Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059075.t1 | XP_024632961.1 | 94.6 | 538 | 21 | 1 | 1 | 530 | 1 | 538 | 4.70E-285 | 989.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059075.t1 | Q9SZL8 | 28.0 | 468 | 314 | 8 | 50 | 515 | 72 | 518 | 9.2e-56 | 219.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059075.t1 | D3YBB9 | 84.2 | 487 | 77 | 0 | 44 | 530 | 76 | 562 | 1.1e-243 | 852.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene059075.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059075.t1 | MTR_0558s0020 | 89.068 | 311 | 19 | 1 | 1 | 311 | 1 | 296 | 0.0 | 578 |
| MS.gene059075.t1 | MTR_1g083640 | 93.706 | 286 | 18 | 0 | 1 | 286 | 1 | 286 | 0.0 | 565 |
| MS.gene059075.t1 | MTR_8g446020 | 77.170 | 311 | 16 | 2 | 1 | 311 | 1 | 256 | 1.91e-166 | 473 |
| MS.gene059075.t1 | MTR_2g014100 | 88.142 | 253 | 21 | 2 | 1 | 252 | 1 | 245 | 2.24e-159 | 455 |
| MS.gene059075.t1 | MTR_6g090505 | 88.608 | 237 | 27 | 0 | 81 | 317 | 1 | 237 | 3.38e-152 | 441 |
| MS.gene059075.t1 | MTR_6g090505 | 63.889 | 108 | 12 | 2 | 406 | 511 | 224 | 306 | 4.69e-33 | 130 |
| MS.gene059075.t1 | MTR_0337s0040 | 73.455 | 275 | 19 | 2 | 1 | 275 | 1 | 221 | 1.73e-134 | 390 |
| MS.gene059075.t1 | MTR_3g008240 | 83.945 | 218 | 20 | 1 | 1 | 218 | 1 | 203 | 1.63e-128 | 374 |
| MS.gene059075.t1 | MTR_4g040430 | 84.404 | 218 | 14 | 2 | 1 | 218 | 1 | 198 | 3.48e-128 | 373 |
| MS.gene059075.t1 | MTR_5g071590 | 86.413 | 184 | 22 | 1 | 1 | 184 | 1 | 181 | 5.91e-114 | 337 |
| MS.gene059075.t1 | MTR_1g055240 | 94.366 | 142 | 8 | 0 | 107 | 248 | 3 | 144 | 1.25e-94 | 286 |
| MS.gene059075.t1 | MTR_0019s0290 | 88.889 | 153 | 14 | 1 | 100 | 249 | 8 | 160 | 7.41e-94 | 284 |
| MS.gene059075.t1 | MTR_1281s0010 | 95.413 | 109 | 5 | 0 | 35 | 143 | 1 | 109 | 1.31e-69 | 219 |
| MS.gene059075.t1 | MTR_6g051425 | 30.539 | 334 | 196 | 7 | 56 | 368 | 22 | 340 | 2.67e-40 | 149 |
| MS.gene059075.t1 | MTR_8g046060 | 79.167 | 96 | 11 | 2 | 1 | 95 | 91 | 178 | 7.48e-38 | 139 |
| MS.gene059075.t1 | MTR_0337s0060 | 68.317 | 101 | 20 | 1 | 463 | 563 | 21 | 109 | 3.66e-36 | 135 |
| MS.gene059075.t1 | MTR_4g008820 | 76.842 | 95 | 7 | 1 | 1 | 95 | 125 | 204 | 1.46e-35 | 142 |
| MS.gene059075.t1 | MTR_1g070355 | 24.919 | 309 | 207 | 7 | 3 | 307 | 24 | 311 | 4.96e-21 | 97.4 |
| MS.gene059075.t1 | MTR_0337s0050 | 80.556 | 36 | 7 | 0 | 275 | 310 | 14 | 49 | 3.92e-14 | 68.2 |
| MS.gene059075.t1 | MTR_0402s0040 | 25.946 | 185 | 118 | 4 | 65 | 249 | 40 | 205 | 7.93e-14 | 74.3 |
| MS.gene059075.t1 | MTR_1g013060 | 29.680 | 219 | 135 | 8 | 56 | 272 | 29 | 230 | 1.81e-13 | 70.5 |
| MS.gene059075.t1 | MTR_4g035820 | 23.019 | 265 | 179 | 5 | 56 | 315 | 80 | 324 | 6.97e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059075.t1 | AT4G38180 | 27.966 | 472 | 309 | 8 | 50 | 515 | 72 | 518 | 8.42e-60 | 212 |
| MS.gene059075.t1 | AT3G06250 | 25.941 | 478 | 284 | 10 | 39 | 514 | 178 | 587 | 3.89e-43 | 165 |
| MS.gene059075.t1 | AT3G06250 | 25.941 | 478 | 284 | 10 | 39 | 514 | 178 | 587 | 3.89e-43 | 165 |
| MS.gene059075.t1 | AT3G06250 | 25.941 | 478 | 284 | 10 | 39 | 514 | 178 | 587 | 3.89e-43 | 165 |
| MS.gene059075.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 2.09e-41 | 160 |
| MS.gene059075.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 2.09e-41 | 160 |
| MS.gene059075.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 2.09e-41 | 160 |
| MS.gene059075.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 2.09e-41 | 160 |
| MS.gene059075.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 2.09e-41 | 160 |
| MS.gene059075.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 1.43e-40 | 156 |
| MS.gene059075.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 3.19e-40 | 156 |
| MS.gene059075.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 3.19e-40 | 156 |
| MS.gene059075.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 3.25e-40 | 156 |
| MS.gene059075.t1 | AT1G10240 | 26.013 | 469 | 300 | 14 | 65 | 513 | 62 | 503 | 3.91e-39 | 152 |
| MS.gene059075.t1 | AT1G10240 | 26.013 | 469 | 300 | 14 | 65 | 513 | 62 | 503 | 3.91e-39 | 152 |
| MS.gene059075.t1 | AT5G18960 | 25.466 | 483 | 287 | 13 | 37 | 514 | 197 | 611 | 8.01e-38 | 149 |
| MS.gene059075.t1 | AT5G18960 | 25.466 | 483 | 287 | 13 | 37 | 514 | 197 | 611 | 8.01e-38 | 149 |
| MS.gene059075.t1 | AT5G28530 | 26.984 | 441 | 278 | 12 | 56 | 478 | 60 | 474 | 1.83e-37 | 147 |
| MS.gene059075.t1 | AT5G28530 | 26.984 | 441 | 278 | 12 | 56 | 478 | 60 | 474 | 2.12e-37 | 147 |
| MS.gene059075.t1 | AT5G28530 | 26.984 | 441 | 278 | 12 | 56 | 478 | 60 | 474 | 2.12e-37 | 147 |
| MS.gene059075.t1 | AT3G22170 | 22.661 | 481 | 331 | 8 | 48 | 523 | 67 | 511 | 7.91e-37 | 146 |
| MS.gene059075.t1 | AT3G22170 | 22.661 | 481 | 331 | 8 | 48 | 523 | 67 | 511 | 7.91e-37 | 146 |
| MS.gene059075.t1 | AT2G27110 | 27.476 | 313 | 217 | 5 | 229 | 538 | 36 | 341 | 2.26e-35 | 141 |
| MS.gene059075.t1 | AT4G38170 | 26.460 | 291 | 203 | 4 | 251 | 538 | 24 | 306 | 2.54e-35 | 140 |
| MS.gene059075.t1 | AT2G27110 | 27.476 | 313 | 217 | 5 | 229 | 538 | 181 | 486 | 2.56e-35 | 142 |
| MS.gene059075.t1 | AT2G27110 | 27.476 | 313 | 217 | 5 | 229 | 538 | 181 | 486 | 2.56e-35 | 142 |
| MS.gene059075.t1 | AT1G80010 | 25.918 | 490 | 314 | 15 | 57 | 530 | 101 | 557 | 2.62e-35 | 141 |
| MS.gene059075.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.17e-32 | 132 |
| MS.gene059075.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 41 | 440 | 3.09e-32 | 132 |
| MS.gene059075.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 3.25e-32 | 132 |
| MS.gene059075.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 3.25e-32 | 132 |
| MS.gene059075.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 4.49e-32 | 132 |
| MS.gene059075.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 4.49e-32 | 132 |
| MS.gene059075.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 8.12e-32 | 131 |
| MS.gene059075.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 8.54e-32 | 131 |
| MS.gene059075.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 8.54e-32 | 131 |
| MS.gene059075.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 8.54e-32 | 131 |
| MS.gene059075.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 9.15e-32 | 131 |
| MS.gene059075.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 9.15e-32 | 131 |
| MS.gene059075.t1 | AT2G32250 | 24.837 | 459 | 273 | 11 | 57 | 511 | 3 | 393 | 1.97e-31 | 130 |
| MS.gene059075.t1 | AT2G32250 | 24.837 | 459 | 273 | 11 | 57 | 511 | 3 | 393 | 1.99e-31 | 130 |
| MS.gene059075.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 235 | 499 | 106 | 369 | 2.28e-30 | 126 |
| MS.gene059075.t1 | AT1G52520 | 23.937 | 447 | 299 | 10 | 57 | 500 | 91 | 499 | 3.12e-30 | 126 |
| MS.gene059075.t1 | AT5G28530 | 23.898 | 431 | 241 | 15 | 56 | 478 | 60 | 411 | 1.98e-18 | 89.4 |
| MS.gene059075.t1 | AT5G28530 | 23.898 | 431 | 241 | 15 | 56 | 478 | 60 | 411 | 2.22e-18 | 89.4 |
Find 0 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCATTAAGTTATTC+TGG | + | 10681:3349-3368 | MS.gene059075:intron | 15.0% |
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | 10681:4054-4073 | MS.gene059075:CDS | 15.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | 10681:3579-3598 | MS.gene059075:intron | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | 10681:2845-2864 | MS.gene059075:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | 10681:3159-3178 | MS.gene059075:intergenic | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | 10681:2846-2865 | MS.gene059075:CDS | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | 10681:2559-2578 | MS.gene059075:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | 10681:4095-4114 | MS.gene059075:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | 10681:4096-4115 | MS.gene059075:CDS | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | + | 10681:4124-4143 | MS.gene059075:CDS | 20.0% |
| !!! | TATTGTATTTTGTTCTGATA+TGG | + | 10681:3744-3763 | MS.gene059075:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | 10681:3642-3661 | MS.gene059075:intron | 20.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | 10681:2642-2661 | MS.gene059075:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | 10681:3280-3299 | MS.gene059075:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | 10681:3306-3325 | MS.gene059075:intergenic | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | 10681:3789-3808 | MS.gene059075:intergenic | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | 10681:3503-3522 | MS.gene059075:intron | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | 10681:3231-3250 | MS.gene059075:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | 10681:4495-4514 | MS.gene059075:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | 10681:4321-4340 | MS.gene059075:CDS | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | + | 10681:3425-3444 | MS.gene059075:intron | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | 10681:4495-4514 | MS.gene059075:intron | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | - | 10681:4542-4561 | MS.gene059075:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | 10681:2593-2612 | MS.gene059075:CDS | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | + | 10681:4555-4574 | MS.gene059075:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | + | 10681:3450-3469 | MS.gene059075:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | + | 10681:3449-3468 | MS.gene059075:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | 10681:3193-3212 | MS.gene059075:CDS | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | 10681:3527-3546 | MS.gene059075:intron | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | + | 10681:4128-4147 | MS.gene059075:CDS | 25.0% |
| AAAACACCTGGAAAACTATT+CGG | - | 10681:3962-3981 | MS.gene059074:intergenic | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | - | 10681:3457-3476 | MS.gene059074:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | 10681:2688-2707 | MS.gene059075:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | 10681:3288-3307 | MS.gene059075:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | - | 10681:4458-4477 | MS.gene059075:intergenic | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | + | 10681:2991-3010 | MS.gene059075:CDS | 30.0% | |
| ATCATGATCTTCAAAACTTG+GGG | - | 10681:4662-4681 | MS.gene059075:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | 10681:2676-2695 | MS.gene059075:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | 10681:4500-4519 | MS.gene059075:intergenic | 30.0% | |
| CTTACTTATTTGAACTACAC+GGG | + | 10681:3426-3445 | MS.gene059075:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | 10681:4498-4517 | MS.gene059075:intron | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | - | 10681:4459-4478 | MS.gene059075:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | 10681:4010-4029 | MS.gene059075:CDS | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | 10681:4663-4682 | MS.gene059075:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | 10681:3284-3303 | MS.gene059075:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | 10681:2580-2599 | MS.gene059075:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | 10681:2713-2732 | MS.gene059075:CDS | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | 10681:3773-3792 | MS.gene059075:intron | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | 10681:2687-2706 | MS.gene059075:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | 10681:2852-2871 | MS.gene059075:CDS | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | - | 10681:3491-3510 | MS.gene059075:intergenic | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | - | 10681:2516-2535 | MS.gene059075:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | - | 10681:4460-4479 | MS.gene059075:intergenic | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | 10681:2918-2937 | MS.gene059075:intergenic | 30.0% | |
| TTCACAATTGATAAGGTTGA+TGG | + | 10681:4562-4581 | MS.gene059075:intron | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | 10681:2517-2536 | MS.gene059075:intergenic | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | 10681:3045-3064 | MS.gene059075:intergenic | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | + | 10681:4589-4608 | MS.gene059075:intron | 30.0% |
| !! | ATCATGATCGATTTGATGAA+AGG | + | 10681:4674-4693 | MS.gene059075:intron | 30.0% |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | 10681:2958-2977 | MS.gene059075:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | 10681:4842-4861 | MS.gene059075:CDS | 30.0% |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | 10681:3312-3331 | MS.gene059075:intron | 30.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | 10681:3903-3922 | MS.gene059075:intergenic | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | 10681:3080-3099 | MS.gene059075:CDS | 35.0% | |
| ACATCAACTTCATCTGATAG+TGG | + | 10681:2388-2407 | MS.gene059075:CDS | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | 10681:4335-4354 | MS.gene059075:CDS | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | 10681:3149-3168 | MS.gene059075:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | 10681:4738-4757 | MS.gene059075:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | 10681:4336-4355 | MS.gene059075:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | 10681:2515-2534 | MS.gene059075:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | 10681:2928-2947 | MS.gene059075:CDS | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | 10681:4664-4683 | MS.gene059075:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | 10681:4461-4480 | MS.gene059075:intron | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | 10681:2777-2796 | MS.gene059075:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | 10681:2771-2790 | MS.gene059075:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | 10681:3077-3096 | MS.gene059075:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | 10681:2990-3009 | MS.gene059075:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | 10681:3148-3167 | MS.gene059075:intergenic | 35.0% | |
| TAAAGAATCGAACAAGTGAG+TGG | - | 10681:4306-4325 | MS.gene059075:intergenic | 35.0% | |
| TAAGACCTATAGTCAATCCT+AGG | - | 10681:3410-3429 | MS.gene059075:intergenic | 35.0% | |
| TCCAAAACATCAACATTCGA+AGG | - | 10681:4616-4635 | MS.gene059075:intergenic | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | + | 10681:2997-3016 | MS.gene059075:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | 10681:2776-2795 | MS.gene059075:CDS | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | - | 10681:2754-2773 | MS.gene059075:intergenic | 35.0% | |
| TTGAAGATCTTGGAGTTCTT+AGG | + | 10681:4781-4800 | MS.gene059075:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | 10681:2810-2829 | MS.gene059075:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | 10681:3965-3984 | MS.gene059075:CDS | 35.0% |
| ! | ATGATGATGCTGATAATGAC+GGG | + | 10681:4590-4609 | MS.gene059075:intron | 35.0% |
| ! | ATTTAGTTTACGCATTGCTG+AGG | + | 10681:3613-3632 | MS.gene059075:intron | 35.0% |
| ! | CATTCTTTGAAGACAATACC+TGG | + | 10681:4820-4839 | MS.gene059075:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | 10681:2889-2908 | MS.gene059075:intergenic | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | 10681:3966-3985 | MS.gene059075:CDS | 35.0% |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | 10681:3953-3972 | MS.gene059075:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | 10681:4265-4284 | MS.gene059075:CDS | 35.0% |
| ! | TTATGCTGAGTTGGACTTTA+AGG | + | 10681:4363-4382 | MS.gene059075:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | 10681:4841-4860 | MS.gene059075:intergenic | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | + | 10681:3806-3825 | MS.gene059075:CDS | 35.0% |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | 10681:3201-3220 | MS.gene059075:CDS | 35.0% |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | 10681:4771-4790 | MS.gene059075:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | 10681:3978-3997 | MS.gene059075:CDS | 35.0% |
| AACTGCCTAGGATTGACTAT+AGG | + | 10681:3402-3421 | MS.gene059075:intron | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | + | 10681:4784-4803 | MS.gene059075:CDS | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | 10681:3913-3932 | MS.gene059075:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | 10681:4512-4531 | MS.gene059075:intron | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | + | 10681:4737-4756 | MS.gene059075:intron | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | 10681:2512-2531 | MS.gene059075:CDS | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | + | 10681:4182-4201 | MS.gene059075:CDS | 40.0% | |
| GAGGGATAATTATGCTGAGT+TGG | + | 10681:4354-4373 | MS.gene059075:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | - | 10681:4180-4199 | MS.gene059075:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | - | 10681:2476-2495 | MS.gene059075:intergenic | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | + | 10681:2996-3015 | MS.gene059075:CDS | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | 10681:4511-4530 | MS.gene059075:intron | 40.0% | |
| TCACACAAGACAAAATGCCT+AGG | - | 10681:3547-3566 | MS.gene059075:intergenic | 40.0% | |
| TCAGCATGAATCATTGCTAG+GGG | - | 10681:2475-2494 | MS.gene059075:intergenic | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | - | 10681:3914-3933 | MS.gene059075:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | - | 10681:2477-2496 | MS.gene059075:intergenic | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | 10681:4739-4758 | MS.gene059075:intron | 40.0% | |
| ! | AGGGGTGTACTTGTTTACAA+CGG | - | 10681:4440-4459 | MS.gene059075:intergenic | 40.0% |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | + | 10681:3473-3492 | MS.gene059075:intron | 40.0% |
| ! | GCACAGAGAATCTTCCTTTT+CGG | + | 10681:3028-3047 | MS.gene059075:CDS | 40.0% |
| ! | GCCTTCGAATGTTGATGTTT+TGG | + | 10681:4612-4631 | MS.gene059075:intron | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | 10681:4217-4236 | MS.gene059075:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | 10681:4195-4214 | MS.gene059075:CDS | 40.0% |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | 10681:3849-3868 | MS.gene059075:CDS | 40.0% |
| AACACAATAACGCACTAGCC+TGG | - | 10681:3934-3953 | MS.gene059075:intergenic | 45.0% | |
| AATCGAACAAGTGAGTGGTC+TGG | - | 10681:4301-4320 | MS.gene059075:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | 10681:3974-3993 | MS.gene059075:intergenic | 45.0% | |
| CAGTACATTCTGAACTGCCT+AGG | + | 10681:3390-3409 | MS.gene059075:intron | 45.0% | |
| CTAAGGTAACACGAATGCTC+TGG | - | 10681:2901-2920 | MS.gene059075:intergenic | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | 10681:2781-2800 | MS.gene059075:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | 10681:2790-2809 | MS.gene059075:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | 10681:3084-3103 | MS.gene059075:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | - | 10681:2727-2746 | MS.gene059075:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | 10681:2793-2812 | MS.gene059075:CDS | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | 10681:4194-4213 | MS.gene059075:CDS | 45.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | 10681:2433-2452 | MS.gene059075:CDS | 45.0% |
| ATCCCAACAGTCAGCTGATG+CGG | + | 10681:4413-4432 | MS.gene059075:CDS | 50.0% | |
| GAAGGCCTACCTCAGACTTT+AGG | + | 10681:4146-4165 | MS.gene059075:CDS | 50.0% | |
| GAAGTTATGGGTCAGGGAGT+TGG | + | 10681:3003-3022 | MS.gene059075:CDS | 50.0% | |
| GACAAGCCACCTAAAGTCTG+AGG | - | 10681:4158-4177 | MS.gene059075:intergenic | 50.0% | |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | - | 10681:2739-2758 | MS.gene059075:intergenic | 50.0% |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | - | 10681:4154-4173 | MS.gene059075:intergenic | 50.0% |
| GACCGCATCAGCTGACTGTT+GGG | - | 10681:4418-4437 | MS.gene059075:intergenic | 55.0% | |
| GCCAACAACAGACAGTCCAC+AGG | + | 10681:2735-2754 | MS.gene059075:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | + | 10681:4149-4168 | MS.gene059075:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+AGG | + | 10681:3006-3025 | MS.gene059075:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | - | 10681:4419-4438 | MS.gene059075:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10681 | gene | 2379 | 4869 | 2379 | ID=MS.gene059075 |
| 10681 | mRNA | 2379 | 4869 | 2379 | ID=MS.gene059075.t1;Parent=MS.gene059075 |
| 10681 | exon | 2379 | 3309 | 2379 | ID=MS.gene059075.t1.exon1;Parent=MS.gene059075.t1 |
| 10681 | CDS | 2379 | 3309 | 2379 | ID=cds.MS.gene059075.t1;Parent=MS.gene059075.t1 |
| 10681 | exon | 3783 | 4441 | 3783 | ID=MS.gene059075.t1.exon2;Parent=MS.gene059075.t1 |
| 10681 | CDS | 3783 | 4441 | 3783 | ID=cds.MS.gene059075.t1;Parent=MS.gene059075.t1 |
| 10681 | exon | 4759 | 4869 | 4759 | ID=MS.gene059075.t1.exon3;Parent=MS.gene059075.t1 |
| 10681 | CDS | 4759 | 4869 | 4759 | ID=cds.MS.gene059075.t1;Parent=MS.gene059075.t1 |
| Gene Sequence |
| Protein sequence |
