AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060501

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060501.t1 MTR_8g024770 91.595 464 29 1 1 464 1 454 0.0 833
MS.gene060501.t1 MTR_8g024790 82.057 457 67 8 13 464 16 462 0.0 741
MS.gene060501.t1 MTR_5g030430 51.980 202 88 4 270 464 474 673 7.18e-54 191
MS.gene060501.t1 MTR_5g030430 32.973 185 91 3 22 177 44 224 1.21e-28 119
MS.gene060501.t1 MTR_8g067280 47.668 193 93 3 271 456 444 635 6.05e-49 177
MS.gene060501.t1 MTR_8g067280 31.795 195 100 6 22 187 53 243 3.95e-25 108
MS.gene060501.t1 MTR_7g096350 27.331 472 241 12 22 436 49 475 1.92e-36 140
MS.gene060501.t1 MTR_5g030420 34.286 175 82 4 22 167 27 197 7.07e-29 114
MS.gene060501.t1 MTR_5g030420 34.286 175 82 4 22 167 27 197 7.36e-29 114
MS.gene060501.t1 MTR_8g027495 37.427 171 93 5 287 456 456 613 4.82e-24 105
MS.gene060501.t1 MTR_7g117670 34.884 172 96 3 287 456 400 557 5.70e-22 99.4
MS.gene060501.t1 MTR_3g104100 32.927 164 102 3 277 433 183 345 1.53e-17 84.3
MS.gene060501.t1 MTR_1g072320 32.941 170 91 4 289 445 470 629 3.11e-17 84.7
MS.gene060501.t1 MTR_2g081040 33.548 155 95 3 286 433 174 327 6.01e-16 79.7
MS.gene060501.t1 MTR_4g009110 25.610 164 115 2 288 448 173 332 1.62e-15 78.2
MS.gene060501.t1 MTR_0250s0040 29.730 148 80 4 260 402 69 197 8.29e-15 74.7
MS.gene060501.t1 MTR_3g030700 35.795 176 98 5 266 433 173 341 9.97e-15 75.9
MS.gene060501.t1 MTR_4g009540 27.778 180 110 5 275 445 142 310 1.18e-14 75.1
MS.gene060501.t1 MTR_4g097940 29.139 151 92 4 285 429 148 289 2.11e-14 74.3
MS.gene060501.t1 MTR_4g009540 29.878 164 95 5 275 429 142 294 2.15e-14 74.3
MS.gene060501.t1 MTR_7g083900 60.000 55 22 0 287 341 284 338 1.96e-13 72.4
MS.gene060501.t1 MTR_7g083900 60.000 55 22 0 287 341 284 338 2.02e-13 72.4
MS.gene060501.t1 MTR_3g498695 58.182 55 23 0 287 341 296 350 2.27e-13 72.4
MS.gene060501.t1 MTR_3g498695 58.182 55 23 0 287 341 296 350 2.30e-13 72.4
MS.gene060501.t1 MTR_5g014640 31.944 144 83 3 290 429 155 287 2.79e-13 71.2
MS.gene060501.t1 MTR_2g022280 27.976 168 104 5 288 442 1 164 1.50e-12 66.6
MS.gene060501.t1 MTR_4g066460 30.263 152 72 5 256 402 139 261 1.56e-12 68.9
MS.gene060501.t1 MTR_4g067010 28.467 137 71 4 271 402 139 253 2.68e-12 68.2
MS.gene060501.t1 MTR_4g092700 26.946 167 102 5 272 431 143 296 3.22e-12 67.8
MS.gene060501.t1 MTR_4g097950 29.480 173 110 6 285 452 67 232 5.59e-12 66.2
MS.gene060501.t1 MTR_0246s0020 28.814 118 75 2 289 401 198 311 7.56e-12 67.0
MS.gene060501.t1 MTR_0246s0020 28.814 118 75 2 289 401 198 311 7.62e-12 67.0
MS.gene060501.t1 MTR_4g097920 29.167 168 98 7 268 431 121 271 8.33e-12 66.6
MS.gene060501.t1 MTR_4g097920 29.167 168 98 7 268 431 136 286 8.38e-12 66.6
MS.gene060501.t1 MTR_8g098275 52.381 63 28 1 282 342 235 297 9.29e-12 67.4
MS.gene060501.t1 MTR_6g047570 30.252 119 69 3 289 402 159 268 1.04e-11 66.2
MS.gene060501.t1 MTR_8g098275 52.381 63 28 1 282 342 299 361 1.09e-11 67.4
MS.gene060501.t1 MTR_7g110810 35.000 100 62 2 246 345 172 268 1.16e-11 66.6
MS.gene060501.t1 MTR_2g084280 28.000 150 94 3 293 438 137 276 1.21e-11 65.9
MS.gene060501.t1 MTR_2g010450 27.517 149 87 3 289 428 177 313 1.21e-11 66.2
MS.gene060501.t1 MTR_8g098275 56.364 55 24 0 288 342 400 454 1.29e-11 67.0
MS.gene060501.t1 MTR_0011s0260 29.078 141 96 2 289 429 183 319 1.32e-11 66.2
MS.gene060501.t1 MTR_4g094762 30.968 155 93 6 290 434 293 443 1.83e-11 66.6
MS.gene060501.t1 MTR_0011s0210 27.660 141 98 2 289 429 183 319 2.10e-11 65.9
MS.gene060501.t1 MTR_2g038040 50.000 62 24 1 290 344 53 114 2.38e-11 64.3
MS.gene060501.t1 MTR_1g112680 31.092 119 57 2 224 342 277 370 5.35e-11 65.1
MS.gene060501.t1 MTR_2g104550 21.635 208 148 6 249 450 98 296 6.59e-11 63.9
MS.gene060501.t1 MTR_2g104490 26.667 180 111 8 272 439 116 286 8.71e-11 63.2
MS.gene060501.t1 MTR_4g057270 52.000 50 24 0 293 342 153 202 9.37e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060501.t1 AT4G00870 35.412 449 216 11 17 455 29 413 1.65e-68 224
MS.gene060501.t1 AT5G46830 32.475 505 252 15 22 464 33 510 1.65e-60 206
MS.gene060501.t1 AT1G32640 49.057 212 90 6 259 464 423 622 2.77e-52 186
MS.gene060501.t1 AT1G32640 31.053 190 94 3 22 178 67 252 4.63e-30 124
MS.gene060501.t1 AT4G17880 48.691 191 83 5 270 455 397 577 8.47e-50 179
MS.gene060501.t1 AT4G17880 29.688 192 95 3 23 178 63 250 5.21e-28 117
MS.gene060501.t1 AT5G46760 47.475 198 96 5 270 464 396 588 8.13e-49 176
MS.gene060501.t1 AT5G46760 32.065 184 89 4 22 173 51 230 3.42e-26 112
MS.gene060501.t1 AT2G46510 27.789 511 251 16 22 444 47 527 3.17e-43 160
MS.gene060501.t1 AT4G16430 25.641 468 264 13 3 437 25 441 2.47e-35 137
MS.gene060501.t1 AT1G01260 39.535 172 77 3 273 444 417 561 1.31e-26 113
MS.gene060501.t1 AT1G01260 39.535 172 77 3 273 444 417 561 1.31e-26 113
MS.gene060501.t1 AT1G01260 39.535 172 77 3 273 444 417 561 1.31e-26 113
MS.gene060501.t1 AT4G00480 21.371 496 277 15 28 436 26 495 6.60e-19 90.1
MS.gene060501.t1 AT4G00480 21.285 498 279 15 28 438 26 497 9.88e-19 89.4
MS.gene060501.t1 AT4G00480 21.285 498 279 15 28 438 26 497 1.03e-18 89.0
MS.gene060501.t1 AT4G37850 29.208 202 116 6 245 429 99 290 2.35e-15 77.4
MS.gene060501.t1 AT4G37850 29.208 202 116 6 245 429 99 290 2.35e-15 77.4
MS.gene060501.t1 AT3G26744 60.000 55 22 0 287 341 305 359 3.62e-14 75.1
MS.gene060501.t1 AT3G26744 60.000 55 22 0 287 341 305 359 3.73e-14 75.1
MS.gene060501.t1 AT3G26744 60.000 55 22 0 287 341 305 359 3.73e-14 75.1
MS.gene060501.t1 AT3G26744 60.000 55 22 0 287 341 305 359 3.73e-14 75.1
MS.gene060501.t1 AT1G12860 60.000 55 22 0 287 341 265 319 5.14e-14 74.3
MS.gene060501.t1 AT1G12860 60.000 55 22 0 287 341 265 319 5.80e-14 74.3
MS.gene060501.t1 AT1G63650 26.061 165 106 4 289 438 405 568 5.47e-13 71.6
MS.gene060501.t1 AT1G63650 26.061 165 106 4 289 438 405 568 5.47e-13 71.6
MS.gene060501.t1 AT1G63650 26.061 165 106 4 289 438 405 568 5.47e-13 71.6
MS.gene060501.t1 AT5G57150 28.977 176 114 5 267 437 38 207 1.06e-12 67.8
MS.gene060501.t1 AT5G57150 28.977 176 114 5 267 437 39 208 1.46e-12 67.4
MS.gene060501.t1 AT5G57150 28.977 176 114 5 267 437 38 207 1.52e-12 67.8
MS.gene060501.t1 AT5G57150 28.977 176 114 5 267 437 39 208 1.54e-12 67.4
MS.gene060501.t1 AT5G57150 31.373 153 100 4 290 437 56 208 2.46e-12 67.4
MS.gene060501.t1 AT4G29930 62.222 45 17 0 290 334 55 99 2.54e-12 67.0
MS.gene060501.t1 AT4G29930 62.222 45 17 0 290 334 55 99 2.70e-12 66.6
MS.gene060501.t1 AT4G29930 62.222 45 17 0 290 334 55 99 2.77e-12 66.6
MS.gene060501.t1 AT4G09820 50.909 55 27 0 288 342 362 416 4.39e-12 68.6
MS.gene060501.t1 AT4G29930 63.636 44 16 0 291 334 56 99 5.06e-12 65.1
MS.gene060501.t1 AT4G29930 62.222 45 17 0 290 334 55 99 5.16e-12 66.6
MS.gene060501.t1 AT4G29930 62.222 45 17 0 290 334 55 99 5.16e-12 66.6
MS.gene060501.t1 AT2G16910 29.843 191 107 7 293 461 318 503 5.46e-12 68.2
MS.gene060501.t1 AT4G29930 62.222 45 17 0 290 334 55 99 5.62e-12 66.2
MS.gene060501.t1 AT3G24140 24.537 216 138 5 269 460 175 389 3.55e-11 65.5
MS.gene060501.t1 AT3G24140 24.537 216 138 5 269 460 175 389 4.60e-11 65.1
MS.gene060501.t1 AT5G41315 24.581 179 113 5 280 438 441 617 6.08e-11 65.1
MS.gene060501.t1 AT5G41315 24.581 179 113 5 280 438 433 609 6.71e-11 65.1
MS.gene060501.t1 AT5G41315 24.581 179 113 5 280 438 438 614 6.86e-11 65.1

Find 70 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTGAAGATTTAAAATT+AGG 0.097958 8.1:-75684746 MS.gene060501:CDS
CTTGAAAGATTTGGAGTTTC+AGG 0.118528 8.1:-75684507 MS.gene060501:CDS
CTTCTCATGGGTGGCTTCTT+TGG 0.173047 8.1:+75685096 None:intergenic
GAGATTGATGTGAAGATTAT+AGG 0.182361 8.1:-75684596 MS.gene060501:CDS
TCCAAACCCAATCCGAAAAT+TGG 0.228757 8.1:-75685663 MS.gene060501:CDS
TGAGAATTGCAGACCTAATT+AGG 0.229660 8.1:+75684393 None:intergenic
TTGCTTTAGATTCTGTTCTT+TGG 0.229970 8.1:-75685417 MS.gene060501:CDS
AAGGTAAACCTTTCTTATCT+TGG 0.238310 8.1:-75685603 MS.gene060501:CDS
ATGACAACATACAACAAAAT+TGG 0.240197 8.1:-75685273 MS.gene060501:CDS
GTTTGAAGTTGTTGTTTCTT+TGG 0.252021 8.1:+75685558 None:intergenic
TACTACAACTAGGTTTGTTT+TGG 0.270219 8.1:+75684636 None:intergenic
TCTTCATTTCTCATCTCATT+AGG 0.290165 8.1:+75684419 None:intergenic
TTATCCATCTTTGAAACATT+TGG 0.290544 8.1:+75684818 None:intergenic
GACCGTTAATAAAGTTATAA+TGG 0.291909 8.1:-75684465 MS.gene060501:CDS
AGGTAAACCTTTCTTATCTT+GGG 0.292720 8.1:-75685602 MS.gene060501:CDS
ATCTTAAAGCATAGAATCTA+TGG 0.304209 8.1:+75684849 None:intergenic
AGATTGAAGATTTAAAATTA+GGG 0.310294 8.1:-75684745 MS.gene060501:CDS
AACCATTATAACTTTATTAA+CGG 0.312837 8.1:+75684463 None:intergenic
ATCTAAAGCAAAAGCTTTAC+CGG 0.323817 8.1:+75685429 None:intergenic
GCCAACATGGGTGTCGTCTC+TGG 0.337682 8.1:-75685127 MS.gene060501:CDS
TTGATTCTGAGGAGGATGTT+TGG 0.339396 8.1:+75685221 None:intergenic
AACTAACGGTGTAATCGAAA+TGG 0.340772 8.1:-75685302 MS.gene060501:CDS
AATGAGTGTCTTGAAAGATT+TGG 0.347886 8.1:-75684516 MS.gene060501:CDS
GGATGTTTGGAACATAGATT+TGG 0.360854 8.1:+75685234 None:intergenic
TTGTTGTTTCTTTGGTTCCT+TGG 0.363175 8.1:+75685566 None:intergenic
TCCATGCATGTGTGCTTCAT+TGG 0.364769 8.1:+75685351 None:intergenic
TGTTGAAGGGTTGGTGTTTG+TGG 0.365685 8.1:+75685703 None:intergenic
TGTTGGCAAAAGATGTGTTT+TGG 0.367022 8.1:+75685143 None:intergenic
AGGGTTGGTGTTTGTGGTGA+AGG 0.385693 8.1:+75685709 None:intergenic
TTTATCTCTCCTTTGTCTCT+CGG 0.386285 8.1:+75684877 None:intergenic
TCGATTACACCGTTAGTTGT+AGG 0.388592 8.1:+75685307 None:intergenic
ATGGGTGGCTTCTTTGGCGC+TGG 0.396457 8.1:+75685102 None:intergenic
CAAACAACAAAAGATGAAAA+AGG 0.404302 8.1:-75685622 MS.gene060501:CDS
ACATTTGTCAAGTGGGGTGG+TGG 0.427015 8.1:+75685177 None:intergenic
GGGTTGGTGTTTGTGGTGAA+GGG 0.433509 8.1:+75685710 None:intergenic
GGTTCCAAATGTTTCAAAGA+TGG 0.435449 8.1:-75684822 MS.gene060501:CDS
GAAATGAAGAGAGCCTAATT+AGG 0.443372 8.1:-75684406 MS.gene060501:CDS
CCTTTCTTATCTTGGGGTGA+AGG 0.446476 8.1:-75685595 MS.gene060501:CDS
GAGATAATGAAATCTTTCAT+AGG 0.448427 8.1:+75685757 None:intergenic
TTTAAAATTAGGGCAACAAA+AGG 0.456499 8.1:-75684735 MS.gene060501:CDS
AAAAGAGAACCGAAGAAAAG+AGG 0.478932 8.1:-75684947 MS.gene060501:CDS
TCGGCTTCCACATGGTTCAT+CGG 0.486588 8.1:+75684896 None:intergenic
TTTGGAACATAGATTTGGCT+TGG 0.488416 8.1:+75685239 None:intergenic
CCTTCACCCCAAGATAAGAA+AGG 0.497048 8.1:+75685595 None:intergenic
TAAATTTGAGTTTGATTCTG+AGG 0.509911 8.1:+75685210 None:intergenic
GTACAAACGGCGATGCTGAA+TGG 0.521203 8.1:-75685513 MS.gene060501:CDS
ATTCTATGCTTTAAGATCTG+TGG 0.527981 8.1:-75684843 MS.gene060501:CDS
ACTAACGGTGTAATCGAAAT+GGG 0.528537 8.1:-75685301 MS.gene060501:CDS
ACACTCATTAATCGTGCACT+AGG 0.531276 8.1:+75684530 None:intergenic
AATTGAAGAAGCATTACCTA+TGG 0.532558 8.1:+75685459 None:intergenic
GGTAAACCTTTCTTATCTTG+GGG 0.537701 8.1:-75685601 MS.gene060501:CDS
TTCTTTGTTATCAGATGCAG+TGG 0.539939 8.1:-75684792 MS.gene060501:CDS
GATAGTAACACATGTACAAA+CGG 0.547982 8.1:-75685526 MS.gene060501:CDS
TTTGTCTCTCGGCTTCCACA+TGG 0.548386 8.1:+75684888 None:intergenic
TCCAATGAAGCACACATGCA+TGG 0.551566 8.1:-75685352 MS.gene060501:CDS
GCTTCTTCAATTTCATTACC+CGG 0.556623 8.1:-75685448 MS.gene060501:CDS
ATGTGGAAGCCGAGAGACAA+AGG 0.579932 8.1:-75684886 MS.gene060501:CDS
TGGGGTGAAGGCTATTTCCA+AGG 0.580662 8.1:-75685583 MS.gene060501:CDS
GGTGTTTGAATTCGTGTCAA+CGG 0.584364 8.1:+75684917 None:intergenic
ATTTGAGTTTGATTCTGAGG+AGG 0.594452 8.1:+75685213 None:intergenic
ATTTGTATACCTACAACTAA+CGG 0.599891 8.1:-75685316 MS.gene060501:CDS
ATAAGATTCTTACTACAACT+AGG 0.600771 8.1:+75684626 None:intergenic
TTTACATTTGTCAAGTGGGG+TGG 0.601476 8.1:+75685174 None:intergenic
GCCAGAGACGACACCCATGT+TGG 0.603838 8.1:+75685126 None:intergenic
GATTATAGGACATGATGCTA+TGG 0.615350 8.1:-75684582 MS.gene060501:CDS
CACTCATTAATCGTGCACTA+GGG 0.626623 8.1:+75684531 None:intergenic
TAGATTTGGCTTGGTATACG+AGG 0.640872 8.1:+75685248 None:intergenic
TCTAAAGCAAAAGCTTTACC+GGG 0.640910 8.1:+75685430 None:intergenic
TGCAACGACAACTTCAATCG+TGG 0.678130 8.1:-75684663 MS.gene060501:CDS
TCAAACACCGATGAACCATG+TGG 0.723026 8.1:-75684903 MS.gene060501:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACCATTATAACTTTATTAA+CGG + chr8.1:75685676-75685695 None:intergenic 15.0%
!!! AAGATTGAAGATTTAAAATT+AGG - chr8.1:75685390-75685409 MS.gene060501:CDS 15.0%
!!! AGATTGAAGATTTAAAATTA+GGG - chr8.1:75685391-75685410 MS.gene060501:CDS 15.0%
! ATAAGATTCTTACTACAACT+AGG + chr8.1:75685513-75685532 None:intergenic 25.0%
! ATCTTAAAGCATAGAATCTA+TGG + chr8.1:75685290-75685309 None:intergenic 25.0%
! ATGACAACATACAACAAAAT+TGG - chr8.1:75684863-75684882 MS.gene060501:CDS 25.0%
! ATTTGTATACCTACAACTAA+CGG - chr8.1:75684820-75684839 MS.gene060501:CDS 25.0%
! CAAACAACAAAAGATGAAAA+AGG - chr8.1:75684514-75684533 MS.gene060501:CDS 25.0%
! GACCGTTAATAAAGTTATAA+TGG - chr8.1:75685671-75685690 MS.gene060501:CDS 25.0%
!! AATGTTTTACATTTGTCAAG+TGG + chr8.1:75684970-75684989 None:intergenic 25.0%
!! ATGTTTTACATTTGTCAAGT+GGG + chr8.1:75684969-75684988 None:intergenic 25.0%
!! TAAATTTGAGTTTGATTCTG+AGG + chr8.1:75684929-75684948 None:intergenic 25.0%
!! TTTAAAATTAGGGCAACAAA+AGG - chr8.1:75685401-75685420 MS.gene060501:CDS 25.0%
!!! AAATTTGAAGCTTTTGTTGA+AGG + chr8.1:75684450-75684469 None:intergenic 25.0%
!!! AATTTGAAGCTTTTGTTGAA+GGG + chr8.1:75684449-75684468 None:intergenic 25.0%
!!! CAATTTTTTTTGCTTCTCAT+GGG + chr8.1:75685055-75685074 None:intergenic 25.0%
!!! TTATCCATCTTTGAAACATT+TGG + chr8.1:75685321-75685340 None:intergenic 25.0%
!!! TTTTGTTGTATGTTGTCATA+AGG + chr8.1:75684862-75684881 None:intergenic 25.0%
AAGGTAAACCTTTCTTATCT+TGG - chr8.1:75684533-75684552 MS.gene060501:CDS 30.0%
AATGAGTGTCTTGAAAGATT+TGG - chr8.1:75685620-75685639 MS.gene060501:CDS 30.0%
AGGTAAACCTTTCTTATCTT+GGG - chr8.1:75684534-75684553 MS.gene060501:CDS 30.0%
GAGATTGATGTGAAGATTAT+AGG - chr8.1:75685540-75685559 MS.gene060501:CDS 30.0%
GATAGTAACACATGTACAAA+CGG - chr8.1:75684610-75684629 MS.gene060501:CDS 30.0%
TCTTCATTTCTCATCTCATT+AGG + chr8.1:75685720-75685739 None:intergenic 30.0%
! AATGGCATAGATCCAATTTT+CGG + chr8.1:75684488-75684507 None:intergenic 30.0%
! ATAGATCCAATTTTCGGATT+GGG + chr8.1:75684482-75684501 None:intergenic 30.0%
! ATCTAAAGCAAAAGCTTTAC+CGG + chr8.1:75684710-75684729 None:intergenic 30.0%
! ATGACTCGAAATTTTTCCAT+AGG - chr8.1:75684661-75684680 MS.gene060501:CDS 30.0%
! TGTTTTACATTTGTCAAGTG+GGG + chr8.1:75684968-75684987 None:intergenic 30.0%
! TTGCTTTAGATTCTGTTCTT+TGG - chr8.1:75684719-75684738 MS.gene060501:CDS 30.0%
! TTTTCATGAGAAGATGAAGA+TGG + chr8.1:75684406-75684425 None:intergenic 30.0%
!! AATTGAAGAAGCATTACCTA+TGG + chr8.1:75684680-75684699 None:intergenic 30.0%
!! ATTCTATGCTTTAAGATCTG+TGG - chr8.1:75685293-75685312 MS.gene060501:CDS 30.0%
!! GTTTGAAGTTGTTGTTTCTT+TGG + chr8.1:75684581-75684600 None:intergenic 30.0%
!! TACTACAACTAGGTTTGTTT+TGG + chr8.1:75685503-75685522 None:intergenic 30.0%
!!! GCAATTTTTTTTGCTTCTCA+TGG + chr8.1:75685056-75685075 None:intergenic 30.0%
!!! GTTGTTTTTGTTGCTAATAG+TGG + chr8.1:75685144-75685163 None:intergenic 30.0%
!!! TTTTGTTGTTTGCCACAAAA+TGG + chr8.1:75684506-75684525 None:intergenic 30.0%
AAAAGAGAACCGAAGAAAAG+AGG - chr8.1:75685189-75685208 MS.gene060501:CDS 35.0%
AACTAACGGTGTAATCGAAA+TGG - chr8.1:75684834-75684853 MS.gene060501:CDS 35.0%
ACTAACGGTGTAATCGAAAT+GGG - chr8.1:75684835-75684854 MS.gene060501:CDS 35.0%
GAAATGAAGAGAGCCTAATT+AGG - chr8.1:75685730-75685749 MS.gene060501:CDS 35.0%
GATTATAGGACATGATGCTA+TGG - chr8.1:75685554-75685573 MS.gene060501:CDS 35.0%
GCTTCTTCAATTTCATTACC+CGG - chr8.1:75684688-75684707 MS.gene060501:CDS 35.0%
GGTAAACCTTTCTTATCTTG+GGG - chr8.1:75684535-75684554 MS.gene060501:CDS 35.0%
GGTTCCAAATGTTTCAAAGA+TGG - chr8.1:75685314-75685333 MS.gene060501:CDS 35.0%
TGAGAATTGCAGACCTAATT+AGG + chr8.1:75685746-75685765 None:intergenic 35.0%
TTTATCTCTCCTTTGTCTCT+CGG + chr8.1:75685262-75685281 None:intergenic 35.0%
! AAACACATCTTTTGCCAACA+TGG - chr8.1:75684996-75685015 MS.gene060501:CDS 35.0%
! AACACATCTTTTGCCAACAT+GGG - chr8.1:75684997-75685016 MS.gene060501:CDS 35.0%
! ATTTGAGTTTGATTCTGAGG+AGG + chr8.1:75684926-75684945 None:intergenic 35.0%
! CATAGATCCAATTTTCGGAT+TGG + chr8.1:75684483-75684502 None:intergenic 35.0%
! CTTGAAAGATTTGGAGTTTC+AGG - chr8.1:75685629-75685648 MS.gene060501:CDS 35.0%
! GGATGTTTGGAACATAGATT+TGG + chr8.1:75684905-75684924 None:intergenic 35.0%
! GGTTTTCTTCCTCTTTTCTT+CGG + chr8.1:75685201-75685220 None:intergenic 35.0%
! TCTAAAGCAAAAGCTTTACC+GGG + chr8.1:75684709-75684728 None:intergenic 35.0%
! TGTTGGCAAAAGATGTGTTT+TGG + chr8.1:75684996-75685015 None:intergenic 35.0%
! TTCTTTGTTATCAGATGCAG+TGG - chr8.1:75685344-75685363 MS.gene060501:CDS 35.0%
! TTTGGAACATAGATTTGGCT+TGG + chr8.1:75684900-75684919 None:intergenic 35.0%
!! TTGTTGTTTCTTTGGTTCCT+TGG + chr8.1:75684573-75684592 None:intergenic 35.0%
!!! ATTGGATCTATGCCATTTTG+TGG - chr8.1:75684491-75684510 MS.gene060501:CDS 35.0%
!!! TTTTTTTTGCTTCTCATGGG+TGG + chr8.1:75685052-75685071 None:intergenic 35.0%
ACACTCATTAATCGTGCACT+AGG + chr8.1:75685609-75685628 None:intergenic 40.0%
CACTCATTAATCGTGCACTA+GGG + chr8.1:75685608-75685627 None:intergenic 40.0%
GGTGTTTGAATTCGTGTCAA+CGG + chr8.1:75685222-75685241 None:intergenic 40.0%
TCCAAACCCAATCCGAAAAT+TGG - chr8.1:75684473-75684492 MS.gene060501:CDS 40.0%
TCGATTACACCGTTAGTTGT+AGG + chr8.1:75684832-75684851 None:intergenic 40.0%
TTTACATTTGTCAAGTGGGG+TGG + chr8.1:75684965-75684984 None:intergenic 40.0%
! TGAAGCTTTTGTTGAAGGGT+TGG + chr8.1:75684445-75684464 None:intergenic 40.0%
! TTGATTCTGAGGAGGATGTT+TGG + chr8.1:75684918-75684937 None:intergenic 40.0%
!! TAGATTTGGCTTGGTATACG+AGG + chr8.1:75684891-75684910 None:intergenic 40.0%
!! TCCAATTTTCGGATTGGGTT+TGG + chr8.1:75684477-75684496 None:intergenic 40.0%
CCTTCACCCCAAGATAAGAA+AGG + chr8.1:75684544-75684563 None:intergenic 45.0%
CCTTTCTTATCTTGGGGTGA+AGG - chr8.1:75684541-75684560 MS.gene060501:CDS 45.0%
TCAAACACCGATGAACCATG+TGG - chr8.1:75685233-75685252 MS.gene060501:CDS 45.0%
TCCAATGAAGCACACATGCA+TGG - chr8.1:75684784-75684803 MS.gene060501:CDS 45.0%
TCCATGCATGTGTGCTTCAT+TGG + chr8.1:75684788-75684807 None:intergenic 45.0%
TGCAACGACAACTTCAATCG+TGG - chr8.1:75685473-75685492 MS.gene060501:CDS 45.0%
!! TGTTGAAGGGTTGGTGTTTG+TGG + chr8.1:75684436-75684455 None:intergenic 45.0%
ACATTTGTCAAGTGGGGTGG+TGG + chr8.1:75684962-75684981 None:intergenic 50.0%
ATGTGGAAGCCGAGAGACAA+AGG - chr8.1:75685250-75685269 MS.gene060501:CDS 50.0%
CTTCTCATGGGTGGCTTCTT+TGG + chr8.1:75685043-75685062 None:intergenic 50.0%
GTACAAACGGCGATGCTGAA+TGG - chr8.1:75684623-75684642 MS.gene060501:CDS 50.0%
TCGGCTTCCACATGGTTCAT+CGG + chr8.1:75685243-75685262 None:intergenic 50.0%
TTTGTCTCTCGGCTTCCACA+TGG + chr8.1:75685251-75685270 None:intergenic 50.0%
! TGGGGTGAAGGCTATTTCCA+AGG - chr8.1:75684553-75684572 MS.gene060501:CDS 50.0%
!! AGGGTTGGTGTTTGTGGTGA+AGG + chr8.1:75684430-75684449 None:intergenic 50.0%
!! GGGTTGGTGTTTGTGGTGAA+GGG + chr8.1:75684429-75684448 None:intergenic 50.0%
ATGGGTGGCTTCTTTGGCGC+TGG + chr8.1:75685037-75685056 None:intergenic 60.0%
GCCAGAGACGACACCCATGT+TGG + chr8.1:75685013-75685032 None:intergenic 60.0%
! GCCAACATGGGTGTCGTCTC+TGG - chr8.1:75685009-75685028 MS.gene060501:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 75684382 75685776 75684382 ID=MS.gene060501
chr8.1 mRNA 75684382 75685776 75684382 ID=MS.gene060501.t1;Parent=MS.gene060501
chr8.1 exon 75684382 75685776 75684382 ID=MS.gene060501.t1.exon1;Parent=MS.gene060501.t1
chr8.1 CDS 75684382 75685776 75684382 ID=cds.MS.gene060501.t1;Parent=MS.gene060501.t1
Gene Sequence

>MS.gene060501

ATGAAAGATTTCATTATCTCACCATCTTCATCTTCTCATGAAAACCCTTCACCACAAACACCAACCCTTCAACAAAAGCTTCAAATTTTAGTCCAAACCCAATCCGAAAATTGGATCTATGCCATTTTGTGGCAAACAACAAAAGATGAAAAAGGTAAACCTTTCTTATCTTGGGGTGAAGGCTATTTCCAAGGAACCAAAGAAACAACAACTTCAAACAAACAAAACGATAGTAACACATGTACAAACGGCGATGCTGAATGGTTTTACATGATGTCGATGACTCGAAATTTTTCCATAGGTAATGCTTCTTCAATTTCATTACCCGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTGAATAGTAAGCATGAACTTCAAATTTATAACTGTGAGCGATCCAATGAAGCACACATGCATGGAATTGAAACGCTGATTTGTATACCTACAACTAACGGTGTAATCGAAATGGGTCCTTATGACAACATACAACAAAATTGGAACCTCGTATACCAAGCCAAATCTATGTTCCAAACATCCTCCTCAGAATCAAACTCAAATTTAGATCTTAGCTCCACCACCCCACTTGACAAATGTAAAACATTCATCCAAAACACATCTTTTGCCAACATGGGTGTCGTCTCTGGCGCCAGCGCCAAAGAAGCCACCCATGAGAAGCAAAAAAAATTGCAAGAAAAACATAAAAATGTTTCATCATGTTCTATAGATTCTGAAGATTCTGATTCAGAATATTGTCCACTATTAGCAACAAAAACAACAACGACAAAGAACGATTCTTTTGAGAAAAGAGAACCGAAGAAAAGAGGAAGAAAACCGTTGACACGAATTCAAACACCGATGAACCATGTGGAAGCCGAGAGACAAAGGAGAGATAAACTAAACCATAGATTCTATGCTTTAAGATCTGTGGTTCCAAATGTTTCAAAGATGGATAAAGCTTCTTTGTTATCAGATGCAGTGGATTACATCAATGAGTTAAAAGCAAAGATTGAAGATTTAAAATTAGGGCAACAAAAGGAATCGAAAAAGATGATGATGAAAACGATGAAAATTGTTGATAATAACAGTGCAACGACAACTTCAATCGTGGTAGACCAAAACAAACCTAGTTGTAGTAAGAATCTTATTGCTTTAGAGATTGATGTGAAGATTATAGGACATGATGCTATGGTGAGAGTTCAAAGTTTGAATGTTAATCACCCTAGTGCACGATTAATGAGTGTCTTGAAAGATTTGGAGTTTCAGGTACATCATGCTAGTATATCGACCGTTAATAAAGTTATAATGGTTCAAGATGTTGTTGTTAAAATTCCTAATGAGATGAGAAATGAAGAGAGCCTAATTAGGTCTGCAATTCTCATGAAATTATGA
Protein sequence

>MS.gene060501.t1

MKDFIISPSSSSHENPSPQTPTLQQKLQILVQTQSENWIYAILWQTTKDEKGKPFLSWGEGYFQGTKETTTSNKQNDSNTCTNGDAEWFYMMSMTRNFSIGNASSISLPGKAFALDSVLWLNSKHELQIYNCERSNEAHMHGIETLICIPTTNGVIEMGPYDNIQQNWNLVYQAKSMFQTSSSESNSNLDLSSTTPLDKCKTFIQNTSFANMGVVSGASAKEATHEKQKKLQEKHKNVSSCSIDSEDSDSEYCPLLATKTTTTKNDSFEKREPKKRGRKPLTRIQTPMNHVEAERQRRDKLNHRFYALRSVVPNVSKMDKASLLSDAVDYINELKAKIEDLKLGQQKESKKMMMKTMKIVDNNSATTTSIVVDQNKPSCSKNLIALEIDVKIIGHDAMVRVQSLNVNHPSARLMSVLKDLEFQVHHASISTVNKVIMVQDVVVKIPNEMRNEESLIRSAILMKL