AlfalfaGEDB | MS.gene060411

M. sativa cultivar XinJiangDaYe / MS.gene060411

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060411.t1	XP_003594940.1	84.9	345	42	2	1	342	49	386	7.80E-167	596.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060411.t1	P93604	43.3	289	154	7	47	329	339	623	1.1e-52	208.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060411.t1	A2Q1L7	84.9	345	42	2	1	342	49	386	5.6e-167	596.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060411.t1	MTR_2g036480	85.124	363	44	2	1	360	49	404	0.0	640
MS.gene060411.t1	MTR_2g036490	62.530	411	113	3	1	381	67	466	1.80e-180	509
MS.gene060411.t1	MTR_2g036460	61.557	411	116	5	1	381	78	476	5.96e-174	493
MS.gene060411.t1	MTR_2g036440	48.883	358	165	8	1	356	40	381	1.06e-104	315
MS.gene060411.t1	MTR_2g036500	48.883	358	165	8	1	356	39	380	4.00e-104	313
MS.gene060411.t1	MTR_2g036430	41.689	379	185	9	9	381	47	395	1.66e-90	278
MS.gene060411.t1	MTR_1g027460	38.838	327	185	6	41	357	20	341	1.47e-74	236
MS.gene060411.t1	MTR_1g027250	39.860	286	166	3	47	330	3	284	2.07e-70	224
MS.gene060411.t1	MTR_1g027160	38.318	321	185	6	47	360	3	317	2.59e-70	224
MS.gene060411.t1	MTR_1g026990	38.318	321	185	6	47	360	3	317	2.64e-70	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060411.t1	AT5G24080	40.064	312	168	8	22	329	388	684	3.81e-58	201
MS.gene060411.t1	AT5G24080	40.064	312	168	8	22	329	388	684	3.81e-58	201
MS.gene060411.t1	AT5G24080	40.064	312	168	8	22	329	515	811	9.98e-58	202
MS.gene060411.t1	AT4G32300	36.842	323	184	10	11	329	468	774	3.63e-57	200
MS.gene060411.t1	AT1G66980	38.408	289	158	8	52	329	793	1072	4.75e-56	198
MS.gene060411.t1	AT1G66980	38.408	289	158	8	52	329	810	1089	5.15e-56	198
MS.gene060411.t1	AT1G66980	38.408	289	158	8	52	329	839	1118	6.03e-56	198
MS.gene060411.t1	AT5G38240	34.524	336	197	9	26	357	260	576	6.10e-56	193
MS.gene060411.t1	AT1G66980	38.408	289	158	8	52	329	837	1116	7.22e-56	198
MS.gene060411.t1	AT5G38280	35.333	300	178	10	41	329	321	615	1.13e-55	194

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Find 57 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAATTCGACACAAGA+GGG	0.572779	2.1:-53743785	MS.gene060411:CDS
AAATGTGATGTTTATAGTTT+TGG	0.244726	2.1:-53744115	MS.gene060411:CDS
AAGAAAATTCGACACAAGAG+GGG	0.637668	2.1:-53743784	MS.gene060411:CDS
AAGCTTCGTGAGATTGCGAT+TGG	0.499770	2.1:-53744367	MS.gene060411:CDS
AATCAAATATCTTCAAAAGC+TGG	0.497699	2.1:-53744760	MS.gene060411:CDS
AATCCAATATTAGCTAACTT+TGG	0.480707	2.1:+53744244	None:intergenic
AATGTTTGAGAATAATGAAT+TGG	0.409015	2.1:-53743999	MS.gene060411:CDS
ACAAAATCTTTGAGGGAATT+TGG	0.137985	2.1:-53743722	MS.gene060411:CDS
ACATCACATTTATATGTTTC+CGG	0.210921	2.1:+53744127	None:intergenic
ACCCGATCATGGAAGGGAAA+TGG	0.423306	2.1:+53743815	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAATTCGACACAAGA+GGG	-	chr2.1:53744690-53744709	MS.gene060411:CDS	30.0%
AGACAACAAAAAACCTTGTT+AGG	-	chr2.1:53743814-53743833	MS.gene060411:CDS	30.0%
ATGGCATACAAAATCTTTGA+GGG	-	chr2.1:53744746-53744765	MS.gene060411:CDS	30.0%
GGGTGAAAAAGAAATTATAC+AGG	-	chr2.1:53744635-53744654	MS.gene060411:CDS	30.0%
GTACCAAAGTTAGCTAATAT+TGG	-	chr2.1:53744228-53744247	MS.gene060411:CDS	30.0%
TAAAGAAAATTCGACACAAG+AGG	-	chr2.1:53744689-53744708	MS.gene060411:CDS	30.0%
TGATTATCTTTCTCTATGGT+TGG	+	chr2.1:53743700-53743719	None:intergenic	30.0%
TTGGTTATCAAAAAGGACAT+GGG	-	chr2.1:53744452-53744471	MS.gene060411:CDS	30.0%
TTTGGTTATCAAAAAGGACA+TGG	-	chr2.1:53744451-53744470	MS.gene060411:CDS	30.0%
AAGAAAATTCGACACAAGAG+GGG	-	chr2.1:53744691-53744710	MS.gene060411:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	53743676	53744821	53743676	ID=MS.gene060411
chr2.1	mRNA	53743676	53744821	53743676	ID=MS.gene060411.t1;Parent=MS.gene060411
chr2.1	exon	53743676	53744821	53743676	ID=MS.gene060411.t1.exon1;Parent=MS.gene060411.t1
chr2.1	CDS	53743676	53744821	53743676	ID=cds.MS.gene060411.t1;Parent=MS.gene060411.t1

Gene Sequence

>MS.gene060411

ATGTCTGCTTACACTAAGATTCCAACCATAGAGAAAGATAATCAAATATCTTCAAAAGCTGGTGATTTTCCAATCAGATTCACACCAGAACAACTTAATGAAATTACAAATAAGTGCAACTTCTCTTTTGATAAGATAAGACAACAAAAAACCTTGTTAGGTCATAGTGCTGCTGGAACTGACTTCAAAGGAGAATTATCAAATGGAGAAAAAGTTGCAGTCAAAGATTTCCACTGTTTTCAAATGGGAATGGAAGAACAATTCATAGCAGATGTCAGCACAATTGCAAGAATTCATCATATCAATATAGTCAAAGTTTATGGATTCTGCCTTCACCGTGATAAAAACGCACTTGTTTATGAGTATGTTGAAAATGGTTCTCTAGCCAAGTATTTATTCGACAGCAAGAACCGCGATGAGTTAGGTTTTGAAAAGCTTCGTGAGATTGCGATTGGAATAGCTAAAGGAATTTCTTATTTACATGAGGAATGTGAATATAGAATAATTCATTATGATATTAGACCTACAAATATTCTTCTTGACAAGGAATTTGTACCAAAGTTAGCTAATATTGGATTGTCAAAGCTTCAAAGTAGAGAAAGTCACATTGCAATGAATAATCGTTTTAAAGGAAAAGCAGCTTATGCAGCACCTGAAATGTGGAAGGCTTATCCGGAAACATATAAATGTGATGTTTATAGTTTTGGTATTCTTCTATTTGAAATTGTAGGGAGAAGAACGCGTTTTATTGATCCTAGATATAGTGAATCACAAATTTGGTTATCAAAAAGGACATGGGAAATGTTTGAGAATAATGAATTGGTTGCTATGCTTGAACTTTGCGGAATTGAAGAGAAATATAATGAGAGAGCTGAGGCAATGTTAAAGGTTGCTCAATGGTGTGTTCAATATTCACCAGATGATAGACCTCTAATGAGTACTGTTGTGAAGATGTTGGAGGGTGAAAAAGAAATTATACAGGCTCCATTTCCCTTCCATGATCGGGTTTCGGCTAAAGAAAATTCGACACAAGAGGGGAGCACTGCAGATTCTGATACTGCTACTTCATCATGGCATACAAAATCTTTGAGGGAATTTGGTTTCAGAGCCAAACAAAATACATTTCAGATTGAAAAAACTACTTAG

Protein sequence

>MS.gene060411.t1

MSAYTKIPTIEKDNQISSKAGDFPIRFTPEQLNEITNKCNFSFDKIRQQKTLLGHSAAGTDFKGELSNGEKVAVKDFHCFQMGMEEQFIADVSTIARIHHINIVKVYGFCLHRDKNALVYEYVENGSLAKYLFDSKNRDELGFEKLREIAIGIAKGISYLHEECEYRIIHYDIRPTNILLDKEFVPKLANIGLSKLQSRESHIAMNNRFKGKAAYAAPEMWKAYPETYKCDVYSFGILLFEIVGRRTRFIDPRYSESQIWLSKRTWEMFENNELVAMLELCGIEEKYNERAEAMLKVAQWCVQYSPDDRPLMSTVVKMLEGEKEIIQAPFPFHDRVSAKENSTQEGSTADSDTATSSWHTKSLREFGFRAKQNTFQIEKTT