! | TCAACCCTGGAACTTTTCAT+AGG | - | chr3.1:714679-714698 | None:intergenic | 40.0% |
! | TCTTTTGTATGATCTGGAGG+AGG | - | chr3.1:712371-712390 | None:intergenic | 40.0% |
!!! | ACTCTTTTGGGATCAGAGTT+AGG | - | chr3.1:713444-713463 | None:intergenic | 40.0% |
!!! | GTTACCCTCCTTTTGAAGTT+TGG | + | chr3.1:714314-714333 | MS.gene058764:intron | 40.0% |
!!! | TGAGAATTTTGGAGTGCGAT+TGG | - | chr3.1:714969-714988 | None:intergenic | 40.0% |
!!! | TGAGAGTTTTGGAGCATGAA+CGG | - | chr3.1:713682-713701 | None:intergenic | 40.0% |
AGTTCCAGGGTTGAAACAAG+TGG | + | chr3.1:714685-714704 | MS.gene058764:CDS | 45.0% | |
ATGATCTGGAGGAGGAAGTA+TGG | - | chr3.1:712363-712382 | None:intergenic | 45.0% | |
ATGTTTCGTGCGGTTGACTA+CGG | + | chr3.1:715152-715171 | MS.gene058764:CDS | 45.0% | |
ATTTCCCATTCACGACCATC+AGG | - | chr3.1:713213-713232 | None:intergenic | 45.0% | |
CGTACTACAGAATGAAGGAG+AGG | - | chr3.1:713618-713637 | None:intergenic | 45.0% | |
CTGCAGTGATAACAGCCTAT+TGG | - | chr3.1:714353-714372 | None:intergenic | 45.0% | |
GAAATGGGACTGACGAAATG+TGG | + | chr3.1:713228-713247 | MS.gene058764:CDS | 45.0% | |
GATGGTCGTGAATGGGAAAT+GGG | + | chr3.1:713213-713232 | MS.gene058764:CDS | 45.0% | |
GCAACTTGTAGCACAACAAC+AGG | - | chr3.1:713847-713866 | None:intergenic | 45.0% | |
GCTACAGTTACTGTTCCTGA+TGG | + | chr3.1:714424-714443 | MS.gene058764:CDS | 45.0% | |
TCTTTGTCTTGAATGGGCGA+GGG | - | chr3.1:714089-714108 | None:intergenic | 45.0% | |
TGATGGTCGTGAATGGGAAA+TGG | + | chr3.1:713212-713231 | MS.gene058764:CDS | 45.0% | |
TGGAGTGCGATTGGAACATT+TGG | - | chr3.1:714960-714979 | None:intergenic | 45.0% | |
TGTTCCTGATGGTCGTGAAT+GGG | + | chr3.1:713206-713225 | MS.gene058764:CDS | 45.0% | |
TTGTTCCTGATGGTCGTGAA+TGG | + | chr3.1:713205-713224 | MS.gene058764:CDS | 45.0% | |
! | GGCAGCACAATTCACTCTTT+TGG | - | chr3.1:713457-713476 | None:intergenic | 45.0% |
!! | TGAGTTGATCAAGGAGAAGC+CGG | + | chr3.1:715112-715131 | MS.gene058764:CDS | 45.0% |
!!! | ATCCGTCAAGGGCATTTTTG+CGG | + | chr3.1:713515-713534 | MS.gene058764:CDS | 45.0% |
!!! | GTGGGAGGCAACATTGATTT+TGG | - | chr3.1:712980-712999 | None:intergenic | 45.0% |
!! | AAAAATAAATATAAAACAAT+AGG | - | chr3.1:712512-712531 | None:intergenic | 5.0% |
ATTGCAATGCAGCCTCCATG+CGG | + | chr3.1:713996-714015 | MS.gene058764:intron | 50.0% | |
CACCGCAAAAATGCCCTTGA+CGG | - | chr3.1:713520-713539 | None:intergenic | 50.0% | |
CTCTTTGTCTTGAATGGGCG+AGG | - | chr3.1:714090-714109 | None:intergenic | 50.0% | |
CTGTTCCTGATGGTCGTGAT+TGG | + | chr3.1:714434-714453 | MS.gene058764:CDS | 50.0% | |
TACAAATTGGAGCCTCTCCG+CGG | + | chr3.1:712721-712740 | MS.gene058764:intron | 50.0% | |
TCGAGTCAGGGCTACAAGTT+AGG | + | chr3.1:712869-712888 | MS.gene058764:intron | 50.0% | |
TTGAATGGGCGAGGGAAGTA+TGG | - | chr3.1:714081-714100 | None:intergenic | 50.0% | |
TTGGAATCTTTCTCCGGTGC+CGG | - | chr3.1:712326-712345 | None:intergenic | 50.0% | |
! | ACTGCCACTTGTTTCAACCC+TGG | - | chr3.1:714692-714711 | None:intergenic | 50.0% |
! | ATGTTGTGATGACGAGTCCG+CGG | - | chr3.1:712741-712760 | None:intergenic | 50.0% |
!!! | TCAAGGGCATTTTTGCGGTG+AGG | + | chr3.1:713520-713539 | MS.gene058764:intron | 50.0% |
ATTCTTCGAGTCGGGGCAAC+AGG | + | chr3.1:712896-712915 | MS.gene058764:intron | 55.0% | |
GCGACGGAACACATCTTTGC+CGG | - | chr3.1:712298-712317 | None:intergenic | 55.0% | |
GCGGAGAGGCTCCAATTTGT+AGG | - | chr3.1:712722-712741 | None:intergenic | 55.0% | |
ATGTGTTCCGTCGCCGTCAC+CGG | + | chr3.1:712304-712323 | MS.gene058764:CDS | 60.0% | |
CAATGCAGCCTCCATGCGGA+AGG | + | chr3.1:714000-714019 | MS.gene058764:intron | 60.0% | |
CGAGTCGGGGCAACAGGTTT+AGG | + | chr3.1:712902-712921 | MS.gene058764:intron | 60.0% | |
!! | TCTTTCTCCGGTGCCGGTGA+CGG | - | chr3.1:712320-712339 | None:intergenic | 60.0% |
GACTGGGCACACCTTCCGCA+TGG | - | chr3.1:714014-714033 | None:intergenic | 65.0% | |
TGGGCACACCTTCCGCATGG+AGG | - | chr3.1:714011-714030 | None:intergenic | 65.0% | |
! | GTGATGACGAGTCCGCGGAG+AGG | - | chr3.1:712736-712755 | None:intergenic | 65.0% |
TCCGTCGCCGTCACCGGCAC+CGG | + | chr3.1:712310-712329 | MS.gene058764:CDS | 75.0% | |
!! | TCCGGTGCCGGTGACGGCGA+CGG | - | chr3.1:712314-712333 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 712284 | 715193 | 712284 | ID=MS.gene058764 |
chr3.1 | mRNA | 712284 | 715193 | 712284 | ID=MS.gene058764.t1;Parent=MS.gene058764 |
chr3.1 | exon | 712284 | 712394 | 712284 | ID=MS.gene058764.t1.exon1;Parent=MS.gene058764.t1 |
chr3.1 | CDS | 712284 | 712394 | 712284 | ID=cds.MS.gene058764.t1;Parent=MS.gene058764.t1 |
chr3.1 | exon | 713144 | 713536 | 713144 | ID=MS.gene058764.t1.exon2;Parent=MS.gene058764.t1 |
chr3.1 | CDS | 713144 | 713536 | 713144 | ID=cds.MS.gene058764.t1;Parent=MS.gene058764.t1 |
chr3.1 | exon | 713634 | 713879 | 713634 | ID=MS.gene058764.t1.exon3;Parent=MS.gene058764.t1 |
chr3.1 | CDS | 713634 | 713879 | 713634 | ID=cds.MS.gene058764.t1;Parent=MS.gene058764.t1 |
chr3.1 | exon | 714008 | 714112 | 714008 | ID=MS.gene058764.t1.exon4;Parent=MS.gene058764.t1 |
chr3.1 | CDS | 714008 | 714112 | 714008 | ID=cds.MS.gene058764.t1;Parent=MS.gene058764.t1 |
chr3.1 | exon | 714373 | 714831 | 714373 | ID=MS.gene058764.t1.exon5;Parent=MS.gene058764.t1 |
chr3.1 | CDS | 714373 | 714831 | 714373 | ID=cds.MS.gene058764.t1;Parent=MS.gene058764.t1 |
chr3.1 | exon | 714921 | 715193 | 714921 | ID=MS.gene058764.t1.exon6;Parent=MS.gene058764.t1 |
chr3.1 | CDS | 714921 | 715193 | 714921 | ID=cds.MS.gene058764.t1;Parent=MS.gene058764.t1 |
Gene Sequence |
Protein sequence |