AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060592

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060592.t1 MTR_7g074790 72.472 178 31 1 1 178 1 160 2.26e-81 258
MS.gene060592.t1 MTR_5g039760 60.680 206 56 2 1 205 1 182 2.59e-78 248
MS.gene060592.t1 MTR_7g061980 65.546 119 41 0 1 119 1 119 1.63e-49 169
MS.gene060592.t1 MTR_0558s0020 33.460 263 152 5 8 250 37 296 7.90e-40 149
MS.gene060592.t1 MTR_6g051425 31.900 279 178 5 9 277 13 289 8.92e-38 144
MS.gene060592.t1 MTR_3g058090 53.659 123 36 1 543 665 5 106 9.62e-33 122
MS.gene060592.t1 MTR_8g446020 32.245 245 140 6 8 250 36 256 1.70e-31 124
MS.gene060592.t1 MTR_0402s0040 41.436 181 101 4 10 187 26 204 1.39e-29 123
MS.gene060592.t1 MTR_6g090505 34.061 229 135 5 45 257 10 238 9.82e-29 118
MS.gene060592.t1 MTR_4g102720 34.911 169 76 2 7 175 4 138 4.23e-26 107
MS.gene060592.t1 MTR_1g083640 28.571 238 147 6 8 225 52 286 2.68e-25 107
MS.gene060592.t1 MTR_1g070355 27.468 233 162 3 15 243 79 308 9.17e-24 106
MS.gene060592.t1 MTR_4g069880 57.353 68 29 0 1 68 1 68 2.01e-19 83.2
MS.gene060592.t1 MTR_2g099430 49.425 87 42 2 34 119 27 112 1.20e-17 79.7
MS.gene060592.t1 MTR_5g076070 25.328 229 166 3 13 238 56 282 5.93e-17 82.4
MS.gene060592.t1 MTR_0337s0040 28.708 209 126 5 11 217 37 224 7.02e-17 80.9
MS.gene060592.t1 MTR_4g035820 24.299 321 222 9 10 319 75 385 4.79e-16 82.4
MS.gene060592.t1 MTR_1g013060 28.365 208 142 3 7 208 21 227 4.96e-16 78.6
MS.gene060592.t1 MTR_5g015480 37.179 156 84 5 4 156 53 197 5.35e-16 79.0
MS.gene060592.t1 MTR_1g019850 32.867 143 83 4 3 141 63 196 6.83e-16 78.2
MS.gene060592.t1 MTR_7g446510 29.651 172 121 0 87 258 158 329 1.25e-15 79.3
MS.gene060592.t1 MTR_6g022070 28.000 175 119 3 304 477 1 169 4.80e-15 77.4
MS.gene060592.t1 MTR_2g014100 26.794 209 130 6 3 191 40 245 9.53e-15 75.1
MS.gene060592.t1 MTR_7g446520 26.872 227 151 3 14 240 92 303 1.14e-14 76.3
MS.gene060592.t1 MTR_7g113010 40.945 127 59 5 10 134 457 569 1.35e-14 77.8
MS.gene060592.t1 MTR_7g446480 29.651 172 121 0 87 258 143 314 4.33e-14 74.3
MS.gene060592.t1 MTR_1g086270 32.927 82 55 0 304 385 1 82 1.95e-13 67.4
MS.gene060592.t1 MTR_5g045210 31.000 100 67 1 545 642 20 119 6.50e-13 68.6
MS.gene060592.t1 MTR_2g070590 41.346 104 57 3 10 110 17 119 2.17e-12 64.7
MS.gene060592.t1 MTR_0853s0010 27.586 145 89 4 5 141 22 158 1.57e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060592.t1 AT4G38180 32.310 619 407 8 6 615 69 684 1.14e-112 358
MS.gene060592.t1 AT4G15090 30.716 573 391 6 3 572 44 613 5.68e-101 328
MS.gene060592.t1 AT4G15090 30.716 573 391 6 3 572 44 613 5.68e-101 328
MS.gene060592.t1 AT4G15090 30.716 573 391 6 3 572 44 613 5.68e-101 328
MS.gene060592.t1 AT4G15090 30.716 573 391 6 3 572 44 613 5.68e-101 328
MS.gene060592.t1 AT4G15090 30.716 573 391 6 3 572 44 613 5.68e-101 328
MS.gene060592.t1 AT1G76320 29.953 641 422 12 14 651 1 617 6.56e-85 281
MS.gene060592.t1 AT1G76320 29.953 641 422 12 14 651 1 617 2.57e-84 281
MS.gene060592.t1 AT1G76320 29.953 641 422 12 14 651 1 617 2.76e-84 281
MS.gene060592.t1 AT1G76320 29.953 641 422 12 14 651 1 617 2.76e-84 281
MS.gene060592.t1 AT3G22170 29.088 581 372 8 3 568 63 618 5.15e-84 283
MS.gene060592.t1 AT3G22170 29.088 581 372 8 3 568 63 618 5.15e-84 283
MS.gene060592.t1 AT3G06250 29.187 603 369 12 9 604 189 740 2.82e-83 279
MS.gene060592.t1 AT3G06250 38.462 104 48 3 9 110 27 116 7.74e-11 65.9
MS.gene060592.t1 AT3G06250 29.187 603 369 12 9 604 189 740 2.82e-83 279
MS.gene060592.t1 AT3G06250 38.462 104 48 3 9 110 27 116 7.74e-11 65.9
MS.gene060592.t1 AT3G06250 29.187 603 369 12 9 604 189 740 2.82e-83 279
MS.gene060592.t1 AT3G06250 38.462 104 48 3 9 110 27 116 7.74e-11 65.9
MS.gene060592.t1 AT5G18960 28.358 603 377 13 9 604 210 764 6.42e-75 257
MS.gene060592.t1 AT5G18960 39.423 104 47 3 9 110 42 131 2.38e-11 67.8
MS.gene060592.t1 AT5G18960 28.358 603 377 13 9 604 210 764 6.42e-75 257
MS.gene060592.t1 AT5G18960 39.423 104 47 3 9 110 42 131 2.38e-11 67.8
MS.gene060592.t1 AT2G27110 29.223 592 384 11 9 596 48 608 1.27e-73 255
MS.gene060592.t1 AT2G27110 29.223 592 384 11 9 596 48 608 1.27e-73 255
MS.gene060592.t1 AT4G19990 26.531 588 374 8 13 581 24 572 5.31e-68 238
MS.gene060592.t1 AT4G19990 26.531 588 374 8 13 581 24 572 6.73e-68 237
MS.gene060592.t1 AT4G19990 26.531 588 374 8 13 581 24 572 6.73e-68 237
MS.gene060592.t1 AT4G19990 26.531 588 374 8 13 581 24 572 7.36e-68 238
MS.gene060592.t1 AT4G19990 26.531 588 374 8 13 581 24 572 7.36e-68 238
MS.gene060592.t1 AT4G19990 26.531 588 374 8 13 581 38 586 1.01e-67 237
MS.gene060592.t1 AT4G38170 32.258 403 252 9 190 587 24 410 2.15e-66 228
MS.gene060592.t1 AT2G27110 31.106 434 290 6 167 596 35 463 1.21e-65 230
MS.gene060592.t1 AT4G19990 26.449 552 349 7 48 581 3 515 1.94e-64 227
MS.gene060592.t1 AT1G52520 26.049 572 388 11 10 566 85 636 3.03e-62 221
MS.gene060592.t1 AT2G32250 25.487 616 403 10 11 620 39 604 3.91e-62 221
MS.gene060592.t1 AT2G32250 25.487 616 403 10 11 620 39 604 8.39e-62 221
MS.gene060592.t1 AT2G32250 25.487 616 403 10 11 620 39 604 8.39e-62 221
MS.gene060592.t1 AT2G32250 25.487 616 403 10 11 620 39 604 9.31e-62 221
MS.gene060592.t1 AT2G32250 25.487 616 403 10 11 620 39 604 9.31e-62 221
MS.gene060592.t1 AT2G32250 25.487 616 403 10 11 620 39 604 9.31e-62 221
MS.gene060592.t1 AT2G32250 25.285 613 402 10 14 620 1 563 3.51e-61 219
MS.gene060592.t1 AT2G32250 25.285 613 402 10 14 620 1 563 4.02e-61 219
MS.gene060592.t1 AT1G80010 26.050 595 402 15 10 581 95 674 4.67e-54 198
MS.gene060592.t1 AT1G10240 26.056 568 397 11 10 565 48 604 6.17e-54 197
MS.gene060592.t1 AT1G10240 26.056 568 397 11 10 565 48 604 6.17e-54 197
MS.gene060592.t1 AT5G28530 22.933 641 446 12 8 620 53 673 3.11e-47 178
MS.gene060592.t1 AT5G28530 23.281 640 441 13 8 620 53 669 4.72e-47 177
MS.gene060592.t1 AT5G28530 23.281 640 441 13 8 620 53 669 4.72e-47 177
MS.gene060592.t1 AT5G28530 21.429 630 406 13 8 620 53 610 1.12e-33 137
MS.gene060592.t1 AT5G28530 21.781 629 401 14 8 620 53 606 2.11e-33 136

Find 102 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTGTCTGAAACCGAATT+TGG 0.185399 2.2:+17531255 MS.gene060592:CDS
AGACAATTCCATCATTTAAA+TGG 0.223041 2.2:+17530825 MS.gene060592:CDS
ATTACACTTTCACGTGAAAA+TGG 0.225368 2.2:+17530272 MS.gene060592:CDS
TGGAAGAGGCTGAACAATTT+TGG 0.228865 2.2:+17530066 MS.gene060592:CDS
ATAATCTTCACGATAATAAT+TGG 0.253990 2.2:+17531119 MS.gene060592:CDS
CAAAATGTTTGAAGAATTGT+AGG 0.276339 2.2:-17531282 None:intergenic
TGGAATGAAATTTGATACTA+TGG 0.288067 2.2:+17530046 MS.gene060592:CDS
AACAAATTACAAACGTGTTC+TGG 0.334571 2.2:+17530642 MS.gene060592:CDS
ATGGCTGATGACTCTGGATT+AGG 0.348989 2.2:+17530413 MS.gene060592:CDS
AAATGATCGTACCTCTATAA+TGG 0.360454 2.2:-17530778 None:intergenic
GCATGTTTCTTGAATCCCTT+TGG 0.367868 2.2:-17531964 None:intergenic
GGAATTAAACATCTTGGAAA+TGG 0.370237 2.2:+17530992 MS.gene060592:CDS
TGACATCTTCAAATGTTGAT+TGG 0.374678 2.2:+17530012 MS.gene060592:CDS
CAGAATGGAATTAAACATCT+TGG 0.376869 2.2:+17530986 MS.gene060592:CDS
CTAGTTTGAGCATGTTTACT+TGG 0.384506 2.2:-17532054 None:intergenic
TGGCTGATGACTCTGGATTA+GGG 0.390441 2.2:+17530414 MS.gene060592:CDS
AGGAAAATCATGAAGGATCT+TGG 0.394084 2.2:+17531530 MS.gene060592:CDS
TCAAATTTCATTCCAAGTCT+TGG 0.395389 2.2:-17530038 None:intergenic
GTGTGTATACCTTTCCCATT+TGG 0.396083 2.2:-17531405 None:intergenic
TTCACCAATACTAATCCAAA+TGG 0.397247 2.2:+17531390 MS.gene060592:CDS
GTTTGTCTGAAACCGAATTT+GGG 0.397918 2.2:+17531256 MS.gene060592:CDS
TGTAAGATGTATGATACATT+TGG 0.401457 2.2:+17531595 MS.gene060592:CDS
TTATGTCGCTTAGTTCCCTT+TGG 0.401911 2.2:-17531991 None:intergenic
CCCTAGACATTGCTTGACTT+TGG 0.402723 2.2:-17530907 None:intergenic
TCAAACAACCATTTAAATGA+TGG 0.407895 2.2:-17530833 None:intergenic
TGGTCAGTGAAGATCGTCTT+TGG 0.409022 2.2:-17530887 None:intergenic
ATCTTGCACAATGCCACAAC+GGG 0.416657 2.2:-17531710 None:intergenic
TATACCTATGAATTTCTTTG+AGG 0.417239 2.2:-17532087 None:intergenic
TTTCCCATTTGGATTAGTAT+TGG 0.428381 2.2:-17531394 None:intergenic
CTTCTTAAAATATACTTCTC+AGG 0.433030 2.2:-17531673 None:intergenic
GTATTTCCAACAGCAATTGT+TGG 0.433256 2.2:+17530577 MS.gene060592:CDS
AATTGTAGGATACCCAAATT+CGG 0.433675 2.2:-17531268 None:intergenic
TGTCTAGAAATCGAATGTTC+AGG 0.434178 2.2:+17531767 MS.gene060592:CDS
ATGTAGGTTTGTTTGTTGTA+AGG 0.436082 2.2:+17530166 MS.gene060592:CDS
ACAAGCAAATGAGATTGATA+TGG 0.437582 2.2:+17530394 MS.gene060592:CDS
CCGTTCTAGACTCGGCTCTC+CGG 0.443682 2.2:-17530235 None:intergenic
TCTGGTTTCAACCATTATAG+AGG 0.443875 2.2:+17530767 MS.gene060592:CDS
ATTGATATGGCTGATGACTC+TGG 0.443968 2.2:+17530407 MS.gene060592:CDS
ACCTATGAATTTCTTTGAGG+TGG 0.444691 2.2:-17532084 None:intergenic
GTTTGAATTGAATGATGTTA+AGG 0.447594 2.2:+17531645 MS.gene060592:CDS
AAAGGAGGTTCTTTGCTAAG+AGG 0.453456 2.2:+17531022 MS.gene060592:CDS
CATAAACCATGGTGAGTCTC+AGG 0.455966 2.2:-17530947 None:intergenic
ATTCGATTTCTAGACAACTT+AGG 0.457251 2.2:-17531760 None:intergenic
CCTATGAATTTCTTTGAGGT+GGG 0.483522 2.2:-17532083 None:intergenic
GTTTGAGCATGTTTACTTGG+AGG 0.485005 2.2:-17532051 None:intergenic
AGGTTTGTTTGTTGTAAGGA+AGG 0.486878 2.2:+17530170 MS.gene060592:CDS
CATCTTACAACTACAAGTAA+TGG 0.489617 2.2:-17531581 None:intergenic
TGTCGCTTAGTTCCCTTTGG+AGG 0.489630 2.2:-17531988 None:intergenic
GTTGATTGGAAGCCAAGACT+TGG 0.497681 2.2:+17530026 MS.gene060592:CDS
CCCACCTCAAAGAAATTCAT+AGG 0.499362 2.2:+17532083 MS.gene060592:CDS
CTTGGAAATGGAATGAAGAA+AGG 0.500755 2.2:+17531004 MS.gene060592:CDS
CTTCTTTCATGCATATCAGA+TGG 0.507819 2.2:+17530610 MS.gene060592:CDS
AGACAAAGAAGCATGGTGTA+TGG 0.510301 2.2:+17530533 MS.gene060592:CDS
TGAGAAAGCTTGGTTTGACT+TGG 0.510934 2.2:+17531087 MS.gene060592:CDS
ACCAAAGTCAAGCAATGTCT+AGG 0.513361 2.2:+17530906 MS.gene060592:CDS
GATTCTCCAACAATTGCTGT+TGG 0.523496 2.2:-17530583 None:intergenic
TTCACGTGAAAATGGAAAGC+TGG 0.524682 2.2:+17530280 MS.gene060592:CDS
CTATGAATTTCTTTGAGGTG+GGG 0.524912 2.2:-17532082 None:intergenic
GAAATTTGATACTATGGAAG+AGG 0.525500 2.2:+17530052 MS.gene060592:CDS
TTCTGATGCTATACAACCAA+AGG 0.531212 2.2:+17531948 MS.gene060592:CDS
AGCATGGTGTATGGCGACGC+TGG 0.534307 2.2:+17530542 MS.gene060592:CDS
CAACTTATGAGCACACATGC+AGG 0.537532 2.2:+17530452 MS.gene060592:CDS
AAGAAACATGCTCCTCCAAA+GGG 0.539093 2.2:+17531976 MS.gene060592:CDS
TCACCAATACTAATCCAAAT+GGG 0.541805 2.2:+17531391 MS.gene060592:CDS
TAAGCAATCCGTTCTAGACT+CGG 0.542410 2.2:-17530243 None:intergenic
CAAGAAACATGCTCCTCCAA+AGG 0.544628 2.2:+17531975 MS.gene060592:CDS
ATGGGCTGCATGTTATATGA+AGG 0.546460 2.2:+17531171 MS.gene060592:CDS
CATCTGATATGCATGAAAGA+AGG 0.546601 2.2:-17530609 None:intergenic
TTGTGAATATGTCATCACTA+AGG 0.547067 2.2:+17531510 MS.gene060592:CDS
GAGTCAGATTCATGTCTAGT+TGG 0.553408 2.2:-17531484 None:intergenic
ATGAAGGAAGCATTGACACT+TGG 0.556729 2.2:+17531187 MS.gene060592:CDS
CTCACCATGGTTTATGCACA+TGG 0.561626 2.2:+17530954 MS.gene060592:CDS
AAGTGGTCTATTGGCATCGT+TGG 0.563557 2.2:-17530735 None:intergenic
CCGGAGAGCCGAGTCTAGAA+CGG 0.566334 2.2:+17530235 MS.gene060592:CDS
CGAAATGTTCAAGAAAGCAA+TGG 0.571716 2.2:+17531873 MS.gene060592:CDS
ACACAAGCTATAGAAAATGA+TGG 0.577177 2.2:+17531904 MS.gene060592:CDS
ATCACTAAGGAAAATCATGA+AGG 0.579406 2.2:+17531523 MS.gene060592:CDS
TTCTATGTGATCGAAGCATG+TGG 0.582014 2.2:-17530358 None:intergenic
AGTCCTCACATAAGCTTGCA+AGG 0.585698 2.2:+17531353 MS.gene060592:CDS
AATACTAATCCAAATGGGAA+AGG 0.589514 2.2:+17531396 MS.gene060592:CDS
GCAGGGCATAGAGCTAATGT+TGG 0.592621 2.2:+17530470 MS.gene060592:CDS
AACTTATGAGCACACATGCA+GGG 0.596381 2.2:+17530453 MS.gene060592:CDS
AATCTTGCACAATGCCACAA+CGG 0.597437 2.2:-17531711 None:intergenic
CCAAAGTCAAGCAATGTCTA+GGG 0.598556 2.2:+17530907 MS.gene060592:CDS
TCTGATGCTATACAACCAAA+GGG 0.598723 2.2:+17531949 MS.gene060592:CDS
TGTTTCTAAGTTCATTAGAG+CGG 0.599783 2.2:+17531795 MS.gene060592:CDS
GCATCAGAACTCACAAATGA+CGG 0.601171 2.2:-17531934 None:intergenic
ACGGCGATGTATCGTCATGT+AGG 0.604688 2.2:+17530150 MS.gene060592:CDS
TGACTCTGGATTAGGGCAGA+AGG 0.608129 2.2:+17530421 MS.gene060592:CDS
TTTGTTGTAAGGAAGGACTA+CGG 0.614427 2.2:+17530177 MS.gene060592:CDS
GGCATCGTTGGTACAATATG+TGG 0.617702 2.2:-17530723 None:intergenic
ACATGGCACTTGTTGCAGAA+TGG 0.627403 2.2:+17530971 MS.gene060592:CDS
GGAAATGGAATGAAGAAAGG+AGG 0.638695 2.2:+17531007 MS.gene060592:CDS
TGATATGCATGAAAGAAGGA+CGG 0.649185 2.2:-17530605 None:intergenic
TAACCTTGCAAGCTTATGTG+AGG 0.652535 2.2:-17531356 None:intergenic
TGGACAAGAGAAGCCCGTTG+TGG 0.666264 2.2:+17531697 MS.gene060592:CDS
CACTATTATCAAGAAGCATG+AGG 0.669252 2.2:-17531846 None:intergenic
TCTATGTGATCGAAGCATGT+GGG 0.671774 2.2:-17530357 None:intergenic
TAATGTTGGATATACAGAAG+TGG 0.683641 2.2:+17530484 MS.gene060592:CDS
TTTACAAACAAGAACAAACA+CGG 0.696551 2.2:+17530131 MS.gene060592:CDS
GTGATGCCTGAGACTCACCA+TGG 0.716138 2.2:+17530941 MS.gene060592:CDS
AGTGCCATGTGCATAAACCA+TGG 0.773388 2.2:-17530958 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGCCATTAAAAAAAAAT+GGG + chr2.2:17531153-17531172 MS.gene060592:CDS 15.0%
!! TTTATGCCATTAAAAAAAAA+TGG + chr2.2:17531152-17531171 MS.gene060592:CDS 15.0%
!! ATAATCTTCACGATAATAAT+TGG + chr2.2:17531119-17531138 MS.gene060592:CDS 20.0%
!!! TATGTTTTTCTTTAAACTCA+TGG - chr2.2:17530310-17530329 None:intergenic 20.0%
! AGACAATTCCATCATTTAAA+TGG + chr2.2:17530825-17530844 MS.gene060592:CDS 25.0%
! CAAAATGTTTGAAGAATTGT+AGG - chr2.2:17531285-17531304 None:intergenic 25.0%
! CTTCTTAAAATATACTTCTC+AGG - chr2.2:17531676-17531695 None:intergenic 25.0%
! GAGAAAAAATATGCATATGA+AGG + chr2.2:17530206-17530225 MS.gene060592:CDS 25.0%
! GTTTGAATTGAATGATGTTA+AGG + chr2.2:17531645-17531664 MS.gene060592:CDS 25.0%
! TCAAACAACCATTTAAATGA+TGG - chr2.2:17530836-17530855 None:intergenic 25.0%
! TGGAATGAAATTTGATACTA+TGG + chr2.2:17530046-17530065 MS.gene060592:CDS 25.0%
! TGTAAGATGTATGATACATT+TGG + chr2.2:17531595-17531614 MS.gene060592:CDS 25.0%
! TTTACAAACAAGAACAAACA+CGG + chr2.2:17530131-17530150 MS.gene060592:CDS 25.0%
!! CAAAAATGATTTTGGATTAC+GGG + chr2.2:17530672-17530691 MS.gene060592:CDS 25.0%
!! GCAAAAATGATTTTGGATTA+CGG + chr2.2:17530671-17530690 MS.gene060592:CDS 25.0%
!!! AGAAGTATATTTTAAGAAGG+TGG + chr2.2:17531677-17531696 MS.gene060592:CDS 25.0%
!!! CTGAGAAGTATATTTTAAGA+AGG + chr2.2:17531674-17531693 MS.gene060592:CDS 25.0%
AAAAAAAGCAAGTGGTCTAT+TGG - chr2.2:17530747-17530766 None:intergenic 30.0%
AAACCAGAAAAAAAAGCAAG+TGG - chr2.2:17530755-17530774 None:intergenic 30.0%
AAATGATCGTACCTCTATAA+TGG - chr2.2:17530781-17530800 None:intergenic 30.0%
AACAAATTACAAACGTGTTC+TGG + chr2.2:17530642-17530661 MS.gene060592:CDS 30.0%
AATACTAATCCAAATGGGAA+AGG + chr2.2:17531396-17531415 MS.gene060592:CDS 30.0%
AATTGTAGGATACCCAAATT+CGG - chr2.2:17531271-17531290 None:intergenic 30.0%
ACAAGCAAATGAGATTGATA+TGG + chr2.2:17530394-17530413 MS.gene060592:CDS 30.0%
ACACAAGCTATAGAAAATGA+TGG + chr2.2:17531904-17531923 MS.gene060592:CDS 30.0%
ATCACTAAGGAAAATCATGA+AGG + chr2.2:17531523-17531542 MS.gene060592:CDS 30.0%
ATGCATATGAAGGAAAAATC+CGG + chr2.2:17530216-17530235 MS.gene060592:CDS 30.0%
ATTACACTTTCACGTGAAAA+TGG + chr2.2:17530272-17530291 MS.gene060592:CDS 30.0%
CAGAATGGAATTAAACATCT+TGG + chr2.2:17530986-17531005 MS.gene060592:CDS 30.0%
CATCTTACAACTACAAGTAA+TGG - chr2.2:17531584-17531603 None:intergenic 30.0%
GAAATTTGATACTATGGAAG+AGG + chr2.2:17530052-17530071 MS.gene060592:CDS 30.0%
GGAATTAAACATCTTGGAAA+TGG + chr2.2:17530992-17531011 MS.gene060592:CDS 30.0%
TAATGTTGGATATACAGAAG+TGG + chr2.2:17530484-17530503 MS.gene060592:CDS 30.0%
TACAAAAAGACAAAGAAGCA+TGG + chr2.2:17530526-17530545 MS.gene060592:CDS 30.0%
TCAAATTTCATTCCAAGTCT+TGG - chr2.2:17530041-17530060 None:intergenic 30.0%
TCACCAATACTAATCCAAAT+GGG + chr2.2:17531391-17531410 MS.gene060592:CDS 30.0%
TGACATCTTCAAATGTTGAT+TGG + chr2.2:17530012-17530031 MS.gene060592:CDS 30.0%
TTCACCAATACTAATCCAAA+TGG + chr2.2:17531390-17531409 MS.gene060592:CDS 30.0%
TTGTGAATATGTCATCACTA+AGG + chr2.2:17531510-17531529 MS.gene060592:CDS 30.0%
! ATTCGATTTCTAGACAACTT+AGG - chr2.2:17531763-17531782 None:intergenic 30.0%
! ATTTTGGATTACGGGTATTT+TGG + chr2.2:17530680-17530699 MS.gene060592:CDS 30.0%
! GTGTGATGCAAAAATGATTT+TGG + chr2.2:17530664-17530683 MS.gene060592:CDS 30.0%
! TGTTTCTAAGTTCATTAGAG+CGG + chr2.2:17531795-17531814 MS.gene060592:CDS 30.0%
!! ATGTAGGTTTGTTTGTTGTA+AGG + chr2.2:17530166-17530185 MS.gene060592:CDS 30.0%
!! TATAGAGGTACGATCATTTT+TGG + chr2.2:17530782-17530801 MS.gene060592:CDS 30.0%
!! TTTCCCATTTGGATTAGTAT+TGG - chr2.2:17531397-17531416 None:intergenic 30.0%
!!! TGCAGCCCATTTTTTTTTAA+TGG - chr2.2:17531161-17531180 None:intergenic 30.0%
!!! TTTTGGTGATGTTGTTTCAT+TGG + chr2.2:17530697-17530716 MS.gene060592:CDS 30.0%
AGGAAAATCATGAAGGATCT+TGG + chr2.2:17531530-17531549 MS.gene060592:CDS 35.0%
CATCTGATATGCATGAAAGA+AGG - chr2.2:17530612-17530631 None:intergenic 35.0%
CGAAATGTTCAAGAAAGCAA+TGG + chr2.2:17531873-17531892 MS.gene060592:CDS 35.0%
CTAGTTTGAGCATGTTTACT+TGG - chr2.2:17532057-17532076 None:intergenic 35.0%
CTTCTTTCATGCATATCAGA+TGG + chr2.2:17530610-17530629 MS.gene060592:CDS 35.0%
CTTGGAAATGGAATGAAGAA+AGG + chr2.2:17531004-17531023 MS.gene060592:CDS 35.0%
GTATTTCCAACAGCAATTGT+TGG + chr2.2:17530577-17530596 MS.gene060592:CDS 35.0%
TCTGATGCTATACAACCAAA+GGG + chr2.2:17531949-17531968 MS.gene060592:CDS 35.0%
TGATATGCATGAAAGAAGGA+CGG - chr2.2:17530608-17530627 None:intergenic 35.0%
TGTCTAGAAATCGAATGTTC+AGG + chr2.2:17531767-17531786 MS.gene060592:CDS 35.0%
TTCTGATGCTATACAACCAA+AGG + chr2.2:17531948-17531967 MS.gene060592:CDS 35.0%
! AGTTTGTCTGAAACCGAATT+TGG + chr2.2:17531255-17531274 MS.gene060592:CDS 35.0%
! CACTATTATCAAGAAGCATG+AGG - chr2.2:17531849-17531868 None:intergenic 35.0%
! GTTTGTCTGAAACCGAATTT+GGG + chr2.2:17531256-17531275 MS.gene060592:CDS 35.0%
! TCTGGTTTCAACCATTATAG+AGG + chr2.2:17530767-17530786 MS.gene060592:CDS 35.0%
! TGGCATTGTGCAAGATTTTA+GGG + chr2.2:17531717-17531736 MS.gene060592:CDS 35.0%
! TTTGTTGTAAGGAAGGACTA+CGG + chr2.2:17530177-17530196 MS.gene060592:CDS 35.0%
!! AAGCAGATTTTGAGAAAGCT+TGG + chr2.2:17531077-17531096 MS.gene060592:CDS 35.0%
!! AGGTTTGTTTGTTGTAAGGA+AGG + chr2.2:17530170-17530189 MS.gene060592:CDS 35.0%
!! CTATGAATTTCTTTGAGGTG+GGG - chr2.2:17532085-17532104 None:intergenic 35.0%
!! TCTCTCGTTTTAGTAGATCA+TGG - chr2.2:17530334-17530353 None:intergenic 35.0%
!!! AGACCACTTGCTTTTTTTTC+TGG + chr2.2:17530749-17530768 MS.gene060592:CDS 35.0%
!!! GAACAATTTTGGCTTGCTTA+CGG + chr2.2:17530077-17530096 MS.gene060592:CDS 35.0%
AAAGGAGGTTCTTTGCTAAG+AGG + chr2.2:17531022-17531041 MS.gene060592:CDS 40.0%
AACTTATGAGCACACATGCA+GGG + chr2.2:17530453-17530472 MS.gene060592:CDS 40.0%
AAGAAACATGCTCCTCCAAA+GGG + chr2.2:17531976-17531995 MS.gene060592:CDS 40.0%
AATCTTGCACAATGCCACAA+CGG - chr2.2:17531714-17531733 None:intergenic 40.0%
ACCAAAGTCAAGCAATGTCT+AGG + chr2.2:17530906-17530925 MS.gene060592:CDS 40.0%
ATTGATATGGCTGATGACTC+TGG + chr2.2:17530407-17530426 MS.gene060592:CDS 40.0%
CCAAAGTCAAGCAATGTCTA+GGG + chr2.2:17530907-17530926 MS.gene060592:CDS 40.0%
GAGTCAGATTCATGTCTAGT+TGG - chr2.2:17531487-17531506 None:intergenic 40.0%
GATTCTCCAACAATTGCTGT+TGG - chr2.2:17530586-17530605 None:intergenic 40.0%
GCATCAGAACTCACAAATGA+CGG - chr2.2:17531937-17531956 None:intergenic 40.0%
GCATGTTTCTTGAATCCCTT+TGG - chr2.2:17531967-17531986 None:intergenic 40.0%
GGAAATGGAATGAAGAAAGG+AGG + chr2.2:17531007-17531026 MS.gene060592:CDS 40.0%
GTGTGTATACCTTTCCCATT+TGG - chr2.2:17531408-17531427 None:intergenic 40.0%
GTTTGAGCATGTTTACTTGG+AGG - chr2.2:17532054-17532073 None:intergenic 40.0%
TAACCTTGCAAGCTTATGTG+AGG - chr2.2:17531359-17531378 None:intergenic 40.0%
TCTATGTGATCGAAGCATGT+GGG - chr2.2:17530360-17530379 None:intergenic 40.0%
TTCACGTGAAAATGGAAAGC+TGG + chr2.2:17530280-17530299 MS.gene060592:CDS 40.0%
TTCTATGTGATCGAAGCATG+TGG - chr2.2:17530361-17530380 None:intergenic 40.0%
! AGACAAAGAAGCATGGTGTA+TGG + chr2.2:17530533-17530552 MS.gene060592:CDS 40.0%
! ATGGGCTGCATGTTATATGA+AGG + chr2.2:17531171-17531190 MS.gene060592:CDS 40.0%
! GGCATTGTGCAAGATTTTAG+GGG + chr2.2:17531718-17531737 MS.gene060592:CDS 40.0%
! GTGGCATTGTGCAAGATTTT+AGG + chr2.2:17531716-17531735 MS.gene060592:CDS 40.0%
! TAAGCAATCCGTTCTAGACT+CGG - chr2.2:17530246-17530265 None:intergenic 40.0%
! TGAGAAAGCTTGGTTTGACT+TGG + chr2.2:17531087-17531106 MS.gene060592:CDS 40.0%
! TGGAAGAGGCTGAACAATTT+TGG + chr2.2:17530066-17530085 MS.gene060592:CDS 40.0%
! TTATGTCGCTTAGTTCCCTT+TGG - chr2.2:17531994-17532013 None:intergenic 40.0%
!! ATGAAGGAAGCATTGACACT+TGG + chr2.2:17531187-17531206 MS.gene060592:CDS 40.0%
!! TGTGCAAGATTTTAGGGGAA+AGG + chr2.2:17531723-17531742 MS.gene060592:CDS 40.0%
AAGTGGTCTATTGGCATCGT+TGG - chr2.2:17530738-17530757 None:intergenic 45.0%
AGTCCTCACATAAGCTTGCA+AGG + chr2.2:17531353-17531372 MS.gene060592:CDS 45.0%
AGTGCCATGTGCATAAACCA+TGG - chr2.2:17530961-17530980 None:intergenic 45.0%
ATCTTGCACAATGCCACAAC+GGG - chr2.2:17531713-17531732 None:intergenic 45.0%
ATGGCTGATGACTCTGGATT+AGG + chr2.2:17530413-17530432 MS.gene060592:CDS 45.0%
CAACTTATGAGCACACATGC+AGG + chr2.2:17530452-17530471 MS.gene060592:CDS 45.0%
CAAGAAACATGCTCCTCCAA+AGG + chr2.2:17531975-17531994 MS.gene060592:CDS 45.0%
CATAAACCATGGTGAGTCTC+AGG - chr2.2:17530950-17530969 None:intergenic 45.0%
CCCTAGACATTGCTTGACTT+TGG - chr2.2:17530910-17530929 None:intergenic 45.0%
CTCACCATGGTTTATGCACA+TGG + chr2.2:17530954-17530973 MS.gene060592:CDS 45.0%
GGCATCGTTGGTACAATATG+TGG - chr2.2:17530726-17530745 None:intergenic 45.0%
GTTGATTGGAAGCCAAGACT+TGG + chr2.2:17530026-17530045 MS.gene060592:CDS 45.0%
TGGCTGATGACTCTGGATTA+GGG + chr2.2:17530414-17530433 MS.gene060592:CDS 45.0%
TGGTCAGTGAAGATCGTCTT+TGG - chr2.2:17530890-17530909 None:intergenic 45.0%
! ACATGGCACTTGTTGCAGAA+TGG + chr2.2:17530971-17530990 MS.gene060592:CDS 45.0%
! CTTGCTTACGGTTTTCGTGA+GGG + chr2.2:17530089-17530108 MS.gene060592:CDS 45.0%
! TTTTCTTAGGCTGACGCTCA+AGG - chr2.2:17532023-17532042 None:intergenic 45.0%
!! GCAAGATTTTAGGGGAAAGG+AGG + chr2.2:17531726-17531745 MS.gene060592:CDS 45.0%
!!! GGAGGAGCACTTCTTTTCTT+AGG - chr2.2:17532036-17532055 None:intergenic 45.0%
ACGGCGATGTATCGTCATGT+AGG + chr2.2:17530150-17530169 MS.gene060592:CDS 50.0%
GCAGGGCATAGAGCTAATGT+TGG + chr2.2:17530470-17530489 MS.gene060592:CDS 50.0%
! GCTTGCTTACGGTTTTCGTG+AGG + chr2.2:17530088-17530107 MS.gene060592:CDS 50.0%
! TACGGTTTTCGTGAGGGCTT+CGG + chr2.2:17530095-17530114 MS.gene060592:CDS 50.0%
! TGACTCTGGATTAGGGCAGA+AGG + chr2.2:17530421-17530440 MS.gene060592:CDS 50.0%
! TGTCGCTTAGTTCCCTTTGG+AGG - chr2.2:17531991-17532010 None:intergenic 50.0%
GTGATGCCTGAGACTCACCA+TGG + chr2.2:17530941-17530960 MS.gene060592:CDS 55.0%
TGGACAAGAGAAGCCCGTTG+TGG + chr2.2:17531697-17531716 MS.gene060592:CDS 55.0%
AGCATGGTGTATGGCGACGC+TGG + chr2.2:17530542-17530561 MS.gene060592:CDS 60.0%
CCGGAGAGCCGAGTCTAGAA+CGG + chr2.2:17530235-17530254 MS.gene060592:CDS 60.0%
! CCGTTCTAGACTCGGCTCTC+CGG - chr2.2:17530238-17530257 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 17530011 17532104 17530011 ID=MS.gene060592
chr2.2 mRNA 17530011 17532104 17530011 ID=MS.gene060592.t1;Parent=MS.gene060592
chr2.2 exon 17530011 17532104 17530011 ID=MS.gene060592.t1.exon1;Parent=MS.gene060592.t1
chr2.2 CDS 17530011 17532104 17530011 ID=cds.MS.gene060592.t1;Parent=MS.gene060592.t1
Gene Sequence

>MS.gene060592

ATGACATCTTCAAATGTTGATTGGAAGCCAAGACTTGGAATGAAATTTGATACTATGGAAGAGGCTGAACAATTTTGGCTTGCTTACGGTTTTCGTGAGGGCTTCGGAGTTAGAATATGTTTTACAAACAAGAACAAACACGGCGATGTATCGTCATGTAGGTTTGTTTGTTGTAAGGAAGGACTACGGAAGAAAGAGAAAAAATATGCATATGAAGGAAAAATCCGGAGAGCCGAGTCTAGAACGGATTGCTTAGCAAGAATTACACTTTCACGTGAAAATGGAAAGCTGGTCATCCATGAGTTTAAAGAAAAACATAACCATGATCTACTAAAACGAGAGACAACCCACATGCTTCGATCACATAGAAAGATAACTGAAGTACAAGCAAATGAGATTGATATGGCTGATGACTCTGGATTAGGGCAGAAGGCAACTTATCAACTTATGAGCACACATGCAGGGCATAGAGCTAATGTTGGATATACAGAAGTGGATGTAAGAAACTACATCACTACAAAAAGACAAAGAAGCATGGTGTATGGCGACGCTGGATATCTTTCACAGTATTTCCAACAGCAATTGTTGGAGAATCCGTCCTTCTTTCATGCATATCAGATGGATATAGATGAACAAATTACAAACGTGTTCTGGTGTGATGCAAAAATGATTTTGGATTACGGGTATTTTGGTGATGTTGTTTCATTGGACACCACATATTGTACCAACGATGCCAATAGACCACTTGCTTTTTTTTCTGGTTTCAACCATTATAGAGGTACGATCATTTTTGGTGCAGCTCTAATGTATGATGAGACAATTCCATCATTTAAATGGTTGTTTGAAACATTCTTACAAGCACACAACAACAAAAAACCAAAGACGATCTTCACTGACCAAAGTCAAGCAATGTCTAGGGCAATTGAAGAAGTGATGCCTGAGACTCACCATGGTTTATGCACATGGCACTTGTTGCAGAATGGAATTAAACATCTTGGAAATGGAATGAAGAAAGGAGGTTCTTTGCTAAGAGGTTTCAGTAAGTGCATGTATGATATTGACATTGAAGCAGATTTTGAGAAAGCTTGGTTTGACTTGGTAAATGAATATAATCTTCACGATAATAATTGGATCAAGTCAGTTTATGCCATTAAAAAAAAATGGGCTGCATGTTATATGAAGGAAGCATTGACACTTGGCATGCGAAGTACACAAATTAGTGAAAGTTTGAATGCTCACTTCAAAGTTTGTCTGAAACCGAATTTGGGTATCCTACAATTCTTCAAACATTTTGAAAGAATTGTTGAAGAGAAGAGAGAAAAAGAATTGAGTTGTGATTATGAGTCCTCACATAAGCTTGCAAGGTTAATGTATGAAACTTCACCAATACTAATCCAAATGGGAAAGGTATACACACACACTGTATTTGAGTTGTTTCAATATGAGTTTCAATTATTCTTAACTTTATCTGTACCAACTAGACATGAATCTGACTCTCTTTGTGAATATGTCATCACTAAGGAAAATCATGAAGGATCTTGGAGAGTATCATTTAATCGTGTTTCAACTTCCATTACTTGTAGTTGTAAGATGTATGATACATTTGGCATACTTTGTTCACATGCATTAAAAGTGTTTGAATTGAATGATGTTAAGGCAATTCCTGAGAAGTATATTTTAAGAAGGTGGACAAGAGAAGCCCGTTGTGGCATTGTGCAAGATTTTAGGGGAAAGGAGGTTGAACAAGATCCTAAGTTGTCTAGAAATCGAATGTTCAGGCAAGTTGTTTCTAAGTTCATTAGAGCGGCAACTGTAGCATCGTATAGTGAAGATTGCCTCATGCTTCTTGATAATAGTGTAGACGAAATGTTCAAGAAAGCAATGGAATGTCGCACACAAGCTATAGAAAATGATGGTGATCATCCGTCATTTGTGAGTTCTGATGCTATACAACCAAAGGGATTCAAGAAACATGCTCCTCCAAAGGGAACTAAGCGACATAAAAGTTTCCTTGAGCGTCAGCCTAAGAAAAGAAGTGCTCCTCCAAGTAAACATGCTCAAACTAGTCGCGCCCCACCTCAAAGAAATTCATAG
Protein sequence

>MS.gene060592.t1

MTSSNVDWKPRLGMKFDTMEEAEQFWLAYGFREGFGVRICFTNKNKHGDVSSCRFVCCKEGLRKKEKKYAYEGKIRRAESRTDCLARITLSRENGKLVIHEFKEKHNHDLLKRETTHMLRSHRKITEVQANEIDMADDSGLGQKATYQLMSTHAGHRANVGYTEVDVRNYITTKRQRSMVYGDAGYLSQYFQQQLLENPSFFHAYQMDIDEQITNVFWCDAKMILDYGYFGDVVSLDTTYCTNDANRPLAFFSGFNHYRGTIIFGAALMYDETIPSFKWLFETFLQAHNNKKPKTIFTDQSQAMSRAIEEVMPETHHGLCTWHLLQNGIKHLGNGMKKGGSLLRGFSKCMYDIDIEADFEKAWFDLVNEYNLHDNNWIKSVYAIKKKWAACYMKEALTLGMRSTQISESLNAHFKVCLKPNLGILQFFKHFERIVEEKREKELSCDYESSHKLARLMYETSPILIQMGKVYTHTVFELFQYEFQLFLTLSVPTRHESDSLCEYVITKENHEGSWRVSFNRVSTSITCSCKMYDTFGILCSHALKVFELNDVKAIPEKYILRRWTREARCGIVQDFRGKEVEQDPKLSRNRMFRQVVSKFIRAATVASYSEDCLMLLDNSVDEMFKKAMECRTQAIENDGDHPSFVSSDAIQPKGFKKHAPPKGTKRHKSFLERQPKKRSAPPSKHAQTSRAPPQRNS