AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060449

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060449.t1 MTR_0250s0040 77.742 310 24 2 1 310 1 265 3.72e-174 483
MS.gene060449.t1 MTR_6g047570 71.207 323 71 5 1 310 23 336 2.84e-156 440
MS.gene060449.t1 MTR_0011s0260 65.487 339 85 6 1 309 23 359 5.93e-134 384
MS.gene060449.t1 MTR_0011s0210 64.706 340 88 6 1 310 23 360 8.09e-132 379
MS.gene060449.t1 MTR_4g066460 63.354 322 90 8 1 310 24 329 3.71e-129 371
MS.gene060449.t1 MTR_4g067010 63.376 314 89 8 1 307 24 318 7.25e-128 368
MS.gene060449.t1 MTR_4g066380 60.615 325 86 7 1 307 23 323 1.03e-111 327
MS.gene060449.t1 MTR_0246s0020 50.685 365 116 10 1 310 24 379 2.12e-99 297
MS.gene060449.t1 MTR_0246s0020 47.339 357 122 11 1 302 24 369 5.65e-85 260
MS.gene060449.t1 MTR_6g047550 63.436 227 47 6 1 200 23 240 3.25e-79 242
MS.gene060449.t1 MTR_0246s0050 44.898 343 132 13 1 310 3 321 2.26e-73 229
MS.gene060449.t1 MTR_4g098035 44.737 342 134 12 1 310 24 342 4.40e-73 229
MS.gene060449.t1 MTR_5g014520 44.051 311 154 6 9 309 33 333 4.13e-62 200
MS.gene060449.t1 MTR_5g014560 40.514 311 139 9 9 309 33 307 1.51e-59 193
MS.gene060449.t1 MTR_2g010450 44.498 209 98 4 110 307 151 352 3.89e-50 170
MS.gene060449.t1 MTR_5g014600 36.688 308 167 9 26 305 27 334 3.09e-48 164
MS.gene060449.t1 MTR_4g009540 44.595 222 102 8 102 306 114 331 1.40e-47 162
MS.gene060449.t1 MTR_4g097940 37.868 272 154 6 41 300 52 320 1.93e-46 159
MS.gene060449.t1 MTR_4g097920 35.294 272 161 5 41 300 37 305 2.12e-44 154
MS.gene060449.t1 MTR_4g097920 35.294 272 161 5 41 300 52 320 4.19e-44 153
MS.gene060449.t1 MTR_4g009110 40.889 225 110 7 102 306 129 350 1.79e-43 152
MS.gene060449.t1 MTR_4g092700 43.915 189 94 3 125 307 150 332 1.45e-42 149
MS.gene060449.t1 MTR_8g009020 46.369 179 85 4 132 301 142 318 4.04e-42 148
MS.gene060449.t1 MTR_4g097950 45.361 194 93 4 124 307 61 251 7.94e-41 142
MS.gene060449.t1 MTR_4g009540 44.776 201 90 8 102 285 114 310 9.60e-41 144
MS.gene060449.t1 MTR_7g080780 41.262 206 112 2 101 306 120 316 1.95e-40 144
MS.gene060449.t1 MTR_7g080780 41.262 206 112 2 101 306 133 329 2.21e-40 144
MS.gene060449.t1 MTR_5g014640 43.503 177 95 3 130 305 151 323 2.33e-39 141
MS.gene060449.t1 MTR_2g104490 41.711 187 103 4 116 300 120 302 1.69e-38 138
MS.gene060449.t1 MTR_2g104550 40.609 197 112 3 116 309 121 315 5.82e-38 137
MS.gene060449.t1 MTR_2g104650 40.265 226 112 5 89 304 55 267 3.50e-36 131
MS.gene060449.t1 MTR_2g104560 40.449 178 96 3 134 307 55 226 1.26e-34 126
MS.gene060449.t1 MTR_2g104490 40.462 173 97 4 115 285 119 287 4.00e-32 121
MS.gene060449.t1 MTR_8g009010 42.105 171 62 3 132 301 133 267 4.92e-32 121
MS.gene060449.t1 MTR_8g069740 39.429 175 101 3 114 284 92 265 5.31e-31 117
MS.gene060449.t1 MTR_2g104530 33.197 244 128 6 67 301 52 269 1.32e-29 114
MS.gene060449.t1 MTR_2g104590 34.272 213 100 6 110 304 32 222 4.64e-29 111
MS.gene060449.t1 MTR_2g104500 37.079 178 99 3 133 306 104 272 2.10e-27 108
MS.gene060449.t1 MTR_5g014550 47.619 126 58 3 163 284 54 175 4.57e-27 105
MS.gene060449.t1 MTR_4g009420 34.839 155 69 3 156 303 65 194 3.42e-23 95.1
MS.gene060449.t1 MTR_7g451650 36.129 155 75 4 156 303 57 194 4.07e-23 94.7
MS.gene060449.t1 MTR_4g009510 33.929 168 87 4 143 303 52 202 1.14e-21 91.3
MS.gene060449.t1 MTR_7g050350 35.570 149 72 4 162 303 1 132 1.56e-21 89.0
MS.gene060449.t1 MTR_7g451650 35.570 149 72 4 162 303 1 132 1.56e-21 89.0
MS.gene060449.t1 MTR_8g067280 32.432 185 105 5 112 277 434 617 3.94e-17 82.0
MS.gene060449.t1 MTR_1g072320 28.834 163 98 4 119 266 452 611 1.48e-15 77.4
MS.gene060449.t1 MTR_5g030430 29.944 177 104 5 119 277 474 648 7.88e-15 75.5
MS.gene060449.t1 MTR_3g498695 26.263 198 130 3 112 296 277 471 9.78e-15 74.7
MS.gene060449.t1 MTR_8g024770 31.933 119 67 3 133 242 279 392 1.57e-14 73.9
MS.gene060449.t1 MTR_8g024790 29.586 169 90 5 115 262 263 423 2.98e-14 73.2
MS.gene060449.t1 MTR_3g498695 26.263 198 129 4 112 296 277 470 6.97e-14 72.4
MS.gene060449.t1 MTR_7g451650 32.847 137 68 4 156 285 57 176 1.66e-13 68.2
MS.gene060449.t1 MTR_4g009420 31.387 137 62 3 156 285 65 176 3.16e-13 67.8
MS.gene060449.t1 MTR_8g098275 42.466 73 42 0 125 197 393 465 7.35e-13 69.3
MS.gene060449.t1 MTR_8g098275 42.466 73 42 0 125 197 300 372 7.94e-13 68.9
MS.gene060449.t1 MTR_8g027495 46.154 65 35 0 133 197 458 522 8.43e-13 69.3
MS.gene060449.t1 MTR_8g098275 42.466 73 42 0 125 197 236 308 9.25e-13 68.9
MS.gene060449.t1 MTR_3g030700 28.235 170 117 2 120 284 183 352 1.83e-12 67.8
MS.gene060449.t1 MTR_7g117670 29.861 144 93 3 133 276 402 537 2.00e-12 68.2
MS.gene060449.t1 MTR_7g096350 30.573 157 83 6 56 186 252 408 2.62e-12 67.4
MS.gene060449.t1 MTR_1g112680 26.738 187 106 5 114 269 295 481 1.07e-11 65.9
MS.gene060449.t1 MTR_8g064700 25.000 156 106 3 135 282 246 398 6.46e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060449.t1 AT2G22760 44.792 192 93 6 124 303 103 293 3.20e-46 158
MS.gene060449.t1 AT4G37850 42.647 204 102 5 116 307 127 327 6.66e-45 155
MS.gene060449.t1 AT4G37850 42.647 204 102 5 116 307 127 327 6.66e-45 155
MS.gene060449.t1 AT2G22750 45.455 198 99 4 117 308 111 305 6.50e-40 142
MS.gene060449.t1 AT2G22750 45.455 198 99 4 117 308 135 329 7.01e-40 142
MS.gene060449.t1 AT2G22750 45.455 198 99 4 117 308 139 333 7.74e-40 142
MS.gene060449.t1 AT2G22750 45.455 198 98 5 117 308 111 304 1.69e-38 138
MS.gene060449.t1 AT2G22750 45.455 198 98 5 117 308 139 332 2.12e-38 139
MS.gene060449.t1 AT2G22760 43.353 173 86 5 124 285 103 274 2.53e-38 137
MS.gene060449.t1 AT2G22770 38.009 221 109 5 110 303 98 317 4.81e-36 132
MS.gene060449.t1 AT4G17880 32.727 165 104 4 119 277 397 560 1.65e-16 80.5
MS.gene060449.t1 AT1G32640 29.936 157 96 3 133 284 452 599 3.02e-16 79.7
MS.gene060449.t1 AT5G46760 29.189 185 114 7 119 290 396 576 4.53e-15 75.9
MS.gene060449.t1 AT1G63650 29.586 169 96 5 133 281 405 570 2.28e-14 73.9
MS.gene060449.t1 AT1G63650 29.586 169 96 5 133 281 405 570 2.28e-14 73.9
MS.gene060449.t1 AT1G63650 29.586 169 96 5 133 281 405 570 2.28e-14 73.9
MS.gene060449.t1 AT5G41315 28.161 174 97 4 133 281 446 616 2.39e-13 70.9
MS.gene060449.t1 AT5G41315 28.161 174 97 4 133 281 449 619 2.44e-13 70.9
MS.gene060449.t1 AT5G41315 28.161 174 97 4 133 281 441 611 2.50e-13 70.9
MS.gene060449.t1 AT4G16430 40.244 82 44 1 117 193 299 380 1.53e-12 68.2
MS.gene060449.t1 AT3G26744 29.091 165 107 2 134 288 308 472 1.88e-12 68.2
MS.gene060449.t1 AT3G26744 29.091 165 107 2 134 288 308 472 1.88e-12 68.2
MS.gene060449.t1 AT3G26744 29.091 165 107 2 134 288 308 472 1.88e-12 68.2
MS.gene060449.t1 AT2G46510 41.772 79 41 2 119 192 376 454 2.04e-12 68.2
MS.gene060449.t1 AT1G01260 29.870 154 101 3 74 227 378 524 2.25e-12 67.8
MS.gene060449.t1 AT1G01260 29.870 154 101 3 74 227 378 524 2.25e-12 67.8
MS.gene060449.t1 AT1G01260 29.870 154 101 3 74 227 378 524 2.25e-12 67.8
MS.gene060449.t1 AT3G26744 28.846 156 101 2 134 279 308 463 1.34e-11 65.5
MS.gene060449.t1 AT1G12860 29.240 171 114 4 134 298 268 437 1.52e-11 65.1
MS.gene060449.t1 AT1G12860 30.263 152 100 3 134 279 268 419 2.98e-11 64.3

Find 46 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTTGTAGTGGATGAATT+TGG 0.179475 7.1:-66947332 None:intergenic
CAAGTGGAAGCAAGAGTCTT+AGG 0.227099 7.1:+66948443 MS.gene060449:CDS
CCCGAATTTCCTTATAGATT+TGG 0.259158 7.1:+66947118 MS.gene060449:CDS
TCTTATTCCTAACCTTAAAA+AGG 0.267726 7.1:+66947544 MS.gene060449:CDS
TCCAAATCTATAAGGAAATT+CGG 0.272428 7.1:-66947119 None:intergenic
AATAGTAGTGTCTTACCTTT+TGG 0.280739 7.1:+66948560 MS.gene060449:CDS
AATTTGTAGTGGATGAATTT+GGG 0.291366 7.1:-66947331 None:intergenic
ACAAATTCCTTACAATTTAG+TGG 0.309622 7.1:+66947347 MS.gene060449:CDS
GATGAGTTAGAAGAAAGTTT+TGG 0.345146 7.1:-66947275 None:intergenic
CAGAAGAGTCATCGAGAAAA+AGG 0.350658 7.1:+66947435 MS.gene060449:CDS
TTCAAATCCACTAAATTGTA+AGG 0.351709 7.1:-66947354 None:intergenic
GGGGCTTATAGTTAAAATTA+TGG 0.355304 7.1:+66948505 MS.gene060449:CDS
ATCAACAGTGTTTGACTTCA+AGG 0.362949 7.1:+66947189 MS.gene060449:CDS
GAAGCTCTTCCAAATCTATA+AGG 0.363733 7.1:-66947127 None:intergenic
CCAAATCTATAAGGAAATTC+GGG 0.373199 7.1:-66947118 None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG 0.394913 7.1:-66948437 None:intergenic
ACCAGTGTCTCCAACTGAAA+TGG 0.420736 7.1:+66947385 MS.gene060449:CDS
GAGAGCCTTCATAGTGTTGT+TGG 0.422784 7.1:+66948410 MS.gene060449:CDS
TAGGGAAATATATGTTGATT+CGG 0.438258 7.1:+66948462 MS.gene060449:CDS
ATCACTATAAATGCCTGGTT+TGG 0.451938 7.1:-66948366 None:intergenic
AAGTGGAAGCAAGAGTCTTA+GGG 0.455524 7.1:+66948444 MS.gene060449:CDS
AGGCTACAACATGAACATAA+AGG 0.462195 7.1:+66949141 MS.gene060449:CDS
TCCATTTCAGTTGGAGACAC+TGG 0.482760 7.1:-66947386 None:intergenic
GGTCTCTACCTGAGCAATGA+TGG 0.507552 7.1:-66948603 None:intergenic
AAAAGGTCTCGTGGTAATCA+TGG 0.510954 7.1:+66947452 MS.gene060449:CDS
CAAGTGGTTGTGACCAAACC+AGG 0.515887 7.1:+66948353 MS.gene060449:CDS
GGATCCAATGCAAAGAGCAC+AGG 0.517019 7.1:+66948483 MS.gene060449:CDS
AAATTATGGTCGAAATTCAA+AGG 0.523147 7.1:+66948519 MS.gene060449:CDS
CGACGTGACCATCATTGCTC+AGG 0.526856 7.1:+66948595 MS.gene060449:CDS
TTGTCATCACTATAAATGCC+TGG 0.527391 7.1:-66948371 None:intergenic
GTAAACCAACAACACTATGA+AGG 0.536411 7.1:-66948415 None:intergenic
CGAATACAATTTAATTGCTG+AGG 0.543999 7.1:+66947088 MS.gene060449:CDS
TCATGGTCATGATCATATCA+TGG 0.552733 7.1:+66947469 MS.gene060449:CDS
GATCCAATGCAAAGAGCACA+GGG 0.577809 7.1:+66948484 MS.gene060449:CDS
TTTGGGGTGTTGTCAAAACA+TGG 0.585137 7.1:-66947314 None:intergenic
AAGGCTCTCATCACATGAAG+AGG 0.585610 7.1:-66948396 None:intergenic
TCGATGATAGAATCTCCAAA+AGG 0.598134 7.1:-66948575 None:intergenic
ACTTCAATGCTGCCATGCGT+AGG 0.601033 7.1:-66949177 None:intergenic
TGTTGGTTTACCATTTCAAG+TGG 0.603001 7.1:+66948427 MS.gene060449:CDS
AAATTGTAAGGAATTTGTAG+TGG 0.612033 7.1:-66947342 None:intergenic
TCCAATGCAAAGAGCACAGG+GGG 0.615078 7.1:+66948486 MS.gene060449:CDS
GTTGCTGAGAGCTGTGTGAG+TGG 0.619632 7.1:-66947213 None:intergenic
AACAAAGATAGAGTCACAAG+TGG 0.633558 7.1:+66948337 MS.gene060449:CDS
ATTTGTAGTGGATGAATTTG+GGG 0.649171 7.1:-66947330 None:intergenic
ACTTGTGAAGAACCTACGCA+TGG 0.684270 7.1:+66949165 MS.gene060449:CDS
ATCCAATGCAAAGAGCACAG+GGG 0.772272 7.1:+66948485 MS.gene060449:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATTGTCAATTTAT+TGG + chr7.1:66947911-66947930 MS.gene060449:intron 10.0%
!!! AATCTTAATTATTTTATAGA+TGG + chr7.1:66949114-66949133 MS.gene060449:intron 10.0%
!!! TAATACAATTTTTTAGTTTT+TGG + chr7.1:66948809-66948828 MS.gene060449:intron 10.0%
!! AGTAAATGAATAAAGAAATA+TGG + chr7.1:66947991-66948010 MS.gene060449:intron 15.0%
!! ATAATTGTTATCATCTTATA+AGG + chr7.1:66948886-66948905 MS.gene060449:intron 15.0%
!! ATACAAAAATACTATAATCT+TGG + chr7.1:66948171-66948190 MS.gene060449:intron 15.0%
!! ATCAAAAGATATTCAATATT+TGG - chr7.1:66947789-66947808 None:intergenic 15.0%
!! TATAATAATAGTAATAGTGA+TGG - chr7.1:66948837-66948856 None:intergenic 15.0%
!! TGTATTAAAAAAAATGTTAG+TGG - chr7.1:66948796-66948815 None:intergenic 15.0%
!!! TAAGTTTAAAACATAATTAG+TGG + chr7.1:66948053-66948072 MS.gene060449:intron 15.0%
!! AATGTTAGTGGTAAAATTAA+AGG - chr7.1:66948784-66948803 None:intergenic 20.0%
!! ATAATCTTGGTTACATTATT+TGG + chr7.1:66948184-66948203 MS.gene060449:intron 20.0%
!! ATGAATAAAGAAATATGGTT+TGG + chr7.1:66947996-66948015 MS.gene060449:intron 20.0%
!! ATGTTAGTGGTAAAATTAAA+GGG - chr7.1:66948783-66948802 None:intergenic 20.0%
!! CGATATTGTAAAAATATGTT+AGG + chr7.1:66948226-66948245 MS.gene060449:intron 20.0%
!! TATTGTAAAAATATGTTAGG+TGG + chr7.1:66948229-66948248 MS.gene060449:intron 20.0%
!!! ACTACAACATTTTTTGTTTT+AGG + chr7.1:66948937-66948956 MS.gene060449:intron 20.0%
!!! ATTAAATTTTGTTCGATGAA+AGG - chr7.1:66947738-66947757 None:intergenic 20.0%
!!! ATTATTTTATAGATGGATGA+AGG + chr7.1:66949121-66949140 MS.gene060449:intron 20.0%
!!! ATTTTGTTGTCTTTTGATTT+AGG + chr7.1:66949053-66949072 MS.gene060449:intron 20.0%
!!! GTGGTAAAAAATATTTTTGA+CGG + chr7.1:66948080-66948099 MS.gene060449:intron 20.0%
!!! TATAAGGAGTATTTTATTCT+AGG + chr7.1:66948902-66948921 MS.gene060449:intron 20.0%
! AAATTATGGTCGAAATTCAA+AGG + chr7.1:66948519-66948538 MS.gene060449:CDS 25.0%
! AAATTGTAAGGAATTTGTAG+TGG - chr7.1:66947345-66947364 None:intergenic 25.0%
! AACAAAAAATGTTGTAGTGT+TGG - chr7.1:66948935-66948954 None:intergenic 25.0%
! ACAAATTCCTTACAATTTAG+TGG + chr7.1:66947347-66947366 MS.gene060449:CDS 25.0%
! ACGCTATATTTACAAATTGA+AGG - chr7.1:66947961-66947980 None:intergenic 25.0%
! CGCTATATTTACAAATTGAA+GGG - chr7.1:66947960-66947979 None:intergenic 25.0%
! TAATATGAAGAGATAAGAGA+TGG - chr7.1:66948627-66948646 None:intergenic 25.0%
! TCCAAATCTATAAGGAAATT+CGG - chr7.1:66947122-66947141 None:intergenic 25.0%
! TCTTATTCCTAACCTTAAAA+AGG + chr7.1:66947544-66947563 MS.gene060449:CDS 25.0%
! TTAAAACATAATTAGTGGTG+TGG + chr7.1:66948058-66948077 MS.gene060449:intron 25.0%
! TTCAAATCCACTAAATTGTA+AGG - chr7.1:66947357-66947376 None:intergenic 25.0%
!! TAGGGAAATATATGTTGATT+CGG + chr7.1:66948462-66948481 MS.gene060449:CDS 25.0%
!! TTACTTCTTCTACCTTTTTA+AGG - chr7.1:66947559-66947578 None:intergenic 25.0%
!! TTCATATTTTCCATTTCAGT+TGG - chr7.1:66947398-66947417 None:intergenic 25.0%
!!! AATTTGTAGTGGATGAATTT+GGG - chr7.1:66947334-66947353 None:intergenic 25.0%
!!! ATTTTAAAAGCTAGCTAAGT+TGG - chr7.1:66947592-66947611 None:intergenic 25.0%
CAACACCAAAACAATCAAAA+GGG + chr7.1:66948743-66948762 MS.gene060449:intron 30.0%
CCAAATCTATAAGGAAATTC+GGG - chr7.1:66947121-66947140 None:intergenic 30.0%
CGAATACAATTTAATTGCTG+AGG + chr7.1:66947088-66947107 MS.gene060449:CDS 30.0%
GGGGCTTATAGTTAAAATTA+TGG + chr7.1:66948505-66948524 MS.gene060449:CDS 30.0%
GTGGAGAATGCTTAATTATA+TGG - chr7.1:66948654-66948673 None:intergenic 30.0%
! AATAGTAGTGTCTTACCTTT+TGG + chr7.1:66948560-66948579 MS.gene060449:CDS 30.0%
! GATGAGTTAGAAGAAAGTTT+TGG - chr7.1:66947278-66947297 None:intergenic 30.0%
!! ACTGTTGATTGTTTTGTTCT+TGG - chr7.1:66947178-66947197 None:intergenic 30.0%
!! AGAAGAAAGTTTTGGTGAAA+AGG - chr7.1:66947270-66947289 None:intergenic 30.0%
!! ATTTGTAGTGGATGAATTTG+GGG - chr7.1:66947333-66947352 None:intergenic 30.0%
!! CTGTTGATTGTTTTGTTCTT+GGG - chr7.1:66947177-66947196 None:intergenic 30.0%
!! CTTTACCCTTTTGATTGTTT+TGG - chr7.1:66948751-66948770 None:intergenic 30.0%
!! GAATTTGTAGTGGATGAATT+TGG - chr7.1:66947335-66947354 None:intergenic 30.0%
!!! GTTTGAATCATCTTGTTTTG+TGG - chr7.1:66948673-66948692 None:intergenic 30.0%
!!! TAAAAAGCGTTTGGAAGTTT+TGG + chr7.1:66948298-66948317 MS.gene060449:CDS 30.0%
!!! TCTTCTACCTTTTTAAGGTT+AGG - chr7.1:66947554-66947573 None:intergenic 30.0%
AAACATAATTAGTGGTGTGG+TGG + chr7.1:66948061-66948080 MS.gene060449:intron 35.0%
AACAAAGATAGAGTCACAAG+TGG + chr7.1:66948337-66948356 MS.gene060449:CDS 35.0%
AGGCTACAACATGAACATAA+AGG + chr7.1:66949141-66949160 MS.gene060449:CDS 35.0%
ATCACTATAAATGCCTGGTT+TGG - chr7.1:66948369-66948388 None:intergenic 35.0%
CCAACACCAAAACAATCAAA+AGG + chr7.1:66948742-66948761 MS.gene060449:intron 35.0%
CCCGAATTTCCTTATAGATT+TGG + chr7.1:66947118-66947137 MS.gene060449:CDS 35.0%
GAAGCTCTTCCAAATCTATA+AGG - chr7.1:66947130-66947149 None:intergenic 35.0%
GTAAACCAACAACACTATGA+AGG - chr7.1:66948418-66948437 None:intergenic 35.0%
TCATGGTCATGATCATATCA+TGG + chr7.1:66947469-66947488 MS.gene060449:CDS 35.0%
TCGATGATAGAATCTCCAAA+AGG - chr7.1:66948578-66948597 None:intergenic 35.0%
TTGTCATCACTATAAATGCC+TGG - chr7.1:66948374-66948393 None:intergenic 35.0%
! ATCAACAGTGTTTGACTTCA+AGG + chr7.1:66947189-66947208 MS.gene060449:CDS 35.0%
!! GAAAGAGCTTAAAAAGCGTT+TGG + chr7.1:66948289-66948308 MS.gene060449:CDS 35.0%
!! TGTTGGTTTACCATTTCAAG+TGG + chr7.1:66948427-66948446 MS.gene060449:CDS 35.0%
!!! CCTTTTGATTGTTTTGGTGT+TGG - chr7.1:66948745-66948764 None:intergenic 35.0%
AAAAGGTCTCGTGGTAATCA+TGG + chr7.1:66947452-66947471 MS.gene060449:CDS 40.0%
AAGTGGAAGCAAGAGTCTTA+GGG + chr7.1:66948444-66948463 MS.gene060449:CDS 40.0%
AATCCGCAACCTAAACGTTT+AGG - chr7.1:66949003-66949022 None:intergenic 40.0%
AATCCGTTGCCTAAACGTTT+AGG + chr7.1:66948991-66949010 MS.gene060449:intron 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr7.1:66948440-66948459 None:intergenic 40.0%
CAACCTAAACGTTTAGGCAA+CGG - chr7.1:66948997-66949016 None:intergenic 40.0%
CAGAAGAGTCATCGAGAAAA+AGG + chr7.1:66947435-66947454 MS.gene060449:CDS 40.0%
! GTGGTAAAATTAAAGGGTGC+TGG - chr7.1:66948777-66948796 None:intergenic 40.0%
! TTTTCTCGATGACTCTTCTG+AGG - chr7.1:66947435-66947454 None:intergenic 40.0%
!! GTAAAATTAAAGGGTGCTGG+TGG - chr7.1:66948774-66948793 None:intergenic 40.0%
!! TTGCCTAAACGTTTAGGTTG+CGG + chr7.1:66948997-66949016 MS.gene060449:intron 40.0%
!! TTTGGGGTGTTGTCAAAACA+TGG - chr7.1:66947317-66947336 None:intergenic 40.0%
AAGGCTCTCATCACATGAAG+AGG - chr7.1:66948399-66948418 None:intergenic 45.0%
ACCAGTGTCTCCAACTGAAA+TGG + chr7.1:66947385-66947404 MS.gene060449:CDS 45.0%
ACTTGTGAAGAACCTACGCA+TGG + chr7.1:66949165-66949184 MS.gene060449:CDS 45.0%
CAAGTGGAAGCAAGAGTCTT+AGG + chr7.1:66948443-66948462 MS.gene060449:CDS 45.0%
GAGAGCCTTCATAGTGTTGT+TGG + chr7.1:66948410-66948429 MS.gene060449:CDS 45.0%
TCATCGAGAAAAAGGTCTCG+TGG + chr7.1:66947443-66947462 MS.gene060449:CDS 45.0%
TCCATTTCAGTTGGAGACAC+TGG - chr7.1:66947389-66947408 None:intergenic 45.0%
! ATCCAATGCAAAGAGCACAG+GGG + chr7.1:66948485-66948504 MS.gene060449:CDS 45.0%
! GATCCAATGCAAAGAGCACA+GGG + chr7.1:66948484-66948503 MS.gene060449:CDS 45.0%
!! ACGTTTAGGTTGCGGATTTC+AGG + chr7.1:66949005-66949024 MS.gene060449:intron 45.0%
!!! CATTTATATAATTATTTTAA+AGG + chr7.1:66947692-66947711 MS.gene060449:intron 5.0%
ACTTCAATGCTGCCATGCGT+AGG - chr7.1:66949180-66949199 None:intergenic 50.0%
CAAGTGGTTGTGACCAAACC+AGG + chr7.1:66948353-66948372 MS.gene060449:CDS 50.0%
GGTCTCTACCTGAGCAATGA+TGG - chr7.1:66948606-66948625 None:intergenic 50.0%
! CGACGCAAAAGCGTGGTTAA+AGG + chr7.1:66948963-66948982 MS.gene060449:intron 50.0%
! GGATCCAATGCAAAGAGCAC+AGG + chr7.1:66948483-66948502 MS.gene060449:CDS 50.0%
! TCCAATGCAAAGAGCACAGG+GGG + chr7.1:66948486-66948505 MS.gene060449:CDS 50.0%
CGACGTGACCATCATTGCTC+AGG + chr7.1:66948595-66948614 MS.gene060449:CDS 55.0%
GTTGCTGAGAGCTGTGTGAG+TGG - chr7.1:66947216-66947235 None:intergenic 55.0%
TAGGCAACGACGCAAAAGCG+TGG + chr7.1:66948956-66948975 MS.gene060449:intron 55.0%
TAGGTTGCGGATTTCAGGCG+TGG + chr7.1:66949010-66949029 MS.gene060449:intron 55.0%
GCCCCCTGTGCTCTTTGCAT+TGG - chr7.1:66948490-66948509 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 66947083 66949213 66947083 ID=MS.gene060449
chr7.1 mRNA 66947083 66949213 66947083 ID=MS.gene060449.t1;Parent=MS.gene060449
chr7.1 exon 66947083 66947565 66947083 ID=MS.gene060449.t1.exon1;Parent=MS.gene060449.t1
chr7.1 CDS 66947083 66947565 66947083 ID=cds.MS.gene060449.t1;Parent=MS.gene060449.t1
chr7.1 exon 66948248 66948616 66948248 ID=MS.gene060449.t1.exon2;Parent=MS.gene060449.t1
chr7.1 CDS 66948248 66948616 66948248 ID=cds.MS.gene060449.t1;Parent=MS.gene060449.t1
chr7.1 exon 66949133 66949213 66949133 ID=MS.gene060449.t1.exon3;Parent=MS.gene060449.t1
chr7.1 CDS 66949133 66949213 66949133 ID=cds.MS.gene060449.t1;Parent=MS.gene060449.t1
Gene Sequence

>MS.gene060449

ATGAACGAATACAATTTAATTGCTGAGGAATGCAACCCGAATTTCCTTATAGATTTGGAAGAGCTTCTTTCACATGACATAGCTAATGTCTCCCAAGAACAAAACAATCAACAGTGTTTGACTTCAAGGTCCACTCACACAGCTCTCAGCAACACAATTGATCATAGCAACAAAATCAATGAAACCTTTTCACCAAAACTTTCTTCTAACTCATCTTTTCAGTTTCAAATTCCATGTTTTGACAACACCCCAAATTCATCCACTACAAATTCCTTACAATTTAGTGGATTTGAAAAATATGAACCAGTGTCTCCAACTGAAATGGAAAATATGAATCACTCAACTCAAACCTCAGAAGAGTCATCGAGAAAAAGGTCTCGTGGTAATCATGGTCATGATCATATCATGGCTGAGAGAAAGAGAAGAGAGAAACTCACAGAGAACTTCATTGCTCTTGCAGCTCTTATTCCTAACCTTAAAAAGGTAGAAGAAGTAATATTCACTTACCAACTTAGCTAGCTTTTAAAATCGTTTTTTAAAGTTCAAGATGTGTCAGTAAATTTATTATTTAAATAATTTTATTTTATTTGAAAAAAAACTATTTTTTATCATTTATATAATTATTTTAAAGGAAAAAAACTAGTATTATTTTCCTTTCATCGAACAAAATTTAATTTTTTATGAATATTTATTATTCATAATACCAAATATTGAATATCTTTTGATAAAATGTCAAAATTGCTATAATATTTACAAATTAAAAAATCTCGTTTTTTTATGAAATTATCTTTTCTAAAATGAAAAATTTGACAAATTGTTCTAATTCATAAAAATAATTGTCAATTTATTGGTTTAGAAAATAAATATATCAAAACCCTTCAATTTGTAAATATAGCGTAAAAGTTGCAAGTAAATGAATAAAGAAATATGGTTTGGTGTATTGAATTTGTTTACAATTGATATTGTTTTATAAGTTTAAAACATAATTAGTGGTGTGGTGGTAAAAAATATTTTTGACGGTTCAAAGTTTAAAAGACGTCTTATAAAAAAGATGATCAGTAAACAAATCATGAGACTCTTATATTTAGATACAAAAATACTATAATCTTGGTTACATTATTTGGTGTTACACTACTCACTAATCGATATTGTAAAAATATGTTAGGTGGACAAATCTTCTGTATTAGTTGAAGCTATCAAATACATGAAAGAGCTTAAAAAGCGTTTGGAAGTTTTGGAAGAACAAAATGAGAAAACAAAGATAGAGTCACAAGTGGTTGTGACCAAACCAGGCATTTATAGTGATGACAATTCCTCTTCATGTGATGAGAGCCTTCATAGTGTTGTTGGTTTACCATTTCAAGTGGAAGCAAGAGTCTTAGGGAAATATATGTTGATTCGGATCCAATGCAAAGAGCACAGGGGGCTTATAGTTAAAATTATGGTCGAAATTCAAAGGTTTCAACTATTTGTTGTTAATAGTAGTGTCTTACCTTTTGGAGATTCTATCATCGACGTGACCATCATTGCTCAGGTAGAGACCATCTCTTATCTCTTCATATTAATAACCATATAATTAAGCATTCTCCACAAAACAAGATGATTCAAACAGAAGTTTAAAAAGTTCAATACATCGAACACAAACAAAAACAGAATCAGCCAACACCAAAACAATCAAAAGGGTAAAGCCACCAGCACCCTTTAATTTTACCACTAACATTTTTTTTAATACAATTTTTTAGTTTTTGGTGCCATCACTATTACTATTATTATAGTGACAAATCTTTTTTCATTATTATTATAATAATTGTTATCATCTTATAAGGAGTATTTTATTCTAGGTTGTTTTCCAACACTACAACATTTTTTGTTTTAGGCAACGACGCAAAAGCGTGGTTAAAGGTACTAAATCCGTTGCCTAAACGTTTAGGTTGCGGATTTCAGGCGTGGTATAATTACTCGATATAATCATTTTGTTGTCTTTTGATTTAGGTGTTTATTTTTGTATTATTTACGATTGTATTTAATATTAATCTTAATTATTTTATAGATGGATGAAGGCTACAACATGAACATAAAGGAACTTGTGAAGAACCTACGCATGGCAGCATTGAAGTTTACGTCATCATAA
Protein sequence

>MS.gene060449.t1

MNEYNLIAEECNPNFLIDLEELLSHDIANVSQEQNNQQCLTSRSTHTALSNTIDHSNKINETFSPKLSSNSSFQFQIPCFDNTPNSSTTNSLQFSGFEKYEPVSPTEMENMNHSTQTSEESSRKRSRGNHGHDHIMAERKRREKLTENFIALAALIPNLKKVDKSSVLVEAIKYMKELKKRLEVLEEQNEKTKIESQVVVTKPGIYSDDNSSSCDESLHSVVGLPFQVEARVLGKYMLIRIQCKEHRGLIVKIMVEIQRFQLFVVNSSVLPFGDSIIDVTIIAQMDEGYNMNIKELVKNLRMAALKFTSS