Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060227.t1 | PNX89523.1 | 39.6 | 338 | 188 | 5 | 17 | 352 | 11 | 334 | 1.50E-10 | 77.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060227.t1 | A0A2K3MFE8 | 39.6 | 338 | 188 | 5 | 17 | 352 | 11 | 334 | 1.1e-10 | 77.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene060227.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 121 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATGTGGAGGCGGATTT+TGG | 0.148513 | 5.4:+59757246 | None:intergenic |
| AGATTTGTTGCACGAGTGTT+TGG | 0.301888 | 5.4:-59756899 | MS.gene060227:CDS |
| TTCCTCCAGCGGCATTTCTC+AGG | 0.312507 | 5.4:-59756790 | MS.gene060227:CDS |
| CCTGATTGCTGCCGAGATAC+TGG | 0.331416 | 5.4:-59757489 | MS.gene060227:CDS |
| TTCGGGATGAGGAGGAGAAT+TGG | 0.336432 | 5.4:+59757310 | None:intergenic |
| ACTCGTGCAACAAATCTTCT+TGG | 0.342234 | 5.4:+59756905 | None:intergenic |
| GGTGGGAATGTGGCTAATAA+TGG | 0.350488 | 5.4:-59757095 | MS.gene060227:CDS |
| CTATAGGCTAAGGAGTTTGC+TGG | 0.354712 | 5.4:-59757648 | MS.gene060227:CDS |
| ACTCCTTAGCCTATAGAAAA+AGG | 0.359699 | 5.4:+59757655 | None:intergenic |
| TAAGACACACTTACCTTGTC+TGG | 0.362065 | 5.4:+59758474 | None:intergenic |
| TTCAACTCCTGTGGCAGAAC+CGG | 0.369949 | 5.4:-59757357 | MS.gene060227:CDS |
| TCCCTAGCATACATAACATA+TGG | 0.379144 | 5.4:+59756689 | None:intergenic |
| GACACAAGAGGTTCGAGGTT+TGG | 0.386987 | 5.4:-59757707 | MS.gene060227:CDS |
| TCATGGCCGCGCTTACATTC+AGG | 0.392786 | 5.4:-59758518 | MS.gene060227:CDS |
| TGGCAGTTGGGAAAAGTGTT+AGG | 0.395161 | 5.4:-59756733 | MS.gene060227:CDS |
| GGCATTGTGTGGTTGTTGAT+TGG | 0.403874 | 5.4:+59757277 | None:intergenic |
| TGATTGGCATCATGAACTTC+GGG | 0.411728 | 5.4:+59757293 | None:intergenic |
| CGGAGAACCGGCTGGCAGTT+GGG | 0.421662 | 5.4:-59756745 | MS.gene060227:CDS |
| TGATGCTGCTGCTGTTGCCA+TGG | 0.428743 | 5.4:-59757144 | MS.gene060227:CDS |
| TCCTCCAGCGGCATTTCTCA+GGG | 0.443998 | 5.4:-59756789 | MS.gene060227:CDS |
| CGGACAGGGGCTGTTCTACA+TGG | 0.447788 | 5.4:-59757579 | MS.gene060227:CDS |
| TCGGGATGAGGAGGAGAATT+GGG | 0.451241 | 5.4:+59757311 | None:intergenic |
| GACGATGATTCCATCGATCT+TGG | 0.451452 | 5.4:-59757410 | MS.gene060227:CDS |
| GATTTGTTGCACGAGTGTTT+GGG | 0.452697 | 5.4:-59756898 | MS.gene060227:CDS |
| AGAGATTTGTTACGGAGAAC+CGG | 0.452877 | 5.4:-59756757 | MS.gene060227:CDS |
| GTGGGAATGTGGCTAATAAT+GGG | 0.456886 | 5.4:-59757094 | MS.gene060227:CDS |
| CCAGTATCTCGGCAGCAATC+AGG | 0.457630 | 5.4:+59757489 | None:intergenic |
| GAGCACTTCCACCAGCCGTT+AGG | 0.466631 | 5.4:-59757626 | MS.gene060227:CDS |
| CGAGATACTGGATCCCTTGG+AGG | 0.468114 | 5.4:-59757477 | MS.gene060227:CDS |
| ATCGTCGTCGTTGTCTTCAT+CGG | 0.472155 | 5.4:+59757427 | None:intergenic |
| ACATCAACATCCGCTGGATC+CGG | 0.472816 | 5.4:+59757338 | None:intergenic |
| TTGATTGGCATCATGAACTT+CGG | 0.473733 | 5.4:+59757292 | None:intergenic |
| CAGCGGCATTTCTCAGGGGC+GGG | 0.478818 | 5.4:-59756784 | MS.gene060227:CDS |
| ATGAACTACGACACAGAGTC+TGG | 0.481562 | 5.4:-59757736 | MS.gene060227:CDS |
| ACAGGAGTTGAAGGAGGTGC+AGG | 0.491094 | 5.4:+59757368 | None:intergenic |
| CATGGTGAAGACTAGCAATC+TGG | 0.491937 | 5.4:-59757036 | MS.gene060227:intron |
| ACGGAGAACCGGCTGGCAGT+TGG | 0.492128 | 5.4:-59756746 | MS.gene060227:CDS |
| GCTGGATCCGGTTCTGCCAC+AGG | 0.493035 | 5.4:+59757350 | None:intergenic |
| GATGCTGCTGCTGTTGCCAT+GGG | 0.497052 | 5.4:-59757143 | MS.gene060227:CDS |
| TGGGCTTTGACTTTCCGTGC+AGG | 0.505024 | 5.4:-59756838 | MS.gene060227:CDS |
| CGGCATTTCTCAGGGGCGGG+TGG | 0.507786 | 5.4:-59756781 | MS.gene060227:CDS |
| CCCTAGCATACATAACATAT+GGG | 0.511261 | 5.4:+59756690 | None:intergenic |
| GCATCATGAACTTCGGGATG+AGG | 0.512150 | 5.4:+59757299 | None:intergenic |
| GGTTCTGCCACAGGAGTTGA+AGG | 0.512252 | 5.4:+59757359 | None:intergenic |
| TCATAGGAAGTGAGGGGACG+CGG | 0.513245 | 5.4:-59757679 | MS.gene060227:CDS |
| AACGATGAAGATGTGGAAGA+TGG | 0.513612 | 5.4:-59757194 | MS.gene060227:CDS |
| CCAGCGGCATTTCTCAGGGG+CGG | 0.516500 | 5.4:-59756785 | MS.gene060227:CDS |
| CCTCTCACGAACCGTTAGCT+CGG | 0.521815 | 5.4:+59757535 | None:intergenic |
| GCAAAATCAAAGAAATTATG+TGG | 0.521917 | 5.4:+59757233 | None:intergenic |
| TGCCGAGATACTGGATCCCT+TGG | 0.522650 | 5.4:-59757480 | MS.gene060227:CDS |
| TCATACTTCAACAACCACTT+TGG | 0.527976 | 5.4:-59757761 | MS.gene060227:CDS |
| ACCCATATGTTATGTATGCT+AGG | 0.529159 | 5.4:-59756691 | MS.gene060227:CDS |
| GTATGCTAGGGAAGCTCGGA+TGG | 0.537149 | 5.4:-59756678 | MS.gene060227:CDS |
| AAGTGGTTGTTGAAGTATGA+TGG | 0.538484 | 5.4:+59757764 | None:intergenic |
| AACATCAATGCCAAGATCGA+TGG | 0.539611 | 5.4:+59757400 | None:intergenic |
| GCGTCTAAGTTACAACGGAC+AGG | 0.542298 | 5.4:-59757594 | MS.gene060227:CDS |
| CCGCCCCTGAGAAATGCCGC+TGG | 0.546065 | 5.4:+59756785 | None:intergenic |
| CATCCTACTTACAGATGCCA+TGG | 0.546268 | 5.4:-59756858 | MS.gene060227:CDS |
| ATTTGTTACGGAGAACCGGC+TGG | 0.553165 | 5.4:-59756753 | MS.gene060227:CDS |
| TCAAAGAAATTATGTGGAGG+CGG | 0.554584 | 5.4:+59757239 | None:intergenic |
| ATCTTCATCGTTGATATCCA+TGG | 0.554841 | 5.4:+59757205 | None:intergenic |
| CCCATATGTTATGTATGCTA+GGG | 0.556719 | 5.4:-59756690 | MS.gene060227:CDS |
| ACTCGACATGACCGAGCTAA+CGG | 0.557804 | 5.4:-59757546 | MS.gene060227:CDS |
| CTCCAAGGGATCCAGTATCT+CGG | 0.558445 | 5.4:+59757478 | None:intergenic |
| TAGAAGACACAAGAGGTTCG+AGG | 0.561323 | 5.4:-59757712 | MS.gene060227:CDS |
| TGTGGCTAATAATGGGAGAG+TGG | 0.562385 | 5.4:-59757087 | MS.gene060227:CDS |
| TCCTTCCACTTGATCCTGCA+CGG | 0.565208 | 5.4:+59756824 | None:intergenic |
| TGCACCTCCTTCAACTCCTG+TGG | 0.569911 | 5.4:-59757366 | MS.gene060227:CDS |
| GGTGCAACATCAACATCCGC+TGG | 0.570592 | 5.4:+59757332 | None:intergenic |
| GTATAATTCATACTCCTCCA+AGG | 0.570762 | 5.4:+59757463 | None:intergenic |
| TTATGTATGCTAGGGAAGCT+CGG | 0.572454 | 5.4:-59756682 | MS.gene060227:CDS |
| GGCATCTGTAAGTAGGATGG+TGG | 0.575659 | 5.4:+59756862 | None:intergenic |
| CGTCTAAGTTACAACGGACA+GGG | 0.576116 | 5.4:-59757593 | MS.gene060227:CDS |
| GGTGAAAACATGGGTGCAGG+TGG | 0.578164 | 5.4:-59757113 | MS.gene060227:CDS |
| ACTTTCCGTGCAGGATCAAG+TGG | 0.580280 | 5.4:-59756829 | MS.gene060227:CDS |
| CATGGGTGCAGGTGGGAATG+TGG | 0.582106 | 5.4:-59757105 | MS.gene060227:CDS |
| CGGGTGGAAGAGATTTGTTA+CGG | 0.590170 | 5.4:-59756765 | MS.gene060227:CDS |
| GAAATGCCGCTGGAGGAAGA+TGG | 0.590786 | 5.4:+59756795 | None:intergenic |
| CCGAGCTAACGGTTCGTGAG+AGG | 0.592918 | 5.4:-59757535 | MS.gene060227:CDS |
| CCTCCAGCGGCATTTCTCAG+GGG | 0.594266 | 5.4:-59756788 | MS.gene060227:CDS |
| GGAGTTGAAGGAGGTGCAGG+AGG | 0.595751 | 5.4:+59757371 | None:intergenic |
| GGGTAACAATGGTGAAAACA+TGG | 0.597431 | 5.4:-59757123 | MS.gene060227:CDS |
| TGTGGCAGAACCGGATCCAG+CGG | 0.598738 | 5.4:-59757348 | MS.gene060227:CDS |
| CCCCTGAGAAATGCCGCTGG+AGG | 0.603022 | 5.4:+59756788 | None:intergenic |
| TCATGAACTTCGGGATGAGG+AGG | 0.603718 | 5.4:+59757302 | None:intergenic |
| CATGGCATCTGTAAGTAGGA+TGG | 0.604155 | 5.4:+59756859 | None:intergenic |
| GTGCAACAAATCTTCTTGGT+AGG | 0.604465 | 5.4:+59756909 | None:intergenic |
| TCGGCAGCAATCAGGAAAGG+AGG | 0.606699 | 5.4:+59757497 | None:intergenic |
| GCAGTATGAGACCTAACGGC+TGG | 0.608111 | 5.4:+59757615 | None:intergenic |
| AGCCCATGGCATCTGTAAGT+AGG | 0.608677 | 5.4:+59756855 | None:intergenic |
| CACAACAATCGATCCAGACA+AGG | 0.610416 | 5.4:-59758487 | MS.gene060227:intron |
| ATCTCGGCAGCAATCAGGAA+AGG | 0.610893 | 5.4:+59757494 | None:intergenic |
| ATCCTACTTACAGATGCCAT+GGG | 0.611432 | 5.4:-59756857 | MS.gene060227:CDS |
| TGTCAGACTTGCAGAATACA+TGG | 0.612787 | 5.4:-59757054 | MS.gene060227:CDS |
| GGATATCAACGATGAAGATG+TGG | 0.616665 | 5.4:-59757201 | MS.gene060227:CDS |
| TATAATTCATACTCCTCCAA+GGG | 0.616989 | 5.4:+59757464 | None:intergenic |
| GTATGAGACCTAACGGCTGG+TGG | 0.617542 | 5.4:+59757618 | None:intergenic |
| CGGCAGCAATCAGGAAAGGA+GGG | 0.618638 | 5.4:+59757498 | None:intergenic |
| AATGGTGAAAACATGGGTGC+AGG | 0.619307 | 5.4:-59757116 | MS.gene060227:CDS |
| CAGAGGCCATCTTCCTCCAG+CGG | 0.626292 | 5.4:-59756801 | MS.gene060227:CDS |
| GCATCTGTAAGTAGGATGGT+GGG | 0.632206 | 5.4:+59756863 | None:intergenic |
| GCACGGAAAGTCAAAGCCCA+TGG | 0.634938 | 5.4:+59756841 | None:intergenic |
| TCCGTGCAGGATCAAGTGGA+AGG | 0.637315 | 5.4:-59756825 | MS.gene060227:CDS |
| TGGGCATCATCGGCATTGTG+TGG | 0.641687 | 5.4:+59757266 | None:intergenic |
| GTCGTAGTTCATCACCAAAG+TGG | 0.648562 | 5.4:+59757747 | None:intergenic |
| AGACGCAGTATGAGACCTAA+CGG | 0.653534 | 5.4:+59757611 | None:intergenic |
| GCTGTTGCCATGGGTAACAA+TGG | 0.655928 | 5.4:-59757134 | MS.gene060227:CDS |
| GCAGCATCAAAGAAGTTATG+CGG | 0.656305 | 5.4:+59757158 | None:intergenic |
| GGACAGGGGCTGTTCTACAT+GGG | 0.657468 | 5.4:-59757578 | MS.gene060227:CDS |
| GAACTTCCTGAATGTAAGCG+CGG | 0.670661 | 5.4:+59758512 | None:intergenic |
| GTGAAAACATGGGTGCAGGT+GGG | 0.671071 | 5.4:-59757112 | MS.gene060227:CDS |
| GTTGTCTTCATCGGATGACG+AGG | 0.675992 | 5.4:+59757436 | None:intergenic |
| GCATCAAAGAAGTTATGCGG+AGG | 0.686757 | 5.4:+59757161 | None:intergenic |
| AGGATCAAGTGGAAGGACAG+AGG | 0.686964 | 5.4:-59756818 | MS.gene060227:CDS |
| GTCTGGTTAGAAGACACAAG+AGG | 0.687596 | 5.4:-59757719 | MS.gene060227:CDS |
| ATACTGCGTCTAAGTTACAA+CGG | 0.691908 | 5.4:-59757599 | MS.gene060227:CDS |
| AAATCAAAGAAATTATGTGG+AGG | 0.696121 | 5.4:+59757236 | None:intergenic |
| TCTGCCACAGGAGTTGAAGG+AGG | 0.696157 | 5.4:+59757362 | None:intergenic |
| TCTGTAAGTAGGATGGTGGG+CGG | 0.704271 | 5.4:+59756866 | None:intergenic |
| GTCTAAGTTACAACGGACAG+GGG | 0.730281 | 5.4:-59757592 | MS.gene060227:CDS |
| GGTAACAATGGTGAAAACAT+GGG | 0.742892 | 5.4:-59757122 | MS.gene060227:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTAAAAAAGAACAC+AGG | - | chr5.4:59757305-59757324 | MS.gene060227:CDS | 15.0% |
| !!! | AAATGATAACAATTTAAAAC+AGG | + | chr5.4:59758247-59758266 | None:intergenic | 15.0% |
| !!! | AATTACTGTTATATAGTTTT+TGG | - | chr5.4:59758206-59758225 | MS.gene060227:intron | 15.0% |
| ! | AAATCAAAGAAATTATGTGG+AGG | + | chr5.4:59757953-59757972 | None:intergenic | 25.0% |
| ! | AGTACACAAAATCTTAGATA+CGG | + | chr5.4:59756965-59756984 | None:intergenic | 25.0% |
| ! | GCAAAATCAAAGAAATTATG+TGG | + | chr5.4:59757956-59757975 | None:intergenic | 25.0% |
| !!! | CATTTGTTGTTACATGTTTA+AGG | - | chr5.4:59756852-59756871 | MS.gene060227:CDS | 25.0% |
| AAATATATTGCAGAGTGACA+AGG | + | chr5.4:59757048-59757067 | None:intergenic | 30.0% | |
| AGTACACATTATCGTAGATA+CGG | + | chr5.4:59757152-59757171 | None:intergenic | 30.0% | |
| ATTACAGAGTGACAAAAAAC+TGG | + | chr5.4:59757196-59757215 | None:intergenic | 30.0% | |
| TATAATTCATACTCCTCCAA+GGG | + | chr5.4:59757725-59757744 | None:intergenic | 30.0% | |
| TTACAGAGTGACAAAAAACT+GGG | + | chr5.4:59757195-59757214 | None:intergenic | 30.0% | |
| TTGTTACTAAACTTTGAGTG+TGG | - | chr5.4:59756749-59756768 | MS.gene060227:CDS | 30.0% | |
| AAAATCTACCGGATACCAAA+AGG | + | chr5.4:59756823-59756842 | None:intergenic | 35.0% | |
| AAATCTACCGGATACCAAAA+GGG | + | chr5.4:59756822-59756841 | None:intergenic | 35.0% | |
| AAGTGGTTGTTGAAGTATGA+TGG | + | chr5.4:59757425-59757444 | None:intergenic | 35.0% | |
| ACCCATATGTTATGTATGCT+AGG | - | chr5.4:59758495-59758514 | MS.gene060227:CDS | 35.0% | |
| ACTCCTTAGCCTATAGAAAA+AGG | + | chr5.4:59757534-59757553 | None:intergenic | 35.0% | |
| ATACTGCGTCTAAGTTACAA+CGG | - | chr5.4:59757587-59757606 | MS.gene060227:CDS | 35.0% | |
| ATCTTCATCGTTGATATCCA+TGG | + | chr5.4:59757984-59758003 | None:intergenic | 35.0% | |
| ATTACAGAGTGACAACAAAC+AGG | + | chr5.4:59757009-59757028 | None:intergenic | 35.0% | |
| CCCATATGTTATGTATGCTA+GGG | - | chr5.4:59758496-59758515 | MS.gene060227:CDS | 35.0% | |
| CCCTAGCATACATAACATAT+GGG | + | chr5.4:59758499-59758518 | None:intergenic | 35.0% | |
| GGTAACAATGGTGAAAACAT+GGG | - | chr5.4:59758064-59758083 | MS.gene060227:intron | 35.0% | |
| GTATAATTCATACTCCTCCA+AGG | + | chr5.4:59757726-59757745 | None:intergenic | 35.0% | |
| TCAAAGAAATTATGTGGAGG+CGG | + | chr5.4:59757950-59757969 | None:intergenic | 35.0% | |
| TCATACTTCAACAACCACTT+TGG | - | chr5.4:59757425-59757444 | MS.gene060227:CDS | 35.0% | |
| TCCCTAGCATACATAACATA+TGG | + | chr5.4:59758500-59758519 | None:intergenic | 35.0% | |
| TTCTTGTGTGTGCATAATAG+TGG | + | chr5.4:59756941-59756960 | None:intergenic | 35.0% | |
| TTGATTGGCATCATGAACTT+CGG | + | chr5.4:59757897-59757916 | None:intergenic | 35.0% | |
| TTTACAGAGTGACATCAAAC+TGG | + | chr5.4:59757234-59757253 | None:intergenic | 35.0% | |
| ! | GAAGTTGTCACTTGTAATGT+AGG | - | chr5.4:59757385-59757404 | MS.gene060227:CDS | 35.0% |
| ! | TTATTTTCCTGTCTCCCTTT+TGG | - | chr5.4:59756805-59756824 | MS.gene060227:CDS | 35.0% |
| AACATCAATGCCAAGATCGA+TGG | + | chr5.4:59757789-59757808 | None:intergenic | 40.0% | |
| AACCAACAACAAGGCAAACA+TGG | + | chr5.4:59757074-59757093 | None:intergenic | 40.0% | |
| AACGATGAAGATGTGGAAGA+TGG | - | chr5.4:59757992-59758011 | MS.gene060227:intron | 40.0% | |
| ACTCGTGCAACAAATCTTCT+TGG | + | chr5.4:59758284-59758303 | None:intergenic | 40.0% | |
| ATCCTACTTACAGATGCCAT+GGG | - | chr5.4:59758329-59758348 | MS.gene060227:intron | 40.0% | |
| ATGTTTGCCTTCTTGTTGGT+TGG | - | chr5.4:59756884-59756903 | MS.gene060227:CDS | 40.0% | |
| GACTATGTTTGCCTTCTTGT+TGG | - | chr5.4:59756880-59756899 | MS.gene060227:CDS | 40.0% | |
| GCAGCATCAAAGAAGTTATG+CGG | + | chr5.4:59758031-59758050 | None:intergenic | 40.0% | |
| GGATATCAACGATGAAGATG+TGG | - | chr5.4:59757985-59758004 | MS.gene060227:intron | 40.0% | |
| GGGTAACAATGGTGAAAACA+TGG | - | chr5.4:59758063-59758082 | MS.gene060227:intron | 40.0% | |
| GTCACTTGTAATGTAGGATG+AGG | - | chr5.4:59757391-59757410 | MS.gene060227:CDS | 40.0% | |
| GTGCAACAAATCTTCTTGGT+AGG | + | chr5.4:59758280-59758299 | None:intergenic | 40.0% | |
| GTGGGAATGTGGCTAATAAT+GGG | - | chr5.4:59758092-59758111 | MS.gene060227:intron | 40.0% | |
| TAAGACACACTTACCTTGTC+TGG | + | chr5.4:59756715-59756734 | None:intergenic | 40.0% | |
| TCATCATCCAACCAACAACA+AGG | + | chr5.4:59757083-59757102 | None:intergenic | 40.0% | |
| TCATCATCCAACCAACAAGA+AGG | + | chr5.4:59756894-59756913 | None:intergenic | 40.0% | |
| TGAAGCCATGCAAAATCTAC+CGG | + | chr5.4:59756834-59756853 | None:intergenic | 40.0% | |
| TGATTGGCATCATGAACTTC+GGG | + | chr5.4:59757896-59757915 | None:intergenic | 40.0% | |
| TGTCAGACTTGCAGAATACA+TGG | - | chr5.4:59758132-59758151 | MS.gene060227:intron | 40.0% | |
| TTATGTATGCTAGGGAAGCT+CGG | - | chr5.4:59758504-59758523 | MS.gene060227:CDS | 40.0% | |
| ! | GGACCTTTTTCTATAGGCTA+AGG | - | chr5.4:59757528-59757547 | MS.gene060227:CDS | 40.0% |
| ! | GGTGTTTTCATAGGAAGTGA+GGG | - | chr5.4:59757500-59757519 | MS.gene060227:CDS | 40.0% |
| ! | GTGTTTTCATAGGAAGTGAG+GGG | - | chr5.4:59757501-59757520 | MS.gene060227:CDS | 40.0% |
| ! | GTTTTCACCATTGTTACCCA+TGG | + | chr5.4:59758062-59758081 | None:intergenic | 40.0% |
| ! | TGGTGTTTTCATAGGAAGTG+AGG | - | chr5.4:59757499-59757518 | MS.gene060227:CDS | 40.0% |
| !! | AATTATGTGGAGGCGGATTT+TGG | + | chr5.4:59757943-59757962 | None:intergenic | 40.0% |
| !! | AGAGATTTGTTACGGAGAAC+CGG | - | chr5.4:59758429-59758448 | MS.gene060227:intron | 40.0% |
| !! | AGATTTGTTGCACGAGTGTT+TGG | - | chr5.4:59758287-59758306 | MS.gene060227:intron | 40.0% |
| !! | ATGTTTGCCTTGTTGTTGGT+TGG | - | chr5.4:59757073-59757092 | MS.gene060227:CDS | 40.0% |
| !! | ATTATGTGGAGGCGGATTTT+GGG | + | chr5.4:59757942-59757961 | None:intergenic | 40.0% |
| !! | GATTTGTTGCACGAGTGTTT+GGG | - | chr5.4:59758288-59758307 | MS.gene060227:intron | 40.0% |
| !!! | TCGAGGTTTGGTGTTTTCAT+AGG | - | chr5.4:59757491-59757510 | MS.gene060227:CDS | 40.0% |
| AATGGTGAAAACATGGGTGC+AGG | - | chr5.4:59758070-59758089 | MS.gene060227:intron | 45.0% | |
| AGACGCAGTATGAGACCTAA+CGG | + | chr5.4:59757578-59757597 | None:intergenic | 45.0% | |
| ATCGTCGTCGTTGTCTTCAT+CGG | + | chr5.4:59757762-59757781 | None:intergenic | 45.0% | |
| ATGAACTACGACACAGAGTC+TGG | - | chr5.4:59757450-59757469 | MS.gene060227:CDS | 45.0% | |
| CACAACAATCGATCCAGACA+AGG | - | chr5.4:59756699-59756718 | MS.gene060227:CDS | 45.0% | |
| CATCCTACTTACAGATGCCA+TGG | - | chr5.4:59758328-59758347 | MS.gene060227:intron | 45.0% | |
| CATGGCATCTGTAAGTAGGA+TGG | + | chr5.4:59758330-59758349 | None:intergenic | 45.0% | |
| CATGGTGAAGACTAGCAATC+TGG | - | chr5.4:59758150-59758169 | MS.gene060227:intron | 45.0% | |
| CGTCTAAGTTACAACGGACA+GGG | - | chr5.4:59757593-59757612 | MS.gene060227:CDS | 45.0% | |
| CTATAGGCTAAGGAGTTTGC+TGG | - | chr5.4:59757538-59757557 | MS.gene060227:CDS | 45.0% | |
| GAACTTCCTGAATGTAAGCG+CGG | + | chr5.4:59756677-59756696 | None:intergenic | 45.0% | |
| GACGATGATTCCATCGATCT+TGG | - | chr5.4:59757776-59757795 | MS.gene060227:CDS | 45.0% | |
| GCATCAAAGAAGTTATGCGG+AGG | + | chr5.4:59758028-59758047 | None:intergenic | 45.0% | |
| GCATCTGTAAGTAGGATGGT+GGG | + | chr5.4:59758326-59758345 | None:intergenic | 45.0% | |
| GGCATTGTGTGGTTGTTGAT+TGG | + | chr5.4:59757912-59757931 | None:intergenic | 45.0% | |
| GGTGGGAATGTGGCTAATAA+TGG | - | chr5.4:59758091-59758110 | MS.gene060227:intron | 45.0% | |
| GTCGTAGTTCATCACCAAAG+TGG | + | chr5.4:59757442-59757461 | None:intergenic | 45.0% | |
| GTCTAAGTTACAACGGACAG+GGG | - | chr5.4:59757594-59757613 | MS.gene060227:CDS | 45.0% | |
| GTCTGGTTAGAAGACACAAG+AGG | - | chr5.4:59757467-59757486 | MS.gene060227:CDS | 45.0% | |
| GTGAAGACTAGCAATCTGGT+AGG | - | chr5.4:59758154-59758173 | MS.gene060227:intron | 45.0% | |
| TAGAAGACACAAGAGGTTCG+AGG | - | chr5.4:59757474-59757493 | MS.gene060227:CDS | 45.0% | |
| ! | GACCATGTTTGCCTTGTTGT+TGG | - | chr5.4:59757069-59757088 | MS.gene060227:CDS | 45.0% |
| ! | GGTATCCGGTAGATTTTGCA+TGG | - | chr5.4:59756826-59756845 | MS.gene060227:CDS | 45.0% |
| ! | TGTGGCTAATAATGGGAGAG+TGG | - | chr5.4:59758099-59758118 | MS.gene060227:intron | 45.0% |
| !! | CGGGTGGAAGAGATTTGTTA+CGG | - | chr5.4:59758421-59758440 | MS.gene060227:intron | 45.0% |
| !! | CTTTGATTTTGCTGCTGCCA+TGG | - | chr5.4:59757964-59757983 | MS.gene060227:intron | 45.0% |
| !! | TGGCAGTTGGGAAAAGTGTT+AGG | - | chr5.4:59758453-59758472 | MS.gene060227:intron | 45.0% |
| ACATCAACATCCGCTGGATC+CGG | + | chr5.4:59757851-59757870 | None:intergenic | 50.0% | |
| ACTCGACATGACCGAGCTAA+CGG | - | chr5.4:59757640-59757659 | MS.gene060227:CDS | 50.0% | |
| ACTTTCCGTGCAGGATCAAG+TGG | - | chr5.4:59758357-59758376 | MS.gene060227:intron | 50.0% | |
| AGCCCATGGCATCTGTAAGT+AGG | + | chr5.4:59758334-59758353 | None:intergenic | 50.0% | |
| AGGATCAAGTGGAAGGACAG+AGG | - | chr5.4:59758368-59758387 | MS.gene060227:intron | 50.0% | |
| ATCTCGGCAGCAATCAGGAA+AGG | + | chr5.4:59757695-59757714 | None:intergenic | 50.0% | |
| CTCCAAGGGATCCAGTATCT+CGG | + | chr5.4:59757711-59757730 | None:intergenic | 50.0% | |
| GACACAAGAGGTTCGAGGTT+TGG | - | chr5.4:59757479-59757498 | MS.gene060227:CDS | 50.0% | |
| GCATCATGAACTTCGGGATG+AGG | + | chr5.4:59757890-59757909 | None:intergenic | 50.0% | |
| GCGTCTAAGTTACAACGGAC+AGG | - | chr5.4:59757592-59757611 | MS.gene060227:CDS | 50.0% | |
| GCTGTTGCCATGGGTAACAA+TGG | - | chr5.4:59758052-59758071 | MS.gene060227:intron | 50.0% | |
| GGCATCTGTAAGTAGGATGG+TGG | + | chr5.4:59758327-59758346 | None:intergenic | 50.0% | |
| GTGAAAACATGGGTGCAGGT+GGG | - | chr5.4:59758074-59758093 | MS.gene060227:intron | 50.0% | |
| GTTGTCTTCATCGGATGACG+AGG | + | chr5.4:59757753-59757772 | None:intergenic | 50.0% | |
| TCATGAACTTCGGGATGAGG+AGG | + | chr5.4:59757887-59757906 | None:intergenic | 50.0% | |
| TCCTTCCACTTGATCCTGCA+CGG | + | chr5.4:59758365-59758384 | None:intergenic | 50.0% | |
| TCGGGATGAGGAGGAGAATT+GGG | + | chr5.4:59757878-59757897 | None:intergenic | 50.0% | |
| TTCAACTCCTGTGGCAGAAC+CGG | - | chr5.4:59757829-59757848 | MS.gene060227:intron | 50.0% | |
| TTCGGGATGAGGAGGAGAAT+TGG | + | chr5.4:59757879-59757898 | None:intergenic | 50.0% | |
| ! | ATTTGTTACGGAGAACCGGC+TGG | - | chr5.4:59758433-59758452 | MS.gene060227:intron | 50.0% |
| ! | CCTGTCTCCCTTTTGGTATC+CGG | - | chr5.4:59756812-59756831 | MS.gene060227:CDS | 50.0% |
| ! | GGACGCGGACCTTTTTCTAT+AGG | - | chr5.4:59757522-59757541 | MS.gene060227:CDS | 50.0% |
| !! | AGGCGGATTTTGGGCATCAT+CGG | + | chr5.4:59757933-59757952 | None:intergenic | 50.0% |
| !! | TCTGTAAGTAGGATGGTGGG+CGG | + | chr5.4:59758323-59758342 | None:intergenic | 50.0% |
| CCAGTATCTCGGCAGCAATC+AGG | + | chr5.4:59757700-59757719 | None:intergenic | 55.0% | |
| CCGGATACCAAAAGGGAGAC+AGG | + | chr5.4:59756815-59756834 | None:intergenic | 55.0% | |
| CCTCTCACGAACCGTTAGCT+CGG | + | chr5.4:59757654-59757673 | None:intergenic | 55.0% | |
| CCTGATTGCTGCCGAGATAC+TGG | - | chr5.4:59757697-59757716 | MS.gene060227:CDS | 55.0% | |
| CGAGATACTGGATCCCTTGG+AGG | - | chr5.4:59757709-59757728 | MS.gene060227:CDS | 55.0% | |
| CGGCAGCAATCAGGAAAGGA+GGG | + | chr5.4:59757691-59757710 | None:intergenic | 55.0% | |
| GAAATGCCGCTGGAGGAAGA+TGG | + | chr5.4:59758394-59758413 | None:intergenic | 55.0% | |
| GATGCTGCTGCTGTTGCCAT+GGG | - | chr5.4:59758043-59758062 | MS.gene060227:intron | 55.0% | |
| GCACGGAAAGTCAAAGCCCA+TGG | + | chr5.4:59758348-59758367 | None:intergenic | 55.0% | |
| GCAGTATGAGACCTAACGGC+TGG | + | chr5.4:59757574-59757593 | None:intergenic | 55.0% | |
| GGACAGGGGCTGTTCTACAT+GGG | - | chr5.4:59757608-59757627 | MS.gene060227:CDS | 55.0% | |
| GGTGAAAACATGGGTGCAGG+TGG | - | chr5.4:59758073-59758092 | MS.gene060227:intron | 55.0% | |
| GGTGCAACATCAACATCCGC+TGG | + | chr5.4:59757857-59757876 | None:intergenic | 55.0% | |
| GGTTCTGCCACAGGAGTTGA+AGG | + | chr5.4:59757830-59757849 | None:intergenic | 55.0% | |
| GTATGAGACCTAACGGCTGG+TGG | + | chr5.4:59757571-59757590 | None:intergenic | 55.0% | |
| GTATGCTAGGGAAGCTCGGA+TGG | - | chr5.4:59758508-59758527 | MS.gene060227:CDS | 55.0% | |
| TCATAGGAAGTGAGGGGACG+CGG | - | chr5.4:59757507-59757526 | MS.gene060227:CDS | 55.0% | |
| TCCGTGCAGGATCAAGTGGA+AGG | - | chr5.4:59758361-59758380 | MS.gene060227:intron | 55.0% | |
| TCCTCCAGCGGCATTTCTCA+GGG | - | chr5.4:59758397-59758416 | MS.gene060227:intron | 55.0% | |
| TCGGCAGCAATCAGGAAAGG+AGG | + | chr5.4:59757692-59757711 | None:intergenic | 55.0% | |
| TCTGCCACAGGAGTTGAAGG+AGG | + | chr5.4:59757827-59757846 | None:intergenic | 55.0% | |
| TGATGCTGCTGCTGTTGCCA+TGG | - | chr5.4:59758042-59758061 | MS.gene060227:intron | 55.0% | |
| TGCACCTCCTTCAACTCCTG+TGG | - | chr5.4:59757820-59757839 | MS.gene060227:intron | 55.0% | |
| TGCCGAGATACTGGATCCCT+TGG | - | chr5.4:59757706-59757725 | MS.gene060227:CDS | 55.0% | |
| TGGGCATCATCGGCATTGTG+TGG | + | chr5.4:59757923-59757942 | None:intergenic | 55.0% | |
| TTCCTCCAGCGGCATTTCTC+AGG | - | chr5.4:59758396-59758415 | MS.gene060227:intron | 55.0% | |
| ! | ACAGGAGTTGAAGGAGGTGC+AGG | + | chr5.4:59757821-59757840 | None:intergenic | 55.0% |
| ! | CACTTTTCCCAACTGCCAGC+CGG | + | chr5.4:59758451-59758470 | None:intergenic | 55.0% |
| ! | TGGGCTTTGACTTTCCGTGC+AGG | - | chr5.4:59758348-59758367 | MS.gene060227:intron | 55.0% |
| CAGAGGCCATCTTCCTCCAG+CGG | - | chr5.4:59758385-59758404 | MS.gene060227:intron | 60.0% | |
| CATGGGTGCAGGTGGGAATG+TGG | - | chr5.4:59758081-59758100 | MS.gene060227:intron | 60.0% | |
| CCGAGCTAACGGTTCGTGAG+AGG | - | chr5.4:59757651-59757670 | MS.gene060227:CDS | 60.0% | |
| CCTCCAGCGGCATTTCTCAG+GGG | - | chr5.4:59758398-59758417 | MS.gene060227:intron | 60.0% | |
| CGGACAGGGGCTGTTCTACA+TGG | - | chr5.4:59757607-59757626 | MS.gene060227:CDS | 60.0% | |
| GAGCACTTCCACCAGCCGTT+AGG | - | chr5.4:59757560-59757579 | MS.gene060227:CDS | 60.0% | |
| TGTGGCAGAACCGGATCCAG+CGG | - | chr5.4:59757838-59757857 | MS.gene060227:intron | 60.0% | |
| ! | GGAGTTGAAGGAGGTGCAGG+AGG | + | chr5.4:59757818-59757837 | None:intergenic | 60.0% |
| ACGGAGAACCGGCTGGCAGT+TGG | - | chr5.4:59758440-59758459 | MS.gene060227:intron | 65.0% | |
| CAGCGGCATTTCTCAGGGGC+GGG | - | chr5.4:59758402-59758421 | MS.gene060227:intron | 65.0% | |
| CCAGCGGCATTTCTCAGGGG+CGG | - | chr5.4:59758401-59758420 | MS.gene060227:intron | 65.0% | |
| CCCCTGAGAAATGCCGCTGG+AGG | + | chr5.4:59758401-59758420 | None:intergenic | 65.0% | |
| CGGAGAACCGGCTGGCAGTT+GGG | - | chr5.4:59758441-59758460 | MS.gene060227:intron | 65.0% | |
| GCTGGATCCGGTTCTGCCAC+AGG | + | chr5.4:59757839-59757858 | None:intergenic | 65.0% | |
| CCGCCCCTGAGAAATGCCGC+TGG | + | chr5.4:59758404-59758423 | None:intergenic | 70.0% | |
| CGGCATTTCTCAGGGGCGGG+TGG | - | chr5.4:59758405-59758424 | MS.gene060227:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 59756670 | 59758538 | 59756670 | ID=MS.gene060227 |
| chr5.4 | mRNA | 59756670 | 59758538 | 59756670 | ID=MS.gene060227.t1;Parent=MS.gene060227 |
| chr5.4 | exon | 59758488 | 59758538 | 59758488 | ID=MS.gene060227.t1.exon1;Parent=MS.gene060227.t1 |
| chr5.4 | CDS | 59758488 | 59758538 | 59758488 | ID=cds.MS.gene060227.t1;Parent=MS.gene060227.t1 |
| chr5.4 | exon | 59757037 | 59757801 | 59757037 | ID=MS.gene060227.t1.exon2;Parent=MS.gene060227.t1 |
| chr5.4 | CDS | 59757037 | 59757801 | 59757037 | ID=cds.MS.gene060227.t1;Parent=MS.gene060227.t1 |
| chr5.4 | exon | 59756670 | 59756933 | 59756670 | ID=MS.gene060227.t1.exon3;Parent=MS.gene060227.t1 |
| chr5.4 | CDS | 59756670 | 59756933 | 59756670 | ID=cds.MS.gene060227.t1;Parent=MS.gene060227.t1 |
| Gene Sequence |
| Protein sequence |
