AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059001

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059001.t1 MTR_1g069020 90.713 603 45 2 1 598 1 597 0.0 1086
MS.gene059001.t1 MTR_1g069015 67.908 349 106 2 241 583 131 479 2.12e-149 441
MS.gene059001.t1 MTR_1g069015 59.312 349 133 3 1 343 1 346 1.76e-130 392
MS.gene059001.t1 MTR_7g039520 37.324 142 72 6 1 133 1 134 4.25e-15 77.4
MS.gene059001.t1 MTR_5g040080 37.324 142 72 6 1 133 1 134 4.65e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059001.t1 AT5G02520 43.103 116 63 3 17 130 11 125 1.21e-21 99.8
MS.gene059001.t1 AT5G02520 43.103 116 63 3 17 130 11 125 1.23e-21 99.8
MS.gene059001.t1 AT5G02520 43.103 116 63 3 17 130 11 125 1.56e-21 99.4
MS.gene059001.t1 AT1G58210 40.217 92 51 1 23 114 64 151 1.72e-15 77.8

Find 151 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCATCAGATAATATTTC+TGG 0.175942 1.2:+51755857 None:intergenic
TTACCATCAAATGATATTTC+TGG 0.188236 1.2:+51756270 None:intergenic
AATGGAGTCTTGCAATTCTC+TGG 0.210078 1.2:+51756537 None:intergenic
CAGTAGCAGGTTGCTTCTTC+TGG 0.230387 1.2:+51755539 None:intergenic
CATATGCAGGCTGCTTCTTC+TGG 0.231464 1.2:+51755984 None:intergenic
CAATTCTCTGGGGCCTCTTC+AGG 0.246287 1.2:+51756549 None:intergenic
TTCTACCTCCCTTAGAGTTT+TGG 0.256165 1.2:-51754898 MS.gene059001:CDS
TCTTTATCTGGATGTGTTGC+AGG 0.273995 1.2:+51755511 None:intergenic
TGATTCAGGCAATGCTGTTT+TGG 0.274385 1.2:-51756761 MS.gene059001:CDS
AGATTTGCTGGTACATTATC+AGG 0.278683 1.2:+51756294 None:intergenic
ATTGGAAAATTTACCAGATC+TGG 0.281653 1.2:+51755150 None:intergenic
GATATTTCTGGAAGATTTGC+TGG 0.294734 1.2:+51756282 None:intergenic
AAATTCTGTTCCTACGTCTT+TGG 0.304145 1.2:-51756137 MS.gene059001:CDS
TCACATACCATGTTATAAAT+AGG 0.311211 1.2:+51754863 None:intergenic
ACATATCTTGTTCATCTTCA+AGG 0.335841 1.2:+51756089 None:intergenic
CCGTGAGATTACAGAAATTC+AGG 0.340294 1.2:-51754764 MS.gene059001:CDS
TCAGAAACCGGTACTGATTC+AGG 0.341135 1.2:-51756775 MS.gene059001:CDS
TTGATTGCGCCAAAACTCTA+AGG 0.343897 1.2:+51754889 None:intergenic
AGATTCGTTGATACATTATC+AGG 0.360747 1.2:+51755881 None:intergenic
GTAGAGCTCTGCTCTTTCTC+TGG 0.362481 1.2:+51755944 None:intergenic
CTTCCAGAAATATCATTTGA+TGG 0.363684 1.2:-51756273 MS.gene059001:intron
GGAAGAGTAAACACAATGTC+TGG 0.368000 1.2:-51755409 MS.gene059001:CDS
GCAGAGATCTGGTCTTTATC+TGG 0.371673 1.2:+51755499 None:intergenic
TGAGACTTTGCATTCATCTC+CGG 0.373003 1.2:+51756512 None:intergenic
GGTTGTGGAAAATCATGATT+TGG 0.381883 1.2:-51755915 MS.gene059001:CDS
AATGATGAAGAGCCTCTAAA+AGG 0.383621 1.2:+51754721 None:intergenic
ACATATCCCGTTCATCTTTG+AGG 0.399307 1.2:+51755644 None:intergenic
AAACAGTGCACACTGGATAA+TGG 0.412705 1.2:-51757000 MS.gene059001:CDS
ATTCAAAACGGAGGAGAAAC+AGG 0.413111 1.2:+51753947 None:intergenic
GTTGATATTGCTTGTGGTAG+TGG 0.415196 1.2:-51756474 MS.gene059001:CDS
ATGGAGTCTTGCAATTCTCT+GGG 0.433444 1.2:+51756538 None:intergenic
ATTCAGGGAAGAAGCGGTTC+GGG 0.436502 1.2:-51757115 MS.gene059001:intron
TCCTACTTCTTTGTTATCAC+CGG 0.437184 1.2:-51755698 MS.gene059001:CDS
TTTAGAGGCTCTTCATCATT+GGG 0.442092 1.2:-51754718 MS.gene059001:CDS
GATCTCTGCCTCAGCAGCCT+TGG 0.442994 1.2:-51755485 MS.gene059001:CDS
GACCATGGGAGATCGCAATA+AGG 0.444355 1.2:-51755671 MS.gene059001:CDS
CAGAAGAAGCAACCTGCTAC+TGG 0.444849 1.2:-51755538 MS.gene059001:CDS
GATTCAGGGAAGAAGCGGTT+CGG 0.448672 1.2:-51757116 MS.gene059001:intron
GGCACTCCTCAAAGATGAAC+GGG 0.449784 1.2:-51755650 MS.gene059001:CDS
AGTGAGGTCAACGATGTTCA+TGG 0.454444 1.2:-51756055 MS.gene059001:CDS
GTCAATGTTGTTCATGGTAG+TGG 0.459300 1.2:-51755604 MS.gene059001:CDS
CTTCCCTTTAGTGATTGAAC+GGG 0.460633 1.2:+51755427 None:intergenic
CAGAAGAAGCAGCCTGCATA+TGG 0.461694 1.2:-51755983 MS.gene059001:CDS
TTCTTCTCGCTTCCAACGAA+CGG 0.463185 1.2:-51757643 MS.gene059001:CDS
GCAGGTTGCTTCTTCTGGTA+GGG 0.464478 1.2:+51755544 None:intergenic
GAGACTTTGCATTCATCTCC+GGG 0.467675 1.2:+51756513 None:intergenic
CGATCTCCCATGGTCTTATC+CGG 0.467896 1.2:+51755679 None:intergenic
GGTAGGGTCAATGTTGTTCA+TGG 0.469284 1.2:-51755610 MS.gene059001:CDS
TTGCATTCATCTCCGGGGAA+TGG 0.473283 1.2:+51756519 None:intergenic
ACGGCCTTTGAGGTAGAGCT+TGG 0.476441 1.2:+51756345 None:intergenic
GCGAGAAGAAGAAGAAGGTG+TGG 0.480733 1.2:+51757656 None:intergenic
GAGCTCTACCTTGAAGGTTG+TGG 0.482477 1.2:-51755930 MS.gene059001:CDS
GAACGGTTACATTATACGAT+TGG 0.482529 1.2:-51757626 MS.gene059001:CDS
CTCGATGTAGGATGCTGCTT+CGG 0.487404 1.2:+51756396 None:intergenic
AACACCCGTTCAATCACTAA+AGG 0.487435 1.2:-51755431 MS.gene059001:CDS
AGGCTGCTGAGGCAGAGATC+TGG 0.487795 1.2:+51755488 None:intergenic
AGCAGGTTGCTTCTTCTGGT+AGG 0.488235 1.2:+51755543 None:intergenic
CGAGAAGAAGAAGAAGGTGT+GGG 0.490234 1.2:+51757657 None:intergenic
GTCAACGATGTTCATGGTAG+TGG 0.490994 1.2:-51756049 MS.gene059001:CDS
AAAGTCTCAAAGAAGATGAC+TGG 0.494908 1.2:-51756498 MS.gene059001:CDS
TCTTCCCTTTAGTGATTGAA+CGG 0.501287 1.2:+51755426 None:intergenic
TTATCAGGAACAACAGTATC+CGG 0.501961 1.2:+51756309 None:intergenic
TCTTTCTCTGGATTCTTGAG+AGG 0.504491 1.2:+51755956 None:intergenic
GGCCGTCGAAAATCATGATC+CGG 0.505332 1.2:-51756328 MS.gene059001:CDS
AGAGCAGAGCTCTACCTTGA+AGG 0.508453 1.2:-51755936 MS.gene059001:CDS
ACACCCGTTCAATCACTAAA+GGG 0.517548 1.2:-51755430 MS.gene059001:CDS
AGTCCTTAGTACTATGCAAC+CGG 0.517646 1.2:+51756008 None:intergenic
GAGGCTCTTCATCATTGGGC+AGG 0.522623 1.2:-51754714 MS.gene059001:intron
TGCCTTATTGCGATCTCCCA+TGG 0.525598 1.2:+51755669 None:intergenic
ACCGGCCACTACGTCTAGTC+CGG 0.527410 1.2:+51756026 None:intergenic
CGTATAATGTAACCGTTCGT+TGG 0.528108 1.2:+51757631 None:intergenic
CGGTTACATTATACGATTGG+TGG 0.540059 1.2:-51757623 MS.gene059001:CDS
TTGAGAGGATCTCCATATGC+AGG 0.543432 1.2:+51755971 None:intergenic
GGAAATGACTGATGGAGGAC+TGG 0.545081 1.2:-51755464 MS.gene059001:CDS
TGCTGACAGTGGATTCAAAA+CGG 0.547756 1.2:+51753935 None:intergenic
GACTTTAATATTATGCAACC+TGG 0.548218 1.2:+51756434 None:intergenic
GAATAATTAGTGATGCCGTT+CGG 0.548798 1.2:-51753995 MS.gene059001:CDS
TATCAAGGAACTTTCTCTGA+CGG 0.548904 1.2:-51756721 MS.gene059001:intron
AGACGCCGGAGATGGCTAAA+CGG 0.549320 1.2:+51757571 None:intergenic
TCAGGCAATACCGACGAAGT+AGG 0.550175 1.2:+51756567 None:intergenic
CCTGAATTTCTGTAATCTCA+CGG 0.553835 1.2:+51754764 None:intergenic
TGGCCGGTTGCATAGTACTA+AGG 0.554205 1.2:-51756011 MS.gene059001:CDS
GTTAGAGAACAATCAGAAAC+CGG 0.557595 1.2:-51756787 MS.gene059001:CDS
AACCACCGTTTAGCCATCTC+CGG 0.558688 1.2:-51757576 MS.gene059001:CDS
GTTGCAGGATCTCCAGTAGC+AGG 0.559749 1.2:+51755526 None:intergenic
GCAGCCTTGGAAATGACTGA+TGG 0.560856 1.2:-51755472 MS.gene059001:CDS
TGTGGAAGAGACGCCGGAGA+TGG 0.563212 1.2:+51757563 None:intergenic
AGCATTGCCTGAATCAGTAC+CGG 0.564171 1.2:+51756768 None:intergenic
AGTAAACACAATGTCTGGGC+AGG 0.565926 1.2:-51755404 MS.gene059001:CDS
AAGTCTCAAAGAAGATGACT+GGG 0.565959 1.2:-51756497 MS.gene059001:CDS
TCCGGTGATAACAAAGAAGT+AGG 0.566020 1.2:+51755697 None:intergenic
TTGAGAGGACCTCTCGATGT+AGG 0.566402 1.2:+51756384 None:intergenic
CGGGATATGTCAATTAAGAC+GGG 0.568225 1.2:-51755631 MS.gene059001:CDS
GAGAAGAAGAAGAAGGTGTG+GGG 0.570479 1.2:+51757658 None:intergenic
ACGGGATATGTCAATTAAGA+CGG 0.571346 1.2:-51755632 MS.gene059001:CDS
ATATGTCAATTAAGACGGGT+AGG 0.573298 1.2:-51755627 MS.gene059001:CDS
AATTGCAAGACTCCATTCCC+CGG 0.573734 1.2:-51756531 MS.gene059001:CDS
AAACGGAGGAGAAACAGGCT+TGG 0.575013 1.2:+51753952 None:intergenic
CTGTAAAATCTCCTCAAGGA+AGG 0.576048 1.2:-51755249 MS.gene059001:CDS
TCTTCATCTGAACGCTTGAG+AGG 0.576282 1.2:+51756369 None:intergenic
GAATGTAAGTCACTCGAACA+AGG 0.577107 1.2:-51755227 MS.gene059001:CDS
CAATACCGACGAAGTAGGAA+TGG 0.577162 1.2:+51756572 None:intergenic
TGACTTACATTCCTTCCTTG+AGG 0.583902 1.2:+51755238 None:intergenic
ATGTTGTTCATGGTAGTGGC+GGG 0.588592 1.2:-51755600 MS.gene059001:CDS
ACGATGTTCATGGTAGTGGC+CGG 0.588769 1.2:-51756045 MS.gene059001:CDS
AGTCATTTCCAAGGCTGCTG+AGG 0.594162 1.2:+51755477 None:intergenic
CTTCCAGAAATATTATCTGA+TGG 0.594536 1.2:-51755860 MS.gene059001:intron
GAAGAGTAAACACAATGTCT+GGG 0.597995 1.2:-51755408 MS.gene059001:CDS
CATTAATAAACAGTGCACAC+TGG 0.598333 1.2:-51757007 MS.gene059001:CDS
TGGAAGCGAGAAGAAGAAGA+AGG 0.598890 1.2:+51757651 None:intergenic
AATGTAAGTCACTCGAACAA+GGG 0.601122 1.2:-51755226 MS.gene059001:CDS
TCCTCCATCAGTCATTTCCA+AGG 0.602323 1.2:+51755468 None:intergenic
AGGCACTCCTCAAAGATGAA+CGG 0.602783 1.2:-51755651 MS.gene059001:CDS
AATGTTGTTCATGGTAGTGG+CGG 0.603017 1.2:-51755601 MS.gene059001:CDS
TGATTGCGCCAAAACTCTAA+GGG 0.604798 1.2:+51754890 None:intergenic
GTTATCACCGGATAAGACCA+TGG 0.605592 1.2:-51755686 MS.gene059001:CDS
TTTATCTAATCTGCTGACAG+TGG 0.605986 1.2:+51753924 None:intergenic
GCCTTGGAAATGACTGATGG+AGG 0.606817 1.2:-51755469 MS.gene059001:CDS
GTTTCCCTTGAGACTGTCGA+TGG 0.607459 1.2:-51757054 MS.gene059001:CDS
GTCGTGATTCAGGGAAGAAG+CGG 0.608062 1.2:-51757121 MS.gene059001:intron
ACTGGGGTTGATATTGCTTG+TGG 0.609410 1.2:-51756480 MS.gene059001:CDS
ATATACCATCGACAGTCTCA+AGG 0.611734 1.2:+51757049 None:intergenic
AAAGTCCATTCCTACTTCGT+CGG 0.616794 1.2:-51756577 MS.gene059001:CDS
AGAGCCAAGCTCTACCTCAA+AGG 0.621891 1.2:-51756349 MS.gene059001:CDS
TATGTCAATTAAGACGGGTA+GGG 0.624553 1.2:-51755626 MS.gene059001:CDS
TTATCACCGGATAAGACCAT+GGG 0.624895 1.2:-51755685 MS.gene059001:CDS
TCTTCTGTAAAATCTCCTCA+AGG 0.626237 1.2:-51755253 MS.gene059001:CDS
TTCGTCGGTATTGCCTGAAG+AGG 0.626897 1.2:-51756562 MS.gene059001:CDS
TATACCATCGACAGTCTCAA+GGG 0.636705 1.2:+51757050 None:intergenic
CAATGACTCTGGAGAAACTG+TGG 0.637102 1.2:+51755186 None:intergenic
TGGCTCGTTAAATCATCTCA+AGG 0.637214 1.2:-51757603 MS.gene059001:CDS
GCCGGACTAGACGTAGTGGC+CGG 0.638720 1.2:-51756027 MS.gene059001:CDS
TCAACAACCTATTTATAACA+TGG 0.640146 1.2:-51754870 MS.gene059001:intron
AGAAGAAGAAGAAGGTGTGG+GGG 0.640744 1.2:+51757659 None:intergenic
GAGATTACAGAAATTCAGGA+AGG 0.641599 1.2:-51754760 MS.gene059001:CDS
GGCGACAATTGAAACAGAAG+CGG 0.644820 1.2:-51755308 MS.gene059001:CDS
TCACTTTGTGGAAGAGACGC+CGG 0.644826 1.2:+51757557 None:intergenic
GCGGGAATAGACGTAGTGCT+CGG 0.648305 1.2:-51755582 MS.gene059001:CDS
TGGAGTCTTGCAATTCTCTG+GGG 0.655923 1.2:+51756539 None:intergenic
AAGCAGCATCCTACATCGAG+AGG 0.662773 1.2:-51756393 MS.gene059001:CDS
TATGTCAATTAAGATGAGTG+AGG 0.667369 1.2:-51756071 MS.gene059001:CDS
CGCCGGAGATGGCTAAACGG+TGG 0.689679 1.2:+51757574 None:intergenic
CTTATGCGTCTCATACCGAA+CGG 0.690539 1.2:+51753980 None:intergenic
TATTATCAAAAGATATGACG+AGG 0.697882 1.2:-51757076 MS.gene059001:CDS
AGACTTTGCATTCATCTCCG+GGG 0.700085 1.2:+51756514 None:intergenic
TTGCGCCAAAACTCTAAGGG+AGG 0.703796 1.2:+51754893 None:intergenic
AGTGGCCGGACTAGACGTAG+TGG 0.713698 1.2:-51756031 MS.gene059001:CDS
GGGGTGCAATTAGAAGAACT+GGG 0.727442 1.2:+51757678 None:intergenic
TGACAGTGGATTCAAAACGG+AGG 0.749553 1.2:+51753938 None:intergenic
TCTCTCGTGACCAAAGACGT+AGG 0.753414 1.2:+51756127 None:intergenic
AGTCTCAAAGAAGATGACTG+GGG 0.760575 1.2:-51756496 MS.gene059001:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAAAAAAAAAATCTAA+AGG + chr1.2:51757145-51757164 None:intergenic 10.0%
!! AAAGATGTTATAAGAAAAAA+AGG - chr1.2:51756292-51756311 MS.gene059001:CDS 15.0%
!! AAGATGTTATAAGAAAAAAA+GGG - chr1.2:51756293-51756312 MS.gene059001:CDS 15.0%
!! GTAAAAAAAAAAACAATGAT+TGG + chr1.2:51756493-51756512 None:intergenic 15.0%
!!! AATAGATGATCTTATAATTT+TGG - chr1.2:51757278-51757297 MS.gene059001:intron 15.0%
!!! ATACTTTTTGTTAATTTCAT+CGG - chr1.2:51754269-51754288 MS.gene059001:intron 15.0%
!!! ATTTTCAAGAGTTTTTTATT+TGG - chr1.2:51754775-51754794 MS.gene059001:intron 15.0%
!!! TTTCTTTATGTTATTTTTGA+AGG - chr1.2:51757107-51757126 MS.gene059001:CDS 15.0%
!!! TTTTTTCTTATAACATCTTT+TGG + chr1.2:51756292-51756311 None:intergenic 15.0%
!! AAAAAAAAATCTAAAGGAAC+TGG + chr1.2:51757139-51757158 None:intergenic 20.0%
!! AAAAAAACAAAAATCCATCA+GGG + chr1.2:51754737-51754756 None:intergenic 20.0%
!! AATATAAAAAACAGTTACTG+TGG - chr1.2:51754442-51754461 MS.gene059001:intron 20.0%
!! CTATTCCAAAGATTAAATAA+TGG + chr1.2:51757263-51757282 None:intergenic 20.0%
!! GAGTGTATATATTATCAATT+AGG + chr1.2:51756562-51756581 None:intergenic 20.0%
!! GTTAACACTAAACTATAAAT+TGG - chr1.2:51754330-51754349 MS.gene059001:intron 20.0%
!! TATTAAGATATAGAAACTGT+AGG + chr1.2:51755870-51755889 None:intergenic 20.0%
!! TTACTCTATTCTTTATGTTT+GGG - chr1.2:51756681-51756700 MS.gene059001:intron 20.0%
!! TTTACTCTATTCTTTATGTT+TGG - chr1.2:51756680-51756699 MS.gene059001:intron 20.0%
!!! AATGAATTTGCATTTTATCA+AGG - chr1.2:51754886-51754905 MS.gene059001:CDS 20.0%
!!! ATCGGTTTTGAATTTATTTT+TGG - chr1.2:51754287-51754306 MS.gene059001:intron 20.0%
!!! ATGGTATATATGTTTTGATT+AGG - chr1.2:51754587-51754606 MS.gene059001:intron 20.0%
!!! GAGAATTTTTTAAGTTAGTT+GGG + chr1.2:51757028-51757047 None:intergenic 20.0%
!!! GGTTTAATAATTTTTCTCTT+AGG + chr1.2:51756345-51756364 None:intergenic 20.0%
!!! GTTTTATTAATTTTTGTAGC+AGG - chr1.2:51755016-51755035 MS.gene059001:intron 20.0%
!!! TATAATTTTGGAATGATACT+TGG - chr1.2:51757290-51757309 MS.gene059001:intron 20.0%
!!! TGAGAATTTTTTAAGTTAGT+TGG + chr1.2:51757029-51757048 None:intergenic 20.0%
!!! TGGTATATATGTTTTGATTA+GGG - chr1.2:51754588-51754607 MS.gene059001:intron 20.0%
!!! TGTTTTTTTCTTCTATTTCA+TGG - chr1.2:51754748-51754767 MS.gene059001:CDS 20.0%
! AAAAAACAAAAATCCATCAG+GGG + chr1.2:51754736-51754755 None:intergenic 25.0%
! AAAAATGCTAACAATAGCAT+TGG + chr1.2:51756632-51756651 None:intergenic 25.0%
! AAGAAACATTCTAAATAAGC+TGG + chr1.2:51757093-51757112 None:intergenic 25.0%
! AATCTTGTTGAATCAGAAAT+TGG - chr1.2:51754157-51754176 MS.gene059001:intron 25.0%
! AGAAACATTCTAAATAAGCT+GGG + chr1.2:51757092-51757111 None:intergenic 25.0%
! CTTCATGAATAAACAATGAT+TGG + chr1.2:51756524-51756543 None:intergenic 25.0%
! GAAAAAAACAAAAATCCATC+AGG + chr1.2:51754738-51754757 None:intergenic 25.0%
! GACAATTACTATTCTAACAT+TGG + chr1.2:51757454-51757473 None:intergenic 25.0%
! GGTAATAGTAATTGTTTACT+GGG - chr1.2:51757195-51757214 MS.gene059001:intron 25.0%
! TATTATCAAAAGATATGACG+AGG - chr1.2:51754546-51754565 MS.gene059001:intron 25.0%
! TCAACAACCTATTTATAACA+TGG - chr1.2:51756752-51756771 MS.gene059001:CDS 25.0%
! TCACATACCATGTTATAAAT+AGG + chr1.2:51756762-51756781 None:intergenic 25.0%
! TGGTAATAGTAATTGTTTAC+TGG - chr1.2:51757194-51757213 MS.gene059001:intron 25.0%
! TTACCATCAAATGATATTTC+TGG + chr1.2:51755355-51755374 None:intergenic 25.0%
! TTACCATCAGATAATATTTC+TGG + chr1.2:51755768-51755787 None:intergenic 25.0%
! TTCTGATTCAACAAGATTAT+TGG + chr1.2:51754155-51754174 None:intergenic 25.0%
!! ATTGTTAGCATTTTTGTACA+TGG - chr1.2:51756637-51756656 MS.gene059001:intron 25.0%
!! TAATTAACTGGCTTCAATAT+TGG - chr1.2:51757529-51757548 MS.gene059001:intron 25.0%
!! TTCATAAGTGTCAATGTTTT+TGG - chr1.2:51754665-51754684 MS.gene059001:intron 25.0%
!! TTGCAAGATATTGTTGATAA+TGG - chr1.2:51754697-51754716 MS.gene059001:intron 25.0%
!! TTTGTTATGGTTATTGCTAT+TGG - chr1.2:51757174-51757193 MS.gene059001:intron 25.0%
!!! AGTATTAAGTATTGAAAGTC+AGG + chr1.2:51754254-51754273 None:intergenic 25.0%
!!! GGTATATATGTTTTGATTAG+GGG - chr1.2:51754589-51754608 MS.gene059001:intron 25.0%
!!! TCGTCATATCTTTTGATAAT+AGG + chr1.2:51754547-51754566 None:intergenic 25.0%
!!! TTATGTTTGGGTTATTTTGT+AGG - chr1.2:51756693-51756712 MS.gene059001:intron 25.0%
ACACTTATGAATACAAACCT+GGG + chr1.2:51754656-51754675 None:intergenic 30.0%
ACATATCTTGTTCATCTTCA+AGG + chr1.2:51755536-51755555 None:intergenic 30.0%
ACATTTAATGTCGTGATTCA+GGG - chr1.2:51754492-51754511 MS.gene059001:intron 30.0%
AGATTCGTTGATACATTATC+AGG + chr1.2:51755744-51755763 None:intergenic 30.0%
AGTCTAAAAAAATCCAGATC+TGG - chr1.2:51756459-51756478 MS.gene059001:CDS 30.0%
ATTGGAAAATTTACCAGATC+TGG + chr1.2:51756475-51756494 None:intergenic 30.0%
CTTCCAGAAATATCATTTGA+TGG - chr1.2:51755349-51755368 MS.gene059001:CDS 30.0%
CTTCCAGAAATATTATCTGA+TGG - chr1.2:51755762-51755781 MS.gene059001:intron 30.0%
GAAACATTCTAAATAAGCTG+GGG + chr1.2:51757091-51757110 None:intergenic 30.0%
GACGGTAAATATTTCGATAA+TGG - chr1.2:51754919-51754938 MS.gene059001:intron 30.0%
GACTTTAATATTATGCAACC+TGG + chr1.2:51755191-51755210 None:intergenic 30.0%
GATATAGAAACTGTAGGTAT+AGG + chr1.2:51755864-51755883 None:intergenic 30.0%
GCAATATATGGGTAATTAAC+TGG - chr1.2:51757517-51757536 MS.gene059001:intron 30.0%
GTTACTTGAGTTAATCGTAT+AGG - chr1.2:51754181-51754200 MS.gene059001:intron 30.0%
TACAAGTACAACAGCAAAAT+CGG + chr1.2:51757339-51757358 None:intergenic 30.0%
TACTAAGATATAGAGACTGT+AGG + chr1.2:51755440-51755459 None:intergenic 30.0%
TAGATTGTAAATCTTCCAGT+AGG + chr1.2:51756797-51756816 None:intergenic 30.0%
TATGTCAATTAAGATGAGTG+AGG - chr1.2:51755551-51755570 MS.gene059001:CDS 30.0%
! ATGCGAGTTTTGCAATATAT+GGG - chr1.2:51757506-51757525 MS.gene059001:intron 30.0%
! ATTAATTTTTGTAGCAGGTG+AGG - chr1.2:51755021-51755040 MS.gene059001:intron 30.0%
! CAAAGATTAAATAATGGAGC+CGG + chr1.2:51757257-51757276 None:intergenic 30.0%
! TATGCGAGTTTTGCAATATA+TGG - chr1.2:51757505-51757524 MS.gene059001:intron 30.0%
! TCTTTGATATCACCTTTTAG+AGG - chr1.2:51756889-51756908 MS.gene059001:intron 30.0%
!! AAGTATTGAAAGTCAGGTTT+GGG + chr1.2:51754248-51754267 None:intergenic 30.0%
!! CTATTTGATCAGCTTTGTTA+TGG - chr1.2:51757161-51757180 MS.gene059001:intron 30.0%
!! TAAGTATTGAAAGTCAGGTT+TGG + chr1.2:51754249-51754268 None:intergenic 30.0%
!!! AGTTGTATTTTGAAACATGC+CGG - chr1.2:51757401-51757420 MS.gene059001:intron 30.0%
!!! ATAAGTGTCAATGTTTTTGG+TGG - chr1.2:51754668-51754687 MS.gene059001:intron 30.0%
!!! ATTTGGCTTTTCTGAAAACT+GGG - chr1.2:51754792-51754811 MS.gene059001:intron 30.0%
!!! TATTTGGCTTTTCTGAAAAC+TGG - chr1.2:51754791-51754810 MS.gene059001:intron 30.0%
!!! TCTTTTGGTTTTTGCTGAAA+AGG + chr1.2:51756277-51756296 None:intergenic 30.0%
!!! TGAAAAGGTTTTGGAAATTC+TGG + chr1.2:51756262-51756281 None:intergenic 30.0%
!!! TTTTTTAGACTCAATGACTC+TGG + chr1.2:51756450-51756469 None:intergenic 30.0%
AAAGTCTCAAAGAAGATGAC+TGG - chr1.2:51755124-51755143 MS.gene059001:intron 35.0%
AAATTCTGTTCCTACGTCTT+TGG - chr1.2:51755485-51755504 MS.gene059001:CDS 35.0%
AACAATTCAGTGCCTTAATG+TGG - chr1.2:51757584-51757603 MS.gene059001:CDS 35.0%
AAGTCTCAAAGAAGATGACT+GGG - chr1.2:51755125-51755144 MS.gene059001:intron 35.0%
AATGATGAAGAGCCTCTAAA+AGG + chr1.2:51756904-51756923 None:intergenic 35.0%
AATGTAAGTCACTCGAACAA+GGG - chr1.2:51756396-51756415 MS.gene059001:CDS 35.0%
ACAAGTACAACAGCAAAATC+GGG + chr1.2:51757338-51757357 None:intergenic 35.0%
ACAATTCAGTGCCTTAATGT+GGG - chr1.2:51757585-51757604 MS.gene059001:CDS 35.0%
ACGGGATATGTCAATTAAGA+CGG - chr1.2:51755990-51756009 MS.gene059001:CDS 35.0%
ACTAATACCTAACTGAGGTT+CGG - chr1.2:51757048-51757067 MS.gene059001:CDS 35.0%
AGAGATACTTACGCAAAACA+AGG + chr1.2:51757004-51757023 None:intergenic 35.0%
AGTAGAACAAAGAAGCAAGT+AGG + chr1.2:51754125-51754144 None:intergenic 35.0%
ATATGTCAATTAAGACGGGT+AGG - chr1.2:51755995-51756014 MS.gene059001:CDS 35.0%
CACATTTAATGTCGTGATTC+AGG - chr1.2:51754491-51754510 MS.gene059001:intron 35.0%
CACTTATGAATACAAACCTG+GGG + chr1.2:51754655-51754674 None:intergenic 35.0%
CATTAATAAACAGTGCACAC+TGG - chr1.2:51754615-51754634 MS.gene059001:intron 35.0%
CCTGAATTTCTGTAATCTCA+CGG + chr1.2:51756861-51756880 None:intergenic 35.0%
CGGCTCCATTATTTAATCTT+TGG - chr1.2:51757255-51757274 MS.gene059001:intron 35.0%
GAACGGTTACATTATACGAT+TGG - chr1.2:51753996-51754015 MS.gene059001:CDS 35.0%
GAAGAGTAAACACAATGTCT+GGG - chr1.2:51756214-51756233 MS.gene059001:intron 35.0%
GAATAATTAGTGATGCCGTT+CGG - chr1.2:51757627-51757646 MS.gene059001:CDS 35.0%
GACACTTATGAATACAAACC+TGG + chr1.2:51754657-51754676 None:intergenic 35.0%
GAGATTACAGAAATTCAGGA+AGG - chr1.2:51756862-51756881 MS.gene059001:intron 35.0%
GATATAGAGACTGTAGGTAT+AGG + chr1.2:51755434-51755453 None:intergenic 35.0%
GGTTGTGGAAAATCATGATT+TGG - chr1.2:51755707-51755726 MS.gene059001:CDS 35.0%
GTAAAAATAGACGTAGTACC+AGG - chr1.2:51755170-51755189 MS.gene059001:CDS 35.0%
GTTAGAGAACAATCAGAAAC+CGG - chr1.2:51754835-51754854 MS.gene059001:intron 35.0%
TATCAAGGAACTTTCTCTGA+CGG - chr1.2:51754901-51754920 MS.gene059001:CDS 35.0%
TATGTCAATTAAGACGGGTA+GGG - chr1.2:51755996-51756015 MS.gene059001:CDS 35.0%
TCTAACATTGGATTTGCATC+TGG + chr1.2:51757442-51757461 None:intergenic 35.0%
TCTTCCCTTTAGTGATTGAA+CGG + chr1.2:51756199-51756218 None:intergenic 35.0%
TCTTCTGTAAAATCTCCTCA+AGG - chr1.2:51756369-51756388 MS.gene059001:CDS 35.0%
TGATATCTTCAACAACCTAC+TGG - chr1.2:51756779-51756798 MS.gene059001:CDS 35.0%
TTACTGGGAAATGTTTAAGC+TGG - chr1.2:51757210-51757229 MS.gene059001:intron 35.0%
TTATCAGGAACAACAGTATC+CGG + chr1.2:51755316-51755335 None:intergenic 35.0%
TTCTCACTAATACCTAACTG+AGG - chr1.2:51757043-51757062 MS.gene059001:CDS 35.0%
TTGTACTTGTAGTCTTCAGT+GGG - chr1.2:51757348-51757367 MS.gene059001:intron 35.0%
TTTAATTGTTGTCGCAGCTT+TGG - chr1.2:51755461-51755480 MS.gene059001:CDS 35.0%
TTTAGAGGCTCTTCATCATT+GGG - chr1.2:51756904-51756923 MS.gene059001:intron 35.0%
! ATGATTTTCCACAACCTTCA+AGG + chr1.2:51755703-51755722 None:intergenic 35.0%
! CTTTTTACATTTTACCGTCC+AGG - chr1.2:51756834-51756853 MS.gene059001:CDS 35.0%
! GGTTTTTGCTGAAAAGGTTT+TGG + chr1.2:51756271-51756290 None:intergenic 35.0%
! TCAAGCTAATGCAAAAGCAT+AGG - chr1.2:51754375-51754394 MS.gene059001:intron 35.0%
! TCCTACTTCTTTGTTATCAC+CGG - chr1.2:51755924-51755943 MS.gene059001:CDS 35.0%
!! AGATTTGCTGGTACATTATC+AGG + chr1.2:51755331-51755350 None:intergenic 35.0%
!! GATATTTCTGGAAGATTTGC+TGG + chr1.2:51755343-51755362 None:intergenic 35.0%
!! GTTTGGGTTATTTTGTAGGA+AGG - chr1.2:51756697-51756716 MS.gene059001:intron 35.0%
!! TTTTAGAGGCTCTTCATCAT+TGG - chr1.2:51756903-51756922 MS.gene059001:intron 35.0%
AAACAGTGCACACTGGATAA+TGG - chr1.2:51754622-51754641 MS.gene059001:intron 40.0%
AAAGTCCATTCCTACTTCGT+CGG - chr1.2:51755045-51755064 MS.gene059001:intron 40.0%
AACACCCGTTCAATCACTAA+AGG - chr1.2:51756191-51756210 MS.gene059001:intron 40.0%
AATGGAGTCTTGCAATTCTC+TGG + chr1.2:51755088-51755107 None:intergenic 40.0%
ACACCCGTTCAATCACTAAA+GGG - chr1.2:51756192-51756211 MS.gene059001:intron 40.0%
ACATATCCCGTTCATCTTTG+AGG + chr1.2:51755981-51756000 None:intergenic 40.0%
AGAACAAAGAAGCAAGTAGG+TGG + chr1.2:51754122-51754141 None:intergenic 40.0%
AGTCCTTAGTACTATGCAAC+CGG + chr1.2:51755617-51755636 None:intergenic 40.0%
AGTCTCAAAGAAGATGACTG+GGG - chr1.2:51755126-51755145 MS.gene059001:intron 40.0%
ATATACCATCGACAGTCTCA+AGG + chr1.2:51754576-51754595 None:intergenic 40.0%
ATGGAGTCTTGCAATTCTCT+GGG + chr1.2:51755087-51755106 None:intergenic 40.0%
ATTCAAAACGGAGGAGAAAC+AGG + chr1.2:51757678-51757697 None:intergenic 40.0%
CCGTGAGATTACAGAAATTC+AGG - chr1.2:51756858-51756877 MS.gene059001:intron 40.0%
CGGGATATGTCAATTAAGAC+GGG - chr1.2:51755991-51756010 MS.gene059001:CDS 40.0%
CGGTTACATTATACGATTGG+TGG - chr1.2:51753999-51754018 MS.gene059001:intron 40.0%
CGTATAATGTAACCGTTCGT+TGG + chr1.2:51753994-51754013 None:intergenic 40.0%
CTGGTAATATAAGCATGAGC+CGG + chr1.2:51757423-51757442 None:intergenic 40.0%
CTGTAAAATCTCCTCAAGGA+AGG - chr1.2:51756373-51756392 MS.gene059001:CDS 40.0%
CTTCCCTTTAGTGATTGAAC+GGG + chr1.2:51756198-51756217 None:intergenic 40.0%
GAATGTAAGTCACTCGAACA+AGG - chr1.2:51756395-51756414 MS.gene059001:CDS 40.0%
GGAAGAGTAAACACAATGTC+TGG - chr1.2:51756213-51756232 MS.gene059001:intron 40.0%
GTCAATGTTGTTCATGGTAG+TGG - chr1.2:51756018-51756037 MS.gene059001:CDS 40.0%
GTTGATATTGCTTGTGGTAG+TGG - chr1.2:51755148-51755167 MS.gene059001:intron 40.0%
GTTGTACTTGTAGTCTTCAG+TGG - chr1.2:51757347-51757366 MS.gene059001:intron 40.0%
TATACCATCGACAGTCTCAA+GGG + chr1.2:51754575-51754594 None:intergenic 40.0%
TCCGGTGATAACAAAGAAGT+AGG + chr1.2:51755928-51755947 None:intergenic 40.0%
TCGGGACGATAATTCAAGAT+AGG + chr1.2:51757320-51757339 None:intergenic 40.0%
TCTTTATCTGGATGTGTTGC+AGG + chr1.2:51756114-51756133 None:intergenic 40.0%
TCTTTCTCTGGATTCTTGAG+AGG + chr1.2:51755669-51755688 None:intergenic 40.0%
TGACGAGAATACTCACTTTG+TGG + chr1.2:51754080-51754099 None:intergenic 40.0%
TGACTTACATTCCTTCCTTG+AGG + chr1.2:51756387-51756406 None:intergenic 40.0%
TGAGACTTTGCATTCATCTC+CGG + chr1.2:51755113-51755132 None:intergenic 40.0%
TGATTGCGCCAAAACTCTAA+GGG + chr1.2:51756735-51756754 None:intergenic 40.0%
TGGCTCGTTAAATCATCTCA+AGG - chr1.2:51754019-51754038 MS.gene059001:intron 40.0%
TTATCACCGGATAAGACCAT+GGG - chr1.2:51755937-51755956 MS.gene059001:CDS 40.0%
TTGATTGCGCCAAAACTCTA+AGG + chr1.2:51756736-51756755 None:intergenic 40.0%
! AGATTAAATAATGGAGCCGG+TGG + chr1.2:51757254-51757273 None:intergenic 40.0%
! ATCCGGATCATGATTTTCGA+CGG + chr1.2:51755299-51755318 None:intergenic 40.0%
! GATTAAATAATGGAGCCGGT+GGG + chr1.2:51757253-51757272 None:intergenic 40.0%
! GCACGATTTTACCCACATTA+AGG + chr1.2:51757599-51757618 None:intergenic 40.0%
! GGAGATTTTACAGAAGATGC+AGG + chr1.2:51756366-51756385 None:intergenic 40.0%
! TGCTGACAGTGGATTCAAAA+CGG + chr1.2:51757690-51757709 None:intergenic 40.0%
! TTCTACCTCCCTTAGAGTTT+TGG - chr1.2:51756724-51756743 MS.gene059001:CDS 40.0%
!! AATGTTGTTCATGGTAGTGG+CGG - chr1.2:51756021-51756040 MS.gene059001:CDS 40.0%
!! ATTGGCTTGTCACAAATCTC+CGG - chr1.2:51757547-51757566 MS.gene059001:intron 40.0%
!! TGATTCAGGCAATGCTGTTT+TGG - chr1.2:51754861-51754880 MS.gene059001:intron 40.0%
!! TGGGTTATTTTGTAGGAAGG+TGG - chr1.2:51756700-51756719 MS.gene059001:intron 40.0%
AACGTAGAACTCTAACCCAC+CGG - chr1.2:51757235-51757254 MS.gene059001:intron 45.0%
AATTGCAAGACTCCATTCCC+CGG - chr1.2:51755091-51755110 MS.gene059001:intron 45.0%
AGACTTTGCATTCATCTCCG+GGG + chr1.2:51755111-51755130 None:intergenic 45.0%
AGCATTGCCTGAATCAGTAC+CGG + chr1.2:51754857-51754876 None:intergenic 45.0%
AGGCACTCCTCAAAGATGAA+CGG - chr1.2:51755971-51755990 MS.gene059001:CDS 45.0%
AGTAAACACAATGTCTGGGC+AGG - chr1.2:51756218-51756237 MS.gene059001:intron 45.0%
AGTGAGGTCAACGATGTTCA+TGG - chr1.2:51755567-51755586 MS.gene059001:CDS 45.0%
CAATACCGACGAAGTAGGAA+TGG + chr1.2:51755053-51755072 None:intergenic 45.0%
CTAACTGAGGTTCGGAAGAA+GGG - chr1.2:51757056-51757075 MS.gene059001:CDS 45.0%
CTTATGCGTCTCATACCGAA+CGG + chr1.2:51757645-51757664 None:intergenic 45.0%
GAGACTTTGCATTCATCTCC+GGG + chr1.2:51755112-51755131 None:intergenic 45.0%
GGCGACAATTGAAACAGAAG+CGG - chr1.2:51756314-51756333 MS.gene059001:CDS 45.0%
GGGGTGCAATTAGAAGAACT+GGG + chr1.2:51753947-51753966 None:intergenic 45.0%
GGTAGGGTCAATGTTGTTCA+TGG - chr1.2:51756012-51756031 MS.gene059001:CDS 45.0%
GTCAACGATGTTCATGGTAG+TGG - chr1.2:51755573-51755592 MS.gene059001:CDS 45.0%
GTTATCACCGGATAAGACCA+TGG - chr1.2:51755936-51755955 MS.gene059001:CDS 45.0%
TCCTCCATCAGTCATTTCCA+AGG + chr1.2:51756157-51756176 None:intergenic 45.0%
TCTTCATCTGAACGCTTGAG+AGG + chr1.2:51755256-51755275 None:intergenic 45.0%
TGGAAGCGAGAAGAAGAAGA+AGG + chr1.2:51753974-51753993 None:intergenic 45.0%
TGGAGTCTTGCAATTCTCTG+GGG + chr1.2:51755086-51755105 None:intergenic 45.0%
TGTTTCATTGCTACCCCTGA+TGG - chr1.2:51754720-51754739 MS.gene059001:CDS 45.0%
TTCAAATGTTGTCGCAGCTG+TGG - chr1.2:51755891-51755910 MS.gene059001:CDS 45.0%
TTCTTCTCGCTTCCAACGAA+CGG - chr1.2:51753979-51753998 MS.gene059001:CDS 45.0%
TTGAGAGGATCTCCATATGC+AGG + chr1.2:51755654-51755673 None:intergenic 45.0%
TTTCTGTAATCTCACGGTCC+TGG + chr1.2:51756855-51756874 None:intergenic 45.0%
! AGAAGAAGAAGAAGGTGTGG+GGG + chr1.2:51753966-51753985 None:intergenic 45.0%
! ATGATTTTCGACGGCCTTTG+AGG + chr1.2:51755290-51755309 None:intergenic 45.0%
! CAATGACTCTGGAGAAACTG+TGG + chr1.2:51756439-51756458 None:intergenic 45.0%
! CGAGAAGAAGAAGAAGGTGT+GGG + chr1.2:51753968-51753987 None:intergenic 45.0%
! GAGAAGAAGAAGAAGGTGTG+GGG + chr1.2:51753967-51753986 None:intergenic 45.0%
! GCAGAGATCTGGTCTTTATC+TGG + chr1.2:51756126-51756145 None:intergenic 45.0%
! TGACAGTGGATTCAAAACGG+AGG + chr1.2:51757687-51757706 None:intergenic 45.0%
!! ACTGGGGTTGATATTGCTTG+TGG - chr1.2:51755142-51755161 MS.gene059001:intron 45.0%
!! ATGTTGTTCATGGTAGTGGC+GGG - chr1.2:51756022-51756041 MS.gene059001:CDS 45.0%
!! GGATAATGGTTTTACTCCCC+AGG - chr1.2:51754636-51754655 MS.gene059001:intron 45.0%
!! TAGCATTGGCTGAGAAGTGT+TGG + chr1.2:51756618-51756637 None:intergenic 45.0%
!! TCAGAAACCGGTACTGATTC+AGG - chr1.2:51754847-51754866 MS.gene059001:intron 45.0%
AAACGGAGGAGAAACAGGCT+TGG + chr1.2:51757673-51757692 None:intergenic 50.0%
AACCACCGTTTAGCCATCTC+CGG - chr1.2:51754046-51754065 MS.gene059001:intron 50.0%
AAGCAGCATCCTACATCGAG+AGG - chr1.2:51755229-51755248 MS.gene059001:CDS 50.0%
AGAGCAGAGCTCTACCTTGA+AGG - chr1.2:51755686-51755705 MS.gene059001:CDS 50.0%
AGAGCCAAGCTCTACCTCAA+AGG - chr1.2:51755273-51755292 MS.gene059001:CDS 50.0%
AGCAGGTTGCTTCTTCTGGT+AGG + chr1.2:51756082-51756101 None:intergenic 50.0%
AGTCATTTCCAAGGCTGCTG+AGG + chr1.2:51756148-51756167 None:intergenic 50.0%
ATTCAGGGAAGAAGCGGTTC+GGG - chr1.2:51754507-51754526 MS.gene059001:intron 50.0%
CAGAAGAAGCAACCTGCTAC+TGG - chr1.2:51756084-51756103 MS.gene059001:CDS 50.0%
CAGAAGAAGCAGCCTGCATA+TGG - chr1.2:51755639-51755658 MS.gene059001:CDS 50.0%
CAGTAGCAGGTTGCTTCTTC+TGG + chr1.2:51756086-51756105 None:intergenic 50.0%
CATATGCAGGCTGCTTCTTC+TGG + chr1.2:51755641-51755660 None:intergenic 50.0%
CCTAACTGAGGTTCGGAAGA+AGG - chr1.2:51757055-51757074 MS.gene059001:CDS 50.0%
CCTTCTTCCGAACCTCAGTT+AGG + chr1.2:51757058-51757077 None:intergenic 50.0%
GACCATGGGAGATCGCAATA+AGG - chr1.2:51755951-51755970 MS.gene059001:CDS 50.0%
GAGCTCTACCTTGAAGGTTG+TGG - chr1.2:51755692-51755711 MS.gene059001:CDS 50.0%
GATTCAGGGAAGAAGCGGTT+CGG - chr1.2:51754506-51754525 MS.gene059001:intron 50.0%
GCAGCCTTGGAAATGACTGA+TGG - chr1.2:51756150-51756169 MS.gene059001:intron 50.0%
GCAGGTTGCTTCTTCTGGTA+GGG + chr1.2:51756081-51756100 None:intergenic 50.0%
GCCTTGGAAATGACTGATGG+AGG - chr1.2:51756153-51756172 MS.gene059001:intron 50.0%
GCGAGAAGAAGAAGAAGGTG+TGG + chr1.2:51753969-51753988 None:intergenic 50.0%
GGAAATGACTGATGGAGGAC+TGG - chr1.2:51756158-51756177 MS.gene059001:intron 50.0%
GGCACTCCTCAAAGATGAAC+GGG - chr1.2:51755972-51755991 MS.gene059001:CDS 50.0%
GGCCGTCGAAAATCATGATC+CGG - chr1.2:51755294-51755313 MS.gene059001:CDS 50.0%
GTAGAGCTCTGCTCTTTCTC+TGG + chr1.2:51755681-51755700 None:intergenic 50.0%
GTCGTGATTCAGGGAAGAAG+CGG - chr1.2:51754501-51754520 MS.gene059001:intron 50.0%
GTTTCCCTTGAGACTGTCGA+TGG - chr1.2:51754568-51754587 MS.gene059001:intron 50.0%
TCACTTTGTGGAAGAGACGC+CGG + chr1.2:51754068-51754087 None:intergenic 50.0%
TCAGGCAATACCGACGAAGT+AGG + chr1.2:51755058-51755077 None:intergenic 50.0%
TCTCTCGTGACCAAAGACGT+AGG + chr1.2:51755498-51755517 None:intergenic 50.0%
TGAGGTTCGGAAGAAGGGTA+GGG - chr1.2:51757061-51757080 MS.gene059001:CDS 50.0%
TGGCCGGTTGCATAGTACTA+AGG - chr1.2:51755611-51755630 MS.gene059001:CDS 50.0%
TGTAATCTCACGGTCCTGGA+CGG + chr1.2:51756851-51756870 None:intergenic 50.0%
TTCGTCGGTATTGCCTGAAG+AGG - chr1.2:51755060-51755079 MS.gene059001:intron 50.0%
TTGAGAGGACCTCTCGATGT+AGG + chr1.2:51755241-51755260 None:intergenic 50.0%
TTGCATTCATCTCCGGGGAA+TGG + chr1.2:51755106-51755125 None:intergenic 50.0%
! CTCGATGTAGGATGCTGCTT+CGG + chr1.2:51755229-51755248 None:intergenic 50.0%
! GGGGGTGCAATTAGAAGAAC+TGG + chr1.2:51753948-51753967 None:intergenic 50.0%
! TGCCTTATTGCGATCTCCCA+TGG + chr1.2:51755956-51755975 None:intergenic 50.0%
! TTGCGCCAAAACTCTAAGGG+AGG + chr1.2:51756732-51756751 None:intergenic 50.0%
! TTGTTTTCCTCTCCAAGCGC+CGG + chr1.2:51757569-51757588 None:intergenic 50.0%
!! ACGATGTTCATGGTAGTGGC+CGG - chr1.2:51755577-51755596 MS.gene059001:CDS 50.0%
!! CGATCTCCCATGGTCTTATC+CGG + chr1.2:51755946-51755965 None:intergenic 50.0%
AGACGCCGGAGATGGCTAAA+CGG + chr1.2:51754054-51754073 None:intergenic 55.0%
CTGAGGTTCGGAAGAAGGGT+AGG - chr1.2:51757060-51757079 MS.gene059001:CDS 55.0%
GAGGCTCTTCATCATTGGGC+AGG - chr1.2:51756908-51756927 MS.gene059001:intron 55.0%
GCGGGAATAGACGTAGTGCT+CGG - chr1.2:51756040-51756059 MS.gene059001:CDS 55.0%
GTTGCAGGATCTCCAGTAGC+AGG + chr1.2:51756099-51756118 None:intergenic 55.0%
TGTCACAAATCTCCGGCGCT+TGG - chr1.2:51757554-51757573 MS.gene059001:intron 55.0%
!! ACGGCCTTTGAGGTAGAGCT+TGG + chr1.2:51755280-51755299 None:intergenic 55.0%
!! CAATTCTCTGGGGCCTCTTC+AGG + chr1.2:51755076-51755095 None:intergenic 55.0%
ACCGGCCACTACGTCTAGTC+CGG + chr1.2:51755599-51755618 None:intergenic 60.0%
AGGCTGCTGAGGCAGAGATC+TGG + chr1.2:51756137-51756156 None:intergenic 60.0%
CAAATCTCCGGCGCTTGGAG+AGG - chr1.2:51757559-51757578 MS.gene059001:intron 60.0%
GATCTCTGCCTCAGCAGCCT+TGG - chr1.2:51756137-51756156 MS.gene059001:CDS 60.0%
TGTGGAAGAGACGCCGGAGA+TGG + chr1.2:51754062-51754081 None:intergenic 60.0%
! AGTGGCCGGACTAGACGTAG+TGG - chr1.2:51755591-51755610 MS.gene059001:CDS 60.0%
CGCCGGAGATGGCTAAACGG+TGG + chr1.2:51754051-51754070 None:intergenic 65.0%
! GCCGGACTAGACGTAGTGGC+CGG - chr1.2:51755595-51755614 MS.gene059001:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 51753929 51757715 51753929 ID=MS.gene059001
chr1.2 mRNA 51753929 51757715 51753929 ID=MS.gene059001.t1;Parent=MS.gene059001
chr1.2 exon 51757561 51757715 51757561 ID=MS.gene059001.t1.exon1;Parent=MS.gene059001.t1
chr1.2 CDS 51757561 51757715 51757561 ID=cds.MS.gene059001.t1;Parent=MS.gene059001.t1
chr1.2 exon 51756987 51757131 51756987 ID=MS.gene059001.t1.exon2;Parent=MS.gene059001.t1
chr1.2 CDS 51756987 51757131 51756987 ID=cds.MS.gene059001.t1;Parent=MS.gene059001.t1
chr1.2 exon 51756722 51756869 51756722 ID=MS.gene059001.t1.exon3;Parent=MS.gene059001.t1
chr1.2 CDS 51756722 51756869 51756722 ID=cds.MS.gene059001.t1;Parent=MS.gene059001.t1
chr1.2 exon 51756274 51756606 51756274 ID=MS.gene059001.t1.exon4;Parent=MS.gene059001.t1
chr1.2 CDS 51756274 51756606 51756274 ID=cds.MS.gene059001.t1;Parent=MS.gene059001.t1
chr1.2 exon 51755861 51756166 51755861 ID=MS.gene059001.t1.exon5;Parent=MS.gene059001.t1
chr1.2 CDS 51755861 51756166 51755861 ID=cds.MS.gene059001.t1;Parent=MS.gene059001.t1
chr1.2 exon 51755164 51755736 51755164 ID=MS.gene059001.t1.exon6;Parent=MS.gene059001.t1
chr1.2 CDS 51755164 51755736 51755164 ID=cds.MS.gene059001.t1;Parent=MS.gene059001.t1
chr1.2 exon 51754871 51754929 51754871 ID=MS.gene059001.t1.exon7;Parent=MS.gene059001.t1
chr1.2 CDS 51754871 51754929 51754871 ID=cds.MS.gene059001.t1;Parent=MS.gene059001.t1
chr1.2 exon 51754715 51754788 51754715 ID=MS.gene059001.t1.exon8;Parent=MS.gene059001.t1
chr1.2 CDS 51754715 51754788 51754715 ID=cds.MS.gene059001.t1;Parent=MS.gene059001.t1
chr1.2 exon 51753929 51754016 51753929 ID=MS.gene059001.t1.exon9;Parent=MS.gene059001.t1
chr1.2 CDS 51753929 51754016 51753929 ID=cds.MS.gene059001.t1;Parent=MS.gene059001.t1
Gene Sequence

>MS.gene059001

ATGGCTGATTTCACTCCCAGTTCTTCTAATTGCACCCCCACACCTTCTTCTTCTTCTCGCTTCCAACGAACGGTTACATTATACGATTGGTGGCTCGTTAAATCATCTCAAGGAAACAACCACCGTTTAGCCATCTCCGGCGTCTCTTCCACAAAGTGAGTATTCTCGTCAAAATTATTATGCTTATGCACCACCTACTTGCTTCTTTGTTCTACTTGAAAATCCAATAATCTTGTTGAATCAGAAATTGGAGTTACTTGAGTTAATCGTATAGGCATTTAACTTGCTTTACTAGAAACAATGTCAGTTGCATTGTCCCAAACCTGACTTTCAATACTTAATACTTTTTGTTAATTTCATCGGTTTTGAATTTATTTTTGGATACATTATTATTTGTATGTGTTAACACTAAACTATAAATTGGCTGAAAACTTTGCATAGATTTTTCAAGCTAATGCAAAAGCATAGGTCACATACTTGTTTTTTACTAAAATAAAATGATCATTTTTGACAAATATAAAAAACAGTTACTGTGGTTCTACTTCTAATGTTTTCATTATTACACATTTAATGTCGTGATTCAGGGAAGAAGCGGTTCGGGTGTTTAATTCTGCTCCTATTATCAAAAGATATGACGAGGTTTCCCTTGAGACTGTCGATGGTATATATGTTTTGATTAGGGGTTTCATTAATAAACAGTGCACACTGGATAATGGTTTTACTCCCCAGGTTTGTATTCATAAGTGTCAATGTTTTTGGTGGTTATTCTTGCAAGATATTGTTGATAATGGTGTTTCATTGCTACCCCTGATGGATTTTTGTTTTTTTCTTCTATTTCATGGTTAGATTTTCAAGAGTTTTTTATTTGGCTTTTCTGAAAACTGGGAAAGCTCTTTTCTAGCGTGCGTTAGAGAACAATCAGAAACCGGTACTGATTCAGGCAATGCTGTTTTGGATAATGAATTTGCATTTTATCAAGGAACTTTCTCTGACGGTAAATATTTCGATAATGGTTGTTAATGATTTGCTGTCATATAGTTGTTGTTTGTTTTGTTAGTTATCTCTTTATTCTCTATATCTCAATGTTGTTTTATTAATTTTTGTAGCAGGTGAGGAAAAGTCCATTCCTACTTCGTCGGTATTGCCTGAAGAGGCCCCAGAGAATTGCAAGACTCCATTCCCCGGAGATGAATGCAAAGTCTCAAAGAAGATGACTGGGGTTGATATTGCTTGTGGTAGTGGTAAAAATAGACGTAGTACCAGGTTGCATAATATTAAAGTCTGTCAGCAAAAGAAGCCGAAGCAGCATCCTACATCGAGAGGTCCTCTCAAGCGTTCAGATGAAGAGCCAAGCTCTACCTCAAAGGCCGTCGAAAATCATGATCCGGATACTGTTGTTCCTGATAATGTACCAGCAAATCTTCCAGAAATATCATTTGATGGTAAATATTTAGACATGTTTATGTTTATTCATGTCTTATTTGTTTAATGTTTTATCATTTCCTATACCTACAGTCTCTATATCTTAGTATTTTAATTGTTGTCGCAGCTTTGGAAAATTCTGTTCCTACGTCTTTGGTCACGAGAGATTGCAATATGTCGTTCCTTGAAGATGAACAAGATATGTCAATTAAGATGAGTGAGGTCAACGATGTTCATGGTAGTGGCCGGACTAGACGTAGTGGCCGGTTGCATAGTACTAAGGACTGCCAGAAGAAGCAGCCTGCATATGGAGATCCTCTCAAGAATCCAGAGAAAGAGCAGAGCTCTACCTTGAAGGTTGTGGAAAATCATGATTTGGATACTGCTGTTCCTGATAATGTATCAACGAATCTTCCAGAAATATTATCTGATGGTAAATATTTAGACATGTTTGTAAATGATTCGTATGTATGTTTATTCATGATTTATTTGCTTAATATTTTATCATTTCCTATACCTACAGTTTCTATATCTTAATATTTCAAATGTTGTCGCAGCTGTGGAGAAGTCTTTTCCTACTTCTTTGTTATCACCGGATAAGACCATGGGAGATCGCAATAAGGCACTCCTCAAAGATGAACGGGATATGTCAATTAAGACGGGTAGGGTCAATGTTGTTCATGGTAGTGGCGGGAATAGACGTAGTGCTCGGATGCATAATGTTAAACCCTACCAGAAGAAGCAACCTGCTACTGGAGATCCTGCAACACATCCAGATAAAGACCAGATCTCTGCCTCAGCAGCCTTGGAAATGACTGATGGAGGACTGGAAAGTCTATCAACACCCGTTCAATCACTAAAGGGAAGAGTAAACACAATGTCTGGGCAGGTCACTAATAAATTGAGTTCCAGAATTTCCAAAACCTTTTCAGCAAAAACCAAAAGATGTTATAAGAAAAAAAGGGCGACAATTGAAACAGAAGCGGTCACACCTAAGAGAAAAATTATTAAACCTGCATCTTCTGTAAAATCTCCTCAAGGAAGGAATGTAAGTCACTCGAACAAGGGAAGTCAACAGAGATTATCCACAGTTTCTCCAGAGTCATTGAGTCTAAAAAAATCCAGATCTGGTAAATTTTCCAATCATTGTTTTTTTTTTTACAAGATTTTCCAATCATTGTTTATTCATGAAGCAACACATCTTATTTCCTAATTGATAATATATACACTCTATTTTCTTTTCATGCACTGTCATTCTTGTTGTCCAACACTTCTCAGCCAATGCTATTGTTAGCATTTTTGTACATGGTAATTTGAAAAGTCGTTTACTTTACTCTATTCTTTATGTTTGGGTTATTTTGTAGGAAGGTGGCTTCTACCTCCCTTAGAGTTTTGGCGCAATCAACAACCTATTTATAACATGGTATGTGATATCTTCAACAACCTACTGGAAGATTTACAATCTACAATCTTTTAACTTGTTCTTTTTACATTTTACCGTCCAGGACCGTGAGATTACAGAAATTCAGGAAGGTTCATCTTTGATATCACCTTTTAGAGGCTCTTCATCATTGGGCAGGTACATATTTCTTTGTTGAGAAACATGTTCTAGTTAAATCTGATTAGAACTTTCACTGCAGAATGACATTTCCTTGTTTTGCGTAAGTATCTCTGCCCAACTAACTTAAAAAATTCTCACTAATACCTAACTGAGGTTCGGAAGAAGGGTAGGGTGAGCCCCAGCTTATTTAGAATGTTTCTTTATGTTATTTTTGAAGGAGATCTCCAGTTCCTTTAGATTTTTTTTTTACTATTTGATCAGCTTTGTTATGGTTATTGCTATTGGTAATAGTAATTGTTTACTGGGAAATGTTTAAGCTGGAGAACGTAGAACTCTAACCCACCGGCTCCATTATTTAATCTTTGGAATAGATGATCTTATAATTTTGGAATGATACTTGGCACACCTATCTTGAATTATCGTCCCGATTTTGCTGTTGTACTTGTAGTCTTCAGTGGGTCAAGAGTTTAACAAGTATAACAAAGTCAAAGTTGTATTTTGAAACATGCCGGCTCATGCTTATATTACCAGATGCAAATCCAATGTTAGAATAGTAATTGTCTTCTATGAATTGAATATCTAATCTTTAAGTGTATGCGAGTTTTGCAATATATGGGTAATTAACTGGCTTCAATATTGGCTTGTCACAAATCTCCGGCGCTTGGAGAGGAAAACAATTCAGTGCCTTAATGTGGGTAAAATCGTGCTTTGCACAGAATAATTAGTGATGCCGTTCGGTATGAGACGCATAAGCTAAACCAAGCCTGTTTCTCCTCCGTTTTGAATCCACTGTCAGCAGATTAG
Protein sequence

>MS.gene059001.t1

MADFTPSSSNCTPTPSSSSRFQRTVTLYDWWLVKSSQGNNHRLAISGVSSTKEEAVRVFNSAPIIKRYDEVSLETVDGIYVLIRGFINKQCTLDNGFTPQIFKSFLFGFSENWESSFLACVREQSETGTDSGNAVLDNEFAFYQGTFSDGEEKSIPTSSVLPEEAPENCKTPFPGDECKVSKKMTGVDIACGSGKNRRSTRLHNIKVCQQKKPKQHPTSRGPLKRSDEEPSSTSKAVENHDPDTVVPDNVPANLPEISFDALENSVPTSLVTRDCNMSFLEDEQDMSIKMSEVNDVHGSGRTRRSGRLHSTKDCQKKQPAYGDPLKNPEKEQSSTLKVVENHDLDTAVPDNVSTNLPEILSDAVEKSFPTSLLSPDKTMGDRNKALLKDERDMSIKTGRVNVVHGSGGNRRSARMHNVKPYQKKQPATGDPATHPDKDQISASAALEMTDGGLESLSTPVQSLKGRVNTMSGQVTNKLSSRISKTFSAKTKRCYKKKRATIETEAVTPKRKIIKPASSVKSPQGRNVSHSNKGSQQRLSTVSPESLSLKKSRSGRWLLPPLEFWRNQQPIYNMDREITEIQEGSSLISPFRGSSSLGRIISDAVRYETHKLNQACFSSVLNPLSAD