AlfalfaGEDB | MS.gene059775

M. sativa cultivar XinJiangDaYe / MS.gene059775

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0097159 GO:0110165 GO:1901363
PFAM: PF03110.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059775.t1	XP_013464662.1	94.1	68	4	0	5	72	104	171	2.30E-27	131

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059775.t1	Q9S7A9	66.0	47	15	1	5	51	100	145	1.0e-07	57.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059775.t1	A0A072VA58	94.1	68	4	0	5	72	104	171	1.6e-27	131.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene059775.t1	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059775.t1	MTR_2g078770	94.118	68	4	0	5	72	104	171	6.74e-42	134
MS.gene059775.t1	MTR_8g463140	55.714	70	29	1	5	72	111	180	4.03e-17	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059775.t1	AT1G53160	65.957	47	15	1	5	51	100	145	1.07e-12	59.7
MS.gene059775.t1	AT1G53160	65.957	47	15	1	5	51	100	145	1.07e-12	59.7
MS.gene059775.t1	AT1G53160	65.957	47	15	1	5	51	100	145	1.07e-12	59.7
MS.gene059775.t1	AT3G15270	74.359	39	10	0	5	43	109	147	2.14e-12	58.9
MS.gene059775.t1	AT2G33810	86.667	30	4	0	5	34	100	129	4.47e-11	54.7

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Find 9 sgRNAs with CRISPR-Local

Find 9 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTTGATGAGTGTGCGC+AGG	0.591425	2.4:+19691048	None:intergenic
ACTGCTGGAACTTGCACTGA+AGG	0.529046	2.4:+19691155	MS.gene059775:CDS
ACTGGCCAGCAAAATCATGA+TGG	0.639807	2.4:+19691185	MS.gene059775:CDS
AGCAAAATCATGATGGTGAT+TGG	0.426111	2.4:+19691192	MS.gene059775:CDS
ATGAACATAACAAGTAGTTC+TGG	0.412406	2.4:+19691227	MS.gene059775:CDS
CGGCGTCGTAAAAGCACTGC+TGG	0.466987	2.4:+19691140	MS.gene059775:CDS
GCTTAGCGCGACACAATGAA+CGG	0.657384	2.4:+19691120	MS.gene059775:CDS
GGAACTTGCACTGAAGGAAG+CGG	0.610870	2.4:+19691161	MS.gene059775:CDS
TGCACTGAAGGAAGCGGTAC+TGG	0.443322	2.4:+19691167	MS.gene059775:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATGAACATAACAAGTAGTTC+TGG	+	chr2.4:19691227-19691246	MS.gene059775:CDS	30.0%
	ACTGGCCAGCAAAATCATGA+TGG	+	chr2.4:19691185-19691204	MS.gene059775:CDS	45.0%
	ACTGCTGGAACTTGCACTGA+AGG	+	chr2.4:19691155-19691174	MS.gene059775:CDS	50.0%
	GCTTAGCGCGACACAATGAA+CGG	+	chr2.4:19691120-19691139	MS.gene059775:CDS	50.0%
	GGAACTTGCACTGAAGGAAG+CGG	+	chr2.4:19691161-19691180	MS.gene059775:CDS	50.0%
	TGCACTGAAGGAAGCGGTAC+TGG	+	chr2.4:19691167-19691186	MS.gene059775:CDS	55.0%
!	AATCACCATCATGATTTTGC+TGG	-	chr2.4:19691193-19691212	None:intergenic	35.0%
!	AGCAAAATCATGATGGTGAT+TGG	+	chr2.4:19691192-19691211	MS.gene059775:CDS	35.0%
!!	CGGCGTCGTAAAAGCACTGC+TGG	+	chr2.4:19691140-19691159	MS.gene059775:CDS	60.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	19691056	19691274	19691056	ID=MS.gene059775
chr2.4	mRNA	19691056	19691274	19691056	ID=MS.gene059775.t1;Parent=MS.gene059775
chr2.4	exon	19691056	19691274	19691056	ID=MS.gene059775.t1.exon1;Parent=MS.gene059775.t1
chr2.4	CDS	19691056	19691274	19691056	ID=cds.MS.gene059775.t1;Parent=MS.gene059775.t1

Gene Sequence	>MS.gene059775 ATGAGTGTGCGCAGGTTTCATGAGCTTGCAGAGTTTGATGAATCGAAAAGAAGCTGTCGAAGACGCTTAGCGCGACACAATGAACGGCGTCGTAAAAGCACTGCTGGAACTTGCACTGAAGGAAGCGGTACTGGCCAGCAAAATCATGATGGTGATTGGAGACAAATTCATATGAACATAACAAGTAGTTCTGGTCAAGATTTTCTGAATTTCAGATGA
Protein sequence	>MS.gene059775.t1 MSVRRFHELAEFDESKRSCRRRLARHNERRRKSTAGTCTEGSGTGQQNHDGDWRQIHMNITSSSGQDFLNFR