Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059527.t1 | XP_004505405.1 | 78.9 | 237 | 38 | 2 | 1 | 228 | 1 | 234 | 1.10E-94 | 356.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059527.t1 | Q9FJK3 | 69.2 | 156 | 48 | 0 | 1 | 156 | 1 | 156 | 7.0e-55 | 215.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059527.t1 | A0A1S2YJE0 | 78.9 | 237 | 38 | 2 | 1 | 228 | 1 | 234 | 7.6e-95 | 356.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene059527.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059527.t1 | MTR_3g065100 | 76.033 | 242 | 40 | 4 | 1 | 226 | 1 | 240 | 3.24e-114 | 327 |
MS.gene059527.t1 | MTR_8g036130 | 56.098 | 246 | 84 | 7 | 1 | 224 | 1 | 244 | 6.87e-82 | 244 |
MS.gene059527.t1 | MTR_3g466980 | 53.846 | 234 | 84 | 6 | 1 | 223 | 1 | 221 | 1.36e-79 | 238 |
MS.gene059527.t1 | MTR_4g032620 | 50.649 | 231 | 104 | 5 | 1 | 224 | 1 | 228 | 2.53e-71 | 217 |
MS.gene059527.t1 | MTR_4g031910 | 48.291 | 234 | 103 | 5 | 1 | 224 | 1 | 226 | 6.51e-63 | 196 |
MS.gene059527.t1 | MTR_4g032290 | 49.160 | 238 | 97 | 5 | 1 | 224 | 1 | 228 | 1.04e-61 | 193 |
MS.gene059527.t1 | MTR_3g466830 | 53.896 | 154 | 71 | 0 | 3 | 156 | 2 | 155 | 1.23e-54 | 172 |
MS.gene059527.t1 | MTR_4g032260 | 61.290 | 155 | 59 | 1 | 1 | 154 | 1 | 155 | 1.81e-54 | 172 |
MS.gene059527.t1 | MTR_4g063790 | 51.515 | 165 | 79 | 1 | 1 | 164 | 1 | 165 | 6.23e-54 | 171 |
MS.gene059527.t1 | MTR_2g035610 | 67.213 | 122 | 40 | 0 | 1 | 122 | 1 | 122 | 8.96e-52 | 164 |
MS.gene059527.t1 | MTR_5g047580 | 51.282 | 156 | 75 | 1 | 1 | 156 | 1 | 155 | 7.51e-50 | 160 |
MS.gene059527.t1 | MTR_3g467080 | 50.955 | 157 | 70 | 2 | 1 | 153 | 1 | 154 | 2.69e-49 | 159 |
MS.gene059527.t1 | MTR_3g466890 | 50.000 | 154 | 77 | 0 | 3 | 156 | 2 | 155 | 1.99e-47 | 154 |
MS.gene059527.t1 | MTR_5g075380 | 43.210 | 162 | 92 | 0 | 1 | 162 | 1 | 162 | 3.41e-46 | 151 |
MS.gene059527.t1 | MTR_2g016210 | 45.679 | 162 | 87 | 1 | 1 | 161 | 1 | 162 | 3.21e-43 | 146 |
MS.gene059527.t1 | MTR_3g031100 | 43.030 | 165 | 93 | 1 | 1 | 164 | 1 | 165 | 3.91e-43 | 145 |
MS.gene059527.t1 | MTR_7g011950 | 52.229 | 157 | 74 | 1 | 1 | 157 | 1 | 156 | 1.29e-42 | 142 |
MS.gene059527.t1 | MTR_1g077390 | 47.134 | 157 | 82 | 1 | 1 | 157 | 1 | 156 | 2.35e-42 | 141 |
MS.gene059527.t1 | MTR_1g084950 | 51.282 | 156 | 75 | 1 | 1 | 156 | 1 | 155 | 2.15e-41 | 138 |
MS.gene059527.t1 | MTR_1g090697 | 42.308 | 156 | 89 | 1 | 1 | 156 | 1 | 155 | 8.17e-40 | 134 |
MS.gene059527.t1 | MTR_4g028720 | 49.682 | 157 | 78 | 1 | 1 | 157 | 1 | 156 | 9.13e-40 | 134 |
MS.gene059527.t1 | MTR_1g090783 | 42.208 | 154 | 88 | 1 | 3 | 156 | 2 | 154 | 1.69e-39 | 134 |
MS.gene059527.t1 | MTR_1g077320 | 48.408 | 157 | 80 | 1 | 1 | 157 | 1 | 156 | 1.12e-38 | 132 |
MS.gene059527.t1 | MTR_3g465410 | 46.715 | 137 | 72 | 1 | 29 | 164 | 1 | 137 | 1.83e-37 | 128 |
MS.gene059527.t1 | MTR_2g035580 | 44.805 | 154 | 85 | 0 | 1 | 154 | 1 | 154 | 3.24e-37 | 128 |
MS.gene059527.t1 | MTR_3g031240 | 39.264 | 163 | 96 | 2 | 1 | 161 | 1 | 162 | 1.32e-36 | 127 |
MS.gene059527.t1 | MTR_3g466900 | 47.200 | 125 | 66 | 0 | 32 | 156 | 2 | 126 | 3.35e-36 | 124 |
MS.gene059527.t1 | MTR_1g090710 | 39.490 | 157 | 93 | 2 | 1 | 156 | 1 | 156 | 1.21e-35 | 124 |
MS.gene059527.t1 | MTR_3g466930 | 47.200 | 125 | 66 | 0 | 32 | 156 | 2 | 126 | 1.57e-34 | 120 |
MS.gene059527.t1 | MTR_1g077300 | 47.771 | 157 | 79 | 2 | 1 | 157 | 1 | 154 | 2.88e-34 | 120 |
MS.gene059527.t1 | MTR_5g047560 | 41.667 | 156 | 74 | 2 | 1 | 156 | 1 | 139 | 2.49e-31 | 112 |
MS.gene059527.t1 | MTR_7g055800 | 47.899 | 119 | 34 | 2 | 1 | 119 | 1 | 91 | 3.10e-27 | 100 |
MS.gene059527.t1 | MTR_4g084780 | 94.231 | 52 | 3 | 0 | 74 | 125 | 1 | 52 | 8.37e-27 | 101 |
MS.gene059527.t1 | MTR_4g028800 | 63.889 | 72 | 24 | 1 | 1 | 72 | 1 | 70 | 1.54e-25 | 95.5 |
MS.gene059527.t1 | MTR_7g055790 | 49.550 | 111 | 38 | 1 | 1 | 111 | 59 | 151 | 6.93e-24 | 93.6 |
MS.gene059527.t1 | MTR_4g019670 | 37.594 | 133 | 80 | 1 | 1 | 130 | 1 | 133 | 1.01e-23 | 99.0 |
MS.gene059527.t1 | MTR_7g106510 | 36.090 | 133 | 82 | 1 | 1 | 130 | 1 | 133 | 1.14e-22 | 95.9 |
MS.gene059527.t1 | MTR_3g093900 | 28.655 | 171 | 120 | 1 | 3 | 171 | 6 | 176 | 1.79e-21 | 92.8 |
MS.gene059527.t1 | MTR_7g055940 | 45.283 | 106 | 30 | 2 | 1 | 106 | 1 | 78 | 4.69e-21 | 84.0 |
MS.gene059527.t1 | MTR_6g018920 | 29.004 | 231 | 139 | 9 | 1 | 222 | 1 | 215 | 1.47e-19 | 85.9 |
MS.gene059527.t1 | MTR_6g005450 | 28.390 | 236 | 136 | 9 | 1 | 223 | 1 | 216 | 2.25e-19 | 85.5 |
MS.gene059527.t1 | MTR_2g035590 | 54.878 | 82 | 36 | 1 | 74 | 154 | 1 | 82 | 3.47e-18 | 77.0 |
MS.gene059527.t1 | MTR_1g114730 | 35.398 | 113 | 66 | 3 | 1 | 107 | 1 | 112 | 9.94e-18 | 80.9 |
MS.gene059527.t1 | MTR_6g005440 | 26.068 | 234 | 135 | 10 | 1 | 223 | 1 | 207 | 1.36e-14 | 72.0 |
MS.gene059527.t1 | MTR_4g045977 | 31.884 | 138 | 90 | 3 | 1 | 134 | 1 | 138 | 8.67e-14 | 70.1 |
MS.gene059527.t1 | MTR_4g107170 | 28.777 | 139 | 93 | 4 | 1 | 134 | 1 | 138 | 1.55e-11 | 62.4 |
MS.gene059527.t1 | MTR_1g033930 | 38.158 | 76 | 46 | 1 | 84 | 158 | 41 | 116 | 2.37e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059527.t1 | AT5G48670 | 69.231 | 156 | 48 | 0 | 1 | 156 | 1 | 156 | 1.03e-68 | 214 |
MS.gene059527.t1 | AT1G65300 | 45.349 | 172 | 93 | 1 | 3 | 174 | 2 | 172 | 1.61e-50 | 166 |
MS.gene059527.t1 | AT1G65330 | 46.154 | 182 | 93 | 1 | 3 | 184 | 2 | 178 | 3.20e-49 | 162 |
MS.gene059527.t1 | AT3G05860 | 52.349 | 149 | 71 | 0 | 1 | 149 | 1 | 149 | 1.51e-48 | 158 |
MS.gene059527.t1 | AT3G05860 | 52.349 | 149 | 71 | 0 | 1 | 149 | 1 | 149 | 6.34e-48 | 158 |
MS.gene059527.t1 | AT3G05860 | 52.349 | 149 | 71 | 0 | 1 | 149 | 1 | 149 | 1.02e-47 | 158 |
MS.gene059527.t1 | AT5G26630 | 45.055 | 182 | 100 | 0 | 1 | 182 | 1 | 182 | 1.78e-46 | 154 |
MS.gene059527.t1 | AT5G26650 | 43.094 | 181 | 102 | 1 | 4 | 184 | 2 | 181 | 3.34e-46 | 157 |
MS.gene059527.t1 | AT5G27960 | 42.541 | 181 | 103 | 1 | 4 | 184 | 2 | 181 | 3.93e-45 | 153 |
MS.gene059527.t1 | AT1G31630 | 40.230 | 174 | 100 | 4 | 3 | 175 | 2 | 172 | 5.12e-42 | 145 |
MS.gene059527.t1 | AT5G27810 | 67.742 | 93 | 30 | 0 | 29 | 121 | 1 | 93 | 1.13e-41 | 138 |
MS.gene059527.t1 | AT1G31640 | 38.172 | 186 | 106 | 2 | 3 | 180 | 2 | 186 | 2.98e-41 | 146 |
MS.gene059527.t1 | AT5G26580 | 39.130 | 184 | 96 | 2 | 1 | 184 | 1 | 168 | 2.36e-35 | 128 |
MS.gene059527.t1 | AT2G28700 | 34.031 | 191 | 115 | 3 | 1 | 182 | 1 | 189 | 1.14e-34 | 126 |
MS.gene059527.t1 | AT1G22590 | 37.821 | 156 | 88 | 2 | 1 | 153 | 1 | 150 | 7.04e-28 | 104 |
MS.gene059527.t1 | AT2G40210 | 37.356 | 174 | 97 | 3 | 1 | 171 | 1 | 165 | 2.13e-24 | 99.8 |
MS.gene059527.t1 | AT5G06500 | 35.938 | 128 | 82 | 0 | 1 | 128 | 1 | 128 | 2.07e-21 | 89.4 |
MS.gene059527.t1 | AT5G55690 | 29.940 | 167 | 95 | 3 | 1 | 160 | 1 | 152 | 1.58e-15 | 73.9 |
MS.gene059527.t1 | AT5G55690 | 29.940 | 167 | 95 | 3 | 1 | 160 | 1 | 152 | 1.58e-15 | 73.9 |
MS.gene059527.t1 | AT5G58890 | 28.455 | 246 | 121 | 13 | 1 | 194 | 1 | 243 | 8.86e-14 | 69.3 |
MS.gene059527.t1 | AT2G15660 | 24.427 | 131 | 98 | 1 | 38 | 168 | 31 | 160 | 3.88e-13 | 67.0 |
MS.gene059527.t1 | AT5G35120 | 34.545 | 110 | 63 | 3 | 84 | 188 | 1 | 106 | 7.45e-12 | 60.5 |
MS.gene059527.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 1.86e-11 | 62.4 |
MS.gene059527.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 1.86e-11 | 62.4 |
MS.gene059527.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 1.86e-11 | 62.4 |
MS.gene059527.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 1.86e-11 | 62.4 |
MS.gene059527.t1 | AT1G59930 | 33.636 | 110 | 64 | 3 | 84 | 188 | 1 | 106 | 4.12e-11 | 59.3 |
Find 60 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATTGCTCTTTCGCCTTT+TGG | 0.163712 | 4.4:+27724913 | None:intergenic |
AACACTTCTCAATGGGAAAA+TGG | 0.166654 | 4.4:+27724522 | None:intergenic |
AATTTGACCTTGAGATTTCT+TGG | 0.216746 | 4.4:+27724725 | None:intergenic |
TATGGTTGATTTAAATGATA+TGG | 0.252561 | 4.4:-27724802 | MS.gene059527:CDS |
GGAGATGTTTGTCAACAAAA+TGG | 0.262030 | 4.4:-27724558 | MS.gene059527:CDS |
TTTGTCAACAAAATGGATTT+TGG | 0.274730 | 4.4:-27724551 | MS.gene059527:CDS |
TTGATGGGTGGTGGTGGTGG+TGG | 0.292498 | 4.4:-27724600 | MS.gene059527:CDS |
CCACCAATGGTGACTAATAT+TGG | 0.300159 | 4.4:-27724690 | MS.gene059527:CDS |
TTGAGAATCTTCTTCAATCT+TGG | 0.324822 | 4.4:+27724662 | None:intergenic |
GAAGAAAGGTCTAATGAAAA+AGG | 0.328619 | 4.4:-27725123 | MS.gene059527:CDS |
TCTTAGTGCAGGTAAACTTA+TGG | 0.346187 | 4.4:-27724835 | MS.gene059527:CDS |
AGAGGTTTGGCCATCTCAAT+TGG | 0.352415 | 4.4:-27725030 | MS.gene059527:CDS |
ATGAATTTGATGGGTGGTGG+TGG | 0.376740 | 4.4:-27724606 | MS.gene059527:CDS |
AATTTGATGGGTGGTGGTGG+TGG | 0.379151 | 4.4:-27724603 | MS.gene059527:CDS |
TGGGAATGACAAAATTCCTT+TGG | 0.384017 | 4.4:-27724580 | MS.gene059527:CDS |
ACTTGAAAGAGATTAATAGA+AGG | 0.404437 | 4.4:-27724761 | MS.gene059527:CDS |
TCATAACCAACGACTCTTCA+AGG | 0.405543 | 4.4:-27725166 | MS.gene059527:CDS |
ACTTATGGACAATATAAGTA+TGG | 0.408397 | 4.4:-27724820 | MS.gene059527:CDS |
TGAACTTGTTAAGCACCCTT+TGG | 0.411364 | 4.4:+27725003 | None:intergenic |
ACACTTCTCAATGGGAAAAT+GGG | 0.417391 | 4.4:+27724523 | None:intergenic |
ATGATCCTCAACCAGAGGTT+TGG | 0.418715 | 4.4:-27725043 | MS.gene059527:CDS |
TCTCAATGGGAAAATGGGTT+TGG | 0.422322 | 4.4:+27724528 | None:intergenic |
ACCTCTGGTTGAGGATCATA+AGG | 0.423494 | 4.4:+27725047 | None:intergenic |
GGGAATGACAAAATTCCTTT+GGG | 0.443340 | 4.4:-27724579 | MS.gene059527:CDS |
AAGGAAAGATAATAGAGAAA+AGG | 0.454421 | 4.4:-27724883 | MS.gene059527:CDS |
CAAGCACAACACTTCTCAAT+GGG | 0.463195 | 4.4:+27724515 | None:intergenic |
TTTATGAATTTGATGGGTGG+TGG | 0.465768 | 4.4:-27724609 | MS.gene059527:CDS |
ACATTTGTTTATGAATTTGA+TGG | 0.467105 | 4.4:-27724616 | MS.gene059527:CDS |
CTTGAAAGAGATTAATAGAA+GGG | 0.469560 | 4.4:-27724760 | MS.gene059527:CDS |
GGAAGGCAGCATTCAAGAAA+AGG | 0.470664 | 4.4:-27725145 | MS.gene059527:CDS |
TTTCACCTTCTTTCTAGTCA+TGG | 0.477262 | 4.4:+27725196 | None:intergenic |
AATTGAGATGGCCAAACCTC+TGG | 0.478913 | 4.4:+27725032 | None:intergenic |
ATCTCAAGGTCAAATTCAAA+TGG | 0.486453 | 4.4:-27724718 | MS.gene059527:CDS |
TCTAAGACAAAGAATCCAAA+AGG | 0.491661 | 4.4:-27724928 | MS.gene059527:CDS |
GAGGTTTGGCCATCTCAATT+GGG | 0.496817 | 4.4:-27725029 | MS.gene059527:CDS |
AGTGAACTTAGCACCCTTTG+TGG | 0.500307 | 4.4:-27725098 | MS.gene059527:CDS |
ATCTCAATTGGGAGTCCAAA+GGG | 0.510300 | 4.4:-27725018 | MS.gene059527:CDS |
ATGTTTCAATGTCTTAGTGC+AGG | 0.513453 | 4.4:-27724846 | MS.gene059527:CDS |
TGCCTTCCTTGAAGAGTCGT+TGG | 0.516280 | 4.4:+27725160 | None:intergenic |
ACAAGCATCAATTCCACAAA+GGG | 0.520783 | 4.4:+27725085 | None:intergenic |
CATTTGTTTATGAATTTGAT+GGG | 0.537456 | 4.4:-27724615 | MS.gene059527:CDS |
CATCTCAATTGGGAGTCCAA+AGG | 0.551709 | 4.4:-27725019 | MS.gene059527:CDS |
CTTTGGACTCCCAATTGAGA+TGG | 0.556461 | 4.4:+27725020 | None:intergenic |
TCAAATGGCACCACCACCAA+TGG | 0.556616 | 4.4:-27724703 | MS.gene059527:CDS |
GCATTCAAGAAAAGGAAGAA+AGG | 0.559136 | 4.4:-27725137 | MS.gene059527:CDS |
ATATTAGTCACCATTGGTGG+TGG | 0.561778 | 4.4:+27724693 | None:intergenic |
CCAATATTAGTCACCATTGG+TGG | 0.566294 | 4.4:+27724690 | None:intergenic |
AAGATTGAAGAAGATTCTCA+AGG | 0.572220 | 4.4:-27724660 | MS.gene059527:CDS |
CCACACCATGACTAGAAAGA+AGG | 0.577852 | 4.4:-27725201 | None:intergenic |
ACTCCAATATTAGTCACCAT+TGG | 0.580691 | 4.4:+27724687 | None:intergenic |
GATGGCCAAACCTCTGGTTG+AGG | 0.583372 | 4.4:+27725038 | None:intergenic |
TCCTTATGATCCTCAACCAG+AGG | 0.603338 | 4.4:-27725048 | MS.gene059527:CDS |
TGTTGACAAACATCTCCCAA+AGG | 0.607464 | 4.4:+27724564 | None:intergenic |
AACCAACGACTCTTCAAGGA+AGG | 0.615674 | 4.4:-27725162 | MS.gene059527:CDS |
ATGTTGACCAAGAAATCTCA+AGG | 0.620305 | 4.4:-27724732 | MS.gene059527:CDS |
AGATTGAAGAAGATTCTCAA+GGG | 0.621484 | 4.4:-27724659 | MS.gene059527:CDS |
TTGATTTAAATGATATGGCA+TGG | 0.624099 | 4.4:-27724797 | MS.gene059527:CDS |
CACAAGCATCAATTCCACAA+AGG | 0.628500 | 4.4:+27725084 | None:intergenic |
AAGAGCAATTGACAAAACAA+AGG | 0.629535 | 4.4:-27724902 | MS.gene059527:CDS |
TTGTTTATGAATTTGATGGG+TGG | 0.633840 | 4.4:-27724612 | MS.gene059527:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATTTGTTTATGAATTTGA+TGG | - | chr4.4:27725108-27725127 | MS.gene059527:CDS | 20.0% |
!! | CATTTGTTTATGAATTTGAT+GGG | - | chr4.4:27725109-27725128 | MS.gene059527:CDS | 20.0% |
!!! | TATGGTTGATTTAAATGATA+TGG | - | chr4.4:27724922-27724941 | MS.gene059527:CDS | 20.0% |
! | AAGGAAAGATAATAGAGAAA+AGG | - | chr4.4:27724841-27724860 | MS.gene059527:CDS | 25.0% |
! | ACTTATGGACAATATAAGTA+TGG | - | chr4.4:27724904-27724923 | MS.gene059527:CDS | 25.0% |
! | ACTTGAAAGAGATTAATAGA+AGG | - | chr4.4:27724963-27724982 | MS.gene059527:CDS | 25.0% |
! | CTTGAAAGAGATTAATAGAA+GGG | - | chr4.4:27724964-27724983 | MS.gene059527:CDS | 25.0% |
! | TTGATTTAAATGATATGGCA+TGG | - | chr4.4:27724927-27724946 | MS.gene059527:CDS | 25.0% |
!!! | TTTGTCAACAAAATGGATTT+TGG | - | chr4.4:27725173-27725192 | MS.gene059527:CDS | 25.0% |
AAGAGCAATTGACAAAACAA+AGG | - | chr4.4:27724822-27724841 | MS.gene059527:CDS | 30.0% | |
AAGATTGAAGAAGATTCTCA+AGG | - | chr4.4:27725064-27725083 | MS.gene059527:CDS | 30.0% | |
AATTTGACCTTGAGATTTCT+TGG | + | chr4.4:27725002-27725021 | None:intergenic | 30.0% | |
AGATTGAAGAAGATTCTCAA+GGG | - | chr4.4:27725065-27725084 | MS.gene059527:CDS | 30.0% | |
ATCTCAAGGTCAAATTCAAA+TGG | - | chr4.4:27725006-27725025 | MS.gene059527:CDS | 30.0% | |
ATTGGAACAAAGCAAAAAGA+TGG | - | chr4.4:27724757-27724776 | MS.gene059527:CDS | 30.0% | |
GAAGAAAGGTCTAATGAAAA+AGG | - | chr4.4:27724601-27724620 | MS.gene059527:CDS | 30.0% | |
TTGAGAATCTTCTTCAATCT+TGG | + | chr4.4:27725065-27725084 | None:intergenic | 30.0% | |
TTGTTTATGAATTTGATGGG+TGG | - | chr4.4:27725112-27725131 | MS.gene059527:CDS | 30.0% | |
! | TCTAAGACAAAGAATCCAAA+AGG | - | chr4.4:27724796-27724815 | MS.gene059527:CDS | 30.0% |
!! | TTTTTGCTTTGTTCCAATTC+AGG | + | chr4.4:27724755-27724774 | None:intergenic | 30.0% |
ACAAGCATCAATTCCACAAA+GGG | + | chr4.4:27724642-27724661 | None:intergenic | 35.0% | |
ACTCCAATATTAGTCACCAT+TGG | + | chr4.4:27725040-27725059 | None:intergenic | 35.0% | |
ATGTTGACCAAGAAATCTCA+AGG | - | chr4.4:27724992-27725011 | MS.gene059527:CDS | 35.0% | |
ATGTTTCAATGTCTTAGTGC+AGG | - | chr4.4:27724878-27724897 | MS.gene059527:CDS | 35.0% | |
GCATTCAAGAAAAGGAAGAA+AGG | - | chr4.4:27724587-27724606 | MS.gene059527:CDS | 35.0% | |
GGAGATGTTTGTCAACAAAA+TGG | - | chr4.4:27725166-27725185 | MS.gene059527:CDS | 35.0% | |
GGGAATGACAAAATTCCTTT+GGG | - | chr4.4:27725145-27725164 | MS.gene059527:CDS | 35.0% | |
GTTCAGAAAAATGCCTGAAT+TGG | - | chr4.4:27724739-27724758 | MS.gene059527:CDS | 35.0% | |
TCTTAGTGCAGGTAAACTTA+TGG | - | chr4.4:27724889-27724908 | MS.gene059527:CDS | 35.0% | |
TGGGAATGACAAAATTCCTT+TGG | - | chr4.4:27725144-27725163 | MS.gene059527:CDS | 35.0% | |
! | TTTATGAATTTGATGGGTGG+TGG | - | chr4.4:27725115-27725134 | MS.gene059527:CDS | 35.0% |
ATATTAGTCACCATTGGTGG+TGG | + | chr4.4:27725034-27725053 | None:intergenic | 40.0% | |
ATCTCAATTGGGAGTCCAAA+GGG | - | chr4.4:27724706-27724725 | MS.gene059527:CDS | 40.0% | |
CACAAGCATCAATTCCACAA+AGG | + | chr4.4:27724643-27724662 | None:intergenic | 40.0% | |
CCAATATTAGTCACCATTGG+TGG | + | chr4.4:27725037-27725056 | None:intergenic | 40.0% | |
CCACCAATGGTGACTAATAT+TGG | - | chr4.4:27725034-27725053 | MS.gene059527:CDS | 40.0% | |
TCATAACCAACGACTCTTCA+AGG | - | chr4.4:27724558-27724577 | MS.gene059527:CDS | 40.0% | |
TGTTGACAAACATCTCCCAA+AGG | + | chr4.4:27725163-27725182 | None:intergenic | 40.0% | |
! | TCAATTGCTCTTTCGCCTTT+TGG | + | chr4.4:27724814-27724833 | None:intergenic | 40.0% |
!! | TGAACTTGTTAAGCACCCTT+TGG | + | chr4.4:27724724-27724743 | None:intergenic | 40.0% |
AACCAACGACTCTTCAAGGA+AGG | - | chr4.4:27724562-27724581 | MS.gene059527:CDS | 45.0% | |
AATTGAGATGGCCAAACCTC+TGG | + | chr4.4:27724695-27724714 | None:intergenic | 45.0% | |
ACCTCTGGTTGAGGATCATA+AGG | + | chr4.4:27724680-27724699 | None:intergenic | 45.0% | |
AGAGGTTTGGCCATCTCAAT+TGG | - | chr4.4:27724694-27724713 | MS.gene059527:CDS | 45.0% | |
AGTGAACTTAGCACCCTTTG+TGG | - | chr4.4:27724626-27724645 | MS.gene059527:CDS | 45.0% | |
ATGATCCTCAACCAGAGGTT+TGG | - | chr4.4:27724681-27724700 | MS.gene059527:CDS | 45.0% | |
CATCTCAATTGGGAGTCCAA+AGG | - | chr4.4:27724705-27724724 | MS.gene059527:CDS | 45.0% | |
CTTTGGACTCCCAATTGAGA+TGG | + | chr4.4:27724707-27724726 | None:intergenic | 45.0% | |
GAGGTTTGGCCATCTCAATT+GGG | - | chr4.4:27724695-27724714 | MS.gene059527:CDS | 45.0% | |
GGAAGGCAGCATTCAAGAAA+AGG | - | chr4.4:27724579-27724598 | MS.gene059527:CDS | 45.0% | |
TCCTTATGATCCTCAACCAG+AGG | - | chr4.4:27724676-27724695 | MS.gene059527:CDS | 45.0% | |
! | ATGAATTTGATGGGTGGTGG+TGG | - | chr4.4:27725118-27725137 | MS.gene059527:CDS | 45.0% |
TCAAATGGCACCACCACCAA+TGG | - | chr4.4:27725021-27725040 | MS.gene059527:CDS | 50.0% | |
TGCCTTCCTTGAAGAGTCGT+TGG | + | chr4.4:27724567-27724586 | None:intergenic | 50.0% | |
!! | AATTTGATGGGTGGTGGTGG+TGG | - | chr4.4:27725121-27725140 | MS.gene059527:CDS | 50.0% |
GATGGCCAAACCTCTGGTTG+AGG | + | chr4.4:27724689-27724708 | None:intergenic | 55.0% | |
!! | TGATGGGTGGTGGTGGTGGT+GGG | - | chr4.4:27725125-27725144 | MS.gene059527:CDS | 60.0% |
!! | TTGATGGGTGGTGGTGGTGG+TGG | - | chr4.4:27725124-27725143 | MS.gene059527:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 27724530 | 27725216 | 27724530 | ID=MS.gene059527 |
chr4.4 | mRNA | 27724530 | 27725216 | 27724530 | ID=MS.gene059527.t1;Parent=MS.gene059527 |
chr4.4 | exon | 27724530 | 27725216 | 27724530 | ID=MS.gene059527.t1.exon1;Parent=MS.gene059527.t1 |
chr4.4 | CDS | 27724530 | 27725216 | 27724530 | ID=cds.MS.gene059527.t1;Parent=MS.gene059527.t1 |
Gene Sequence |
Protein sequence |