Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058930.t1 | XP_013452663.1 | 100 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 7.30E-85 | 323.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058930.t1 | Q9LYW3 | 79.6 | 167 | 34 | 0 | 1 | 167 | 1 | 167 | 8.8e-71 | 267.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058930.t1 | A0A072UB69 | 100.0 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 5.3e-85 | 323.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene058930.t1 | TR | MED7 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058930.t1 | MTR_6g471120 | 100.000 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 5.53e-122 | 340 |
MS.gene058930.t1 | MTR_2g094720 | 99.405 | 168 | 1 | 0 | 1 | 168 | 1 | 168 | 1.85e-121 | 339 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058930.t1 | AT5G03500 | 77.976 | 168 | 37 | 0 | 1 | 168 | 11 | 178 | 1.60e-89 | 259 |
MS.gene058930.t1 | AT5G03500 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.60e-89 | 259 |
MS.gene058930.t1 | AT5G03500 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.60e-89 | 259 |
MS.gene058930.t1 | AT5G03500 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.60e-89 | 259 |
MS.gene058930.t1 | AT5G03500 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.60e-89 | 259 |
MS.gene058930.t1 | AT5G03500 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.60e-89 | 259 |
MS.gene058930.t1 | AT5G03500 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.60e-89 | 259 |
MS.gene058930.t1 | AT5G03220 | 79.167 | 168 | 35 | 0 | 1 | 168 | 1 | 168 | 1.68e-84 | 246 |
Find 41 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAACTCTGATTCACATTT+TGG | 0.181104 | 2.3:-7308448 | MS.gene058930:CDS |
AGAATTGCAACTACACATTT+TGG | 0.197843 | 2.3:-7308700 | MS.gene058930:CDS |
CACCACCACCACCTTATTAC+AGG | 0.297273 | 2.3:-7311295 | MS.gene058930:CDS |
AAGGAGCTGAGGTCACTTAA+TGG | 0.305351 | 2.3:-7308723 | MS.gene058930:CDS |
TAAGATAGCCTACCAATATT+AGG | 0.320366 | 2.3:+7309523 | None:intergenic |
GAAGGAACTTATATTTGTTT+CGG | 0.355999 | 2.3:-7311215 | MS.gene058930:CDS |
GAATTCTCTGCGTCCTCATC+AGG | 0.376395 | 2.3:-7308586 | MS.gene058930:intron |
GGAGGCTCTGGAGCAGACTC+AGG | 0.379890 | 2.3:+7311248 | None:intergenic |
AAGCTGTGGAGGACATAAAT+AGG | 0.396665 | 2.3:-7308401 | MS.gene058930:intron |
TCAATCGGTGGTGGAGGCTC+TGG | 0.403322 | 2.3:+7311236 | None:intergenic |
GAGTCATTGGCAACACTTGA+TGG | 0.406036 | 2.3:-7307253 | MS.gene058930:CDS |
CTGGAGCAGACTCAGGGTCC+TGG | 0.414763 | 2.3:+7311255 | None:intergenic |
TATTCTAAAGGACCTAATAT+TGG | 0.416061 | 2.3:-7309535 | MS.gene058930:intron |
CTGTAATAAGGTGGTGGTGG+TGG | 0.437759 | 2.3:+7311296 | None:intergenic |
TCTTTGTAAAGCCTGTAATA+AGG | 0.439294 | 2.3:+7311284 | None:intergenic |
GTGTTGCCAATGACTCGTTA+AGG | 0.463201 | 2.3:+7307260 | None:intergenic |
ACTCCTTGTTCTTCCAAGCT+TGG | 0.471721 | 2.3:+7309568 | None:intergenic |
AAGAATCCTTAACGAGTCAT+TGG | 0.477983 | 2.3:-7307266 | MS.gene058930:CDS |
CAAATATAAGTTCCTTCAAT+CGG | 0.478209 | 2.3:+7311221 | None:intergenic |
GAGCCTCCACCACCGATTGA+AGG | 0.480913 | 2.3:-7311233 | MS.gene058930:CDS |
TAGGTCCTTTAGAATAGAGT+TGG | 0.518443 | 2.3:+7309542 | None:intergenic |
ACTCTCCTTGCATATTGTGA+TGG | 0.520397 | 2.3:+7308651 | None:intergenic |
GTTCCTTCAATCGGTGGTGG+AGG | 0.523884 | 2.3:+7311230 | None:intergenic |
GAGGCTCTGGAGCAGACTCA+GGG | 0.526066 | 2.3:+7311249 | None:intergenic |
TAGTGATGTTCTACCAAGCT+TGG | 0.528638 | 2.3:-7309581 | MS.gene058930:CDS |
GTACGCCAACTCTATTCTAA+AGG | 0.536469 | 2.3:-7309547 | MS.gene058930:CDS |
TGTAATAAGGTGGTGGTGGT+GGG | 0.546044 | 2.3:+7311297 | None:intergenic |
GAGGACGCAGAGAATTCAAA+AGG | 0.547381 | 2.3:+7308592 | None:intergenic |
TAAGTTCCTTCAATCGGTGG+TGG | 0.561411 | 2.3:+7311227 | None:intergenic |
GGAACTTATATTTGTTTCGG+AGG | 0.567063 | 2.3:-7311212 | MS.gene058930:CDS |
CTACCAAGCTTGGAAGAACA+AGG | 0.582575 | 2.3:-7309571 | MS.gene058930:CDS |
AGCCTGTAATAAGGTGGTGG+TGG | 0.598331 | 2.3:+7311293 | None:intergenic |
TAGATTTCAAGAAGGAGCTG+AGG | 0.608725 | 2.3:-7308734 | MS.gene058930:CDS |
AGAACGTCGTAAACAAGCTG+TGG | 0.618675 | 2.3:-7308415 | MS.gene058930:CDS |
AGAGACCATCACAATATGCA+AGG | 0.622612 | 2.3:-7308656 | MS.gene058930:CDS |
AGATCATTGTATACCTGATG+AGG | 0.623348 | 2.3:+7308573 | None:intergenic |
ATATAAGTTCCTTCAATCGG+TGG | 0.635000 | 2.3:+7311224 | None:intergenic |
GCTTTACAAAGATTACGTCC+AGG | 0.635871 | 2.3:-7311273 | MS.gene058930:CDS |
TTGTAAAGCCTGTAATAAGG+TGG | 0.646875 | 2.3:+7311287 | None:intergenic |
TAAAGCCTGTAATAAGGTGG+TGG | 0.655388 | 2.3:+7311290 | None:intergenic |
ACGTCGTAAACAAGCTGTGG+AGG | 0.660694 | 2.3:-7308412 | MS.gene058930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAATTAAAAAAAAAAATC+AGG | + | chr2.3:7310199-7310218 | None:intergenic | 10.0% |
!! | TTTAATTATGTGTAATTTAA+TGG | - | chr2.3:7307554-7307573 | MS.gene058930:intron | 10.0% |
!!! | TGTTATTCATATTTTAATTA+TGG | - | chr2.3:7310629-7310648 | MS.gene058930:intron | 10.0% |
!! | AAAGGAAAAAAATAATGTTA+TGG | + | chr2.3:7308322-7308341 | None:intergenic | 15.0% |
!! | AATGTAGTTAAAATTGATAA+TGG | - | chr2.3:7310899-7310918 | MS.gene058930:intron | 15.0% |
!! | ATATCATGTATTTACTTTAT+AGG | - | chr2.3:7310085-7310104 | MS.gene058930:intron | 15.0% |
!! | ATGAAACAAATTTCAATAAA+GGG | + | chr2.3:7308609-7308628 | None:intergenic | 15.0% |
!! | TATAATGAAAATTTCAGAAA+CGG | + | chr2.3:7310068-7310087 | None:intergenic | 15.0% |
!!! | AAAAAGTACAATCTATATAA+AGG | + | chr2.3:7310662-7310681 | None:intergenic | 15.0% |
!!! | AATTAGTATTTATTTTTACC+TGG | - | chr2.3:7307579-7307598 | MS.gene058930:intron | 15.0% |
!!! | ATAACAGCTTTTTTTTTAAA+GGG | + | chr2.3:7308114-7308133 | None:intergenic | 15.0% |
!!! | ATTCATATTTTAATTATGGA+AGG | - | chr2.3:7310633-7310652 | MS.gene058930:intron | 15.0% |
!!! | TAATTTTTTTATGATACGTA+TGG | - | chr2.3:7311195-7311214 | MS.gene058930:intron | 15.0% |
!!! | TATAACAGCTTTTTTTTTAA+AGG | + | chr2.3:7308115-7308134 | None:intergenic | 15.0% |
!!! | TTTTATAAACTACTTAAATG+TGG | + | chr2.3:7308449-7308468 | None:intergenic | 15.0% |
!! | AAAAAGATTACAAAAAGAGA+AGG | + | chr2.3:7309581-7309600 | None:intergenic | 20.0% |
!! | AACATGTAGAAATAAGAATT+AGG | + | chr2.3:7310507-7310526 | None:intergenic | 20.0% |
!! | AAGTAGTTTATAAAAAGTAG+TGG | - | chr2.3:7308454-7308473 | MS.gene058930:CDS | 20.0% |
!! | AATTACAATATTTATCCGAA+GGG | - | chr2.3:7307957-7307976 | MS.gene058930:intron | 20.0% |
!! | AGTAGTTTATAAAAAGTAGT+GGG | - | chr2.3:7308455-7308474 | MS.gene058930:CDS | 20.0% |
!! | ATAATGAAAATTTCAGAAAC+GGG | + | chr2.3:7310067-7310086 | None:intergenic | 20.0% |
!! | ATAATGATATCAAAATTGCA+AGG | + | chr2.3:7307398-7307417 | None:intergenic | 20.0% |
!! | ATTTGTTTCATGAGAATTAA+AGG | - | chr2.3:7308618-7308637 | MS.gene058930:CDS | 20.0% |
!! | CATGAAACAAATTTCAATAA+AGG | + | chr2.3:7308610-7308629 | None:intergenic | 20.0% |
!! | TAAACTCTAAATTGATTGTA+GGG | - | chr2.3:7308653-7308672 | MS.gene058930:CDS | 20.0% |
!! | TAATGATATCAAAATTGCAA+GGG | + | chr2.3:7307397-7307416 | None:intergenic | 20.0% |
!! | TAATTACAATATTTATCCGA+AGG | - | chr2.3:7307956-7307975 | MS.gene058930:intron | 20.0% |
!! | TAGGAATGATATCATTAAAT+AGG | - | chr2.3:7308681-7308700 | MS.gene058930:CDS | 20.0% |
!! | TATTGTAATTAAGTGTTTCT+AGG | + | chr2.3:7307947-7307966 | None:intergenic | 20.0% |
!! | TTAAACTCTAAATTGATTGT+AGG | - | chr2.3:7308652-7308671 | MS.gene058930:CDS | 20.0% |
!!! | AAAAAAGTTTCACTATGTTT+TGG | - | chr2.3:7307871-7307890 | MS.gene058930:intron | 20.0% |
!!! | AATTAGTTTAACATAGCTTA+TGG | + | chr2.3:7307809-7307828 | None:intergenic | 20.0% |
!!! | ATAATGTTATGGAATACTTT+TGG | + | chr2.3:7308311-7308330 | None:intergenic | 20.0% |
!!! | ATTGTAATTAAGTGTTTCTA+GGG | + | chr2.3:7307946-7307965 | None:intergenic | 20.0% |
!!! | ATTTTTTTCTTCAGACAAAA+AGG | + | chr2.3:7309645-7309664 | None:intergenic | 20.0% |
!!! | TAATGTTATGGAATACTTTT+GGG | + | chr2.3:7308310-7308329 | None:intergenic | 20.0% |
!!! | TTAGTTCATTCTTTTGAAAA+TGG | - | chr2.3:7310300-7310319 | MS.gene058930:intron | 20.0% |
!!! | TTATTGAAAGAATTGATTTC+TGG | - | chr2.3:7310783-7310802 | MS.gene058930:intron | 20.0% |
!!! | TTGCAATTTTGATATCATTA+TGG | - | chr2.3:7307397-7307416 | MS.gene058930:intron | 20.0% |
!!! | TTGTTTCACATTTTTCATTT+AGG | - | chr2.3:7309554-7309573 | MS.gene058930:CDS | 20.0% |
!!! | TTTTCCGTTTATATATACAT+GGG | - | chr2.3:7309598-7309617 | MS.gene058930:intron | 20.0% |
!!! | TTTTTCCGTTTATATATACA+TGG | - | chr2.3:7309597-7309616 | MS.gene058930:intron | 20.0% |
! | AAACAACCTTAACTTATTCA+GGG | - | chr2.3:7310372-7310391 | MS.gene058930:intron | 25.0% |
! | AACCATCATAAAAGATTTAG+AGG | - | chr2.3:7309123-7309142 | MS.gene058930:intron | 25.0% |
! | AAGGTAAGATGTTAACTATA+AGG | + | chr2.3:7309803-7309822 | None:intergenic | 25.0% |
! | AATAAGTTAAGGTTGTTTAC+TGG | + | chr2.3:7310370-7310389 | None:intergenic | 25.0% |
! | AATTTCAATAAAGGGTAGTT+TGG | + | chr2.3:7308601-7308620 | None:intergenic | 25.0% |
! | ATAATATTGTCGTCTAAACA+TGG | - | chr2.3:7308132-7308151 | MS.gene058930:intron | 25.0% |
! | ATATAAACTTGCCTTTGATT+TGG | - | chr2.3:7310024-7310043 | MS.gene058930:intron | 25.0% |
! | ATGAACTAGAGAAATTTCAA+AGG | + | chr2.3:7308340-7308359 | None:intergenic | 25.0% |
! | ATTACAATATTTATCCGAAG+GGG | - | chr2.3:7307958-7307977 | MS.gene058930:intron | 25.0% |
! | CAAATATAAGTTCCTTCAAT+CGG | + | chr2.3:7307342-7307361 | None:intergenic | 25.0% |
! | CAATACTCATTTGATATTAC+CGG | - | chr2.3:7308269-7308288 | MS.gene058930:intron | 25.0% |
! | CTATTTACTATCTAGTTGTT+TGG | - | chr2.3:7308158-7308177 | MS.gene058930:intron | 25.0% |
! | GAAGGAACTTATATTTGTTT+CGG | - | chr2.3:7307345-7307364 | MS.gene058930:intron | 25.0% |
! | GGAAATCTTAACCAAATAAT+TGG | + | chr2.3:7308093-7308112 | None:intergenic | 25.0% |
! | GTAGAAATAAGAATTAGGAT+AGG | + | chr2.3:7310502-7310521 | None:intergenic | 25.0% |
! | GTATTCCATTAGAAAAAGTT+TGG | + | chr2.3:7310946-7310965 | None:intergenic | 25.0% |
! | GTTCTATCAAAAACCATATT+TGG | + | chr2.3:7309163-7309182 | None:intergenic | 25.0% |
! | TAAACAACCTTAACTTATTC+AGG | - | chr2.3:7310371-7310390 | MS.gene058930:intron | 25.0% |
! | TAATATTGTCGTCTAAACAT+GGG | - | chr2.3:7308133-7308152 | MS.gene058930:intron | 25.0% |
! | TAGAAAGATAAGGTCAAAAT+AGG | + | chr2.3:7307747-7307766 | None:intergenic | 25.0% |
! | TAGGCATTATTAACTTCATA+GGG | - | chr2.3:7309718-7309737 | MS.gene058930:intron | 25.0% |
! | TCATGAGAATTAAAGGTTAT+TGG | - | chr2.3:7308625-7308644 | MS.gene058930:CDS | 25.0% |
! | TCCTTCTTGAAATCTATAAA+AGG | + | chr2.3:7309822-7309841 | None:intergenic | 25.0% |
! | TTAATAATGCCTAAAAGATC+AGG | + | chr2.3:7309711-7309730 | None:intergenic | 25.0% |
! | TTAGGCATTATTAACTTCAT+AGG | - | chr2.3:7309717-7309736 | MS.gene058930:intron | 25.0% |
!! | AAGCAAATAAAAGCTCTTTT+GGG | + | chr2.3:7307666-7307685 | None:intergenic | 25.0% |
!! | ACCTTTTATAGATTTCAAGA+AGG | - | chr2.3:7309818-7309837 | MS.gene058930:intron | 25.0% |
!! | GTTAAGATTTGCGTATATTT+TGG | - | chr2.3:7308712-7308731 | MS.gene058930:CDS | 25.0% |
!! | TAACTTATGTTCTAGCTATT+AGG | + | chr2.3:7310573-7310592 | None:intergenic | 25.0% |
!! | TATTCTAAAGGACCTAATAT+TGG | - | chr2.3:7309025-7309044 | MS.gene058930:intron | 25.0% |
!! | TGCTGTTTATAATCTTTATC+AGG | - | chr2.3:7308756-7308775 | MS.gene058930:intron | 25.0% |
!!! | AATTTTTTTGTGGTTGTGAT+CGG | - | chr2.3:7308186-7308205 | MS.gene058930:intron | 25.0% |
!!! | ATCTCCTTGTATTTCTATTT+TGG | + | chr2.3:7310418-7310437 | None:intergenic | 25.0% |
!!! | TCTCCTTGTATTTCTATTTT+GGG | + | chr2.3:7310417-7310436 | None:intergenic | 25.0% |
!!! | TTCTTTTGATTAACCTCTTT+TGG | - | chr2.3:7309528-7309547 | MS.gene058930:intron | 25.0% |
!!! | TTTCCATTTTTGAAGTCTTT+GGG | + | chr2.3:7308227-7308246 | None:intergenic | 25.0% |
!!! | TTTGGCATGTAATTTTTTTG+TGG | - | chr2.3:7308176-7308195 | MS.gene058930:intron | 25.0% |
!!! | TTTTCCATTTTTGAAGTCTT+TGG | + | chr2.3:7308228-7308247 | None:intergenic | 25.0% |
AAAATGTACAAAGATACACC+AGG | + | chr2.3:7311008-7311027 | None:intergenic | 30.0% | |
AAATGACTGTAATAGTGCTT+TGG | - | chr2.3:7311046-7311065 | MS.gene058930:intron | 30.0% | |
AGAACCTTCTACAAATTTGT+TGG | - | chr2.3:7310233-7310252 | MS.gene058930:intron | 30.0% | |
AGCTTATGAAAACAGCTTAT+AGG | - | chr2.3:7307848-7307867 | MS.gene058930:intron | 30.0% | |
ATGCTCTGTTAAATTTGAAG+AGG | - | chr2.3:7309070-7309089 | MS.gene058930:intron | 30.0% | |
ATTAGAAAAAGTTTGGCAAC+AGG | + | chr2.3:7310939-7310958 | None:intergenic | 30.0% | |
CAAAAGAATGAACTAACTTG+TGG | + | chr2.3:7310296-7310315 | None:intergenic | 30.0% | |
CACAAACACTTAGAAAGATA+AGG | + | chr2.3:7307757-7307776 | None:intergenic | 30.0% | |
CATACCAACAAATTTGTAGA+AGG | + | chr2.3:7310240-7310259 | None:intergenic | 30.0% | |
CGGTAATATCAAATGAGTAT+TGG | + | chr2.3:7308271-7308290 | None:intergenic | 30.0% | |
CTGAAAAGAAAAGAGAAAGT+AGG | + | chr2.3:7311256-7311275 | None:intergenic | 30.0% | |
TAAGATAGCCTACCAATATT+AGG | + | chr2.3:7309040-7309059 | None:intergenic | 30.0% | |
TATCTTTCTAAGTGTTTGTG+TGG | - | chr2.3:7307757-7307776 | MS.gene058930:intron | 30.0% | |
TCTCCCAAAATAGAAATACA+AGG | - | chr2.3:7310411-7310430 | MS.gene058930:intron | 30.0% | |
TCTTTGTAAAGCCTGTAATA+AGG | + | chr2.3:7307279-7307298 | None:intergenic | 30.0% | |
TGCAAAACCTGAAGAATTTA+AGG | - | chr2.3:7310692-7310711 | MS.gene058930:intron | 30.0% | |
TGTGAAACAAAAACCAAAAG+AGG | + | chr2.3:7309544-7309563 | None:intergenic | 30.0% | |
TGTTAAATTTGAAGAGGTAG+AGG | - | chr2.3:7309076-7309095 | MS.gene058930:intron | 30.0% | |
TGTTGTTGCATAGTGAAATT+TGG | - | chr2.3:7309443-7309462 | MS.gene058930:intron | 30.0% | |
TTAGAAAAAGTTTGGCAACA+GGG | + | chr2.3:7310938-7310957 | None:intergenic | 30.0% | |
! | ACAGCAAAATAATCCAGTTT+TGG | + | chr2.3:7308742-7308761 | None:intergenic | 30.0% |
! | AGAATTGCAACTACACATTT+TGG | - | chr2.3:7309860-7309879 | MS.gene058930:intron | 30.0% |
! | ATGGTTGCTCATATCAATTT+TGG | + | chr2.3:7311114-7311133 | None:intergenic | 30.0% |
! | CACTTTTCCATTTTAAACTG+TGG | - | chr2.3:7310847-7310866 | MS.gene058930:intron | 30.0% |
! | CTACTTTCTCTTTTCTTTTC+AGG | - | chr2.3:7311254-7311273 | MS.gene058930:CDS | 30.0% |
! | GAAGCAAATAAAAGCTCTTT+TGG | + | chr2.3:7307667-7307686 | None:intergenic | 30.0% |
! | GACCTCTAAATCTTTTATGA+TGG | + | chr2.3:7309128-7309147 | None:intergenic | 30.0% |
! | GTGATGCAAATTTTTGAACA+CGG | + | chr2.3:7309949-7309968 | None:intergenic | 30.0% |
! | TGACACTTGAATAGACATTT+TGG | - | chr2.3:7307500-7307519 | MS.gene058930:intron | 30.0% |
! | TGGTTTTTGATAGAACACTA+TGG | - | chr2.3:7309167-7309186 | MS.gene058930:intron | 30.0% |
! | TTTCCATTTTAAACTGTGGA+TGG | - | chr2.3:7310851-7310870 | MS.gene058930:intron | 30.0% |
! | TTTTATGATGGTTTCTCGAA+TGG | + | chr2.3:7309116-7309135 | None:intergenic | 30.0% |
!! | AAAAATGGAAAAGTACCAAC+AGG | - | chr2.3:7308236-7308255 | MS.gene058930:intron | 30.0% |
!! | AATTGATTGTAGGGCATTTT+AGG | - | chr2.3:7308662-7308681 | MS.gene058930:CDS | 30.0% |
!! | ATTAAGTGTTTCTAGGGTAA+AGG | + | chr2.3:7307940-7307959 | None:intergenic | 30.0% |
!! | TGTTGCCAAACTTTTTCTAA+TGG | - | chr2.3:7310938-7310957 | MS.gene058930:intron | 30.0% |
!! | TTAAGTGTTTCTAGGGTAAA+GGG | + | chr2.3:7307939-7307958 | None:intergenic | 30.0% |
!! | TTGAATAGACATTTTGGAAG+AGG | - | chr2.3:7307506-7307525 | MS.gene058930:intron | 30.0% |
AAAAAACTAGTAAGCAGCCA+TGG | + | chr2.3:7310746-7310765 | None:intergenic | 35.0% | |
AAAAACTAGTAAGCAGCCAT+GGG | + | chr2.3:7310745-7310764 | None:intergenic | 35.0% | |
AAGAATCCTTAACGAGTCAT+TGG | - | chr2.3:7311294-7311313 | MS.gene058930:CDS | 35.0% | |
AAGCCCAAAGACTTCAAAAA+TGG | - | chr2.3:7308221-7308240 | MS.gene058930:intron | 35.0% | |
ACTACACACAGTCACATATT+AGG | + | chr2.3:7309675-7309694 | None:intergenic | 35.0% | |
AGAAATCATAGCATCATACC+TGG | - | chr2.3:7310987-7311006 | MS.gene058930:intron | 35.0% | |
AGATCATTGTATACCTGATG+AGG | + | chr2.3:7309990-7310009 | None:intergenic | 35.0% | |
AGATTTAGAGGTCAATGAGT+TGG | - | chr2.3:7309135-7309154 | MS.gene058930:intron | 35.0% | |
AGGTATGATGCTATGATTTC+TGG | + | chr2.3:7310988-7311007 | None:intergenic | 35.0% | |
AGTGTTTGACAACACTACAA+AGG | + | chr2.3:7309334-7309353 | None:intergenic | 35.0% | |
ATATAAGTTCCTTCAATCGG+TGG | + | chr2.3:7307339-7307358 | None:intergenic | 35.0% | |
CACTATATATACACACACTC+TGG | - | chr2.3:7308491-7308510 | MS.gene058930:intron | 35.0% | |
CATGAAAATGTTCCAAGAGT+AGG | + | chr2.3:7310532-7310551 | None:intergenic | 35.0% | |
CCAGCCCATGTATATATAAA+CGG | + | chr2.3:7309605-7309624 | None:intergenic | 35.0% | |
CTAAAGGACCTAATATTGGT+AGG | - | chr2.3:7309029-7309048 | MS.gene058930:intron | 35.0% | |
CTCATTTGATATTACCGGAT+AGG | - | chr2.3:7308274-7308293 | MS.gene058930:intron | 35.0% | |
CTTCCATCCACAGTTTAAAA+TGG | + | chr2.3:7310857-7310876 | None:intergenic | 35.0% | |
GGAACTTATATTTGTTTCGG+AGG | - | chr2.3:7307348-7307367 | MS.gene058930:intron | 35.0% | |
TAGAAAAAGTTTGGCAACAG+GGG | + | chr2.3:7310937-7310956 | None:intergenic | 35.0% | |
TATTGGTATCAGATACCTGT+TGG | + | chr2.3:7308254-7308273 | None:intergenic | 35.0% | |
TCAGTTAAGGTTGTTAGTGT+TGG | + | chr2.3:7310448-7310467 | None:intergenic | 35.0% | |
TGACTTCCCTGAATAAGTTA+AGG | + | chr2.3:7310381-7310400 | None:intergenic | 35.0% | |
TGCTAGTTAGTTGTTGTATC+TGG | + | chr2.3:7310475-7310494 | None:intergenic | 35.0% | |
TGTATCTGGTGAATCAGTTA+AGG | + | chr2.3:7310461-7310480 | None:intergenic | 35.0% | |
TTCATAGGGAAATGCTGAAT+TGG | - | chr2.3:7309732-7309751 | MS.gene058930:intron | 35.0% | |
TTGTAAAGCCTGTAATAAGG+TGG | + | chr2.3:7307276-7307295 | None:intergenic | 35.0% | |
TTGTAAGTTGTGACCTTCAT+GGG | - | chr2.3:7310261-7310280 | MS.gene058930:intron | 35.0% | |
TTTGTAGTGTTGTCAAACAC+TGG | - | chr2.3:7309333-7309352 | MS.gene058930:intron | 35.0% | |
! | AACCTGAAGAATTTAAGGCT+TGG | - | chr2.3:7310697-7310716 | MS.gene058930:intron | 35.0% |
! | ACTCTTGGAACATTTTCATG+AGG | - | chr2.3:7310532-7310551 | MS.gene058930:intron | 35.0% |
! | AGCAACTCTGATTCACATTT+TGG | - | chr2.3:7310112-7310131 | MS.gene058930:intron | 35.0% |
! | ATTTGGACAAACCGCTATTT+TGG | - | chr2.3:7309460-7309479 | MS.gene058930:intron | 35.0% |
! | ATTTTATGCAGAAGCCTCTT+TGG | - | chr2.3:7308901-7308920 | MS.gene058930:intron | 35.0% |
! | CAATGAGTTGGATCCAAATA+TGG | - | chr2.3:7309147-7309166 | MS.gene058930:intron | 35.0% |
! | GTTTCTCGAATGGTTTTCTT+AGG | + | chr2.3:7309106-7309125 | None:intergenic | 35.0% |
! | TAGTTCATCTTCGACAGTTT+TGG | - | chr2.3:7308352-7308371 | MS.gene058930:intron | 35.0% |
! | TCTACATGTTTTCCTACTCT+TGG | - | chr2.3:7310517-7310536 | MS.gene058930:intron | 35.0% |
! | TTATGTTCTAGCTATTAGGC+AGG | + | chr2.3:7310569-7310588 | None:intergenic | 35.0% |
! | TTTTCTTCAGACAAAAAGGC+TGG | + | chr2.3:7309641-7309660 | None:intergenic | 35.0% |
!! | ATATTTTGGACCACCAAAAC+TGG | - | chr2.3:7308726-7308745 | MS.gene058930:CDS | 35.0% |
!! | CTTTCTCTTTTCTTTTCAGG+AGG | - | chr2.3:7311257-7311276 | MS.gene058930:CDS | 35.0% |
!! | GCAAAATAATCCAGTTTTGG+TGG | + | chr2.3:7308739-7308758 | None:intergenic | 35.0% |
!! | TACAAGAGAAGCATTGTCTT+TGG | + | chr2.3:7311167-7311186 | None:intergenic | 35.0% |
!! | TAGGTCCTTTAGAATAGAGT+TGG | + | chr2.3:7309021-7309040 | None:intergenic | 35.0% |
!! | TAGTGCTTTGGAAACTTGAT+TGG | - | chr2.3:7311058-7311077 | MS.gene058930:intron | 35.0% |
!! | TTTGGACAAACCGCTATTTT+GGG | - | chr2.3:7309461-7309480 | MS.gene058930:intron | 35.0% |
!!! | AGACTCTAACTTTTTCACAC+TGG | - | chr2.3:7310339-7310358 | MS.gene058930:intron | 35.0% |
!!! | ATGGAATACTTTTGGGACTT+TGG | + | chr2.3:7308303-7308322 | None:intergenic | 35.0% |
!!! | GACTCTAACTTTTTCACACT+GGG | - | chr2.3:7310340-7310359 | MS.gene058930:intron | 35.0% |
!!! | TGGAATACTTTTGGGACTTT+GGG | + | chr2.3:7308302-7308321 | None:intergenic | 35.0% |
!!! | TTTTTACCTGGTTTTAGCTC+TGG | - | chr2.3:7307591-7307610 | MS.gene058930:intron | 35.0% |
AAGCTGTGGAGGACATAAAT+AGG | - | chr2.3:7310159-7310178 | MS.gene058930:intron | 40.0% | |
ACGATATGATCACACCAAAG+AGG | + | chr2.3:7308918-7308937 | None:intergenic | 40.0% | |
ACTCTCCTTGCATATTGTGA+TGG | + | chr2.3:7309912-7309931 | None:intergenic | 40.0% | |
AGAGACCATCACAATATGCA+AGG | - | chr2.3:7309904-7309923 | MS.gene058930:intron | 40.0% | |
AGTGACTGTTACAGATAGTG+TGG | - | chr2.3:7309277-7309296 | MS.gene058930:intron | 40.0% | |
ATCAGGCTGTGTTCAGTTTA+GGG | - | chr2.3:7308773-7308792 | MS.gene058930:intron | 40.0% | |
ATGGGTGTATGAACCTATGA+GGG | + | chr2.3:7310727-7310746 | None:intergenic | 40.0% | |
CATGACAACTTTGCTGCATT+TGG | - | chr2.3:7307705-7307724 | MS.gene058930:intron | 40.0% | |
CCGTTTATATATACATGGGC+TGG | - | chr2.3:7309602-7309621 | MS.gene058930:intron | 40.0% | |
CTAGTAGAGACACCAAACAT+TGG | + | chr2.3:7309767-7309786 | None:intergenic | 40.0% | |
CTGTCAAATAGCTGCTATAG+CGG | - | chr2.3:7309412-7309431 | MS.gene058930:intron | 40.0% | |
CTTGTAAGTTGTGACCTTCA+TGG | - | chr2.3:7310260-7310279 | MS.gene058930:intron | 40.0% | |
GACCAAGCCTTAAATTCTTC+AGG | + | chr2.3:7310702-7310721 | None:intergenic | 40.0% | |
GAGTTCAGTCTTGCAAAACA+GGG | - | chr2.3:7308825-7308844 | MS.gene058930:intron | 40.0% | |
GCTTTACAAAGATTACGTCC+AGG | - | chr2.3:7307287-7307306 | MS.gene058930:CDS | 40.0% | |
GTACGCCAACTCTATTCTAA+AGG | - | chr2.3:7309013-7309032 | MS.gene058930:intron | 40.0% | |
GTGACTGTTACAGATAGTGT+GGG | - | chr2.3:7309278-7309297 | MS.gene058930:intron | 40.0% | |
GTGGATTTAGTAACCCATGA+AGG | + | chr2.3:7310277-7310296 | None:intergenic | 40.0% | |
TAAAGCCTGTAATAAGGTGG+TGG | + | chr2.3:7307273-7307292 | None:intergenic | 40.0% | |
TAGATTTCAAGAAGGAGCTG+AGG | - | chr2.3:7309826-7309845 | MS.gene058930:intron | 40.0% | |
TAGTGATGTTCTACCAAGCT+TGG | - | chr2.3:7308979-7308998 | MS.gene058930:intron | 40.0% | |
TATCAGGCTGTGTTCAGTTT+AGG | - | chr2.3:7308772-7308791 | MS.gene058930:intron | 40.0% | |
TCCAGAACATCCCAAAATAG+CGG | + | chr2.3:7309474-7309493 | None:intergenic | 40.0% | |
TGAGTTCAGTCTTGCAAAAC+AGG | - | chr2.3:7308824-7308843 | MS.gene058930:intron | 40.0% | |
TGGCAGCAACTCCAATTATT+TGG | - | chr2.3:7308079-7308098 | MS.gene058930:intron | 40.0% | |
TGGTCACAAAAGCCAATGTT+TGG | - | chr2.3:7309752-7309771 | MS.gene058930:intron | 40.0% | |
TGTGTGTAGTCTAGACTTGT+GGG | - | chr2.3:7309685-7309704 | MS.gene058930:intron | 40.0% | |
! | AAGCCTTATCCCATTAAGTG+GGG | + | chr2.3:7309216-7309235 | None:intergenic | 40.0% |
! | CAAGCCTTATCCCATTAAGT+GGG | + | chr2.3:7309217-7309236 | None:intergenic | 40.0% |
! | CAAGTGTCACTGTAATAGCA+GGG | + | chr2.3:7307489-7307508 | None:intergenic | 40.0% |
! | TCAAGCCTTATCCCATTAAG+TGG | + | chr2.3:7309218-7309237 | None:intergenic | 40.0% |
! | TCAAGTGTCACTGTAATAGC+AGG | + | chr2.3:7307490-7307509 | None:intergenic | 40.0% |
! | TGTGCGTAATTCTGAAAGCT+TGG | - | chr2.3:7307616-7307635 | MS.gene058930:intron | 40.0% |
! | TTTGGTGGAGACAAGGATTT+TGG | - | chr2.3:7308370-7308389 | MS.gene058930:intron | 40.0% |
!! | ACCAGAAGCATCCAAATCAA+AGG | + | chr2.3:7310038-7310057 | None:intergenic | 40.0% |
!! | TTCATCTTCGACAGTTTTGG+TGG | - | chr2.3:7308355-7308374 | MS.gene058930:intron | 40.0% |
AAGGAGCTGAGGTCACTTAA+TGG | - | chr2.3:7309837-7309856 | MS.gene058930:intron | 45.0% | |
ACTCAAATGAGTGACCTCCT+AGG | - | chr2.3:7308052-7308071 | MS.gene058930:intron | 45.0% | |
ACTCCTTGTTCTTCCAAGCT+TGG | + | chr2.3:7308995-7309014 | None:intergenic | 45.0% | |
ACTGAACTCAACCTAGCTCA+AGG | + | chr2.3:7308814-7308833 | None:intergenic | 45.0% | |
AGAACGTCGTAAACAAGCTG+TGG | - | chr2.3:7310145-7310164 | MS.gene058930:intron | 45.0% | |
ATGGCAAAACTGGGCAAAGA+AGG | + | chr2.3:7311142-7311161 | None:intergenic | 45.0% | |
CATGGGTGTATGAACCTATG+AGG | + | chr2.3:7310728-7310747 | None:intergenic | 45.0% | |
CTACCAAGCTTGGAAGAACA+AGG | - | chr2.3:7308989-7309008 | MS.gene058930:intron | 45.0% | |
CTCATAGGTTCATACACCCA+TGG | - | chr2.3:7310726-7310745 | MS.gene058930:intron | 45.0% | |
CTGTGTGTAGTCTAGACTTG+TGG | - | chr2.3:7309684-7309703 | MS.gene058930:intron | 45.0% | |
CTTATCCCATTAAGTGGGGT+CGG | + | chr2.3:7309212-7309231 | None:intergenic | 45.0% | |
GACAAAAAGGCTGGAGCTAA+AGG | + | chr2.3:7309632-7309651 | None:intergenic | 45.0% | |
GAGGACGCAGAGAATTCAAA+AGG | + | chr2.3:7309971-7309990 | None:intergenic | 45.0% | |
GAGTCATTGGCAACACTTGA+TGG | - | chr2.3:7311307-7311326 | MS.gene058930:CDS | 45.0% | |
GTGTTGCCAATGACTCGTTA+AGG | + | chr2.3:7311303-7311322 | None:intergenic | 45.0% | |
TAAGTTCCTTCAATCGGTGG+TGG | + | chr2.3:7307336-7307355 | None:intergenic | 45.0% | |
TCAACCTAGCTCAAGGTATG+TGG | + | chr2.3:7308807-7308826 | None:intergenic | 45.0% | |
TCCCAAAATCCTGCCATGAT+GGG | + | chr2.3:7308003-7308022 | None:intergenic | 45.0% | |
TCTTTGGCCATGGCAAAACT+GGG | + | chr2.3:7311151-7311170 | None:intergenic | 45.0% | |
TGGCAAAACTGGGCAAAGAA+GGG | + | chr2.3:7311141-7311160 | None:intergenic | 45.0% | |
TGGGAATGGTTTGACTCATG+AGG | - | chr2.3:7308018-7308037 | MS.gene058930:intron | 45.0% | |
TTCCCAAAATCCTGCCATGA+TGG | + | chr2.3:7308004-7308023 | None:intergenic | 45.0% | |
! | ACTTGTGGGCCTGATCTTTT+AGG | - | chr2.3:7309699-7309718 | MS.gene058930:intron | 45.0% |
! | TCCCATCATGGCAGGATTTT+GGG | - | chr2.3:7307999-7308018 | MS.gene058930:intron | 45.0% |
! | TTCTTTGCCCAGTTTTGCCA+TGG | - | chr2.3:7311141-7311160 | MS.gene058930:intron | 45.0% |
!! | ACACTGGTGCTATAGCATTG+CGG | - | chr2.3:7309349-7309368 | MS.gene058930:intron | 45.0% |
!! | AGAAGCATTGTCTTTGGCCA+TGG | + | chr2.3:7311161-7311180 | None:intergenic | 45.0% |
!! | GCCTTTGATTTGGATGCTTC+TGG | - | chr2.3:7310034-7310053 | MS.gene058930:intron | 45.0% |
!! | TCATGGCAGGATTTTGGGAA+TGG | - | chr2.3:7308004-7308023 | MS.gene058930:intron | 45.0% |
!! | TGTAATAAGGTGGTGGTGGT+GGG | + | chr2.3:7307266-7307285 | None:intergenic | 45.0% |
!!! | ACCGCTATTTTGGGATGTTC+TGG | - | chr2.3:7309470-7309489 | MS.gene058930:intron | 45.0% |
!!! | ATTTTTTTTTTTAATTTCAT+TGG | - | chr2.3:7310200-7310219 | MS.gene058930:intron | 5.0% |
ACGTCGTAAACAAGCTGTGG+AGG | - | chr2.3:7310148-7310167 | MS.gene058930:intron | 50.0% | |
ATGTAGCCGACCCCACTTAA+TGG | - | chr2.3:7309203-7309222 | MS.gene058930:intron | 50.0% | |
ATTAAGTGGGGTCGGCTACA+TGG | + | chr2.3:7309204-7309223 | None:intergenic | 50.0% | |
CACATGCCAGAGCTAAAACC+AGG | + | chr2.3:7307600-7307619 | None:intergenic | 50.0% | |
CACCACCACCACCTTATTAC+AGG | - | chr2.3:7307265-7307284 | MS.gene058930:CDS | 50.0% | |
CCAACCACATACCTTGAGCT+AGG | - | chr2.3:7308800-7308819 | MS.gene058930:intron | 50.0% | |
CCTAGCTCAAGGTATGTGGT+TGG | + | chr2.3:7308803-7308822 | None:intergenic | 50.0% | |
CGACCCCACTTAATGGGATA+AGG | - | chr2.3:7309210-7309229 | MS.gene058930:intron | 50.0% | |
CTGGGCAAAGAAGGGAGAAA+TGG | + | chr2.3:7311133-7311152 | None:intergenic | 50.0% | |
GAATTCTCTGCGTCCTCATC+AGG | - | chr2.3:7309974-7309993 | MS.gene058930:intron | 50.0% | |
GCTAGAGAAAGCTCCCATCA+TGG | - | chr2.3:7307987-7308006 | MS.gene058930:intron | 50.0% | |
GGTGTATGAACCTATGAGGG+AGG | + | chr2.3:7310724-7310743 | None:intergenic | 50.0% | |
GTCTTTGGCCATGGCAAAAC+TGG | + | chr2.3:7311152-7311171 | None:intergenic | 50.0% | |
TCTCTAGCACTAAGCCCCTT+CGG | + | chr2.3:7307975-7307994 | None:intergenic | 50.0% | |
TGAGTGACCTCCTAGGCATA+TGG | - | chr2.3:7308059-7308078 | MS.gene058930:intron | 50.0% | |
TGGGACTTTGGGTACCTATC+CGG | + | chr2.3:7308291-7308310 | None:intergenic | 50.0% | |
TGTAGCCGACCCCACTTAAT+GGG | - | chr2.3:7309204-7309223 | MS.gene058930:intron | 50.0% | |
! | AGCCTGTAATAAGGTGGTGG+TGG | + | chr2.3:7307270-7307289 | None:intergenic | 50.0% |
! | CTCCCATCATGGCAGGATTT+TGG | - | chr2.3:7307998-7308017 | MS.gene058930:intron | 50.0% |
!! | CGACAGTTTTGGTGGAGACA+AGG | - | chr2.3:7308363-7308382 | MS.gene058930:intron | 50.0% |
!! | CTGTAATAAGGTGGTGGTGG+TGG | + | chr2.3:7307267-7307286 | None:intergenic | 50.0% |
GAGAAAGCTCCCATCATGGC+AGG | - | chr2.3:7307991-7308010 | MS.gene058930:intron | 55.0% | |
GGAGTTGCTGCCATATGCCT+AGG | + | chr2.3:7308072-7308091 | None:intergenic | 55.0% | |
GTTGCTGCCATATGCCTAGG+AGG | + | chr2.3:7308069-7308088 | None:intergenic | 55.0% | |
TCGGAGGCAGTTACACTGTG+AGG | - | chr2.3:7307364-7307383 | MS.gene058930:intron | 55.0% | |
! | AAGGCTTGGTCCTCCCTCAT+AGG | - | chr2.3:7310711-7310730 | MS.gene058930:intron | 55.0% |
! | GTTCCTTCAATCGGTGGTGG+AGG | + | chr2.3:7307333-7307352 | None:intergenic | 55.0% |
! | GAGCCTCCACCACCGATTGA+AGG | - | chr2.3:7307327-7307346 | MS.gene058930:intron | 60.0% |
!! | GAGGCTCTGGAGCAGACTCA+GGG | + | chr2.3:7307314-7307333 | None:intergenic | 60.0% |
!! | TCAATCGGTGGTGGAGGCTC+TGG | + | chr2.3:7307327-7307346 | None:intergenic | 60.0% |
CTGGAGCAGACTCAGGGTCC+TGG | + | chr2.3:7307308-7307327 | None:intergenic | 65.0% | |
!! | GGAGGCTCTGGAGCAGACTC+AGG | + | chr2.3:7307315-7307334 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 7307246 | 7311336 | 7307246 | ID=MS.gene058930 |
chr2.3 | mRNA | 7307246 | 7311336 | 7307246 | ID=MS.gene058930.t1;Parent=MS.gene058930 |
chr2.3 | exon | 7311202 | 7311336 | 7311202 | ID=MS.gene058930.t1.exon1;Parent=MS.gene058930.t1 |
chr2.3 | CDS | 7311202 | 7311336 | 7311202 | ID=cds.MS.gene058930.t1;Parent=MS.gene058930.t1 |
chr2.3 | exon | 7309536 | 7309605 | 7309536 | ID=MS.gene058930.t1.exon2;Parent=MS.gene058930.t1 |
chr2.3 | CDS | 7309536 | 7309605 | 7309536 | ID=cds.MS.gene058930.t1;Parent=MS.gene058930.t1 |
chr2.3 | exon | 7308587 | 7308753 | 7308587 | ID=MS.gene058930.t1.exon3;Parent=MS.gene058930.t1 |
chr2.3 | CDS | 7308587 | 7308753 | 7308587 | ID=cds.MS.gene058930.t1;Parent=MS.gene058930.t1 |
chr2.3 | exon | 7308402 | 7308475 | 7308402 | ID=MS.gene058930.t1.exon4;Parent=MS.gene058930.t1 |
chr2.3 | CDS | 7308402 | 7308475 | 7308402 | ID=cds.MS.gene058930.t1;Parent=MS.gene058930.t1 |
chr2.3 | exon | 7307246 | 7307306 | 7307246 | ID=MS.gene058930.t1.exon5;Parent=MS.gene058930.t1 |
chr2.3 | CDS | 7307246 | 7307306 | 7307246 | ID=cds.MS.gene058930.t1;Parent=MS.gene058930.t1 |
Gene Sequence |
Protein sequence |