AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059114

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059114.t1 MTR_1g008290 62.857 140 43 2 94 227 8 144 5.39e-56 186
MS.gene059114.t1 MTR_5g032260 56.075 107 41 1 68 168 299 405 8.59e-30 122
MS.gene059114.t1 MTR_4g035820 26.700 397 256 10 2 368 33 424 1.05e-26 115
MS.gene059114.t1 MTR_1g070355 27.016 248 154 8 14 242 47 286 5.10e-19 91.3
MS.gene059114.t1 MTR_5g076070 25.292 257 156 10 25 258 33 276 4.86e-18 85.1
MS.gene059114.t1 MTR_6g051425 22.881 236 152 5 43 258 19 244 1.17e-16 82.0
MS.gene059114.t1 MTR_2g098880 32.231 121 76 1 40 154 60 180 1.31e-16 80.5
MS.gene059114.t1 MTR_2g098880 32.231 121 76 1 40 154 72 192 1.40e-16 80.5
MS.gene059114.t1 MTR_7g446520 26.613 248 151 6 13 245 56 287 2.48e-16 80.9
MS.gene059114.t1 MTR_1g013060 29.327 208 130 6 40 231 23 229 1.28e-14 73.9
MS.gene059114.t1 MTR_0402s0040 27.624 181 116 4 41 208 26 204 2.59e-14 76.3
MS.gene059114.t1 MTR_4g067290 33.333 108 67 2 33 136 48 154 3.83e-12 67.0
MS.gene059114.t1 MTR_4g067290 33.333 108 67 2 33 136 68 174 4.06e-12 67.0
MS.gene059114.t1 MTR_4g067290 33.333 108 67 2 33 136 48 154 4.21e-12 66.6
MS.gene059114.t1 MTR_4g067290 33.333 108 67 2 33 136 66 172 4.30e-12 67.0
MS.gene059114.t1 MTR_4g067290 33.333 108 67 2 33 136 68 174 4.80e-12 67.0
MS.gene059114.t1 MTR_8g465780 34.951 103 66 1 264 365 1 103 5.79e-12 65.1
MS.gene059114.t1 MTR_4g067290 33.333 108 67 2 33 136 108 214 7.90e-12 67.0
MS.gene059114.t1 MTR_7g446510 29.231 130 85 1 123 245 166 295 1.75e-11 66.2
MS.gene059114.t1 MTR_7g446480 29.921 127 82 1 123 242 151 277 3.07e-11 65.5
MS.gene059114.t1 MTR_3g006370 31.132 106 68 1 36 136 45 150 7.04e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059114.t1 AT4G15090 42.033 364 171 8 211 555 360 702 5.43e-84 280
MS.gene059114.t1 AT4G15090 41.825 263 129 5 3 245 8 266 4.62e-54 197
MS.gene059114.t1 AT4G15090 42.033 364 171 8 211 555 360 702 5.43e-84 280
MS.gene059114.t1 AT4G15090 41.825 263 129 5 3 245 8 266 4.62e-54 197
MS.gene059114.t1 AT4G15090 42.033 364 171 8 211 555 360 702 5.43e-84 280
MS.gene059114.t1 AT4G15090 41.825 263 129 5 3 245 8 266 4.62e-54 197
MS.gene059114.t1 AT4G15090 42.033 364 171 8 211 555 360 702 5.43e-84 280
MS.gene059114.t1 AT4G15090 41.825 263 129 5 3 245 8 266 4.62e-54 197
MS.gene059114.t1 AT4G15090 42.033 364 171 8 211 555 360 702 5.43e-84 280
MS.gene059114.t1 AT4G15090 41.825 263 129 5 3 245 8 266 4.62e-54 197
MS.gene059114.t1 AT3G22170 45.161 279 135 2 241 511 409 677 5.12e-80 269
MS.gene059114.t1 AT3G22170 38.911 257 116 4 14 245 35 275 1.48e-48 182
MS.gene059114.t1 AT3G22170 45.161 279 135 2 241 511 409 677 5.12e-80 269
MS.gene059114.t1 AT3G22170 38.911 257 116 4 14 245 35 275 1.48e-48 182
MS.gene059114.t1 AT1G76320 44.981 269 145 2 245 513 341 606 3.28e-75 253
MS.gene059114.t1 AT1G76320 42.081 221 111 4 45 258 1 211 4.11e-46 173
MS.gene059114.t1 AT1G76320 44.981 269 145 2 245 513 341 606 6.07e-75 253
MS.gene059114.t1 AT1G76320 42.081 221 111 4 45 258 1 211 6.17e-46 173
MS.gene059114.t1 AT1G76320 44.981 269 145 2 245 513 341 606 6.56e-75 253
MS.gene059114.t1 AT1G76320 42.081 221 111 4 45 258 1 211 7.11e-46 173
MS.gene059114.t1 AT1G76320 44.981 269 145 2 245 513 341 606 6.56e-75 253
MS.gene059114.t1 AT1G76320 42.081 221 111 4 45 258 1 211 7.11e-46 173
MS.gene059114.t1 AT4G19990 43.494 269 144 4 241 504 291 556 8.00e-60 211
MS.gene059114.t1 AT4G19990 30.159 189 78 5 78 245 1 156 9.61e-16 81.3
MS.gene059114.t1 AT4G19990 43.494 269 144 4 241 504 348 613 1.49e-59 212
MS.gene059114.t1 AT4G19990 34.211 228 96 5 40 246 20 214 4.63e-28 120
MS.gene059114.t1 AT4G19990 43.494 269 144 4 241 504 348 613 1.49e-59 212
MS.gene059114.t1 AT4G19990 34.211 228 96 5 40 246 20 214 4.63e-28 120
MS.gene059114.t1 AT4G19990 43.494 269 144 4 241 504 348 613 1.62e-59 212
MS.gene059114.t1 AT4G19990 34.211 228 96 5 40 246 20 214 4.92e-28 120
MS.gene059114.t1 AT4G19990 43.494 269 144 4 241 504 348 613 1.70e-59 212
MS.gene059114.t1 AT4G19990 34.211 228 96 5 40 246 20 214 4.60e-28 120
MS.gene059114.t1 AT4G19990 43.494 269 144 4 241 504 348 613 1.70e-59 212
MS.gene059114.t1 AT4G19990 34.211 228 96 5 40 246 20 214 4.60e-28 120
MS.gene059114.t1 AT4G19990 43.494 269 144 4 241 504 362 627 2.49e-59 211
MS.gene059114.t1 AT4G19990 31.461 267 120 7 1 246 4 228 4.08e-28 120
MS.gene059114.t1 AT2G32250 36.709 316 181 5 208 517 276 578 4.72e-55 199
MS.gene059114.t1 AT2G32250 43.350 203 79 5 45 245 1 169 6.15e-33 135
MS.gene059114.t1 AT2G32250 36.709 316 181 5 208 517 276 578 5.59e-55 199
MS.gene059114.t1 AT2G32250 43.350 203 79 5 45 245 1 169 6.07e-33 135
MS.gene059114.t1 AT2G32250 36.709 316 181 5 208 517 317 619 6.33e-55 199
MS.gene059114.t1 AT2G32250 43.627 204 79 5 44 245 41 210 1.12e-33 137
MS.gene059114.t1 AT2G32250 36.709 316 181 5 208 517 317 619 6.33e-55 199
MS.gene059114.t1 AT2G32250 43.627 204 79 5 44 245 41 210 1.12e-33 137
MS.gene059114.t1 AT2G32250 36.709 316 181 5 208 517 317 619 6.64e-55 199
MS.gene059114.t1 AT2G32250 43.627 204 79 5 44 245 41 210 9.99e-34 137
MS.gene059114.t1 AT2G32250 36.709 316 181 5 208 517 317 619 6.64e-55 199
MS.gene059114.t1 AT2G32250 43.627 204 79 5 44 245 41 210 9.99e-34 137
MS.gene059114.t1 AT2G32250 36.709 316 181 5 208 517 317 619 6.64e-55 199
MS.gene059114.t1 AT2G32250 43.627 204 79 5 44 245 41 210 9.99e-34 137
MS.gene059114.t1 AT2G32250 36.709 316 181 5 208 517 317 619 6.85e-55 199
MS.gene059114.t1 AT2G32250 43.627 204 79 5 44 245 41 210 7.83e-34 137
MS.gene059114.t1 AT4G38180 35.018 277 170 4 246 517 429 700 3.19e-51 189
MS.gene059114.t1 AT4G38180 33.476 233 135 4 40 258 72 298 1.08e-30 128
MS.gene059114.t1 AT2G27110 35.870 276 165 4 243 512 228 497 5.18e-51 187
MS.gene059114.t1 AT2G27110 36.264 273 162 4 246 512 376 642 1.61e-50 187
MS.gene059114.t1 AT2G27110 27.650 217 125 6 37 245 45 237 2.29e-17 86.7
MS.gene059114.t1 AT2G27110 36.264 273 162 4 246 512 376 642 1.61e-50 187
MS.gene059114.t1 AT2G27110 27.650 217 125 6 37 245 45 237 2.29e-17 86.7
MS.gene059114.t1 AT1G52520 34.043 282 175 4 240 510 419 700 1.66e-47 177
MS.gene059114.t1 AT1G52520 29.528 254 166 4 2 245 38 288 3.77e-24 107
MS.gene059114.t1 AT4G38170 35.581 267 163 5 246 506 194 457 2.90e-47 174
MS.gene059114.t1 AT1G80010 32.342 269 170 5 246 506 450 714 8.79e-37 146
MS.gene059114.t1 AT1G80010 32.051 234 135 6 41 258 95 320 8.34e-24 106
MS.gene059114.t1 AT3G06250 31.752 274 168 4 240 504 496 759 1.62e-33 136
MS.gene059114.t1 AT3G06250 27.347 245 133 6 18 246 152 367 4.51e-18 88.6
MS.gene059114.t1 AT3G06250 31.752 274 168 4 240 504 496 759 1.62e-33 136
MS.gene059114.t1 AT3G06250 27.347 245 133 6 18 246 152 367 4.51e-18 88.6
MS.gene059114.t1 AT3G06250 31.752 274 168 4 240 504 496 759 1.62e-33 136
MS.gene059114.t1 AT3G06250 27.347 245 133 6 18 246 152 367 4.51e-18 88.6
MS.gene059114.t1 AT5G18960 31.111 270 175 4 240 504 520 783 4.45e-33 135
MS.gene059114.t1 AT5G18960 27.511 229 133 6 22 246 192 391 1.73e-16 83.6
MS.gene059114.t1 AT5G18960 31.111 270 175 4 240 504 520 783 4.45e-33 135
MS.gene059114.t1 AT5G18960 27.511 229 133 6 22 246 192 391 1.73e-16 83.6
MS.gene059114.t1 AT1G10240 26.733 202 144 1 246 447 407 604 1.22e-20 96.7
MS.gene059114.t1 AT1G10240 25.197 254 160 9 24 258 34 276 4.08e-15 79.3
MS.gene059114.t1 AT1G10240 26.733 202 144 1 246 447 407 604 1.22e-20 96.7
MS.gene059114.t1 AT1G10240 25.197 254 160 9 24 258 34 276 4.08e-15 79.3
MS.gene059114.t1 AT5G28530 28.019 207 142 4 243 448 356 556 6.39e-14 75.5
MS.gene059114.t1 AT5G28530 28.019 207 142 4 243 448 419 619 8.38e-14 75.1
MS.gene059114.t1 AT5G28530 23.162 272 166 12 41 282 55 313 7.76e-11 65.5
MS.gene059114.t1 AT5G28530 26.570 207 141 4 243 448 356 552 4.63e-13 72.4
MS.gene059114.t1 AT5G28530 27.053 207 140 4 243 448 419 615 6.15e-13 72.4
MS.gene059114.t1 AT5G28530 23.162 272 166 12 41 282 55 313 7.53e-11 65.5
MS.gene059114.t1 AT5G28530 27.053 207 140 4 243 448 419 615 6.15e-13 72.4
MS.gene059114.t1 AT5G28530 23.162 272 166 12 41 282 55 313 7.53e-11 65.5
MS.gene059114.t1 AT3G07500 34.722 144 86 4 12 148 1 143 2.56e-12 67.0
MS.gene059114.t1 AT3G59470 30.233 129 86 2 13 137 41 169 3.41e-12 67.4
MS.gene059114.t1 AT3G59470 30.233 129 86 2 13 137 41 169 3.41e-12 67.4
MS.gene059114.t1 AT3G59470 30.233 129 86 2 13 137 53 181 4.68e-12 67.0
MS.gene059114.t1 AT4G12850 33.036 112 71 2 30 140 3 111 4.11e-11 61.6
MS.gene059114.t1 AT2G43280 30.392 102 66 1 40 136 21 122 5.66e-11 62.8
MS.gene059114.t1 AT4G12850 33.333 102 67 1 40 140 10 111 5.82e-11 62.4

Find 91 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCACTCTTTATTCTTCT+TGG 0.122394 1.2:+11159978 None:intergenic
AAAGAATTTGTGATGGAAAA+TGG 0.198140 1.2:-11161660 MS.gene059114:CDS
AAAATATAAAGTTGCTTTAC+AGG 0.207491 1.2:-11160663 MS.gene059114:CDS
AACGCCGATCTTTATCTAAA+TGG 0.218779 1.2:+11161443 None:intergenic
GAAATTTCAAGTTGAAGTTT+TGG 0.239158 1.2:-11160522 MS.gene059114:CDS
AACAACAATTTGAAGATAAA+TGG 0.257844 1.2:-11160883 MS.gene059114:intron
TTCATATCCTCCATATTCTT+TGG 0.259642 1.2:+11161498 None:intergenic
TATGCTAAGTCAGTTGGATT+TGG 0.280799 1.2:-11161835 MS.gene059114:CDS
TCAAATTCCATTCCAATGTT+AGG 0.289388 1.2:+11161892 None:intergenic
TTCATGTACCGTTGATTTAG+AGG 0.293148 1.2:-11161932 MS.gene059114:CDS
CGGCGTTTGGCTTTAGAATC+AGG 0.298007 1.2:-11161427 MS.gene059114:CDS
GCCACAATGGCCAAAGAATA+TGG 0.298617 1.2:-11161508 MS.gene059114:CDS
GAGCTTTATTGATTCCTCTA+TGG 0.299611 1.2:+11161587 None:intergenic
ATGTAAGAAAACTACATTAA+AGG 0.307863 1.2:-11160696 MS.gene059114:CDS
TTGATCTATTTGGAGATGAT+TGG 0.321918 1.2:-11160841 MS.gene059114:CDS
ATAATGTGTCATACCATTCT+TGG 0.328571 1.2:+11159747 None:intergenic
ATGCTAAGTCAGTTGGATTT+GGG 0.354359 1.2:-11161834 MS.gene059114:CDS
AGGTATTTACTGCTTCTCTT+TGG 0.367389 1.2:+11159805 None:intergenic
AATGTATCATTCATGTAAAC+AGG 0.389787 1.2:+11160782 None:intergenic
GGCACAAGCAACCTGTTCTT+AGG 0.392197 1.2:-11160601 MS.gene059114:CDS
AGAAGATGTGTGTTCTAGTA+AGG 0.397808 1.2:-11160219 MS.gene059114:CDS
GCTATTGAATTTCTCGAAGA+AGG 0.413131 1.2:-11160170 MS.gene059114:CDS
CCTAAAAGAGCAAATACAAA+AGG 0.426549 1.2:-11160005 MS.gene059114:CDS
AATGGAGAACATTCTATTGA+TGG 0.437522 1.2:-11161994 MS.gene059114:CDS
ATGCTTGCTTCTAACATCCT+TGG 0.437672 1.2:+11160262 None:intergenic
ATTGACATTTGCTTCTCAAA+AGG 0.437914 1.2:+11160569 None:intergenic
TTTAGATAAAGATCGGCGTT+TGG 0.438381 1.2:-11161440 MS.gene059114:CDS
ATATGATTCTTTATATCAAA+AGG 0.443423 1.2:-11160192 MS.gene059114:CDS
TCTTTGTAGACATTCATTGA+TGG 0.446762 1.2:-11160342 MS.gene059114:CDS
ATATGATGAACGTGAACATT+GGG 0.447625 1.2:-11160807 MS.gene059114:CDS
GAATTAATGGAAGTTGTTGA+TGG 0.448629 1.2:-11162018 None:intergenic
ATATGAAAACATTGGTTGCT+TGG 0.449564 1.2:-11161482 MS.gene059114:CDS
GAAAATAATGTGCATTGGAA+TGG 0.458553 1.2:+11161614 None:intergenic
TTCACCGTTGAGAACATTTG+AGG 0.466588 1.2:+11159785 None:intergenic
TCCATATTCTTTGGCCATTG+TGG 0.472191 1.2:+11161507 None:intergenic
AGGAAAGTCATCAGGGTTGA+AGG 0.473626 1.2:-11159647 None:intergenic
GAACATTCTATTGATGGGAA+TGG 0.475258 1.2:-11161988 MS.gene059114:CDS
TGAAGATAAATGGCATGAAA+TGG 0.480495 1.2:-11160873 MS.gene059114:intron
TCAATTGCATAAAAGAATCC+TGG 0.481905 1.2:+11161355 None:intergenic
AACAGCTGCATTGCCAAGAA+TGG 0.484562 1.2:-11159760 MS.gene059114:intron
TTCTTAAAATATAGTGTGAT+GGG 0.486629 1.2:+11160291 None:intergenic
AAAGTCGAAAATTGTAAAAG+TGG 0.487862 1.2:+11160451 None:intergenic
GGTGATGGAGTCCTAAGAAC+AGG 0.491171 1.2:+11160590 None:intergenic
CTAAAAGAGCAAATACAAAA+GGG 0.494734 1.2:-11160004 MS.gene059114:CDS
CGTGTTAAAAGAATTTGTGA+TGG 0.498075 1.2:-11161667 MS.gene059114:CDS
ACTCATTATGCTAAGTCAGT+TGG 0.500199 1.2:-11161841 MS.gene059114:CDS
AGGAGATGCAAATGCAATGT+TGG 0.501317 1.2:-11161407 MS.gene059114:CDS
ATGGAAGTTGTTGATGGGAA+TGG 0.507690 1.2:-11162012 MS.gene059114:CDS
GCAAGGAAAATAATGTGCAT+TGG 0.508445 1.2:+11161609 None:intergenic
AGTTATGCTTGCACAAGATA+CGG 0.514711 1.2:-11161757 MS.gene059114:CDS
TATATGATGAACGTGAACAT+TGG 0.515514 1.2:-11160808 MS.gene059114:CDS
TCAAAGTTTCTTCAAGTGCA+TGG 0.515683 1.2:+11160114 None:intergenic
AAATCCACGTCCTTGTTTGA+AGG 0.523815 1.2:-11161710 MS.gene059114:CDS
TTGATGGCATTCCAAGCTGT+TGG 0.525056 1.2:-11160326 MS.gene059114:CDS
CTTCTTAAAATATAGTGTGA+TGG 0.527660 1.2:+11160290 None:intergenic
ATTGAAACTTTGCACCATGT+TGG 0.528985 1.2:-11161553 MS.gene059114:CDS
ATTTGCTTCTCAAAAGGTGA+TGG 0.540522 1.2:+11160575 None:intergenic
TCCACGTCCTTGTTTGAAGG+TGG 0.544839 1.2:-11161707 MS.gene059114:CDS
AATTAATGGAAGTTGTTGAT+GGG 0.547188 1.2:-11162017 None:intergenic
GAAACCATTTAGATAAAGAT+CGG 0.550718 1.2:-11161447 MS.gene059114:CDS
TTATTGATTCCTCTATGGCA+AGG 0.554774 1.2:+11161592 None:intergenic
ATGGAGAACATTCTATTGAT+GGG 0.556834 1.2:-11161993 MS.gene059114:CDS
TATGGAGGATATGAAAACAT+TGG 0.557417 1.2:-11161490 MS.gene059114:CDS
CAACACAGACACCAACAGCT+TGG 0.558938 1.2:+11160315 None:intergenic
CCACGTCCTTGTTTGAAGGT+GGG 0.564321 1.2:-11161706 MS.gene059114:CDS
AGGATAGAGAAGAGGCGGAA+AGG 0.566665 1.2:-11160643 MS.gene059114:CDS
TCAAGAACCTAACATTGGAA+TGG 0.572602 1.2:-11161899 MS.gene059114:CDS
AGAGTGTGATGTCTCGAAGA+AGG 0.573703 1.2:-11160405 MS.gene059114:CDS
TGCTTTACAGGATAGAGAAG+AGG 0.576377 1.2:-11160651 MS.gene059114:CDS
TGCTTGTTCTCACTCCAACA+TGG 0.579133 1.2:+11161539 None:intergenic
TGCAATTGATATGGATGATG+AGG 0.581691 1.2:-11161341 MS.gene059114:CDS
TTGTTTGAAGGTGGGATGTG+AGG 0.585943 1.2:-11161698 MS.gene059114:CDS
AGATAAATGGCATGAAATGG+TGG 0.588682 1.2:-11160870 MS.gene059114:CDS
CCCACCTTCAAACAAGGACG+TGG 0.589716 1.2:+11161706 None:intergenic
TCACATCCCACCTTCAAACA+AGG 0.596792 1.2:+11161700 None:intergenic
ATAAAGAGTGGGATCGAGAG+AGG 0.602973 1.2:-11159969 MS.gene059114:CDS
GGTGGTCAAGAACCTAACAT+TGG 0.606305 1.2:-11161904 MS.gene059114:CDS
GAATGGAGAGCAAGTTGTCA+AGG 0.614810 1.2:-11161971 MS.gene059114:CDS
ACCGTTAGCCTCTAAATCAA+CGG 0.614838 1.2:+11161924 None:intergenic
TTAGAAGCAAGCATCATACA+AGG 0.616240 1.2:-11160253 MS.gene059114:CDS
AAAATCGACAAGGAAAACGT+TGG 0.622612 1.2:-11160062 MS.gene059114:CDS
TAAAAGAGCAAATACAAAAG+GGG 0.623948 1.2:-11160003 MS.gene059114:CDS
ACCGTTGATTTAGAGGCTAA+CGG 0.628314 1.2:-11161925 MS.gene059114:CDS
CCAGTCTTTGAAAATCGACA+AGG 0.632379 1.2:-11160072 MS.gene059114:CDS
CTCCAAGAAGAATAAAGAGT+GGG 0.644223 1.2:-11159980 MS.gene059114:CDS
AATACCTCAAATGTTCTCAA+CGG 0.644793 1.2:-11159789 MS.gene059114:CDS
TTTACAGGATAGAGAAGAGG+CGG 0.651231 1.2:-11160648 MS.gene059114:CDS
GCAATTGATATGGATGATGA+GGG 0.673224 1.2:-11161340 MS.gene059114:CDS
GCTCCAAGAAGAATAAAGAG+TGG 0.689620 1.2:-11159981 MS.gene059114:CDS
ACAATGGCCAAAGAATATGG+AGG 0.745699 1.2:-11161505 MS.gene059114:CDS
GTTGATTTAGAGGCTAACGG+TGG 0.762259 1.2:-11161922 MS.gene059114:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGATTCTTTATATCAAA+AGG - chr1.2:11161470-11161489 MS.gene059114:CDS 15.0%
!! AACAACAATTTGAAGATAAA+TGG - chr1.2:11160779-11160798 MS.gene059114:CDS 20.0%
!! ATCTAGTTGTAAAGTAAAAA+AGG - chr1.2:11161728-11161747 MS.gene059114:CDS 20.0%
!! ATGTAAGAAAACTACATTAA+AGG - chr1.2:11160966-11160985 MS.gene059114:intron 20.0%
!! TTCTTAAAATATAGTGTGAT+GGG + chr1.2:11161374-11161393 None:intergenic 20.0%
!!! AAAATATAAAGTTGCTTTAC+AGG - chr1.2:11160999-11161018 MS.gene059114:intron 20.0%
!!! AAATTTCAAGTTGAAGTTTT+GGG - chr1.2:11161141-11161160 MS.gene059114:intron 20.0%
!!! ATTCTTTTATGCAATTGATA+TGG - chr1.2:11160312-11160331 MS.gene059114:CDS 20.0%
!!! TACATGAATGATACATTTTT+TGG - chr1.2:11160886-11160905 MS.gene059114:intron 20.0%
!!! TTTTGTTTTCTTATTTTCAC+AGG - chr1.2:11161995-11162014 MS.gene059114:CDS 20.0%
! AAAGTCGAAAATTGTAAAAG+TGG + chr1.2:11161214-11161233 None:intergenic 25.0%
! AATGTATCATTCATGTAAAC+AGG + chr1.2:11160883-11160902 None:intergenic 25.0%
! CTAAAAGAGCAAATACAAAA+GGG - chr1.2:11161658-11161677 MS.gene059114:CDS 25.0%
! CTTCTTAAAATATAGTGTGA+TGG + chr1.2:11161375-11161394 None:intergenic 25.0%
! GAAACCATTTAGATAAAGAT+CGG - chr1.2:11160215-11160234 MS.gene059114:CDS 25.0%
! GTGGAAAAATTTGATCTATT+TGG - chr1.2:11160811-11160830 MS.gene059114:CDS 25.0%
! TAAAAGAGCAAATACAAAAG+GGG - chr1.2:11161659-11161678 MS.gene059114:CDS 25.0%
! TAAACAATCACTTTCAATCA+AGG - chr1.2:11160476-11160495 MS.gene059114:CDS 25.0%
! TGATTGTTTACACCAATAAA+AGG + chr1.2:11160466-11160485 None:intergenic 25.0%
!! AAAGAATTTGTGATGGAAAA+TGG - chr1.2:11160002-11160021 MS.gene059114:CDS 25.0%
!! TCGCATGAAAAATGTATTTT+GGG - chr1.2:11160345-11160364 MS.gene059114:CDS 25.0%
!!! AAGTTTTGAGAGTTACAATT+TGG - chr1.2:11161521-11161540 MS.gene059114:CDS 25.0%
!!! ATGAATGATACATTTTTTGG+TGG - chr1.2:11160889-11160908 MS.gene059114:intron 25.0%
!!! CACACTATATTTTAAGAAGA+TGG - chr1.2:11161376-11161395 MS.gene059114:CDS 25.0%
!!! GAAATTTCAAGTTGAAGTTT+TGG - chr1.2:11161140-11161159 MS.gene059114:intron 25.0%
!!! TCATATGGTTGATGAAAATA+TGG - chr1.2:11160542-11160561 MS.gene059114:CDS 25.0%
AAAATATGGCTTAGAGCAAT+GGG - chr1.2:11160556-11160575 MS.gene059114:CDS 30.0%
AATACCTCAAATGTTCTCAA+CGG - chr1.2:11161873-11161892 MS.gene059114:CDS 30.0%
AATGAAAGAGGCTATTAAAG+AGG - chr1.2:11160621-11160640 MS.gene059114:CDS 30.0%
AATGGAGAACATTCTATTGA+TGG - chr1.2:11159668-11159687 MS.gene059114:intron 30.0%
ATAATGTGTCATACCATTCT+TGG + chr1.2:11161918-11161937 None:intergenic 30.0%
ATATGATGAACGTGAACATT+GGG - chr1.2:11160855-11160874 MS.gene059114:CDS 30.0%
ATGGAGAACATTCTATTGAT+GGG - chr1.2:11159669-11159688 MS.gene059114:intron 30.0%
ATTGACATTTGCTTCTCAAA+AGG + chr1.2:11161096-11161115 None:intergenic 30.0%
CCAAGACTTATATATGCATA+TGG + chr1.2:11160755-11160774 None:intergenic 30.0%
CCATATGCATATATAAGTCT+TGG - chr1.2:11160752-11160771 MS.gene059114:CDS 30.0%
CCTAAAAGAGCAAATACAAA+AGG - chr1.2:11161657-11161676 MS.gene059114:CDS 30.0%
CGTGTTAAAAGAATTTGTGA+TGG - chr1.2:11159995-11160014 MS.gene059114:CDS 30.0%
GAAAATAATGTGCATTGGAA+TGG + chr1.2:11160051-11160070 None:intergenic 30.0%
TATATGATGAACGTGAACAT+TGG - chr1.2:11160854-11160873 MS.gene059114:CDS 30.0%
TATGGAGGATATGAAAACAT+TGG - chr1.2:11160172-11160191 MS.gene059114:CDS 30.0%
TCAAATTCCATTCCAATGTT+AGG + chr1.2:11159773-11159792 None:intergenic 30.0%
TCAATTGCATAAAAGAATCC+TGG + chr1.2:11160310-11160329 None:intergenic 30.0%
TCTTTGGCATATACTTAGAA+AGG - chr1.2:11160672-11160691 MS.gene059114:CDS 30.0%
TCTTTGTAGACATTCATTGA+TGG - chr1.2:11161320-11161339 MS.gene059114:CDS 30.0%
TGAAGATAAATGGCATGAAA+TGG - chr1.2:11160789-11160808 MS.gene059114:CDS 30.0%
TGATCAGTTATGATTGCATT+TGG + chr1.2:11160592-11160611 None:intergenic 30.0%
TGGTATGACACATTATTCTT+AGG - chr1.2:11161922-11161941 MS.gene059114:CDS 30.0%
TTCATATCCTCCATATTCTT+TGG + chr1.2:11160167-11160186 None:intergenic 30.0%
TTGATCTATTTGGAGATGAT+TGG - chr1.2:11160821-11160840 MS.gene059114:CDS 30.0%
! ATATGAAAACATTGGTTGCT+TGG - chr1.2:11160180-11160199 MS.gene059114:CDS 30.0%
! CCTTTTGTATTTGCTCTTTT+AGG + chr1.2:11161660-11161679 None:intergenic 30.0%
! GTCGCATGAAAAATGTATTT+TGG - chr1.2:11160344-11160363 MS.gene059114:CDS 30.0%
!! CATGAAAAATGTATTTTGGG+TGG - chr1.2:11160348-11160367 MS.gene059114:CDS 30.0%
!! TATTTTAAGAAGATGGACCA+AGG - chr1.2:11161383-11161402 MS.gene059114:CDS 30.0%
!!! AAGCAAATTTTTTGCCACAA+TGG - chr1.2:11160141-11160160 MS.gene059114:CDS 30.0%
!!! GTCGCTTTTTTGAGTATAAT+GGG - chr1.2:11161295-11161314 MS.gene059114:intron 30.0%
!!! TGTCGCTTTTTTGAGTATAA+TGG - chr1.2:11161294-11161313 MS.gene059114:intron 30.0%
AAAACATGACTAAGCTTCTC+AGG + chr1.2:11160700-11160719 None:intergenic 35.0%
AAAATCGACAAGGAAAACGT+TGG - chr1.2:11161600-11161619 MS.gene059114:CDS 35.0%
AACGCCGATCTTTATCTAAA+TGG + chr1.2:11160222-11160241 None:intergenic 35.0%
ACTCATTATGCTAAGTCAGT+TGG - chr1.2:11159821-11159840 MS.gene059114:intron 35.0%
AGAAGATGTGTGTTCTAGTA+AGG - chr1.2:11161443-11161462 MS.gene059114:CDS 35.0%
AGACCAAGAACACTTTCATA+TGG - chr1.2:11160527-11160546 MS.gene059114:CDS 35.0%
AGAGAAGACTATCAAGAGTT+TGG - chr1.2:11160382-11160401 MS.gene059114:CDS 35.0%
AGATAAATGGCATGAAATGG+TGG - chr1.2:11160792-11160811 MS.gene059114:CDS 35.0%
AGGTATTTACTGCTTCTCTT+TGG + chr1.2:11161860-11161879 None:intergenic 35.0%
AGTTATGCTTGCACAAGATA+CGG - chr1.2:11159905-11159924 MS.gene059114:intron 35.0%
ATCCCACTCTTTATTCTTCT+TGG + chr1.2:11161687-11161706 None:intergenic 35.0%
ATGCTAAGTCAGTTGGATTT+GGG - chr1.2:11159828-11159847 MS.gene059114:intron 35.0%
ATTGAAACTTTGCACCATGT+TGG - chr1.2:11160109-11160128 MS.gene059114:CDS 35.0%
ATTTGCTTCTCAAAAGGTGA+TGG + chr1.2:11161090-11161109 None:intergenic 35.0%
CAAAATCGATGTCGAGAATT+TGG + chr1.2:11160652-11160671 None:intergenic 35.0%
CACTTTCAATCAAGGTTACT+TGG - chr1.2:11160484-11160503 MS.gene059114:CDS 35.0%
CTCATGCAAGAAAAAAATCC+AGG - chr1.2:11160289-11160308 MS.gene059114:CDS 35.0%
CTCCAAGAAGAATAAAGAGT+GGG - chr1.2:11161682-11161701 MS.gene059114:CDS 35.0%
GAAAATATGGCTTAGAGCAA+TGG - chr1.2:11160555-11160574 MS.gene059114:CDS 35.0%
GAACATTCTATTGATGGGAA+TGG - chr1.2:11159674-11159693 MS.gene059114:intron 35.0%
GCAAGGAAAATAATGTGCAT+TGG + chr1.2:11160056-11160075 None:intergenic 35.0%
GCAATTGATATGGATGATGA+GGG - chr1.2:11160322-11160341 MS.gene059114:CDS 35.0%
GCTATTGAATTTCTCGAAGA+AGG - chr1.2:11161492-11161511 MS.gene059114:CDS 35.0%
TATGCTAAGTCAGTTGGATT+TGG - chr1.2:11159827-11159846 MS.gene059114:intron 35.0%
TCAAAGTTTCTTCAAGTGCA+TGG + chr1.2:11161551-11161570 None:intergenic 35.0%
TCAAGAACCTAACATTGGAA+TGG - chr1.2:11159763-11159782 MS.gene059114:CDS 35.0%
TCAAGATAGAGCAATGAAAG+AGG - chr1.2:11160609-11160628 MS.gene059114:CDS 35.0%
TGCAATTGATATGGATGATG+AGG - chr1.2:11160321-11160340 MS.gene059114:CDS 35.0%
TTAGAAGCAAGCATCATACA+AGG - chr1.2:11161409-11161428 MS.gene059114:CDS 35.0%
TTTAGATAAAGATCGGCGTT+TGG - chr1.2:11160222-11160241 MS.gene059114:CDS 35.0%
! ATTTTCACAGGAAAGTCATC+AGG - chr1.2:11162007-11162026 MS.gene059114:CDS 35.0%
! CATTATTTTCCTTGCCATAG+AGG - chr1.2:11160061-11160080 MS.gene059114:CDS 35.0%
! TTTTCACAGGAAAGTCATCA+GGG - chr1.2:11162008-11162027 MS.gene059114:CDS 35.0%
!! CAACCATATGAAAGTGTTCT+TGG + chr1.2:11160533-11160552 None:intergenic 35.0%
!! GAGCTTTATTGATTCCTCTA+TGG + chr1.2:11160078-11160097 None:intergenic 35.0%
!! TTATTGATTCCTCTATGGCA+AGG + chr1.2:11160073-11160092 None:intergenic 35.0%
!! TTCATGTACCGTTGATTTAG+AGG - chr1.2:11159730-11159749 MS.gene059114:intron 35.0%
!!! GTTGAAGTTTTGGGATTATC+TGG - chr1.2:11161150-11161169 MS.gene059114:intron 35.0%
ACAATGGCCAAAGAATATGG+AGG - chr1.2:11160157-11160176 MS.gene059114:CDS 40.0%
ACACCAATAAAAGGAGCAGA+TGG + chr1.2:11160457-11160476 None:intergenic 40.0%
AGGAGATGCAAATGCAATGT+TGG - chr1.2:11160255-11160274 MS.gene059114:CDS 40.0%
ATGCTTGCTTCTAACATCCT+TGG + chr1.2:11161403-11161422 None:intergenic 40.0%
GCTCCAAGAAGAATAAAGAG+TGG - chr1.2:11161681-11161700 MS.gene059114:CDS 40.0%
TCCATATTCTTTGGCCATTG+TGG + chr1.2:11160158-11160177 None:intergenic 40.0%
TGCTTTACAGGATAGAGAAG+AGG - chr1.2:11161011-11161030 MS.gene059114:intron 40.0%
TTCACCGTTGAGAACATTTG+AGG + chr1.2:11161880-11161899 None:intergenic 40.0%
TTTACAGGATAGAGAAGAGG+CGG - chr1.2:11161014-11161033 MS.gene059114:intron 40.0%
! AAATCCACGTCCTTGTTTGA+AGG - chr1.2:11159952-11159971 MS.gene059114:CDS 40.0%
! ACCGTTAGCCTCTAAATCAA+CGG + chr1.2:11159741-11159760 None:intergenic 40.0%
! ATGCCATCTGCTCCTTTTAT+TGG - chr1.2:11160451-11160470 MS.gene059114:CDS 40.0%
! ATGGAAGTTGTTGATGGGAA+TGG - chr1.2:11159650-11159669 MS.gene059114:intron 40.0%
! CCAGTCTTTGAAAATCGACA+AGG - chr1.2:11161590-11161609 MS.gene059114:CDS 40.0%
!! ACCGTTGATTTAGAGGCTAA+CGG - chr1.2:11159737-11159756 MS.gene059114:intron 40.0%
!! GTATTTTGGGTGGATGCAAA+AGG - chr1.2:11160358-11160377 MS.gene059114:CDS 40.0%
!!! CCTTGTCGATTTTCAAAGAC+TGG + chr1.2:11161593-11161612 None:intergenic 40.0%
!!! CTCGACATCGATTTTGTCTT+TGG - chr1.2:11160656-11160675 MS.gene059114:CDS 40.0%
!!! GGCAAGCTGATTTTAAGACA+TGG - chr1.2:11161040-11161059 MS.gene059114:intron 40.0%
AACAGCTGCATTGCCAAGAA+TGG - chr1.2:11161902-11161921 MS.gene059114:CDS 45.0%
AGAGTGTGATGTCTCGAAGA+AGG - chr1.2:11161257-11161276 MS.gene059114:intron 45.0%
ATAAAGAGTGGGATCGAGAG+AGG - chr1.2:11161693-11161712 MS.gene059114:CDS 45.0%
ATATGGCTTAGAGCAATGGG+TGG - chr1.2:11160559-11160578 MS.gene059114:CDS 45.0%
GAATGGAGAGCAAGTTGTCA+AGG - chr1.2:11159691-11159710 MS.gene059114:intron 45.0%
GCCACAATGGCCAAAGAATA+TGG - chr1.2:11160154-11160173 MS.gene059114:CDS 45.0%
GGTGGTCAAGAACCTAACAT+TGG - chr1.2:11159758-11159777 MS.gene059114:intron 45.0%
TCACATCCCACCTTCAAACA+AGG + chr1.2:11159965-11159984 None:intergenic 45.0%
TGCTTGTTCTCACTCCAACA+TGG + chr1.2:11160126-11160145 None:intergenic 45.0%
TTGTTTGAAGGTGGGATGTG+AGG - chr1.2:11159964-11159983 MS.gene059114:CDS 45.0%
! AGGACGTGGATTTTGTGAAC+TGG + chr1.2:11159945-11159964 None:intergenic 45.0%
! GTTGATTTAGAGGCTAACGG+TGG - chr1.2:11159740-11159759 MS.gene059114:intron 45.0%
! TTGATGGCATTCCAAGCTGT+TGG - chr1.2:11161336-11161355 MS.gene059114:CDS 45.0%
AGGATAGAGAAGAGGCGGAA+AGG - chr1.2:11161019-11161038 MS.gene059114:intron 50.0%
CAACACAGACACCAACAGCT+TGG + chr1.2:11161350-11161369 None:intergenic 50.0%
GGCACAAGCAACCTGTTCTT+AGG - chr1.2:11161061-11161080 MS.gene059114:intron 50.0%
! CCACGTCCTTGTTTGAAGGT+GGG - chr1.2:11159956-11159975 MS.gene059114:CDS 50.0%
! TCCACGTCCTTGTTTGAAGG+TGG - chr1.2:11159955-11159974 MS.gene059114:CDS 50.0%
!! CGGCGTTTGGCTTTAGAATC+AGG - chr1.2:11160235-11160254 MS.gene059114:CDS 50.0%
!! GGTGATGGAGTCCTAAGAAC+AGG + chr1.2:11161075-11161094 None:intergenic 50.0%
CCCACCTTCAAACAAGGACG+TGG + chr1.2:11159959-11159978 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 11159650 11162034 11159650 ID=MS.gene059114
chr1.2 mRNA 11159650 11162034 11159650 ID=MS.gene059114.t1;Parent=MS.gene059114
chr1.2 exon 11161305 11162034 11161305 ID=MS.gene059114.t1.exon1;Parent=MS.gene059114.t1
chr1.2 CDS 11161305 11162034 11161305 ID=cds.MS.gene059114.t1;Parent=MS.gene059114.t1
chr1.2 exon 11159935 11160890 11159935 ID=MS.gene059114.t1.exon2;Parent=MS.gene059114.t1
chr1.2 CDS 11159935 11160890 11159935 ID=cds.MS.gene059114.t1;Parent=MS.gene059114.t1
chr1.2 exon 11159761 11159838 11159761 ID=MS.gene059114.t1.exon3;Parent=MS.gene059114.t1
chr1.2 CDS 11159761 11159838 11159761 ID=cds.MS.gene059114.t1;Parent=MS.gene059114.t1
chr1.2 exon 11159650 11159667 11159650 ID=MS.gene059114.t1.exon4;Parent=MS.gene059114.t1
chr1.2 CDS 11159650 11159667 11159650 ID=cds.MS.gene059114.t1;Parent=MS.gene059114.t1
Gene Sequence

>MS.gene059114

ATGGAAGTTGTTGATGGGAATGGAGAACATTCTATTGATGGGAATGGAGAGCAAGTTGTCAAGGAGATTGATGACAATGATTCATGTACCGTTGATTTAGAGGCTAACGGTGGTCAAGAACCTAACATTGGAATGGAATTTGATTCACAAGAAAATGCTTATTCATTCTACACTCATTATGCTAAGTCAGTTGGATTTGGGATATCAATTAAAAATAGTCGTCGTTCAAAGATTTCTAGAGAGTTTATTGATGTAAGTTATGCTTGCACAAGATACGGCAAGAAGCGAGAATCCAGTTCACAAAATCCACGTCCTTGTTTGAAGGTGGGATGTGAGGCTAGTTTACGTGTTAAAAGAATTTGTGATGGAAAATGGATTGTTCATAGCTTCATTAAATTCCATTCCAATGCACATTATTTTCCTTGCCATAGAGGAATCAATAAAGCTCAAAAGCATTCTATTGAAACTTTGCACCATGTTGGAGTGAGAACAAGCAAATTTTTTGCCACAATGGCCAAAGAATATGGAGGATATGAAAACATTGGTTGCTTGGAGAAAGATGTAAGAAACCATTTAGATAAAGATCGGCGTTTGGCTTTAGAATCAGGAGATGCAAATGCAATGTTGGATTGTTTTATACTCATGCAAGAAAAAAATCCAGGATTCTTTTATGCAATTGATATGGATGATGAGGGTCGCATGAAAAATGTATTTTGGGTGGATGCAAAAGGTAGAGAAGACTATCAAGAGTTTGGAGATGTGATTTCATTTGATACTACATATATCACAAATAAGTACAAAATGCCATCTGCTCCTTTTATTGGTGTAAACAATCACTTTCAATCAAGGTTACTTGGCTGTGCATTACTCTCAGATGAGACCAAGAACACTTTCATATGGTTGATGAAAATATGGCTTAGAGCAATGGGTGGAAAACATCCAAATGCAATCATAACTGATCAAGATAGAGCAATGAAAGAGGCTATTAAAGAGGTATTTCCAAATTCTCGACATCGATTTTGTCTTTGGCATATACTTAGAAAGGTGCCTGAGAAGCTTAGTCATGTTTTAAGAGATGACGAAGACTTCATGAGATATCTCACCATATGCATATATAAGTCTTGGTCAAAACAACAATTTGAAGATAAATGGCATGAAATGGTGGAAAAATTTGATCTATTTGGAGATGATTGGATTCACTCTTTATATGATGAACGTGAACATTGGGTTCCTGTTTACATGAATGATACATTTTTTGGTGGCTTGTCAACAACTCAAAGATCAGAGAGCATTAACTCTTTTTTTGACAAATATGTATGTAAGAAAACTACATTAAAGGAATTTTTCGAAAAATATAAAGTTGCTTTACAGGATAGAGAAGAGGCGGAAAGGCAAGCTGATTTTAAGACATGGCACAAGCAACCTGTTCTTAGGACTCCATCACCTTTTGAGAAGCAAATGTCAATGATATATACACATGAAATCTTCAAGAAATTTCAAGTTGAAGTTTTGGGATTATCTGGATGTCGTATTGTGAAAGAACATAATGATAATCTTACTGCCACTTTTACAATTTTCGACTTTCATAAAAATGACGAGTTTATTGTAGAGTGTGATGTCTCGAAGAAGGAAATATCATGTCTGTGTCGCTTTTTTGAGTATAATGGGTATCTTTGTAGACATTCATTGATGGCATTCCAAGCTGTTGGTGTCTGTGTTGTCCCATCACACTATATTTTAAGAAGATGGACCAAGGATGTTAGAAGCAAGCATCATACAAGGATAATGAAAGAAGAAGATGTGTGTTCTAGTAAGGAGATATATGATTCTTTATATCAAAAGGCTATTGAATTTCTCGAAGAAGGATCGCTAAGTTTTGAGAGTTACAATTTGGCTTGCCATGCACTTGAAGAAACTTTGAAACAATGTGCAACTATCAACCAGTCTTTGAAAATCGACAAGGAAAACGTTGGTCAGAGCAGTTTACGTGTGAAGCTAGTGCGTGATCCTAAAAGAGCAAATACAAAAGGGGCTCCAAGAAGAATAAAGAGTGGGATCGAGAGAGGTCGTAAGAGAACATCTAGTTGTAAAGTAAAAAAGGTTAGAAGATTTTAACTTGATCAAAATTTGTATAATGTTTTTTTTTTTTTATTTTAGCATTATTTCTCATTGTTATGTATTTGTTGTGATTTTAAGTCTGCTATTGTCCAAAGAGAAGCAGTAAATACCTCAAATGTTCTCAACGGTGAAGTAACAGCTGCATTGCCAAGAATGGTATGACACATTATTCTTAGGTGATTTAATATTAAGTTAGTAGATACATTTTGAGTTTTCAACTAATTGTCTTTTGTTTTCTTATTTTCACAGGAAAGTCATCAGGGTTGA
Protein sequence

>MS.gene059114.t1

MEVVDGNGEHSIDGNGEQVVKEIDDNDSCTVDLEANGGQEPNIGMEFDSQENAYSFYTHYAKSVGFGISIKNSRRSKISREFIDVSYACTRYGKKRESSSQNPRPCLKVGCEASLRVKRICDGKWIVHSFIKFHSNAHYFPCHRGINKAQKHSIETLHHVGVRTSKFFATMAKEYGGYENIGCLEKDVRNHLDKDRRLALESGDANAMLDCFILMQEKNPGFFYAIDMDDEGRMKNVFWVDAKDKWHEMVEKFDLFGDDWIHSLYDEREHWVPVYMNDTFFGGLSTTQRSESINSFFDKYVCKKTTLKEFFEKYKVALQDREEAERQADFKTWHKQPVLRTPSPFEKQMSMIYTHEIFKKFQVEVLGLSGCRIVKEHNDNLTATFTIFDFHKNDEFIVECDVSKKEISCLCRFFEYNGYLCRHSLMAFQAVGVCVVPSHYILRRWTKDVRSKHHTRIMKEEDVCSSKEIYDSLYQKAIEFLEEGSLSFESYNLACHALEETLKQCATINQSLKIDKENVGQSSLRVKLVRDPKRANTKGAPRRIKSGIERGRKRTSSCKVKKSAIVQREAVNTSNVLNGEVTAALPRMESHQG