AlfalfaGEDB | MS.gene059461

M. sativa cultivar XinJiangDaYe / MS.gene059461

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059461.t1	XP_003588623.2	93.3	584	36	2	1	581	76	659	2.50E-289	1004.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059461.t1	Q84JQ4	49.5	574	280	6	3	567	75	647	6.2e-124	446.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059461.t1	G7I573	93.3	584	36	2	1	581	76	659	1.8e-289	1004.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059461.t1	MTR_1g009270	95.377	584	24	2	1	581	76	659	0.0	1098
MS.gene059461.t1	MTR_8g087420	63.553	546	185	6	1	540	78	615	0.0	655
MS.gene059461.t1	MTR_8g101260	47.653	554	258	5	1	540	85	620	5.08e-175	509
MS.gene059461.t1	MTR_2g105900	45.578	588	278	9	1	555	62	640	2.21e-168	493
MS.gene059461.t1	MTR_6g093050	46.004	563	270	7	1	544	77	624	8.15e-167	489
MS.gene059461.t1	MTR_2g042710	40.323	558	301	9	1	535	79	627	5.86e-137	412
MS.gene059461.t1	MTR_4g124990	40.395	557	308	6	1	537	74	626	4.26e-135	407
MS.gene059461.t1	MTR_8g021350	38.617	593	308	8	1	539	83	673	1.12e-127	391
MS.gene059461.t1	MTR_1g061590	34.932	584	316	13	15	537	67	647	3.49e-100	318
MS.gene059461.t1	MTR_3g093710	35.135	555	342	9	1	547	81	625	8.67e-96	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059461.t1	AT5G35390	47.119	590	275	9	3	567	85	662	5.36e-179	521
MS.gene059461.t1	AT4G31250	46.242	612	263	12	1	566	84	675	3.43e-175	512
MS.gene059461.t1	AT2G07040	46.441	590	274	10	3	567	75	647	3.82e-167	490
MS.gene059461.t1	AT3G20190	47.160	581	287	9	1	568	104	677	4.82e-164	483
MS.gene059461.t1	AT1G50610	46.193	591	291	7	1	568	98	684	1.54e-160	475
MS.gene059461.t1	AT3G42880	37.324	568	312	6	1	536	76	631	1.29e-124	380
MS.gene059461.t1	AT5G20690	36.364	583	320	11	1	537	81	658	1.35e-119	369
MS.gene059461.t1	AT3G20190	45.946	444	220	9	138	568	52	488	8.40e-116	353
MS.gene059461.t1	AT2G26730	38.624	567	322	12	2	551	77	634	1.61e-104	329
MS.gene059461.t1	AT1G72460	37.345	565	327	10	1	540	75	637	1.94e-99	315

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Find 105 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGACATTTGGTGTCT+TGG	0.382595	1.3:-10875306	MS.gene059461:CDS
AAAATCACCAGCTAAATCAA+TGG	0.491609	1.3:+10876420	None:intergenic
AAACCATGCACAACAATACA+TGG	0.536697	1.3:-10875376	MS.gene059461:CDS
AAAGTTCCGATTTAGCAACA+TGG	0.634297	1.3:-10875218	MS.gene059461:CDS
AAATTAGAGAATATGGGACT+AGG	0.567285	1.3:-10877262	None:intergenic
AAGAAACTTGTGAAGTTAAG+GGG	0.529804	1.3:-10877145	MS.gene059461:CDS
AAGTCCAAATCCAAAAGTCT+AGG	0.570232	1.3:+10876989	None:intergenic
AAGTTCCGATTTAGCAACAT+GGG	0.629871	1.3:-10875217	MS.gene059461:CDS
AATATAACGGGAACAAGAAA+TGG	0.433714	1.3:-10875147	MS.gene059461:CDS
AATCTCTTAACCACCACAGT+TGG	0.602185	1.3:+10876256	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCACCAGCTAAATCAA+TGG	+	chr1.3:10875736-10875755	None:intergenic	30.0%
AAGAAACTTGTGAAGTTAAG+GGG	-	chr1.3:10875008-10875027	MS.gene059461:CDS	30.0%
AATTGATGTAGACACATTGT+TGG	-	chr1.3:10874920-10874939	MS.gene059461:CDS	30.0%
ATTGTTGGAATTGACTGATT+TGG	-	chr1.3:10874935-10874954	MS.gene059461:CDS	30.0%
ATTGTTTAGCATTACATTGG+AGG	+	chr1.3:10876707-10876726	None:intergenic	30.0%
CAAGAAACTTGTGAAGTTAA+GGG	-	chr1.3:10875007-10875026	MS.gene059461:CDS	30.0%
CTCATACTAGAATTACTAAC+AGG	-	chr1.3:10876874-10876893	MS.gene059461:CDS	30.0%
CTGTTAGTAATTCTAGTATG+AGG	+	chr1.3:10876876-10876895	None:intergenic	30.0%
GATAAGTTTGGAAATGTTAC+AGG	-	chr1.3:10877246-10877265	MS.gene059461:CDS	30.0%
GTCAATAACAACACATTTGA+GGG	-	chr1.3:10874969-10874988	MS.gene059461:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	10874903	10877272	10874903	ID=MS.gene059461
chr1.3	mRNA	10874903	10877272	10874903	ID=MS.gene059461.t1;Parent=MS.gene059461
chr1.3	exon	10876855	10877272	10876855	ID=MS.gene059461.t1.exon1;Parent=MS.gene059461.t1
chr1.3	CDS	10876855	10877272	10876855	ID=cds.MS.gene059461.t1;Parent=MS.gene059461.t1
chr1.3	exon	10876086	10876721	10876086	ID=MS.gene059461.t1.exon2;Parent=MS.gene059461.t1
chr1.3	CDS	10876086	10876721	10876086	ID=cds.MS.gene059461.t1;Parent=MS.gene059461.t1
chr1.3	exon	10874903	10875594	10874903	ID=MS.gene059461.t1.exon3;Parent=MS.gene059461.t1
chr1.3	CDS	10874903	10875594	10874903	ID=cds.MS.gene059461.t1;Parent=MS.gene059461.t1

Gene Sequence

>MS.gene059461

ATGGGACTAGGTGGGAAAATTGATGTAGACACATTGTTGGAATTGACTGATTTGGTTAGTTTTAGTGTCAATAACAACACATTTGAGGGTCCAATGCCTGAATTCAAGAAACTTGTGAAGTTAAGGGGATTGTTTTTGTCTGATAATAAATTCTATGGTGAAATTTTAGATGATAGTTTTGAGGGTATGGGAAATCTTAAAAGGGTATTTTTGGCAGGAAATGGGTTCAATGGTCATATTCCTCTTTCACTTGCTCAATTGCCTAGACTTTTGGATTTGGACTTGCATGGAAATAGTTTTGGAGGTAACATACCAGAATTTCAACAAAATGGTTTTAGAAAATTTGACTTGTCTAACAATCAATTGGAGGGTCCAATACCAAATAGCTTAAGCAATGAGCCTTCAACTTCATTTTCTGGTAAGTAATGATTCATTATGTTTTTGCATAAACATACTTAATTTTTTTCATTTAAAAAAAAAAAAAAAAACTTATTTGGAAAATTCAATGATATATTGTGTTTTTTTCTATCTAAATTTTCTTGAATATGCAGCCAACAAAGGCCTATGTGGAAAACCTTTGAACAATCCTTGCAACACACCCCCAACAAAATCTATTGTGCAACCTAATTCAGATCCTTCAACTCAAGGAAAAGGAAAGAACAAAAAAATCCTTATAGTTGTCATTGTAGTGGTAGCTATGGTTGTTTTAGCTTCAATATTAGCACTTTTGTTCATCCAAAGCCGCCGGAGACGAAGATCAGAACAAGACCAGCCCATATTAGGCCTACAACTGAATTCTGAAAGCAGTCCAAGTGTCAAGGAGACAAAATCCATTGATTTAGCTGGTGATTTTAGTAAAGGCGAAAATGGAGAATTGAATTTTGTTAGGGAAGATAAAGGTGGTTTTGAGTTGCAAGATCTTCTTAGGGCTTCAGCTGAAGTGCTTGGAAGTGGAAGTTTTGGATCAACTTATAAAGCAATTGTTTTGAATGGACCAACTGTGGTGGTTAAGAGATTTAGGCACATGAATAATGTTGGGAAACAAGAGTTTTTTGAACACATGAAAAAGCTTGGAAGTTTGACACATCCTAATCTACTCCCTCTTATTGCATTCTACTACAAAAAAGAAGAGAAGTTTTTGGTTTATGATTTTGGTGAAAATGGTAGCTTGGCTAGTCATCTACATGGTATGCAACATTATATTTTTATGAATTCTTTATGCGGTCATATAAATCGTTATCGTTTAACGTATTTGACTTTAATCATATCTACCTTAAAATCGTACAAAATTAATCACATATTTTATTTAGAAATTACAATAATAGATATAATAGTTTTAGTCAGAATCTGGATAACTTAACAAATCAATGCAATAATTAGATTTCAATTTTTATTCTTGGCTCAGGTCTTCTTTGGATCGACTTATTTGAGCTTATCTATTAAAATCACTTGTTAGACTGTTAGAGAGAGCTTACGGAAACAAACATGTCCATAAACTATATTACATAGCTTATTTCCGTAAACGTCACAAAATAGCTATTGAAAAAAACTTATAGCTTATATGAAAACAATTTGACCATTTCATCTTTTACTATAGAAATAGCTTATACATTAGCATTTATATGATAAAACGCTTATATGCTATAAGTGCTTAACAATTTTTACATTGATTTTGCAGGTAGAAACGGCATTGTACTAAACTGGTCAACTCGTCTAAAAATCATAAAAGGAGTAGCAAGAGGCTTAGCACACCTCTACAAAGAATTCCCTACACAAAACCTACCACATGGTCATCTAAAATCCTCCAATGTAATGCTAAACAATTCATTTGACCCACTTTTAACTGAGTATGGACTTGTACCTATAACAAACAAAAACCATGCACAACAATACATGGCATCCTATAAATCACCGGAAGTCACACACTTCAATAGACCAAATGAAAAAACAGACATTTGGTGTCTTGGAATCCTCATACTAGAATTACTAACAGGAAAATTTCCAGCAAATTATTTAAGACATGGAAAAGGCGAAAGTTCCGATTTAGCAACATGGGTGAATTCAGTTGTAAGGGAAGAATGGACTGGTGAAGTGTTTGATAAGAATATAACGGGAACAAGAAATGGTGAAGGTGAGATGTTGAAGCTTTTGAGGATTGGAATGTATTGTTGTGAATGGAGTGTTGAGAGGAGATGGGATTGGAAAGAAGCTTTGGATAAGATTGAAGAGCTTAAGGAGAATGATGGTGAAGATGAATCTTTTTCTTATGTTAGTGAAGGTGATTTGTATTCAAGAGGTGCAACTGAAGATGAATTTTCTTTTTCTGTTACTGATTCACAGGCTGATAAGTTTGGAAATGTTACAGGCTAG

Protein sequence

>MS.gene059461.t1

MGLGGKIDVDTLLELTDLVSFSVNNNTFEGPMPEFKKLVKLRGLFLSDNKFYGEILDDSFEGMGNLKRVFLAGNGFNGHIPLSLAQLPRLLDLDLHGNSFGGNIPEFQQNGFRKFDLSNNQLEGPIPNSLSNEPSTSFSANKGLCGKPLNNPCNTPPTKSIVQPNSDPSTQGKGKNKKILIVVIVVVAMVVLASILALLFIQSRRRRRSEQDQPILGLQLNSESSPSVKETKSIDLAGDFSKGENGELNFVREDKGGFELQDLLRASAEVLGSGSFGSTYKAIVLNGPTVVVKRFRHMNNVGKQEFFEHMKKLGSLTHPNLLPLIAFYYKKEEKFLVYDFGENGSLASHLHGRNGIVLNWSTRLKIIKGVARGLAHLYKEFPTQNLPHGHLKSSNVMLNNSFDPLLTEYGLVPITNKNHAQQYMASYKSPEVTHFNRPNEKTDIWCLGILILELLTGKFPANYLRHGKGESSDLATWVNSVVREEWTGEVFDKNITGTRNGEGEMLKLLRIGMYCCEWSVERRWDWKEALDKIEELKENDGEDESFSYVSEGDLYSRGATEDEFSFSVTDSQADKFGNVTG