Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060730.t1 | XP_003605525.1 | 69.8 | 232 | 69 | 1 | 1 | 232 | 1 | 231 | 4.00E-81 | 311.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060730.t1 | Q9FJK3 | 53.8 | 160 | 73 | 1 | 1 | 160 | 1 | 159 | 9.1e-42 | 171.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060730.t1 | G7JN85 | 69.8 | 232 | 69 | 1 | 1 | 232 | 1 | 231 | 2.9e-81 | 311.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene060730.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060730.t1 | MTR_4g032620 | 76.724 | 232 | 53 | 1 | 1 | 232 | 1 | 231 | 2.56e-130 | 367 |
MS.gene060730.t1 | MTR_8g036130 | 58.065 | 248 | 87 | 4 | 1 | 232 | 1 | 247 | 2.66e-87 | 258 |
MS.gene060730.t1 | MTR_4g031910 | 55.603 | 232 | 100 | 2 | 1 | 232 | 1 | 229 | 4.58e-78 | 234 |
MS.gene060730.t1 | MTR_4g032290 | 53.061 | 245 | 88 | 4 | 1 | 232 | 1 | 231 | 1.11e-71 | 218 |
MS.gene060730.t1 | MTR_4g032260 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 7.93e-60 | 186 |
MS.gene060730.t1 | MTR_3g065100 | 48.707 | 232 | 110 | 4 | 1 | 224 | 1 | 231 | 8.52e-58 | 183 |
MS.gene060730.t1 | MTR_3g466980 | 42.381 | 210 | 109 | 2 | 1 | 199 | 1 | 209 | 9.89e-53 | 170 |
MS.gene060730.t1 | MTR_2g035610 | 66.116 | 121 | 41 | 0 | 1 | 121 | 1 | 121 | 2.67e-46 | 150 |
MS.gene060730.t1 | MTR_3g466830 | 44.785 | 163 | 85 | 2 | 3 | 163 | 2 | 161 | 5.98e-45 | 148 |
MS.gene060730.t1 | MTR_5g047580 | 41.667 | 156 | 89 | 2 | 1 | 156 | 1 | 154 | 3.37e-41 | 138 |
MS.gene060730.t1 | MTR_1g090697 | 40.506 | 158 | 92 | 2 | 1 | 158 | 1 | 156 | 1.14e-38 | 132 |
MS.gene060730.t1 | MTR_4g063790 | 42.581 | 155 | 89 | 0 | 1 | 155 | 1 | 155 | 1.21e-38 | 132 |
MS.gene060730.t1 | MTR_3g466890 | 42.308 | 156 | 89 | 1 | 3 | 158 | 2 | 156 | 1.36e-37 | 129 |
MS.gene060730.t1 | MTR_1g077390 | 39.103 | 156 | 93 | 2 | 1 | 156 | 1 | 154 | 1.34e-36 | 126 |
MS.gene060730.t1 | MTR_1g090710 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 1.62e-35 | 124 |
MS.gene060730.t1 | MTR_1g084950 | 42.308 | 156 | 88 | 2 | 1 | 156 | 1 | 154 | 3.24e-35 | 123 |
MS.gene060730.t1 | MTR_3g467080 | 37.821 | 156 | 97 | 0 | 1 | 156 | 1 | 156 | 6.63e-35 | 122 |
MS.gene060730.t1 | MTR_7g011950 | 41.026 | 156 | 90 | 2 | 1 | 156 | 1 | 154 | 1.80e-34 | 121 |
MS.gene060730.t1 | MTR_3g031100 | 38.182 | 165 | 102 | 0 | 1 | 165 | 1 | 165 | 2.63e-34 | 123 |
MS.gene060730.t1 | MTR_4g028800 | 79.167 | 72 | 13 | 1 | 1 | 72 | 1 | 70 | 8.71e-34 | 116 |
MS.gene060730.t1 | MTR_2g016210 | 37.195 | 164 | 103 | 0 | 1 | 164 | 1 | 164 | 1.75e-33 | 121 |
MS.gene060730.t1 | MTR_4g028720 | 41.667 | 156 | 89 | 2 | 1 | 156 | 1 | 154 | 3.15e-33 | 118 |
MS.gene060730.t1 | MTR_1g090783 | 38.961 | 154 | 92 | 2 | 3 | 156 | 2 | 153 | 3.59e-33 | 117 |
MS.gene060730.t1 | MTR_5g075380 | 38.961 | 154 | 93 | 1 | 1 | 154 | 1 | 153 | 5.62e-33 | 117 |
MS.gene060730.t1 | MTR_3g031240 | 32.716 | 162 | 109 | 0 | 1 | 162 | 1 | 162 | 7.69e-30 | 110 |
MS.gene060730.t1 | MTR_1g077320 | 37.179 | 156 | 96 | 2 | 1 | 156 | 1 | 154 | 5.00e-29 | 107 |
MS.gene060730.t1 | MTR_3g465410 | 41.270 | 126 | 74 | 0 | 29 | 154 | 1 | 126 | 2.65e-27 | 102 |
MS.gene060730.t1 | MTR_7g055800 | 47.899 | 119 | 34 | 2 | 1 | 119 | 1 | 91 | 6.28e-27 | 99.8 |
MS.gene060730.t1 | MTR_1g077300 | 38.365 | 159 | 88 | 3 | 1 | 156 | 1 | 152 | 2.85e-26 | 100 |
MS.gene060730.t1 | MTR_3g466900 | 37.008 | 127 | 79 | 1 | 32 | 158 | 2 | 127 | 2.48e-25 | 96.7 |
MS.gene060730.t1 | MTR_3g466930 | 39.062 | 128 | 75 | 3 | 32 | 158 | 2 | 127 | 2.98e-25 | 96.7 |
MS.gene060730.t1 | MTR_5g047560 | 40.678 | 118 | 53 | 2 | 1 | 118 | 1 | 101 | 3.44e-25 | 96.7 |
MS.gene060730.t1 | MTR_2g035580 | 35.256 | 156 | 100 | 1 | 1 | 156 | 1 | 155 | 5.87e-24 | 94.0 |
MS.gene060730.t1 | MTR_4g019670 | 32.278 | 158 | 103 | 2 | 3 | 157 | 6 | 162 | 1.29e-21 | 93.2 |
MS.gene060730.t1 | MTR_7g106510 | 31.250 | 160 | 106 | 2 | 1 | 157 | 4 | 162 | 1.79e-21 | 92.8 |
MS.gene060730.t1 | MTR_4g032270 | 49.000 | 100 | 45 | 4 | 135 | 232 | 36 | 131 | 2.73e-21 | 86.3 |
MS.gene060730.t1 | MTR_7g055940 | 46.667 | 105 | 28 | 2 | 1 | 105 | 1 | 77 | 7.29e-21 | 83.6 |
MS.gene060730.t1 | MTR_7g055790 | 46.364 | 110 | 41 | 1 | 1 | 110 | 59 | 150 | 9.12e-20 | 82.8 |
MS.gene060730.t1 | MTR_3g093900 | 30.636 | 173 | 112 | 4 | 1 | 171 | 4 | 170 | 8.10e-17 | 79.3 |
MS.gene060730.t1 | MTR_6g018920 | 30.000 | 160 | 97 | 6 | 1 | 154 | 1 | 151 | 3.09e-14 | 71.2 |
MS.gene060730.t1 | MTR_1g114730 | 34.188 | 117 | 62 | 4 | 1 | 103 | 1 | 116 | 5.12e-13 | 67.8 |
MS.gene060730.t1 | MTR_2g035590 | 47.126 | 87 | 46 | 0 | 74 | 160 | 1 | 87 | 8.36e-13 | 62.8 |
MS.gene060730.t1 | MTR_6g005450 | 36.441 | 118 | 60 | 5 | 1 | 104 | 1 | 117 | 2.11e-12 | 65.9 |
MS.gene060730.t1 | MTR_6g005440 | 37.288 | 118 | 59 | 5 | 1 | 104 | 1 | 117 | 4.15e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060730.t1 | AT5G48670 | 53.750 | 160 | 73 | 1 | 1 | 160 | 1 | 159 | 3.05e-49 | 164 |
MS.gene060730.t1 | AT5G26630 | 39.267 | 191 | 114 | 2 | 1 | 190 | 1 | 190 | 1.69e-35 | 125 |
MS.gene060730.t1 | AT5G26650 | 41.176 | 153 | 89 | 1 | 4 | 156 | 2 | 153 | 9.89e-35 | 127 |
MS.gene060730.t1 | AT1G65300 | 41.830 | 153 | 88 | 1 | 3 | 155 | 2 | 153 | 1.54e-34 | 124 |
MS.gene060730.t1 | AT5G27960 | 40.523 | 153 | 90 | 1 | 4 | 156 | 2 | 153 | 3.10e-34 | 125 |
MS.gene060730.t1 | AT3G05860 | 39.333 | 150 | 90 | 1 | 1 | 150 | 1 | 149 | 4.27e-33 | 119 |
MS.gene060730.t1 | AT5G27810 | 47.788 | 113 | 59 | 0 | 29 | 141 | 1 | 113 | 5.45e-33 | 116 |
MS.gene060730.t1 | AT3G05860 | 39.333 | 150 | 90 | 1 | 1 | 150 | 1 | 149 | 1.69e-32 | 119 |
MS.gene060730.t1 | AT3G05860 | 39.333 | 150 | 90 | 1 | 1 | 150 | 1 | 149 | 2.20e-32 | 119 |
MS.gene060730.t1 | AT1G65330 | 38.636 | 176 | 95 | 3 | 3 | 173 | 2 | 169 | 5.42e-32 | 118 |
MS.gene060730.t1 | AT1G31630 | 32.759 | 174 | 113 | 3 | 3 | 176 | 2 | 171 | 1.79e-29 | 112 |
MS.gene060730.t1 | AT1G31640 | 34.437 | 151 | 97 | 2 | 3 | 153 | 2 | 150 | 6.86e-28 | 110 |
MS.gene060730.t1 | AT2G28700 | 35.526 | 152 | 93 | 2 | 1 | 150 | 1 | 149 | 1.44e-26 | 105 |
MS.gene060730.t1 | AT5G26580 | 35.484 | 155 | 85 | 2 | 1 | 155 | 1 | 140 | 1.72e-24 | 99.8 |
MS.gene060730.t1 | AT1G22590 | 30.128 | 156 | 105 | 1 | 1 | 156 | 1 | 152 | 1.72e-23 | 93.2 |
MS.gene060730.t1 | AT5G06500 | 35.065 | 154 | 98 | 1 | 1 | 154 | 1 | 152 | 3.34e-21 | 89.0 |
MS.gene060730.t1 | AT2G40210 | 41.667 | 120 | 70 | 0 | 1 | 120 | 1 | 120 | 1.60e-20 | 89.4 |
MS.gene060730.t1 | AT5G55690 | 43.038 | 79 | 38 | 2 | 1 | 72 | 1 | 79 | 8.86e-13 | 66.6 |
MS.gene060730.t1 | AT5G55690 | 43.038 | 79 | 38 | 2 | 1 | 72 | 1 | 79 | 8.86e-13 | 66.6 |
MS.gene060730.t1 | AT5G58890 | 37.374 | 99 | 54 | 3 | 1 | 92 | 1 | 98 | 2.82e-12 | 65.1 |
Find 60 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGCTTGTGCCATAGTTTA+TGG | 0.132446 | 4.3:-68498872 | MS.gene060730:CDS |
CACAACAATGACTAGGAAAA+AGG | 0.228363 | 4.3:-68499002 | None:intergenic |
TCTTCATTACTGAATGTAAA+TGG | 0.245246 | 4.3:+68498482 | None:intergenic |
TCATTGTCGATGATGATTCT+AGG | 0.260008 | 4.3:-68498967 | MS.gene060730:CDS |
TTCATTTAAGGTAGTAGATT+TGG | 0.271423 | 4.3:+68498314 | None:intergenic |
ATGTAAATGGTGGTGGTATT+TGG | 0.308969 | 4.3:+68498495 | None:intergenic |
CATTGAAAGTCAATCTTTCA+TGG | 0.320633 | 4.3:-68498402 | MS.gene060730:CDS |
TACATTCAGTAATGAAGAAA+TGG | 0.368381 | 4.3:-68498477 | MS.gene060730:CDS |
TACCAACCTCCTTCAATTTG+TGG | 0.372241 | 4.3:+68498564 | None:intergenic |
ATGTTGTCGCCATTATTCAT+AGG | 0.380827 | 4.3:+68498422 | None:intergenic |
TATGCAGAATAATATGTCAT+TGG | 0.399656 | 4.3:-68498618 | MS.gene060730:CDS |
GGAAAGCAACATACAATAGA+AGG | 0.409123 | 4.3:-68498946 | MS.gene060730:CDS |
TAATGAAGAAATGGCAATGA+TGG | 0.426450 | 4.3:-68498468 | MS.gene060730:CDS |
GGAGATGAGTCGGTGCCATT+TGG | 0.429830 | 4.3:-68498359 | MS.gene060730:CDS |
TGTGGTGACGGCCAGATCTC+TGG | 0.431268 | 4.3:+68498833 | None:intergenic |
AATTGAAGGAGGTTGGTAGA+AGG | 0.442772 | 4.3:-68498559 | MS.gene060730:CDS |
GAAGGAGGTTGGTAGAAGGT+TGG | 0.444882 | 4.3:-68498555 | MS.gene060730:CDS |
GGAATGCCGCCTATGAATAA+TGG | 0.453131 | 4.3:-68498431 | MS.gene060730:CDS |
CATGAAAGAAAGGGTTCTAA+AGG | 0.457088 | 4.3:-68498729 | MS.gene060730:CDS |
TGGTAGAAGGTTGGAAGCAG+AGG | 0.457415 | 4.3:-68498546 | MS.gene060730:CDS |
GTTGATTGACCACAAATTGA+AGG | 0.458305 | 4.3:-68498573 | MS.gene060730:CDS |
AGAGATCTGGCCGTCACCAC+AGG | 0.458628 | 4.3:-68498831 | MS.gene060730:CDS |
AAGAGACTTACATGAAAGAA+AGG | 0.463147 | 4.3:-68498739 | MS.gene060730:CDS |
ATCTCTGGTTGAGGCTCGTA+GGG | 0.464949 | 4.3:+68498848 | None:intergenic |
TTGATTCAAAACATCTTTGT+TGG | 0.470119 | 4.3:-68498595 | MS.gene060730:CDS |
ACGAGCCTCAACCAGAGATC+TGG | 0.471522 | 4.3:-68498844 | MS.gene060730:CDS |
ATTGAAAGTCAATCTTTCAT+GGG | 0.502132 | 4.3:-68498401 | MS.gene060730:CDS |
CTCGTAGGGTCCATAAACTA+TGG | 0.509841 | 4.3:+68498862 | None:intergenic |
AGTAGATTTGGTAAAACTCT+AGG | 0.510937 | 4.3:+68498326 | None:intergenic |
CTAGGATCGACTTCGCCAAA+TGG | 0.512642 | 4.3:+68498344 | None:intergenic |
GACCACAAATTGAAGGAGGT+TGG | 0.522187 | 4.3:-68498566 | MS.gene060730:CDS |
GATCTCTGGTTGAGGCTCGT+AGG | 0.522551 | 4.3:+68498847 | None:intergenic |
GACGGCCAGATCTCTGGTTG+AGG | 0.531549 | 4.3:+68498839 | None:intergenic |
ATGATGGGTCCTAGCCATGC+TGG | 0.537310 | 4.3:-68498452 | MS.gene060730:CDS |
AAAATTCAGAACAATGAATG+TGG | 0.538041 | 4.3:-68498789 | MS.gene060730:CDS |
GCGGAAGGGTCTACTGAAGA+AGG | 0.542122 | 4.3:-68498924 | MS.gene060730:CDS |
AGAATCATCATCGACAATGA+AGG | 0.542377 | 4.3:+68498970 | None:intergenic |
AAATTCAGAACAATGAATGT+GGG | 0.550450 | 4.3:-68498788 | MS.gene060730:CDS |
AAGGCATGATAACAAGGAGA+TGG | 0.564923 | 4.3:-68498684 | MS.gene060730:CDS |
AACATACAATAGAAGGCGGA+AGG | 0.566279 | 4.3:-68498939 | MS.gene060730:CDS |
AATGAAGAAATGGCAATGAT+GGG | 0.575476 | 4.3:-68498467 | MS.gene060730:CDS |
AGAGACTTACATGAAAGAAA+GGG | 0.577279 | 4.3:-68498738 | MS.gene060730:CDS |
GTTTGGACTCCCTGTGGTGA+CGG | 0.587157 | 4.3:+68498821 | None:intergenic |
GATACAAAGGCATGATAACA+AGG | 0.593660 | 4.3:-68498690 | MS.gene060730:CDS |
AAGAGAAACTAAAGATACAA+AGG | 0.596350 | 4.3:-68498703 | MS.gene060730:CDS |
GGCGGCATTCCAGCATGGCT+AGG | 0.600043 | 4.3:+68498443 | None:intergenic |
AATTCAGAACAATGAATGTG+GGG | 0.603139 | 4.3:-68498787 | MS.gene060730:CDS |
GGCTTGATGATGAATAGTAA+TGG | 0.618975 | 4.3:-68498380 | MS.gene060730:CDS |
TCATAGGCGGCATTCCAGCA+TGG | 0.625874 | 4.3:+68498438 | None:intergenic |
TTACTGAATGTAAATGGTGG+TGG | 0.629493 | 4.3:+68498488 | None:intergenic |
GATTGACCACAAATTGAAGG+AGG | 0.630849 | 4.3:-68498570 | MS.gene060730:CDS |
GAGATCTGGCCGTCACCACA+GGG | 0.642312 | 4.3:-68498830 | MS.gene060730:CDS |
TTGTCGCCATTATTCATAGG+CGG | 0.647988 | 4.3:+68498425 | None:intergenic |
ATTCAGAACAATGAATGTGG+GGG | 0.650757 | 4.3:-68498786 | MS.gene060730:CDS |
GAATAGTAATGGAGATGAGT+CGG | 0.650993 | 4.3:-68498369 | MS.gene060730:CDS |
AGCACTGTTTGGACTCCCTG+TGG | 0.665566 | 4.3:+68498815 | None:intergenic |
ACATACAATAGAAGGCGGAA+GGG | 0.677825 | 4.3:-68498938 | MS.gene060730:CDS |
AAGCAACATACAATAGAAGG+CGG | 0.694844 | 4.3:-68498943 | MS.gene060730:CDS |
TATGAACTAAGCACTCTGTG+TGG | 0.701795 | 4.3:-68498899 | MS.gene060730:CDS |
TCATTACTGAATGTAAATGG+TGG | 0.709945 | 4.3:+68498485 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAATTCAGAACAATGAATG+TGG | - | chr4.3:68498525-68498544 | MS.gene060730:CDS | 25.0% |
! | AAATTCAGAACAATGAATGT+GGG | - | chr4.3:68498526-68498545 | MS.gene060730:CDS | 25.0% |
! | AAGAGAAACTAAAGATACAA+AGG | - | chr4.3:68498611-68498630 | MS.gene060730:CDS | 25.0% |
! | ATTGAAAGTCAATCTTTCAT+GGG | - | chr4.3:68498913-68498932 | MS.gene060730:CDS | 25.0% |
! | TACATTCAGTAATGAAGAAA+TGG | - | chr4.3:68498837-68498856 | MS.gene060730:CDS | 25.0% |
! | TATGCAGAATAATATGTCAT+TGG | - | chr4.3:68498696-68498715 | MS.gene060730:CDS | 25.0% |
! | TCTTCATTACTGAATGTAAA+TGG | + | chr4.3:68498835-68498854 | None:intergenic | 25.0% |
! | TTGATTCAAAACATCTTTGT+TGG | - | chr4.3:68498719-68498738 | MS.gene060730:CDS | 25.0% |
AAGAGACTTACATGAAAGAA+AGG | - | chr4.3:68498575-68498594 | MS.gene060730:CDS | 30.0% | |
AATGAAGAAATGGCAATGAT+GGG | - | chr4.3:68498847-68498866 | MS.gene060730:CDS | 30.0% | |
AATTCAGAACAATGAATGTG+GGG | - | chr4.3:68498527-68498546 | MS.gene060730:CDS | 30.0% | |
AGAGACTTACATGAAAGAAA+GGG | - | chr4.3:68498576-68498595 | MS.gene060730:CDS | 30.0% | |
CATTGAAAGTCAATCTTTCA+TGG | - | chr4.3:68498912-68498931 | MS.gene060730:CDS | 30.0% | |
TAATGAAGAAATGGCAATGA+TGG | - | chr4.3:68498846-68498865 | MS.gene060730:CDS | 30.0% | |
TCATTACTGAATGTAAATGG+TGG | + | chr4.3:68498832-68498851 | None:intergenic | 30.0% | |
! | AGTAGATTTGGTAAAACTCT+AGG | + | chr4.3:68498991-68499010 | None:intergenic | 30.0% |
AAGCAACATACAATAGAAGG+CGG | - | chr4.3:68498371-68498390 | MS.gene060730:CDS | 35.0% | |
AGAATCATCATCGACAATGA+AGG | + | chr4.3:68498347-68498366 | None:intergenic | 35.0% | |
ATGTTGTCGCCATTATTCAT+AGG | + | chr4.3:68498895-68498914 | None:intergenic | 35.0% | |
ATTCAGAACAATGAATGTGG+GGG | - | chr4.3:68498528-68498547 | MS.gene060730:CDS | 35.0% | |
GGAAAGCAACATACAATAGA+AGG | - | chr4.3:68498368-68498387 | MS.gene060730:CDS | 35.0% | |
GTTGATTGACCACAAATTGA+AGG | - | chr4.3:68498741-68498760 | MS.gene060730:CDS | 35.0% | |
TCATTGTCGATGATGATTCT+AGG | - | chr4.3:68498347-68498366 | MS.gene060730:CDS | 35.0% | |
TTACTGAATGTAAATGGTGG+TGG | + | chr4.3:68498829-68498848 | None:intergenic | 35.0% | |
! | ATAGCTTGTGCCATAGTTTA+TGG | - | chr4.3:68498442-68498461 | MS.gene060730:CDS | 35.0% |
! | CATGAAAGAAAGGGTTCTAA+AGG | - | chr4.3:68498585-68498604 | MS.gene060730:CDS | 35.0% |
! | GAATAGTAATGGAGATGAGT+CGG | - | chr4.3:68498945-68498964 | MS.gene060730:CDS | 35.0% |
! | GATACAAAGGCATGATAACA+AGG | - | chr4.3:68498624-68498643 | MS.gene060730:CDS | 35.0% |
!! | ATGTAAATGGTGGTGGTATT+TGG | + | chr4.3:68498822-68498841 | None:intergenic | 35.0% |
!! | GGCTTGATGATGAATAGTAA+TGG | - | chr4.3:68498934-68498953 | MS.gene060730:CDS | 35.0% |
!!! | TGAATTTTGAGAGCACTGTT+TGG | + | chr4.3:68498513-68498532 | None:intergenic | 35.0% |
AACATACAATAGAAGGCGGA+AGG | - | chr4.3:68498375-68498394 | MS.gene060730:CDS | 40.0% | |
AAGGCATGATAACAAGGAGA+TGG | - | chr4.3:68498630-68498649 | MS.gene060730:CDS | 40.0% | |
ACATACAATAGAAGGCGGAA+GGG | - | chr4.3:68498376-68498395 | MS.gene060730:CDS | 40.0% | |
GATTGACCACAAATTGAAGG+AGG | - | chr4.3:68498744-68498763 | MS.gene060730:CDS | 40.0% | |
TACCAACCTCCTTCAATTTG+TGG | + | chr4.3:68498753-68498772 | None:intergenic | 40.0% | |
TATGAACTAAGCACTCTGTG+TGG | - | chr4.3:68498415-68498434 | MS.gene060730:CDS | 40.0% | |
TTGTCGCCATTATTCATAGG+CGG | + | chr4.3:68498892-68498911 | None:intergenic | 40.0% | |
!! | AATTGAAGGAGGTTGGTAGA+AGG | - | chr4.3:68498755-68498774 | MS.gene060730:CDS | 40.0% |
CTCGTAGGGTCCATAAACTA+TGG | + | chr4.3:68498455-68498474 | None:intergenic | 45.0% | |
GACCACAAATTGAAGGAGGT+TGG | - | chr4.3:68498748-68498767 | MS.gene060730:CDS | 45.0% | |
GGAATGCCGCCTATGAATAA+TGG | - | chr4.3:68498883-68498902 | MS.gene060730:CDS | 45.0% | |
ATCTCTGGTTGAGGCTCGTA+GGG | + | chr4.3:68498469-68498488 | None:intergenic | 50.0% | |
GGGGGAGAAGAGCAACAAAA+CGG | - | chr4.3:68498546-68498565 | MS.gene060730:CDS | 50.0% | |
TGGTAGAAGGTTGGAAGCAG+AGG | - | chr4.3:68498768-68498787 | MS.gene060730:CDS | 50.0% | |
! | CTAGGATCGACTTCGCCAAA+TGG | + | chr4.3:68498973-68498992 | None:intergenic | 50.0% |
!! | GAAGGAGGTTGGTAGAAGGT+TGG | - | chr4.3:68498759-68498778 | MS.gene060730:CDS | 50.0% |
ACGAGCCTCAACCAGAGATC+TGG | - | chr4.3:68498470-68498489 | MS.gene060730:CDS | 55.0% | |
AGCACTGTTTGGACTCCCTG+TGG | + | chr4.3:68498502-68498521 | None:intergenic | 55.0% | |
GATCTCTGGTTGAGGCTCGT+AGG | + | chr4.3:68498470-68498489 | None:intergenic | 55.0% | |
GCGGAAGGGTCTACTGAAGA+AGG | - | chr4.3:68498390-68498409 | MS.gene060730:CDS | 55.0% | |
GTTTGGACTCCCTGTGGTGA+CGG | + | chr4.3:68498496-68498515 | None:intergenic | 55.0% | |
TCATAGGCGGCATTCCAGCA+TGG | + | chr4.3:68498879-68498898 | None:intergenic | 55.0% | |
!! | ATGATGGGTCCTAGCCATGC+TGG | - | chr4.3:68498862-68498881 | MS.gene060730:CDS | 55.0% |
!! | GGAGATGAGTCGGTGCCATT+TGG | - | chr4.3:68498955-68498974 | MS.gene060730:CDS | 55.0% |
AGAGATCTGGCCGTCACCAC+AGG | - | chr4.3:68498483-68498502 | MS.gene060730:CDS | 60.0% | |
GACGGCCAGATCTCTGGTTG+AGG | + | chr4.3:68498478-68498497 | None:intergenic | 60.0% | |
GAGATCTGGCCGTCACCACA+GGG | - | chr4.3:68498484-68498503 | MS.gene060730:CDS | 60.0% | |
!! | TGTGGTGACGGCCAGATCTC+TGG | + | chr4.3:68498484-68498503 | None:intergenic | 60.0% |
GGCGGCATTCCAGCATGGCT+AGG | + | chr4.3:68498874-68498893 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 68498319 | 68499017 | 68498319 | ID=MS.gene060730 |
chr4.3 | mRNA | 68498319 | 68499017 | 68498319 | ID=MS.gene060730.t1;Parent=MS.gene060730 |
chr4.3 | exon | 68498319 | 68499017 | 68498319 | ID=MS.gene060730.t1.exon1;Parent=MS.gene060730.t1 |
chr4.3 | CDS | 68498319 | 68499017 | 68498319 | ID=cds.MS.gene060730.t1;Parent=MS.gene060730.t1 |
Gene Sequence |
Protein sequence |