Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059733.t1 | XP_024634855.1 | 53.4 | 762 | 17 | 3 | 12 | 435 | 29 | 790 | 1.80E-191 | 678.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059733.t1 | Q5UBY2 | 24.0 | 337 | 200 | 6 | 122 | 408 | 264 | 594 | 1.3e-20 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059733.t1 | A0A151R3J6 | 42.7 | 627 | 126 | 2 | 12 | 405 | 29 | 655 | 2.7e-125 | 458.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene059733.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059733.t1 | MTR_4g102720 | 50.781 | 128 | 30 | 1 | 12 | 139 | 29 | 123 | 6.28e-35 | 129 |
| MS.gene059733.t1 | MTR_0402s0040 | 35.437 | 206 | 119 | 6 | 13 | 205 | 49 | 253 | 4.88e-30 | 122 |
| MS.gene059733.t1 | MTR_7g061980 | 52.874 | 87 | 40 | 1 | 13 | 98 | 33 | 119 | 7.84e-25 | 99.0 |
| MS.gene059733.t1 | MTR_7g074790 | 43.846 | 130 | 54 | 2 | 11 | 139 | 31 | 142 | 3.05e-24 | 100 |
| MS.gene059733.t1 | MTR_5g039760 | 36.641 | 131 | 57 | 3 | 11 | 139 | 31 | 137 | 1.02e-19 | 87.0 |
| MS.gene059733.t1 | MTR_2g099430 | 45.977 | 87 | 46 | 1 | 13 | 98 | 26 | 112 | 3.99e-17 | 77.4 |
| MS.gene059733.t1 | MTR_5g015480 | 45.098 | 102 | 53 | 2 | 12 | 110 | 78 | 179 | 3.94e-15 | 75.5 |
| MS.gene059733.t1 | MTR_2g070590 | 38.554 | 83 | 48 | 2 | 12 | 91 | 39 | 121 | 9.15e-12 | 62.4 |
| MS.gene059733.t1 | MTR_7g113010 | 41.237 | 97 | 54 | 2 | 20 | 113 | 473 | 569 | 5.23e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059733.t1 | AT4G15090 | 25.000 | 312 | 163 | 7 | 141 | 405 | 398 | 685 | 1.75e-22 | 100 |
| MS.gene059733.t1 | AT4G15090 | 25.000 | 312 | 163 | 7 | 141 | 405 | 398 | 685 | 1.75e-22 | 100 |
| MS.gene059733.t1 | AT4G15090 | 25.000 | 312 | 163 | 7 | 141 | 405 | 398 | 685 | 1.75e-22 | 100 |
| MS.gene059733.t1 | AT4G15090 | 25.000 | 312 | 163 | 7 | 141 | 405 | 398 | 685 | 1.75e-22 | 100 |
| MS.gene059733.t1 | AT4G15090 | 25.000 | 312 | 163 | 7 | 141 | 405 | 398 | 685 | 1.75e-22 | 100 |
| MS.gene059733.t1 | AT4G38170 | 26.117 | 291 | 158 | 8 | 143 | 389 | 189 | 466 | 2.04e-22 | 100 |
| MS.gene059733.t1 | AT3G22170 | 25.954 | 262 | 148 | 4 | 141 | 362 | 407 | 662 | 3.18e-21 | 97.1 |
| MS.gene059733.t1 | AT3G22170 | 25.954 | 262 | 148 | 4 | 141 | 362 | 407 | 662 | 3.18e-21 | 97.1 |
| MS.gene059733.t1 | AT4G38180 | 26.471 | 238 | 128 | 4 | 142 | 340 | 423 | 652 | 9.07e-21 | 95.9 |
| MS.gene059733.t1 | AT4G38180 | 38.053 | 113 | 66 | 2 | 27 | 135 | 111 | 223 | 8.42e-15 | 77.4 |
| MS.gene059733.t1 | AT4G19990 | 25.600 | 250 | 134 | 5 | 142 | 347 | 347 | 588 | 1.75e-18 | 88.6 |
| MS.gene059733.t1 | AT4G19990 | 25.600 | 250 | 134 | 5 | 142 | 347 | 347 | 588 | 1.75e-18 | 88.6 |
| MS.gene059733.t1 | AT4G19990 | 25.600 | 250 | 134 | 5 | 142 | 347 | 347 | 588 | 2.11e-18 | 88.6 |
| MS.gene059733.t1 | AT4G19990 | 25.600 | 250 | 134 | 5 | 142 | 347 | 347 | 588 | 2.11e-18 | 88.6 |
| MS.gene059733.t1 | AT4G19990 | 25.600 | 250 | 134 | 5 | 142 | 347 | 361 | 602 | 2.65e-18 | 88.2 |
| MS.gene059733.t1 | AT4G19990 | 25.600 | 250 | 134 | 5 | 142 | 347 | 347 | 588 | 2.86e-18 | 87.8 |
| MS.gene059733.t1 | AT4G19990 | 25.600 | 250 | 134 | 5 | 142 | 347 | 290 | 531 | 2.86e-18 | 87.8 |
| MS.gene059733.t1 | AT2G27110 | 25.197 | 254 | 150 | 5 | 142 | 358 | 370 | 620 | 1.01e-16 | 83.2 |
| MS.gene059733.t1 | AT2G27110 | 25.197 | 254 | 150 | 5 | 142 | 358 | 370 | 620 | 1.01e-16 | 83.2 |
| MS.gene059733.t1 | AT2G27110 | 25.197 | 254 | 150 | 5 | 142 | 358 | 225 | 475 | 1.83e-16 | 82.4 |
Find 72 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCACCTCTTTAAAATATA+AGG | 0.176322 | 2.4:-20463075 | None:intergenic |
| CAGGCCTCCATTCAAGTTTC+TGG | 0.199038 | 2.4:-20464005 | None:intergenic |
| TCTGAACACCATACTTTATA+AGG | 0.212221 | 2.4:-20462621 | None:intergenic |
| TTGAAGATGCTTGGGAGTTC+TGG | 0.234863 | 2.4:+20461580 | None:intergenic |
| TTAAGAAACTCGACAGCTTC+TGG | 0.244592 | 2.4:-20463234 | None:intergenic |
| CATCTCTTTAATATTGTTAG+AGG | 0.252679 | 2.4:-20463334 | None:intergenic |
| GACAACATATGAGTTGTTTC+TGG | 0.253501 | 2.4:-20461859 | None:intergenic |
| AAATTTGTCCCCGCTTTATT+AGG | 0.254015 | 2.4:+20463187 | MS.gene059733:CDS |
| CCTTGCTTCACAATTTGTTT+TGG | 0.257309 | 2.4:-20461761 | None:intergenic |
| TATTGCCAAGAAAAGGAATA+TGG | 0.289005 | 2.4:+20462918 | MS.gene059733:CDS |
| ATCTCCAGCACAATGTTATA+AGG | 0.298579 | 2.4:+20463164 | MS.gene059733:CDS |
| CTTAAAAGTCTTCATTCATA+TGG | 0.313141 | 2.4:+20463032 | MS.gene059733:CDS |
| CGGTGGTAAAGGTTGGATTC+GGG | 0.319771 | 2.4:+20461611 | MS.gene059733:CDS |
| ATGAAGAAGACTTTGACATT+AGG | 0.337357 | 2.4:+20462700 | MS.gene059733:CDS |
| ATGGTTCAGTTTCTTCTTGT+AGG | 0.346032 | 2.4:+20461665 | MS.gene059733:CDS |
| TGTACAGTATAAAGGAGAAA+TGG | 0.347671 | 2.4:+20462665 | MS.gene059733:CDS |
| ACATCCCTCCTTATAAAGTA+TGG | 0.358569 | 2.4:+20462613 | MS.gene059733:CDS |
| TGTCGTAAATTTGAGAGCTT+TGG | 0.360045 | 2.4:+20462991 | MS.gene059733:CDS |
| TAAGGAAGTTGCTGATGAAT+TGG | 0.363801 | 2.4:+20463254 | MS.gene059733:CDS |
| GATGGAACATCTAGTCAATT+TGG | 0.363982 | 2.4:+20463863 | MS.gene059733:CDS |
| TGAAGAAGACTTTGACATTA+GGG | 0.366463 | 2.4:+20462701 | MS.gene059733:CDS |
| ATGGCAAGTGACCTTCGATT+TGG | 0.384310 | 2.4:+20462945 | MS.gene059733:CDS |
| GCAAAGAATGTACAGTATAA+AGG | 0.392434 | 2.4:+20462657 | MS.gene059733:CDS |
| TCGGTAGCTTTGAAGATGCT+TGG | 0.398691 | 2.4:+20461571 | None:intergenic |
| CGGTAGCTTTGAAGATGCTT+GGG | 0.400248 | 2.4:+20461572 | None:intergenic |
| AGAAGCTGTCGAGTTTCTTA+AGG | 0.400377 | 2.4:+20463236 | MS.gene059733:CDS |
| TATGTTGTCTTCTCAACAAA+AGG | 0.416094 | 2.4:+20461873 | MS.gene059733:CDS |
| ACGGTGGTAAAGGTTGGATT+CGG | 0.423475 | 2.4:+20461610 | MS.gene059733:CDS |
| AGTAGGAGGCAGAACTAACT+TGG | 0.425960 | 2.4:+20461981 | MS.gene059733:CDS |
| GTACAGTATAAAGGAGAAAT+GGG | 0.433816 | 2.4:+20462666 | MS.gene059733:CDS |
| TAAAGGTTGGATTCGGGGTG+AGG | 0.441901 | 2.4:+20461617 | MS.gene059733:CDS |
| CTTATGTTATTGCCAAGAAA+AGG | 0.457771 | 2.4:+20462911 | MS.gene059733:CDS |
| TGGAAAACTTACGGTGGTAA+AGG | 0.464253 | 2.4:+20461600 | MS.gene059733:CDS |
| AGTAGAGCTTCACAAACTAT+TGG | 0.464878 | 2.4:+20463111 | MS.gene059733:CDS |
| GATTTAATGAGTAAAGAAGT+AGG | 0.465399 | 2.4:+20461964 | MS.gene059733:CDS |
| AGGTTTGTTTGCTGCAAAGA+AGG | 0.468354 | 2.4:+20461685 | MS.gene059733:CDS |
| ACAAATTGTGAAGCAAGGTT+AGG | 0.474466 | 2.4:+20461766 | MS.gene059733:CDS |
| ATTTCCTTATAACATTGTGC+TGG | 0.482058 | 2.4:-20463168 | None:intergenic |
| TGGGAGTTCTGGAAAACTTA+CGG | 0.491418 | 2.4:+20461591 | MS.gene059733:CDS |
| GAATGTGGATGGAAAATTGA+TGG | 0.494783 | 2.4:+20461795 | MS.gene059733:CDS |
| ATGAACAATTTGAAGATGGT+TGG | 0.497546 | 2.4:+20462590 | MS.gene059733:CDS |
| AAACTTACGGTGGTAAAGGT+TGG | 0.499547 | 2.4:+20461604 | MS.gene059733:CDS |
| CTCTTTAAAATATAAGGCTC+AGG | 0.500537 | 2.4:-20463069 | None:intergenic |
| GATGATGAACAATTTGAAGA+TGG | 0.517251 | 2.4:+20462586 | MS.gene059733:intron |
| ATTGCCAAGAAAAGGAATAT+GGG | 0.518068 | 2.4:+20462919 | MS.gene059733:CDS |
| AGAAAAGGAATATGGGAGAA+TGG | 0.522592 | 2.4:+20462926 | MS.gene059733:CDS |
| TAGTCATGTGGTAGAAGACT+TGG | 0.525523 | 2.4:+20463137 | MS.gene059733:CDS |
| ATAAGTAGTGAACAAGTGAA+TGG | 0.530525 | 2.4:+20463309 | MS.gene059733:CDS |
| CGATTTCCTTTGTTGTACAC+CGG | 0.540939 | 2.4:-20461938 | None:intergenic |
| TGTGACGATCCTAATAAAGC+GGG | 0.542482 | 2.4:-20463196 | None:intergenic |
| TTAGGACTTAAGAATGTGGA+TGG | 0.548535 | 2.4:+20461784 | MS.gene059733:CDS |
| GATGGTACCAGAAACTTGAA+TGG | 0.549108 | 2.4:+20463998 | MS.gene059733:CDS |
| AAGATGTTGTAGAAGAAAAG+CGG | 0.551004 | 2.4:+20462818 | MS.gene059733:CDS |
| GCAAATGTAACTCGTGGTTG+TGG | 0.569974 | 2.4:-20461837 | None:intergenic |
| TTATAGGAGCAACTTGATGA+TGG | 0.570385 | 2.4:+20463980 | MS.gene059733:intron |
| GAACACCATACTTTATAAGG+AGG | 0.576736 | 2.4:-20462618 | None:intergenic |
| GGTGGTAAAGGTTGGATTCG+GGG | 0.585685 | 2.4:+20461612 | MS.gene059733:CDS |
| TTTATTAGGATCGTCACAGA+AGG | 0.594701 | 2.4:+20463201 | MS.gene059733:CDS |
| CCAAAACAAATTGTGAAGCA+AGG | 0.597346 | 2.4:+20461761 | MS.gene059733:CDS |
| AACACCATACTTTATAAGGA+GGG | 0.603443 | 2.4:-20462617 | None:intergenic |
| AACTATTGGTGTTAGTCATG+TGG | 0.613627 | 2.4:+20463125 | MS.gene059733:CDS |
| CTGTGACGATCCTAATAAAG+CGG | 0.623114 | 2.4:-20463197 | None:intergenic |
| GTAGGAGGCAGAACTAACTT+GGG | 0.636519 | 2.4:+20461982 | MS.gene059733:CDS |
| ATTGAACTAGCTGATAGTGC+CGG | 0.644559 | 2.4:+20461919 | MS.gene059733:CDS |
| TTAATGAGTAAAGAAGTAGG+AGG | 0.644625 | 2.4:+20461967 | MS.gene059733:CDS |
| ATAGTGCCGGTGTACAACAA+AGG | 0.660446 | 2.4:+20461932 | MS.gene059733:CDS |
| TTTCTGGCAAATGTAACTCG+TGG | 0.662245 | 2.4:-20461843 | None:intergenic |
| GGTACCAGAAACTTGAATGG+AGG | 0.672855 | 2.4:+20464001 | MS.gene059733:CDS |
| AGCATGCTTTGTGAAAAGCA+TGG | 0.679180 | 2.4:+20462867 | MS.gene059733:CDS |
| AAGGTTAGGACTTAAGAATG+TGG | 0.679784 | 2.4:+20461780 | MS.gene059733:CDS |
| GTGACGATCCTAATAAAGCG+GGG | 0.705450 | 2.4:-20463195 | None:intergenic |
| GAGTTCTGGAAAACTTACGG+TGG | 0.762461 | 2.4:+20461594 | MS.gene059733:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTAATAATACCAT+AGG | - | chr2.4:20463508-20463527 | None:intergenic | 10.0% |
| !!! | TATTAAAAATTTTATGAGTA+AGG | + | chr2.4:20462762-20462781 | MS.gene059733:CDS | 10.0% |
| !!! | AATTATTTTGGTTTTTATGT+AGG | + | chr2.4:20463835-20463854 | MS.gene059733:intron | 15.0% |
| !!! | ACTTGCATTTTTTAAATTAT+AGG | + | chr2.4:20463964-20463983 | MS.gene059733:intron | 15.0% |
| !!! | ATTATTTTGGTTTTTATGTA+GGG | + | chr2.4:20463836-20463855 | MS.gene059733:intron | 15.0% |
| !!! | GTTTAGTGTTTAAATTATTT+TGG | + | chr2.4:20463823-20463842 | MS.gene059733:intron | 15.0% |
| !! | AAAAAAAAGAGAAAGAAGTT+TGG | + | chr2.4:20462038-20462057 | MS.gene059733:intron | 20.0% |
| !! | ACTTAGGAAATTTAATGAAA+GGG | + | chr2.4:20462515-20462534 | MS.gene059733:intron | 20.0% |
| !! | CACAAAAAAAAGGAATATAA+AGG | - | chr2.4:20463568-20463587 | None:intergenic | 20.0% |
| !! | TTAAACACTAAACATAGTTA+AGG | - | chr2.4:20463816-20463835 | None:intergenic | 20.0% |
| !!! | TTGATTGATTACAGTTATTT+TGG | + | chr2.4:20462192-20462211 | MS.gene059733:intron | 20.0% |
| ! | ACATTGTAAATCACTAATGT+TGG | - | chr2.4:20463688-20463707 | None:intergenic | 25.0% |
| ! | AGATTATACACACAGAAAAA+AGG | + | chr2.4:20461642-20461661 | MS.gene059733:CDS | 25.0% |
| ! | CAAAATGGAATTAAACACTT+AGG | + | chr2.4:20462499-20462518 | MS.gene059733:intron | 25.0% |
| ! | CACTTAGGAAATTTAATGAA+AGG | + | chr2.4:20462514-20462533 | MS.gene059733:intron | 25.0% |
| ! | CATCTCTTTAATATTGTTAG+AGG | - | chr2.4:20463337-20463356 | None:intergenic | 25.0% |
| ! | CTTAAAAGTCTTCATTCATA+TGG | + | chr2.4:20463032-20463051 | MS.gene059733:CDS | 25.0% |
| ! | CTTAGGAAATTTAATGAAAG+GGG | + | chr2.4:20462516-20462535 | MS.gene059733:intron | 25.0% |
| ! | GATTTAATGAGTAAAGAAGT+AGG | + | chr2.4:20461964-20461983 | MS.gene059733:CDS | 25.0% |
| ! | TATGCATTATTAAGCCATAT+AGG | - | chr2.4:20463744-20463763 | None:intergenic | 25.0% |
| ! | TGTTCTTCTACACAAAAAAA+AGG | - | chr2.4:20463578-20463597 | None:intergenic | 25.0% |
| !! | AAATTTTATGAGTAAGGACT+TGG | + | chr2.4:20462768-20462787 | MS.gene059733:CDS | 25.0% |
| !!! | TAGTTTTACTAGCTTATTGA+TGG | + | chr2.4:20463892-20463911 | MS.gene059733:CDS | 25.0% |
| !!! | TTTTTTGTGTAGAAGAACAA+AGG | + | chr2.4:20463579-20463598 | MS.gene059733:intron | 25.0% |
| AACACCATACTTTATAAGGA+GGG | - | chr2.4:20462620-20462639 | None:intergenic | 30.0% | |
| AAGATGTTGTAGAAGAAAAG+CGG | + | chr2.4:20462818-20462837 | MS.gene059733:CDS | 30.0% | |
| AGGGTTCCAAAAATATAAAG+AGG | + | chr2.4:20463607-20463626 | MS.gene059733:intron | 30.0% | |
| ATAAGTAGTGAACAAGTGAA+TGG | + | chr2.4:20463309-20463328 | MS.gene059733:CDS | 30.0% | |
| ATGAACAATTTGAAGATGGT+TGG | + | chr2.4:20462590-20462609 | MS.gene059733:CDS | 30.0% | |
| ATGAAGAAGACTTTGACATT+AGG | + | chr2.4:20462700-20462719 | MS.gene059733:CDS | 30.0% | |
| ATGGTGTTCAGAAAAATGAT+TGG | + | chr2.4:20462632-20462651 | MS.gene059733:CDS | 30.0% | |
| ATTGCCAAGAAAAGGAATAT+GGG | + | chr2.4:20462919-20462938 | MS.gene059733:CDS | 30.0% | |
| ATTTCCTTATAACATTGTGC+TGG | - | chr2.4:20463171-20463190 | None:intergenic | 30.0% | |
| CTTATGTTATTGCCAAGAAA+AGG | + | chr2.4:20462911-20462930 | MS.gene059733:CDS | 30.0% | |
| GATGATGAACAATTTGAAGA+TGG | + | chr2.4:20462586-20462605 | MS.gene059733:intron | 30.0% | |
| GCAAAGAATGTACAGTATAA+AGG | + | chr2.4:20462657-20462676 | MS.gene059733:CDS | 30.0% | |
| GTACAGTATAAAGGAGAAAT+GGG | + | chr2.4:20462666-20462685 | MS.gene059733:CDS | 30.0% | |
| GTTCCAAAAATATAAAGAGG+CGG | + | chr2.4:20463610-20463629 | MS.gene059733:intron | 30.0% | |
| TACTGATCAAGACAAATCAA+TGG | + | chr2.4:20462413-20462432 | MS.gene059733:intron | 30.0% | |
| TATACACACAGAAAAAAGGA+TGG | + | chr2.4:20461646-20461665 | MS.gene059733:CDS | 30.0% | |
| TATGTTGTCTTCTCAACAAA+AGG | + | chr2.4:20461873-20461892 | MS.gene059733:CDS | 30.0% | |
| TATTGCCAAGAAAAGGAATA+TGG | + | chr2.4:20462918-20462937 | MS.gene059733:CDS | 30.0% | |
| TCTGAACACCATACTTTATA+AGG | - | chr2.4:20462624-20462643 | None:intergenic | 30.0% | |
| TGAAGAAGACTTTGACATTA+GGG | + | chr2.4:20462701-20462720 | MS.gene059733:CDS | 30.0% | |
| TGTACAGTATAAAGGAGAAA+TGG | + | chr2.4:20462665-20462684 | MS.gene059733:CDS | 30.0% | |
| TGTTATTAGCTAACCATAGA+TGG | - | chr2.4:20463775-20463794 | None:intergenic | 30.0% | |
| TTAATGAGTAAAGAAGTAGG+AGG | + | chr2.4:20461967-20461986 | MS.gene059733:CDS | 30.0% | |
| TTCACAAATTCAAGAACCTA+TGG | + | chr2.4:20463489-20463508 | MS.gene059733:intron | 30.0% | |
| TTCCAAAAATATAAAGAGGC+GGG | + | chr2.4:20463611-20463630 | MS.gene059733:intron | 30.0% | |
| ! | GACTTTAAGAAATGCATGTA+TGG | + | chr2.4:20462556-20462575 | MS.gene059733:intron | 30.0% |
| ! | TGTATTCTTTTCCAAATCGA+AGG | - | chr2.4:20462959-20462978 | None:intergenic | 30.0% |
| !! | AGCCTTATATTTTAAAGAGG+TGG | + | chr2.4:20463073-20463092 | MS.gene059733:CDS | 30.0% |
| !! | CTCTTTAAAATATAAGGCTC+AGG | - | chr2.4:20463072-20463091 | None:intergenic | 30.0% |
| !! | CTGAGCCTTATATTTTAAAG+AGG | + | chr2.4:20463070-20463089 | MS.gene059733:CDS | 30.0% |
| !! | GTCCACCTCTTTAAAATATA+AGG | - | chr2.4:20463078-20463097 | None:intergenic | 30.0% |
| AAGGTTAGGACTTAAGAATG+TGG | + | chr2.4:20461780-20461799 | MS.gene059733:CDS | 35.0% | |
| ACAAATTGTGAAGCAAGGTT+AGG | + | chr2.4:20461766-20461785 | MS.gene059733:CDS | 35.0% | |
| ACATAAACCATGATAAGCTC+CGG | - | chr2.4:20462464-20462483 | None:intergenic | 35.0% | |
| ACATCCCTCCTTATAAAGTA+TGG | + | chr2.4:20462613-20462632 | MS.gene059733:CDS | 35.0% | |
| AGAAAAGGAATATGGGAGAA+TGG | + | chr2.4:20462926-20462945 | MS.gene059733:CDS | 35.0% | |
| AGAAAGAAGTTTGGTACAAG+GGG | + | chr2.4:20462047-20462066 | MS.gene059733:intron | 35.0% | |
| AGAGAAAGAAGTTTGGTACA+AGG | + | chr2.4:20462045-20462064 | MS.gene059733:intron | 35.0% | |
| AGTAGAGCTTCACAAACTAT+TGG | + | chr2.4:20463111-20463130 | MS.gene059733:CDS | 35.0% | |
| ATAGTGCAACACAAGTAAAG+GGG | + | chr2.4:20463370-20463389 | MS.gene059733:intron | 35.0% | |
| ATCTCCAGCACAATGTTATA+AGG | + | chr2.4:20463164-20463183 | MS.gene059733:CDS | 35.0% | |
| ATGGTTCAGTTTCTTCTTGT+AGG | + | chr2.4:20461665-20461684 | MS.gene059733:CDS | 35.0% | |
| CAATATCTAGCTGATAAGCA+TGG | - | chr2.4:20462131-20462150 | None:intergenic | 35.0% | |
| CAATTACAAGTGCACCTATA+TGG | + | chr2.4:20463727-20463746 | MS.gene059733:intron | 35.0% | |
| CATATAGGTGCACTTGTAAT+TGG | - | chr2.4:20463729-20463748 | None:intergenic | 35.0% | |
| CCAAAACAAATTGTGAAGCA+AGG | + | chr2.4:20461761-20461780 | MS.gene059733:CDS | 35.0% | |
| CTTATCATGGTTTATGTACG+TGG | + | chr2.4:20462467-20462486 | MS.gene059733:intron | 35.0% | |
| GAACACCATACTTTATAAGG+AGG | - | chr2.4:20462621-20462640 | None:intergenic | 35.0% | |
| GAATGTGGATGGAAAATTGA+TGG | + | chr2.4:20461795-20461814 | MS.gene059733:CDS | 35.0% | |
| GAGAAAGAAGTTTGGTACAA+GGG | + | chr2.4:20462046-20462065 | MS.gene059733:intron | 35.0% | |
| GATAGTGCAACACAAGTAAA+GGG | + | chr2.4:20463369-20463388 | MS.gene059733:intron | 35.0% | |
| GATGGAACATCTAGTCAATT+TGG | + | chr2.4:20463863-20463882 | MS.gene059733:CDS | 35.0% | |
| GCATACAATCAAACCATCTA+TGG | + | chr2.4:20463759-20463778 | MS.gene059733:intron | 35.0% | |
| TAAGGAAGTTGCTGATGAAT+TGG | + | chr2.4:20463254-20463273 | MS.gene059733:CDS | 35.0% | |
| TAGAAGAACAAAGGTAAGCA+GGG | + | chr2.4:20463588-20463607 | MS.gene059733:intron | 35.0% | |
| TGATAAGCATGGTAGAAAGT+TGG | - | chr2.4:20462120-20462139 | None:intergenic | 35.0% | |
| TGTCGTAAATTTGAGAGCTT+TGG | + | chr2.4:20462991-20463010 | MS.gene059733:CDS | 35.0% | |
| TTAGGACTTAAGAATGTGGA+TGG | + | chr2.4:20461784-20461803 | MS.gene059733:CDS | 35.0% | |
| TTATAGGAGCAACTTGATGA+TGG | + | chr2.4:20463980-20463999 | MS.gene059733:intron | 35.0% | |
| TTCAAAACGTTGGAAAGGTT+GGG | + | chr2.4:20463420-20463439 | MS.gene059733:intron | 35.0% | |
| TTCTTGAATTTGTGAAGCAG+TGG | - | chr2.4:20463485-20463504 | None:intergenic | 35.0% | |
| TTTATTAGGATCGTCACAGA+AGG | + | chr2.4:20463201-20463220 | MS.gene059733:CDS | 35.0% | |
| ! | AAATTTGTCCCCGCTTTATT+AGG | + | chr2.4:20463187-20463206 | MS.gene059733:CDS | 35.0% |
| ! | ATCCCGCCTCTTTATATTTT+TGG | - | chr2.4:20463616-20463635 | None:intergenic | 35.0% |
| ! | GACAACATATGAGTTGTTTC+TGG | - | chr2.4:20461862-20461881 | None:intergenic | 35.0% |
| ! | TGATAGTGCAACACAAGTAA+AGG | + | chr2.4:20463368-20463387 | MS.gene059733:intron | 35.0% |
| ! | TTCTCCCATATTCCTTTTCT+TGG | - | chr2.4:20462926-20462945 | None:intergenic | 35.0% |
| !! | AACTATTGGTGTTAGTCATG+TGG | + | chr2.4:20463125-20463144 | MS.gene059733:CDS | 35.0% |
| !! | CCTTGCTTCACAATTTGTTT+TGG | - | chr2.4:20461764-20461783 | None:intergenic | 35.0% |
| !!! | ATTGATGGTGCATGATTTTG+TGG | + | chr2.4:20461810-20461829 | MS.gene059733:CDS | 35.0% |
| !!! | TTTGTTTTGGTCTCTAGTCT+TGG | - | chr2.4:20461751-20461770 | None:intergenic | 35.0% |
| AAACTTACGGTGGTAAAGGT+TGG | + | chr2.4:20461604-20461623 | MS.gene059733:CDS | 40.0% | |
| AAGAACGAAGAAGGTCCAAA+GGG | + | chr2.4:20463397-20463416 | MS.gene059733:intron | 40.0% | |
| AAGGGTTCAAAACGTTGGAA+AGG | + | chr2.4:20463415-20463434 | MS.gene059733:intron | 40.0% | |
| AGAAGCTGTCGAGTTTCTTA+AGG | + | chr2.4:20463236-20463255 | MS.gene059733:CDS | 40.0% | |
| AGCATGCTTTGTGAAAAGCA+TGG | + | chr2.4:20462867-20462886 | MS.gene059733:CDS | 40.0% | |
| CAAAAATTACAGCTGCTCGA+TGG | - | chr2.4:20462296-20462315 | None:intergenic | 40.0% | |
| CATAAACCATGATAAGCTCC+GGG | - | chr2.4:20462463-20462482 | None:intergenic | 40.0% | |
| CTGTGACGATCCTAATAAAG+CGG | - | chr2.4:20463200-20463219 | None:intergenic | 40.0% | |
| CTTGTAATTGGCGATGCATA+TGG | - | chr2.4:20463717-20463736 | None:intergenic | 40.0% | |
| GATGGTACCAGAAACTTGAA+TGG | + | chr2.4:20463998-20464017 | MS.gene059733:CDS | 40.0% | |
| GTAGAAGAACAAAGGTAAGC+AGG | + | chr2.4:20463587-20463606 | MS.gene059733:intron | 40.0% | |
| GTTCAAAACGTTGGAAAGGT+TGG | + | chr2.4:20463419-20463438 | MS.gene059733:intron | 40.0% | |
| TAAGAACGAAGAAGGTCCAA+AGG | + | chr2.4:20463396-20463415 | MS.gene059733:intron | 40.0% | |
| TAGTCATGTGGTAGAAGACT+TGG | + | chr2.4:20463137-20463156 | MS.gene059733:CDS | 40.0% | |
| TGGAAAACTTACGGTGGTAA+AGG | + | chr2.4:20461600-20461619 | MS.gene059733:CDS | 40.0% | |
| TGTGACGATCCTAATAAAGC+GGG | - | chr2.4:20463199-20463218 | None:intergenic | 40.0% | |
| TTAAGAAACTCGACAGCTTC+TGG | - | chr2.4:20463237-20463256 | None:intergenic | 40.0% | |
| ! | AGGTTTGTTTGCTGCAAAGA+AGG | + | chr2.4:20461685-20461704 | MS.gene059733:CDS | 40.0% |
| ! | ATCAGATCACCACTGTGTTT+TGG | + | chr2.4:20462154-20462173 | MS.gene059733:intron | 40.0% |
| ! | ATTGAACTAGCTGATAGTGC+CGG | + | chr2.4:20461919-20461938 | MS.gene059733:CDS | 40.0% |
| ! | CATCGAGCAGCTGTAATTTT+TGG | + | chr2.4:20462294-20462313 | MS.gene059733:intron | 40.0% |
| ! | CGATTTCCTTTGTTGTACAC+CGG | - | chr2.4:20461941-20461960 | None:intergenic | 40.0% |
| ! | GTTTTATGATCTCGCTTGTC+TGG | - | chr2.4:20461721-20461740 | None:intergenic | 40.0% |
| ! | GTTTTTATGTAGGGAGACGA+TGG | + | chr2.4:20463845-20463864 | MS.gene059733:intron | 40.0% |
| ! | TCAGATCACCACTGTGTTTT+GGG | + | chr2.4:20462155-20462174 | MS.gene059733:intron | 40.0% |
| ! | TTTCTGGCAAATGTAACTCG+TGG | - | chr2.4:20461846-20461865 | None:intergenic | 40.0% |
| !! | TGGGAGTTCTGGAAAACTTA+CGG | + | chr2.4:20461591-20461610 | MS.gene059733:CDS | 40.0% |
| !! | TTCCAACGTTTTGAACCCTT+TGG | - | chr2.4:20463415-20463434 | None:intergenic | 40.0% |
| !!! | AGGGGTTTTAAGAACGAAGA+AGG | + | chr2.4:20463388-20463407 | MS.gene059733:intron | 40.0% |
| AAACTGCTGAGTCATACGAG+TGG | + | chr2.4:20462337-20462356 | MS.gene059733:intron | 45.0% | |
| AAATTACAGCTGCTCGATGG+TGG | - | chr2.4:20462293-20462312 | None:intergenic | 45.0% | |
| AAGAAGTTTGGTACAAGGGG+AGG | + | chr2.4:20462050-20462069 | MS.gene059733:intron | 45.0% | |
| ACGGTGGTAAAGGTTGGATT+CGG | + | chr2.4:20461610-20461629 | MS.gene059733:CDS | 45.0% | |
| ACGTGGCACTTGATGCAAAA+TGG | + | chr2.4:20462484-20462503 | MS.gene059733:intron | 45.0% | |
| AGACCACTAGCAATCATCTC+GGG | + | chr2.4:20462261-20462280 | MS.gene059733:intron | 45.0% | |
| AGGTTGGGTAGAAACGAAAC+TGG | + | chr2.4:20463435-20463454 | MS.gene059733:intron | 45.0% | |
| AGTAGGAGGCAGAACTAACT+TGG | + | chr2.4:20461981-20462000 | MS.gene059733:CDS | 45.0% | |
| ATGGCAAGTGACCTTCGATT+TGG | + | chr2.4:20462945-20462964 | MS.gene059733:CDS | 45.0% | |
| CAGACCACTAGCAATCATCT+CGG | + | chr2.4:20462260-20462279 | MS.gene059733:intron | 45.0% | |
| CTTTGCGCGTTTCTTTCTCT+TGG | - | chr2.4:20463461-20463480 | None:intergenic | 45.0% | |
| GCAAATGTAACTCGTGGTTG+TGG | - | chr2.4:20461840-20461859 | None:intergenic | 45.0% | |
| GGTACCAGAAACTTGAATGG+AGG | + | chr2.4:20464001-20464020 | MS.gene059733:CDS | 45.0% | |
| GTAGGAGGCAGAACTAACTT+GGG | + | chr2.4:20461982-20462001 | MS.gene059733:CDS | 45.0% | |
| GTCCAAAGGGTTCAAAACGT+TGG | + | chr2.4:20463410-20463429 | MS.gene059733:intron | 45.0% | |
| GTGACGATCCTAATAAAGCG+GGG | - | chr2.4:20463198-20463217 | None:intergenic | 45.0% | |
| TTAATGCCCGGAGCTTATCA+TGG | + | chr2.4:20462454-20462473 | MS.gene059733:intron | 45.0% | |
| !! | AATGGCAAAAGCATTAGCCG+AGG | + | chr2.4:20462431-20462450 | MS.gene059733:intron | 45.0% |
| !! | ATAGTGCCGGTGTACAACAA+AGG | + | chr2.4:20461932-20461951 | MS.gene059733:CDS | 45.0% |
| !! | GAGTTCTGGAAAACTTACGG+TGG | + | chr2.4:20461594-20461613 | MS.gene059733:CDS | 45.0% |
| ACTCCCGAGATGATTGCTAG+TGG | - | chr2.4:20462267-20462286 | None:intergenic | 50.0% | |
| AGCATCTGCCCAAAACACAG+TGG | - | chr2.4:20462166-20462185 | None:intergenic | 50.0% | |
| CATTAGCCGAGGTTAATGCC+CGG | + | chr2.4:20462442-20462461 | MS.gene059733:intron | 50.0% | |
| CGGTGGTAAAGGTTGGATTC+GGG | + | chr2.4:20461611-20461630 | MS.gene059733:CDS | 50.0% | |
| GGTGGTAAAGGTTGGATTCG+GGG | + | chr2.4:20461612-20461631 | MS.gene059733:CDS | 50.0% | |
| TAAAGGTTGGATTCGGGGTG+AGG | + | chr2.4:20461617-20461636 | MS.gene059733:CDS | 50.0% | |
| TAAGCTCCGGGCATTAACCT+CGG | - | chr2.4:20462451-20462470 | None:intergenic | 50.0% | |
| ! | CAGGCCTCCATTCAAGTTTC+TGG | - | chr2.4:20464008-20464027 | None:intergenic | 50.0% |
| !! | CTGTGTTTTGGGCAGATGCT+AGG | + | chr2.4:20462166-20462185 | MS.gene059733:intron | 50.0% |
| AGTTTGGTACAAGGGGAGGC+TGG | + | chr2.4:20462054-20462073 | MS.gene059733:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 20461586 | 20464030 | 20461586 | ID=MS.gene059733 |
| chr2.4 | mRNA | 20461586 | 20464030 | 20461586 | ID=MS.gene059733.t1;Parent=MS.gene059733 |
| chr2.4 | exon | 20461586 | 20462003 | 20461586 | ID=MS.gene059733.t1.exon1;Parent=MS.gene059733.t1 |
| chr2.4 | CDS | 20461586 | 20462003 | 20461586 | ID=cds.MS.gene059733.t1;Parent=MS.gene059733.t1 |
| chr2.4 | exon | 20462587 | 20463383 | 20462587 | ID=MS.gene059733.t1.exon2;Parent=MS.gene059733.t1 |
| chr2.4 | CDS | 20462587 | 20463383 | 20462587 | ID=cds.MS.gene059733.t1;Parent=MS.gene059733.t1 |
| chr2.4 | exon | 20463857 | 20463913 | 20463857 | ID=MS.gene059733.t1.exon3;Parent=MS.gene059733.t1 |
| chr2.4 | CDS | 20463857 | 20463913 | 20463857 | ID=cds.MS.gene059733.t1;Parent=MS.gene059733.t1 |
| chr2.4 | exon | 20463986 | 20464030 | 20463986 | ID=MS.gene059733.t1.exon4;Parent=MS.gene059733.t1 |
| chr2.4 | CDS | 20463986 | 20464030 | 20463986 | ID=cds.MS.gene059733.t1;Parent=MS.gene059733.t1 |
| Gene Sequence |
| Protein sequence |
