Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059976.t1 | XP_003608901.2 | 94.5 | 218 | 12 | 0 | 1 | 218 | 36 | 253 | 4.40E-114 | 420.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059976.t1 | G7JMN8 | 94.5 | 218 | 12 | 0 | 1 | 218 | 36 | 253 | 3.2e-114 | 420.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene059976.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059976.t1 | MTR_4g104230 | 94.495 | 218 | 12 | 0 | 1 | 218 | 36 | 253 | 1.01e-152 | 425 |
| MS.gene059976.t1 | MTR_4g104230 | 94.064 | 219 | 12 | 1 | 1 | 218 | 36 | 254 | 5.70e-151 | 420 |
| MS.gene059976.t1 | MTR_3g052770 | 62.385 | 218 | 82 | 0 | 1 | 218 | 32 | 249 | 1.18e-107 | 310 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059976.t1 | AT5G63280 | 62.562 | 203 | 76 | 0 | 1 | 203 | 31 | 233 | 7.34e-97 | 283 |
| MS.gene059976.t1 | AT5G40710 | 59.906 | 212 | 84 | 1 | 7 | 218 | 39 | 249 | 1.12e-94 | 278 |
| MS.gene059976.t1 | AT5G40710 | 65.409 | 159 | 55 | 0 | 8 | 166 | 40 | 198 | 4.65e-77 | 232 |
Find 45 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATGGACCCTCACTTAT+AGG | 0.232839 | 8.3:+18231060 | None:intergenic |
| TGTGATGCTCACTCCTGTTC+AGG | 0.266539 | 8.3:-18230860 | MS.gene059976:CDS |
| ACACTTGCTTCTAGAGGATT+TGG | 0.284180 | 8.3:+18231225 | None:intergenic |
| CCCTGAGAATGATATGTTTA+GGG | 0.285937 | 8.3:-18232279 | MS.gene059976:CDS |
| CGGTTTCTTGCAGCAGCTGC+TGG | 0.299401 | 8.3:+18231199 | None:intergenic |
| ACCCTGAGAATGATATGTTT+AGG | 0.338391 | 8.3:-18232280 | MS.gene059976:CDS |
| TCTCTAGAGCAATGCACTTC+AGG | 0.339242 | 8.3:+18232638 | None:intergenic |
| AGGAGTGAGCATCACAAAAT+TGG | 0.344243 | 8.3:+18230867 | None:intergenic |
| GGGTTTGTGTTTCCCTGAAC+AGG | 0.363706 | 8.3:+18230847 | None:intergenic |
| TCAGGTTATGAGGAATCTTC+TGG | 0.369496 | 8.3:-18233055 | None:intergenic |
| TCTTTATTTATTTGATGAAA+AGG | 0.392404 | 8.3:-18230294 | None:intergenic |
| TTATAGTAGGAATCTTAAAC+AGG | 0.417571 | 8.3:-18232675 | MS.gene059976:intron |
| TCCCTAAACATATCATTCTC+AGG | 0.425069 | 8.3:+18232278 | None:intergenic |
| AAATGCTTCGCTGATTTATG+TGG | 0.425702 | 8.3:-18231277 | MS.gene059976:CDS |
| CCATCAGCAAGCCGTCTTCA+TGG | 0.441147 | 8.3:-18231045 | MS.gene059976:intron |
| AGATCAATGCTCCGGCGGCC+AGG | 0.444945 | 8.3:+18230341 | None:intergenic |
| GTGATGCTCACTCCTGTTCA+GGG | 0.446768 | 8.3:-18230859 | MS.gene059976:CDS |
| TCAAGGAAGTTTCTTTCGCC+TGG | 0.471327 | 8.3:-18230359 | MS.gene059976:CDS |
| ATTGCTCTAGAGAGAGAAGC+AGG | 0.482407 | 8.3:-18232628 | MS.gene059976:CDS |
| AGTTTCTTTCGCCTGGCCGC+CGG | 0.484275 | 8.3:-18230352 | MS.gene059976:CDS |
| TACCTTGCCTACTCTAGAGA+AGG | 0.525402 | 8.3:+18230826 | None:intergenic |
| GTAGTATTTGACACCATTTG+TGG | 0.525738 | 8.3:-18232342 | MS.gene059976:intron |
| GGTTGCTTCGAAAGTGATAG+AGG | 0.525753 | 8.3:-18232606 | MS.gene059976:CDS |
| CCATGAAGACGGCTTGCTGA+TGG | 0.527181 | 8.3:+18231045 | None:intergenic |
| AATGCTTCGCTGATTTATGT+GGG | 0.533259 | 8.3:-18231276 | MS.gene059976:CDS |
| TGGATTACACTTGCTTCTAG+AGG | 0.538171 | 8.3:+18231219 | None:intergenic |
| TTTATCTAGACAGAAATGAA+TGG | 0.558782 | 8.3:-18232238 | MS.gene059976:CDS |
| TTTAATTGTGATCAGGGTCA+AGG | 0.560002 | 8.3:-18230376 | MS.gene059976:intron |
| TAGCACTAAGATCAATGCTC+CGG | 0.569538 | 8.3:+18230333 | None:intergenic |
| ATGAGGAATCTTCTGGTGAA+AGG | 0.570519 | 8.3:-18233048 | None:intergenic |
| CCCTAAACATATCATTCTCA+GGG | 0.574589 | 8.3:+18232279 | None:intergenic |
| ACCCTTCTCTAGAGTAGGCA+AGG | 0.578969 | 8.3:-18230828 | MS.gene059976:intron |
| ACCTTGCCTACTCTAGAGAA+GGG | 0.589412 | 8.3:+18230827 | None:intergenic |
| AAATTAAAGCAACCTCACAT+AGG | 0.622173 | 8.3:+18231173 | None:intergenic |
| TTAATTTGAATACAGAGTCA+CGG | 0.624981 | 8.3:-18231301 | MS.gene059976:intron |
| AAGCAACCTCACATAGGTGA+CGG | 0.626590 | 8.3:+18231179 | None:intergenic |
| CACAAACCCTTCTCTAGAGT+AGG | 0.639033 | 8.3:-18230833 | MS.gene059976:CDS |
| ATATAAGTATACCATGAAGA+CGG | 0.640466 | 8.3:+18231034 | None:intergenic |
| ATGCTTCGCTGATTTATGTG+GGG | 0.654468 | 8.3:-18231275 | MS.gene059976:CDS |
| CACTAAGATCAATGCTCCGG+CGG | 0.665181 | 8.3:+18230336 | None:intergenic |
| GACAGAAATGAATGGCGATG+TGG | 0.677495 | 8.3:-18232230 | MS.gene059976:CDS |
| TAAATAAAGAGATAGAACAC+AGG | 0.680639 | 8.3:+18230307 | None:intergenic |
| TTGCTCTAGAGAGAGAAGCA+GGG | 0.684514 | 8.3:-18232627 | MS.gene059976:CDS |
| TGCTTCGAAAGTGATAGAGG+AGG | 0.706489 | 8.3:-18232603 | MS.gene059976:intron |
| AAGAAACCGTCACCTATGTG+AGG | 0.712031 | 8.3:-18231185 | MS.gene059976:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAGTAATTTTAACATT+GGG | - | chr8.3:18231888-18231907 | MS.gene059976:intron | 10.0% |
| !! | AACATTTAGATGTAATAATT+AGG | - | chr8.3:18230892-18230911 | MS.gene059976:intron | 15.0% |
| !! | AATACTACAAAAACATATAT+AGG | + | chr8.3:18230984-18231003 | None:intergenic | 15.0% |
| !! | ATAATGAAAACAAATTTAAC+CGG | + | chr8.3:18232554-18232573 | None:intergenic | 15.0% |
| !! | ATTTGTTTCAAAAAAAGTAA+AGG | + | chr8.3:18232784-18232803 | None:intergenic | 15.0% |
| !! | TATTTATTTAATTGTGATCA+GGG | - | chr8.3:18232956-18232975 | MS.gene059976:intron | 15.0% |
| !! | TTGCAGAAATAAAAATTAAT+AGG | + | chr8.3:18231341-18231360 | None:intergenic | 15.0% |
| !!! | CATTTTAATTTCTAAATGTT+TGG | - | chr8.3:18230339-18230358 | MS.gene059976:CDS | 15.0% |
| !!! | CATTTTAGTAATTTTAACAT+TGG | - | chr8.3:18231887-18231906 | MS.gene059976:intron | 15.0% |
| !!! | GTATACTTATATTTTCTTTT+CGG | - | chr8.3:18232315-18232334 | MS.gene059976:CDS | 15.0% |
| !!! | TCTTTATTTATTTGATGAAA+AGG | - | chr8.3:18233044-18233063 | MS.gene059976:intron | 15.0% |
| !! | AAAATTATTGCGATTGAAAA+AGG | + | chr8.3:18230771-18230790 | None:intergenic | 20.0% |
| !! | ATAAAGAATGCATATAGATT+AGG | + | chr8.3:18232230-18232249 | None:intergenic | 20.0% |
| !! | CTATTTATTTAATTGTGATC+AGG | - | chr8.3:18232955-18232974 | MS.gene059976:intron | 20.0% |
| !! | CTGATCACAATTAAATAAAT+AGG | + | chr8.3:18232957-18232976 | None:intergenic | 20.0% |
| !! | TTAATATTTACTACATTCCT+AGG | + | chr8.3:18231623-18231642 | None:intergenic | 20.0% |
| !!! | AGGAAGCTTTTATAATTTTT+AGG | - | chr8.3:18232821-18232840 | MS.gene059976:intron | 20.0% |
| !!! | ATGTTTTTATTCCAAGAAAA+TGG | - | chr8.3:18231510-18231529 | MS.gene059976:intron | 20.0% |
| !!! | ATTTTCTTGGAATAAAAACA+TGG | + | chr8.3:18231511-18231530 | None:intergenic | 20.0% |
| !!! | TGTTTTTATTCCAAGAAAAT+GGG | - | chr8.3:18231511-18231530 | MS.gene059976:intron | 20.0% |
| !!! | TTTCAATCGCAATAATTTTA+TGG | - | chr8.3:18230772-18230791 | MS.gene059976:intron | 20.0% |
| !!! | TTTTCTTGGAATAAAAACAT+GGG | + | chr8.3:18231510-18231529 | None:intergenic | 20.0% |
| ! | AAAAATCATTCCCAAGAATA+TGG | - | chr8.3:18231408-18231427 | MS.gene059976:intron | 25.0% |
| ! | AAATGCAATTCTATACTCTT+AGG | - | chr8.3:18231365-18231384 | MS.gene059976:intron | 25.0% |
| ! | AATATGGAAGTTACAAAGAA+GGG | - | chr8.3:18231424-18231443 | MS.gene059976:intron | 25.0% |
| ! | AATGCAATTCTATACTCTTA+GGG | - | chr8.3:18231366-18231385 | MS.gene059976:intron | 25.0% |
| ! | ATATAAGTATACCATGAAGA+CGG | + | chr8.3:18232307-18232326 | None:intergenic | 25.0% |
| ! | CTAGGATTATTTGTAAACAT+GGG | + | chr8.3:18231605-18231624 | None:intergenic | 25.0% |
| ! | TAAATAAAGAGATAGAACAC+AGG | + | chr8.3:18233034-18233053 | None:intergenic | 25.0% |
| ! | TAGGATTATTTGTAAACATG+GGG | + | chr8.3:18231604-18231623 | None:intergenic | 25.0% |
| ! | TTATAGTAGGAATCTTAAAC+AGG | - | chr8.3:18230663-18230682 | MS.gene059976:intron | 25.0% |
| ! | TTTACAAAGTCACTTATAAC+TGG | + | chr8.3:18230434-18230453 | None:intergenic | 25.0% |
| ! | TTTATCTAGACAGAAATGAA+TGG | - | chr8.3:18231100-18231119 | MS.gene059976:intron | 25.0% |
| ! | TTTGTAACTTCCATATTCTT+GGG | + | chr8.3:18231421-18231440 | None:intergenic | 25.0% |
| !! | ATTGATTAGTTCAGTAATAC+AGG | - | chr8.3:18232594-18232613 | MS.gene059976:intron | 25.0% |
| !! | CTCTTATCTTATGTTTCTTT+TGG | - | chr8.3:18231243-18231262 | MS.gene059976:CDS | 25.0% |
| !! | GATCAAGAAATTTTTCTTCA+CGG | + | chr8.3:18231152-18231171 | None:intergenic | 25.0% |
| !! | TAAGAGTATAGAATTGCATT+TGG | + | chr8.3:18231366-18231385 | None:intergenic | 25.0% |
| !! | TAGTTTTCTTTTTCCACAAA+TGG | + | chr8.3:18231012-18231031 | None:intergenic | 25.0% |
| !! | TTAATTTGAATACAGAGTCA+CGG | - | chr8.3:18232037-18232056 | MS.gene059976:intron | 25.0% |
| !! | TTGATTAGTTCAGTAATACA+GGG | - | chr8.3:18232595-18232614 | MS.gene059976:intron | 25.0% |
| !!! | TATAAAAAGAGTGCTATGTA+AGG | + | chr8.3:18230648-18230667 | None:intergenic | 25.0% |
| !!! | TTACTTGAATGGTTGATTTT+TGG | - | chr8.3:18232710-18232729 | MS.gene059976:intron | 25.0% |
| !!! | TTGATCAACATTTTGATAAC+AGG | - | chr8.3:18231166-18231185 | MS.gene059976:intron | 25.0% |
| AAAGTAAACTTATGAGAGAG+CGG | + | chr8.3:18231747-18231766 | None:intergenic | 30.0% | |
| AAATTAAAGCAACCTCACAT+AGG | + | chr8.3:18232168-18232187 | None:intergenic | 30.0% | |
| AGAAAACAGTAATACCTGTA+AGG | + | chr8.3:18231297-18231316 | None:intergenic | 30.0% | |
| ATAAAATATTCCCATGAAGG+TGG | - | chr8.3:18231539-18231558 | MS.gene059976:intron | 30.0% | |
| ATGCAATTCTATACTCTTAG+GGG | - | chr8.3:18231367-18231386 | MS.gene059976:intron | 30.0% | |
| ATGGGAAGTTATTTAATTCC+TGG | + | chr8.3:18231485-18231504 | None:intergenic | 30.0% | |
| CCATGTTTACAAATAATCCT+AGG | - | chr8.3:18231603-18231622 | MS.gene059976:intron | 30.0% | |
| CCATTCAAGTAATGTCAATA+CGG | + | chr8.3:18232702-18232721 | None:intergenic | 30.0% | |
| CCTAGGATTATTTGTAAACA+TGG | + | chr8.3:18231606-18231625 | None:intergenic | 30.0% | |
| CTTTGTAACTTCCATATTCT+TGG | + | chr8.3:18231422-18231441 | None:intergenic | 30.0% | |
| GAATATGGAAGTTACAAAGA+AGG | - | chr8.3:18231423-18231442 | MS.gene059976:intron | 30.0% | |
| GGAATAAAAACATGGGAAAT+GGG | + | chr8.3:18231503-18231522 | None:intergenic | 30.0% | |
| GGAATAAAATATTCCCATGA+AGG | - | chr8.3:18231536-18231555 | MS.gene059976:intron | 30.0% | |
| TAAAAGCTTCCTGATAGAAA+AGG | + | chr8.3:18232813-18232832 | None:intergenic | 30.0% | |
| TAAAATATTCCCATGAAGGT+GGG | - | chr8.3:18231540-18231559 | MS.gene059976:intron | 30.0% | |
| TAAACTCAAAACAGACTTGT+TGG | - | chr8.3:18231922-18231941 | MS.gene059976:intron | 30.0% | |
| TAATACCTGTAAGGTAATAC+TGG | + | chr8.3:18231288-18231307 | None:intergenic | 30.0% | |
| TAATCATGTGAACAAGCTAA+GGG | + | chr8.3:18230616-18230635 | None:intergenic | 30.0% | |
| TGGAATAAAAACATGGGAAA+TGG | + | chr8.3:18231504-18231523 | None:intergenic | 30.0% | |
| TGGGAAGTTATTTAATTCCT+GGG | + | chr8.3:18231484-18231503 | None:intergenic | 30.0% | |
| TTAATCATGTGAACAAGCTA+AGG | + | chr8.3:18230617-18230636 | None:intergenic | 30.0% | |
| TTTATTCCAAGAAAATGGGT+GGG | - | chr8.3:18231515-18231534 | MS.gene059976:intron | 30.0% | |
| TTTGTAAACATGGGGAATAT+AGG | + | chr8.3:18231596-18231615 | None:intergenic | 30.0% | |
| ! | AATGTCTTTCCTTTTCTATC+AGG | - | chr8.3:18232801-18232820 | MS.gene059976:intron | 30.0% |
| ! | CATAGCACTCTTTTTATAGT+AGG | - | chr8.3:18230650-18230669 | MS.gene059976:intron | 30.0% |
| ! | GCAATAATTTTATGGCATTG+AGG | - | chr8.3:18230780-18230799 | MS.gene059976:intron | 30.0% |
| ! | TTCTTATGTTGATTGTGCAT+TGG | - | chr8.3:18232432-18232451 | MS.gene059976:intron | 30.0% |
| ! | TTTTATTCCAAGAAAATGGG+TGG | - | chr8.3:18231514-18231533 | MS.gene059976:intron | 30.0% |
| !! | AATTTTATGGCATTGAGGTA+TGG | - | chr8.3:18230785-18230804 | MS.gene059976:intron | 30.0% |
| !! | AGCATTGCACTTTTTATAAG+AGG | + | chr8.3:18231808-18231827 | None:intergenic | 30.0% |
| !! | AGTAATTTTAACATTGGGTG+TGG | - | chr8.3:18231893-18231912 | MS.gene059976:intron | 30.0% |
| !! | AGTTGTTTTCCTATAAGTGA+GGG | - | chr8.3:18232269-18232288 | MS.gene059976:CDS | 30.0% |
| !!! | GGTTTTCAAGTGACAAAAAA+AGG | - | chr8.3:18230360-18230379 | MS.gene059976:CDS | 30.0% |
| AAAATATTCCCATGAAGGTG+GGG | - | chr8.3:18231541-18231560 | MS.gene059976:intron | 35.0% | |
| AAGCTAGGATATTAATTCCC+AGG | - | chr8.3:18231464-18231483 | MS.gene059976:intron | 35.0% | |
| AATCTTCTGGTGAAAGGTAA+TGG | - | chr8.3:18230296-18230315 | MS.gene059976:CDS | 35.0% | |
| ACCCTGAGAATGATATGTTT+AGG | - | chr8.3:18231058-18231077 | MS.gene059976:CDS | 35.0% | |
| ATTTAACCGGTGAGATAATC+AGG | + | chr8.3:18232541-18232560 | None:intergenic | 35.0% | |
| CCACAATTTCATTACTCGTA+TGG | - | chr8.3:18232014-18232033 | MS.gene059976:intron | 35.0% | |
| CCATACGAGTAATGAAATTG+TGG | + | chr8.3:18232017-18232036 | None:intergenic | 35.0% | |
| CCCTAAACATATCATTCTCA+GGG | + | chr8.3:18231062-18231081 | None:intergenic | 35.0% | |
| CCCTGAGAATGATATGTTTA+GGG | - | chr8.3:18231059-18231078 | MS.gene059976:CDS | 35.0% | |
| CTACGTGTATGTTGTATGTT+TGG | + | chr8.3:18230535-18230554 | None:intergenic | 35.0% | |
| GATAACGAAGAAGATTGCTT+CGG | + | chr8.3:18230594-18230613 | None:intergenic | 35.0% | |
| GTAGTATTTGACACCATTTG+TGG | - | chr8.3:18230996-18231015 | MS.gene059976:intron | 35.0% | |
| TAGACATATGTCCTGATTCA+AGG | + | chr8.3:18230862-18230881 | None:intergenic | 35.0% | |
| TCAACTTTGTGAATAGCACA+AGG | + | chr8.3:18232668-18232687 | None:intergenic | 35.0% | |
| TCCCTAAACATATCATTCTC+AGG | + | chr8.3:18231063-18231082 | None:intergenic | 35.0% | |
| TGCAATTCTATACTCTTAGG+GGG | - | chr8.3:18231368-18231387 | MS.gene059976:intron | 35.0% | |
| TTATTGTAGTGCCTTGAATC+AGG | - | chr8.3:18230848-18230867 | MS.gene059976:CDS | 35.0% | |
| TTGAATCAGGACATATGTCT+AGG | - | chr8.3:18230861-18230880 | MS.gene059976:CDS | 35.0% | |
| TTTAATTGTGATCAGGGTCA+AGG | - | chr8.3:18232962-18232981 | MS.gene059976:intron | 35.0% | |
| ! | ACTTGTTGGAAGCTTAAGTT+TGG | - | chr8.3:18231936-18231955 | MS.gene059976:intron | 35.0% |
| ! | CCGTATTGACATTACTTGAA+TGG | - | chr8.3:18232699-18232718 | MS.gene059976:intron | 35.0% |
| ! | CCTATGTTTGTTACAAAGCT+AGG | - | chr8.3:18231449-18231468 | MS.gene059976:intron | 35.0% |
| ! | TATCTGTGTTGTGAGGTTTT+AGG | - | chr8.3:18232642-18232661 | MS.gene059976:CDS | 35.0% |
| ! | TGGGAATGATTTTTACAACC+AGG | + | chr8.3:18231402-18231421 | None:intergenic | 35.0% |
| ! | TTTATTCCCACCCATTTTCT+TGG | + | chr8.3:18231524-18231543 | None:intergenic | 35.0% |
| !! | AAATGCTTCGCTGATTTATG+TGG | - | chr8.3:18232061-18232080 | MS.gene059976:intron | 35.0% |
| !! | AATGCTTCGCTGATTTATGT+GGG | - | chr8.3:18232062-18232081 | MS.gene059976:intron | 35.0% |
| !! | CAGTTGTTTTCCTATAAGTG+AGG | - | chr8.3:18232268-18232287 | MS.gene059976:CDS | 35.0% |
| !! | CCACAGTTTCTGAAGATTTT+GGG | - | chr8.3:18232887-18232906 | MS.gene059976:intron | 35.0% |
| !! | CCTAGCTTTGTAACAAACAT+AGG | + | chr8.3:18231452-18231471 | None:intergenic | 35.0% |
| !!! | TGTATGTTTGGTTCTGCTTT+TGG | + | chr8.3:18230523-18230542 | None:intergenic | 35.0% |
| AGGAGTGAGCATCACAAAAT+TGG | + | chr8.3:18232474-18232493 | None:intergenic | 40.0% | |
| AGTGACTAGTGACATCATTG+TGG | + | chr8.3:18232355-18232374 | None:intergenic | 40.0% | |
| ATGGCATAGAGAGTTAGGAT+TGG | - | chr8.3:18231692-18231711 | MS.gene059976:intron | 40.0% | |
| CAACACAGATACTCTATGAC+TGG | + | chr8.3:18232633-18232652 | None:intergenic | 40.0% | |
| CAATTGTTTATTCCCACGTG+CGG | + | chr8.3:18231836-18231855 | None:intergenic | 40.0% | |
| CCCAAAATCTTCAGAAACTG+TGG | + | chr8.3:18232890-18232909 | None:intergenic | 40.0% | |
| GAATATAGGTGGTTACTAGG+TGG | + | chr8.3:18231582-18231601 | None:intergenic | 40.0% | |
| GTAAACATGGGGAATATAGG+TGG | + | chr8.3:18231593-18231612 | None:intergenic | 40.0% | |
| TAGCACTAAGATCAATGCTC+CGG | + | chr8.3:18233008-18233027 | None:intergenic | 40.0% | |
| TGGATTACACTTGCTTCTAG+AGG | + | chr8.3:18232122-18232141 | None:intergenic | 40.0% | |
| TTGAGCCAGTATTACCTTAC+AGG | - | chr8.3:18231280-18231299 | MS.gene059976:CDS | 40.0% | |
| ! | ACACTTGCTTCTAGAGGATT+TGG | + | chr8.3:18232116-18232135 | None:intergenic | 40.0% |
| ! | ATAGAGAGTTAGGATTGGCA+GGG | - | chr8.3:18231697-18231716 | MS.gene059976:intron | 40.0% |
| ! | CACAGTTTTGCTCTCTAAAC+TGG | - | chr8.3:18230951-18230970 | MS.gene059976:intron | 40.0% |
| ! | CATAGAGTATCTGTGTTGTG+AGG | - | chr8.3:18232635-18232654 | MS.gene059976:CDS | 40.0% |
| ! | GAAAGTGATAGAGGAGGTAT+GGG | - | chr8.3:18230741-18230760 | MS.gene059976:intron | 40.0% |
| !! | AAGTTTTATCCCCACCTTCA+TGG | + | chr8.3:18231553-18231572 | None:intergenic | 40.0% |
| !! | AGTTTTATCCCCACCTTCAT+GGG | + | chr8.3:18231552-18231571 | None:intergenic | 40.0% |
| !! | ATGCTTCGCTGATTTATGTG+GGG | - | chr8.3:18232063-18232082 | MS.gene059976:intron | 40.0% |
| !! | GCCACAGTTTCTGAAGATTT+TGG | - | chr8.3:18232886-18232905 | MS.gene059976:intron | 40.0% |
| !! | TCTGGTGAAAGGTAATGGAA+TGG | - | chr8.3:18230301-18230320 | MS.gene059976:CDS | 40.0% |
| !!! | ATGTTTGGTTCTGCTTTTGG+AGG | + | chr8.3:18230520-18230539 | None:intergenic | 40.0% |
| AACTCTCTATGCCATCAGAG+AGG | + | chr8.3:18231687-18231706 | None:intergenic | 45.0% | |
| AAGAAACCGTCACCTATGTG+AGG | - | chr8.3:18232153-18232172 | MS.gene059976:CDS | 45.0% | |
| AAGCAACCTCACATAGGTGA+CGG | + | chr8.3:18232162-18232181 | None:intergenic | 45.0% | |
| CGAAAGTGATAGAGGAGGTA+TGG | - | chr8.3:18230740-18230759 | MS.gene059976:intron | 45.0% | |
| CGCACGTGGGAATAAACAAT+TGG | - | chr8.3:18231834-18231853 | MS.gene059976:intron | 45.0% | |
| CTCTGATGGCATAGAGAGTT+AGG | - | chr8.3:18231687-18231706 | MS.gene059976:intron | 45.0% | |
| GACAGAAATGAATGGCGATG+TGG | - | chr8.3:18231108-18231127 | MS.gene059976:intron | 45.0% | |
| GGGGAATATAGGTGGTTACT+AGG | + | chr8.3:18231585-18231604 | None:intergenic | 45.0% | |
| GGTTGCTTCGAAAGTGATAG+AGG | - | chr8.3:18230732-18230751 | MS.gene059976:intron | 45.0% | |
| GTAAGGCCTGATTATCTCAC+CGG | - | chr8.3:18232532-18232551 | MS.gene059976:intron | 45.0% | |
| TATGTTACCTGCCTCTCTGA+TGG | - | chr8.3:18231673-18231692 | MS.gene059976:intron | 45.0% | |
| TCAAGGAAGTTTCTTTCGCC+TGG | - | chr8.3:18232979-18232998 | MS.gene059976:intron | 45.0% | |
| TGCTTCGAAAGTGATAGAGG+AGG | - | chr8.3:18230735-18230754 | MS.gene059976:intron | 45.0% | |
| ! | ACCTTGCCTACTCTAGAGAA+GGG | + | chr8.3:18232514-18232533 | None:intergenic | 45.0% |
| ! | CATAGAGAGTTAGGATTGGC+AGG | - | chr8.3:18231696-18231715 | MS.gene059976:intron | 45.0% |
| ! | CTTATGAGAGAGCGGATTCA+CGG | + | chr8.3:18231739-18231758 | None:intergenic | 45.0% |
| ! | TACCTTGCCTACTCTAGAGA+AGG | + | chr8.3:18232515-18232534 | None:intergenic | 45.0% |
| !! | ATTGCTCTAGAGAGAGAAGC+AGG | - | chr8.3:18230710-18230729 | MS.gene059976:intron | 45.0% |
| !! | CACAAACCCTTCTCTAGAGT+AGG | - | chr8.3:18232505-18232524 | MS.gene059976:intron | 45.0% |
| !! | TCTCTAGAGCAATGCACTTC+AGG | + | chr8.3:18230703-18230722 | None:intergenic | 45.0% |
| !! | TCTCTAGAGTAGGCAAGGTA+AGG | - | chr8.3:18232515-18232534 | MS.gene059976:intron | 45.0% |
| !! | TTGCTCTAGAGAGAGAAGCA+GGG | - | chr8.3:18230711-18230730 | MS.gene059976:intron | 45.0% |
| !!! | TTTGGTTCTGCTTTTGGAGG+AGG | + | chr8.3:18230517-18230536 | None:intergenic | 45.0% |
| AGCTAGTGTGACAGCGAGTT+TGG | + | chr8.3:18232759-18232778 | None:intergenic | 50.0% | |
| CAATGCTTCTTTCCGCACGT+GGG | - | chr8.3:18231821-18231840 | MS.gene059976:intron | 50.0% | |
| CACTAAGATCAATGCTCCGG+CGG | + | chr8.3:18233005-18233024 | None:intergenic | 50.0% | |
| GGGTTTGTGTTTCCCTGAAC+AGG | + | chr8.3:18232494-18232513 | None:intergenic | 50.0% | |
| GTGATGCTCACTCCTGTTCA+GGG | - | chr8.3:18232479-18232498 | MS.gene059976:intron | 50.0% | |
| TGTGATGCTCACTCCTGTTC+AGG | - | chr8.3:18232478-18232497 | MS.gene059976:intron | 50.0% | |
| ! | GCTGATGGACCCTCACTTAT+AGG | + | chr8.3:18232281-18232300 | None:intergenic | 50.0% |
| !! | ACCCTTCTCTAGAGTAGGCA+AGG | - | chr8.3:18232510-18232529 | MS.gene059976:intron | 50.0% |
| !! | TCTTAGGGGGTGTTTGTTCC+TGG | - | chr8.3:18231381-18231400 | MS.gene059976:intron | 50.0% |
| CCATCAGCAAGCCGTCTTCA+TGG | - | chr8.3:18232293-18232312 | MS.gene059976:CDS | 55.0% | |
| CTCTATGCCATCAGAGAGGC+AGG | + | chr8.3:18231683-18231702 | None:intergenic | 55.0% | |
| GCAATGCTTCTTTCCGCACG+TGG | - | chr8.3:18231820-18231839 | MS.gene059976:intron | 55.0% | |
| ! | ATGAGAGAGCGGATTCACGG+CGG | + | chr8.3:18231736-18231755 | None:intergenic | 55.0% |
| !! | CCATGAAGACGGCTTGCTGA+TGG | + | chr8.3:18232296-18232315 | None:intergenic | 55.0% |
| AGTTTCTTTCGCCTGGCCGC+CGG | - | chr8.3:18232986-18233005 | MS.gene059976:intron | 60.0% | |
| CGGTTTCTTGCAGCAGCTGC+TGG | + | chr8.3:18232142-18232161 | None:intergenic | 60.0% | |
| ! | TGAGAGAGCGGATTCACGGC+GGG | + | chr8.3:18231735-18231754 | None:intergenic | 60.0% |
| AGATCAATGCTCCGGCGGCC+AGG | + | chr8.3:18233000-18233019 | None:intergenic | 65.0% | |
| ! | GAGAGAGCGGATTCACGGCG+GGG | + | chr8.3:18231734-18231753 | None:intergenic | 65.0% |
| ! | GAGCGGATTCACGGCGGGGC+AGG | + | chr8.3:18231730-18231749 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18230295 | 18233065 | 18230295 | ID=MS.gene059976 |
| chr8.3 | mRNA | 18230295 | 18233065 | 18230295 | ID=MS.gene059976.t1;Parent=MS.gene059976 |
| chr8.3 | exon | 18233049 | 18233065 | 18233049 | ID=MS.gene059976.t1.exon1;Parent=MS.gene059976.t1 |
| chr8.3 | CDS | 18233049 | 18233065 | 18233049 | ID=cds.MS.gene059976.t1;Parent=MS.gene059976.t1 |
| chr8.3 | exon | 18232604 | 18232688 | 18232604 | ID=MS.gene059976.t1.exon2;Parent=MS.gene059976.t1 |
| chr8.3 | CDS | 18232604 | 18232688 | 18232604 | ID=cds.MS.gene059976.t1;Parent=MS.gene059976.t1 |
| chr8.3 | exon | 18232151 | 18232360 | 18232151 | ID=MS.gene059976.t1.exon3;Parent=MS.gene059976.t1 |
| chr8.3 | CDS | 18232151 | 18232360 | 18232151 | ID=cds.MS.gene059976.t1;Parent=MS.gene059976.t1 |
| chr8.3 | exon | 18231186 | 18231308 | 18231186 | ID=MS.gene059976.t1.exon4;Parent=MS.gene059976.t1 |
| chr8.3 | CDS | 18231186 | 18231308 | 18231186 | ID=cds.MS.gene059976.t1;Parent=MS.gene059976.t1 |
| chr8.3 | exon | 18231046 | 18231103 | 18231046 | ID=MS.gene059976.t1.exon5;Parent=MS.gene059976.t1 |
| chr8.3 | CDS | 18231046 | 18231103 | 18231046 | ID=cds.MS.gene059976.t1;Parent=MS.gene059976.t1 |
| chr8.3 | exon | 18230829 | 18230902 | 18230829 | ID=MS.gene059976.t1.exon6;Parent=MS.gene059976.t1 |
| chr8.3 | CDS | 18230829 | 18230902 | 18230829 | ID=cds.MS.gene059976.t1;Parent=MS.gene059976.t1 |
| chr8.3 | exon | 18230295 | 18230383 | 18230295 | ID=MS.gene059976.t1.exon7;Parent=MS.gene059976.t1 |
| chr8.3 | CDS | 18230295 | 18230383 | 18230295 | ID=cds.MS.gene059976.t1;Parent=MS.gene059976.t1 |
| Gene Sequence |
| Protein sequence |
