Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060731.t1 | XP_003605525.1 | 69.8 | 232 | 69 | 1 | 1 | 232 | 1 | 231 | 4.00E-81 | 311.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060731.t1 | Q9FJK3 | 53.8 | 160 | 73 | 1 | 1 | 160 | 1 | 159 | 9.1e-42 | 171.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060731.t1 | G7JN85 | 69.8 | 232 | 69 | 1 | 1 | 232 | 1 | 231 | 2.9e-81 | 311.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene060731.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060731.t1 | MTR_4g032620 | 76.724 | 232 | 53 | 1 | 1 | 232 | 1 | 231 | 2.56e-130 | 367 |
MS.gene060731.t1 | MTR_8g036130 | 58.065 | 248 | 87 | 4 | 1 | 232 | 1 | 247 | 2.66e-87 | 258 |
MS.gene060731.t1 | MTR_4g031910 | 55.603 | 232 | 100 | 2 | 1 | 232 | 1 | 229 | 4.58e-78 | 234 |
MS.gene060731.t1 | MTR_4g032290 | 53.061 | 245 | 88 | 4 | 1 | 232 | 1 | 231 | 1.11e-71 | 218 |
MS.gene060731.t1 | MTR_4g032260 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 7.93e-60 | 186 |
MS.gene060731.t1 | MTR_3g065100 | 48.707 | 232 | 110 | 4 | 1 | 224 | 1 | 231 | 8.52e-58 | 183 |
MS.gene060731.t1 | MTR_3g466980 | 42.381 | 210 | 109 | 2 | 1 | 199 | 1 | 209 | 9.89e-53 | 170 |
MS.gene060731.t1 | MTR_2g035610 | 66.116 | 121 | 41 | 0 | 1 | 121 | 1 | 121 | 2.67e-46 | 150 |
MS.gene060731.t1 | MTR_3g466830 | 44.785 | 163 | 85 | 2 | 3 | 163 | 2 | 161 | 5.98e-45 | 148 |
MS.gene060731.t1 | MTR_5g047580 | 41.667 | 156 | 89 | 2 | 1 | 156 | 1 | 154 | 3.37e-41 | 138 |
MS.gene060731.t1 | MTR_1g090697 | 40.506 | 158 | 92 | 2 | 1 | 158 | 1 | 156 | 1.14e-38 | 132 |
MS.gene060731.t1 | MTR_4g063790 | 42.581 | 155 | 89 | 0 | 1 | 155 | 1 | 155 | 1.21e-38 | 132 |
MS.gene060731.t1 | MTR_3g466890 | 42.308 | 156 | 89 | 1 | 3 | 158 | 2 | 156 | 1.36e-37 | 129 |
MS.gene060731.t1 | MTR_1g077390 | 39.103 | 156 | 93 | 2 | 1 | 156 | 1 | 154 | 1.34e-36 | 126 |
MS.gene060731.t1 | MTR_1g090710 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 1.62e-35 | 124 |
MS.gene060731.t1 | MTR_1g084950 | 42.308 | 156 | 88 | 2 | 1 | 156 | 1 | 154 | 3.24e-35 | 123 |
MS.gene060731.t1 | MTR_3g467080 | 37.821 | 156 | 97 | 0 | 1 | 156 | 1 | 156 | 6.63e-35 | 122 |
MS.gene060731.t1 | MTR_7g011950 | 41.026 | 156 | 90 | 2 | 1 | 156 | 1 | 154 | 1.80e-34 | 121 |
MS.gene060731.t1 | MTR_3g031100 | 38.182 | 165 | 102 | 0 | 1 | 165 | 1 | 165 | 2.63e-34 | 123 |
MS.gene060731.t1 | MTR_4g028800 | 79.167 | 72 | 13 | 1 | 1 | 72 | 1 | 70 | 8.71e-34 | 116 |
MS.gene060731.t1 | MTR_2g016210 | 37.195 | 164 | 103 | 0 | 1 | 164 | 1 | 164 | 1.75e-33 | 121 |
MS.gene060731.t1 | MTR_4g028720 | 41.667 | 156 | 89 | 2 | 1 | 156 | 1 | 154 | 3.15e-33 | 118 |
MS.gene060731.t1 | MTR_1g090783 | 38.961 | 154 | 92 | 2 | 3 | 156 | 2 | 153 | 3.59e-33 | 117 |
MS.gene060731.t1 | MTR_5g075380 | 38.961 | 154 | 93 | 1 | 1 | 154 | 1 | 153 | 5.62e-33 | 117 |
MS.gene060731.t1 | MTR_3g031240 | 32.716 | 162 | 109 | 0 | 1 | 162 | 1 | 162 | 7.69e-30 | 110 |
MS.gene060731.t1 | MTR_1g077320 | 37.179 | 156 | 96 | 2 | 1 | 156 | 1 | 154 | 5.00e-29 | 107 |
MS.gene060731.t1 | MTR_3g465410 | 41.270 | 126 | 74 | 0 | 29 | 154 | 1 | 126 | 2.65e-27 | 102 |
MS.gene060731.t1 | MTR_7g055800 | 47.899 | 119 | 34 | 2 | 1 | 119 | 1 | 91 | 6.28e-27 | 99.8 |
MS.gene060731.t1 | MTR_1g077300 | 38.365 | 159 | 88 | 3 | 1 | 156 | 1 | 152 | 2.85e-26 | 100 |
MS.gene060731.t1 | MTR_3g466900 | 37.008 | 127 | 79 | 1 | 32 | 158 | 2 | 127 | 2.48e-25 | 96.7 |
MS.gene060731.t1 | MTR_3g466930 | 39.062 | 128 | 75 | 3 | 32 | 158 | 2 | 127 | 2.98e-25 | 96.7 |
MS.gene060731.t1 | MTR_5g047560 | 40.678 | 118 | 53 | 2 | 1 | 118 | 1 | 101 | 3.44e-25 | 96.7 |
MS.gene060731.t1 | MTR_2g035580 | 35.256 | 156 | 100 | 1 | 1 | 156 | 1 | 155 | 5.87e-24 | 94.0 |
MS.gene060731.t1 | MTR_4g019670 | 32.278 | 158 | 103 | 2 | 3 | 157 | 6 | 162 | 1.29e-21 | 93.2 |
MS.gene060731.t1 | MTR_7g106510 | 31.250 | 160 | 106 | 2 | 1 | 157 | 4 | 162 | 1.79e-21 | 92.8 |
MS.gene060731.t1 | MTR_4g032270 | 49.000 | 100 | 45 | 4 | 135 | 232 | 36 | 131 | 2.73e-21 | 86.3 |
MS.gene060731.t1 | MTR_7g055940 | 46.667 | 105 | 28 | 2 | 1 | 105 | 1 | 77 | 7.29e-21 | 83.6 |
MS.gene060731.t1 | MTR_7g055790 | 46.364 | 110 | 41 | 1 | 1 | 110 | 59 | 150 | 9.12e-20 | 82.8 |
MS.gene060731.t1 | MTR_3g093900 | 30.636 | 173 | 112 | 4 | 1 | 171 | 4 | 170 | 8.10e-17 | 79.3 |
MS.gene060731.t1 | MTR_6g018920 | 30.000 | 160 | 97 | 6 | 1 | 154 | 1 | 151 | 3.09e-14 | 71.2 |
MS.gene060731.t1 | MTR_1g114730 | 34.188 | 117 | 62 | 4 | 1 | 103 | 1 | 116 | 5.12e-13 | 67.8 |
MS.gene060731.t1 | MTR_2g035590 | 47.126 | 87 | 46 | 0 | 74 | 160 | 1 | 87 | 8.36e-13 | 62.8 |
MS.gene060731.t1 | MTR_6g005450 | 36.441 | 118 | 60 | 5 | 1 | 104 | 1 | 117 | 2.11e-12 | 65.9 |
MS.gene060731.t1 | MTR_6g005440 | 37.288 | 118 | 59 | 5 | 1 | 104 | 1 | 117 | 4.15e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060731.t1 | AT5G48670 | 53.750 | 160 | 73 | 1 | 1 | 160 | 1 | 159 | 3.05e-49 | 164 |
MS.gene060731.t1 | AT5G26630 | 39.267 | 191 | 114 | 2 | 1 | 190 | 1 | 190 | 1.69e-35 | 125 |
MS.gene060731.t1 | AT5G26650 | 41.176 | 153 | 89 | 1 | 4 | 156 | 2 | 153 | 9.89e-35 | 127 |
MS.gene060731.t1 | AT1G65300 | 41.830 | 153 | 88 | 1 | 3 | 155 | 2 | 153 | 1.54e-34 | 124 |
MS.gene060731.t1 | AT5G27960 | 40.523 | 153 | 90 | 1 | 4 | 156 | 2 | 153 | 3.10e-34 | 125 |
MS.gene060731.t1 | AT3G05860 | 39.333 | 150 | 90 | 1 | 1 | 150 | 1 | 149 | 4.27e-33 | 119 |
MS.gene060731.t1 | AT5G27810 | 47.788 | 113 | 59 | 0 | 29 | 141 | 1 | 113 | 5.45e-33 | 116 |
MS.gene060731.t1 | AT3G05860 | 39.333 | 150 | 90 | 1 | 1 | 150 | 1 | 149 | 1.69e-32 | 119 |
MS.gene060731.t1 | AT3G05860 | 39.333 | 150 | 90 | 1 | 1 | 150 | 1 | 149 | 2.20e-32 | 119 |
MS.gene060731.t1 | AT1G65330 | 38.636 | 176 | 95 | 3 | 3 | 173 | 2 | 169 | 5.42e-32 | 118 |
MS.gene060731.t1 | AT1G31630 | 32.759 | 174 | 113 | 3 | 3 | 176 | 2 | 171 | 1.79e-29 | 112 |
MS.gene060731.t1 | AT1G31640 | 34.437 | 151 | 97 | 2 | 3 | 153 | 2 | 150 | 6.86e-28 | 110 |
MS.gene060731.t1 | AT2G28700 | 35.526 | 152 | 93 | 2 | 1 | 150 | 1 | 149 | 1.44e-26 | 105 |
MS.gene060731.t1 | AT5G26580 | 35.484 | 155 | 85 | 2 | 1 | 155 | 1 | 140 | 1.72e-24 | 99.8 |
MS.gene060731.t1 | AT1G22590 | 30.128 | 156 | 105 | 1 | 1 | 156 | 1 | 152 | 1.72e-23 | 93.2 |
MS.gene060731.t1 | AT5G06500 | 35.065 | 154 | 98 | 1 | 1 | 154 | 1 | 152 | 3.34e-21 | 89.0 |
MS.gene060731.t1 | AT2G40210 | 41.667 | 120 | 70 | 0 | 1 | 120 | 1 | 120 | 1.60e-20 | 89.4 |
MS.gene060731.t1 | AT5G55690 | 43.038 | 79 | 38 | 2 | 1 | 72 | 1 | 79 | 8.86e-13 | 66.6 |
MS.gene060731.t1 | AT5G55690 | 43.038 | 79 | 38 | 2 | 1 | 72 | 1 | 79 | 8.86e-13 | 66.6 |
MS.gene060731.t1 | AT5G58890 | 37.374 | 99 | 54 | 3 | 1 | 92 | 1 | 98 | 2.82e-12 | 65.1 |
Find 60 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGCTTGTGCCATAGTTTA+TGG | 0.132446 | 4.4:-71603176 | MS.gene060731:CDS |
CACAACAATGACTAGGAAAA+AGG | 0.228363 | 4.4:-71603306 | None:intergenic |
TCTTCATTACTGAATGTAAA+TGG | 0.245246 | 4.4:+71602786 | None:intergenic |
TCATTGTCGATGATGATTCT+AGG | 0.260008 | 4.4:-71603271 | MS.gene060731:CDS |
TTCATTTAAGGTAGTAGATT+TGG | 0.271423 | 4.4:+71602618 | None:intergenic |
ATGTAAATGGTGGTGGTATT+TGG | 0.308969 | 4.4:+71602799 | None:intergenic |
CATTGAAAGTCAATCTTTCA+TGG | 0.320633 | 4.4:-71602706 | MS.gene060731:CDS |
TACATTCAGTAATGAAGAAA+TGG | 0.368381 | 4.4:-71602781 | MS.gene060731:CDS |
TACCAACCTCCTTCAATTTG+TGG | 0.372241 | 4.4:+71602868 | None:intergenic |
ATGTTGTCGCCATTATTCAT+AGG | 0.380827 | 4.4:+71602726 | None:intergenic |
TATGCAGAATAATATGTCAT+TGG | 0.399656 | 4.4:-71602922 | MS.gene060731:CDS |
GGAAAGCAACATACAATAGA+AGG | 0.409123 | 4.4:-71603250 | MS.gene060731:CDS |
TAATGAAGAAATGGCAATGA+TGG | 0.426450 | 4.4:-71602772 | MS.gene060731:CDS |
GGAGATGAGTCGGTGCCATT+TGG | 0.429830 | 4.4:-71602663 | MS.gene060731:CDS |
TGTGGTGACGGCCAGATCTC+TGG | 0.431268 | 4.4:+71603137 | None:intergenic |
AATTGAAGGAGGTTGGTAGA+AGG | 0.442772 | 4.4:-71602863 | MS.gene060731:CDS |
GAAGGAGGTTGGTAGAAGGT+TGG | 0.444882 | 4.4:-71602859 | MS.gene060731:CDS |
GGAATGCCGCCTATGAATAA+TGG | 0.453131 | 4.4:-71602735 | MS.gene060731:CDS |
CATGAAAGAAAGGGTTCTAA+AGG | 0.457088 | 4.4:-71603033 | MS.gene060731:CDS |
TGGTAGAAGGTTGGAAGCAG+AGG | 0.457415 | 4.4:-71602850 | MS.gene060731:CDS |
GTTGATTGACCACAAATTGA+AGG | 0.458305 | 4.4:-71602877 | MS.gene060731:CDS |
AGAGATCTGGCCGTCACCAC+AGG | 0.458628 | 4.4:-71603135 | MS.gene060731:CDS |
AAGAGACTTACATGAAAGAA+AGG | 0.463147 | 4.4:-71603043 | MS.gene060731:CDS |
ATCTCTGGTTGAGGCTCGTA+GGG | 0.464949 | 4.4:+71603152 | None:intergenic |
TTGATTCAAAACATCTTTGT+TGG | 0.470119 | 4.4:-71602899 | MS.gene060731:CDS |
ACGAGCCTCAACCAGAGATC+TGG | 0.471522 | 4.4:-71603148 | MS.gene060731:CDS |
ATTGAAAGTCAATCTTTCAT+GGG | 0.502132 | 4.4:-71602705 | MS.gene060731:CDS |
CTCGTAGGGTCCATAAACTA+TGG | 0.509841 | 4.4:+71603166 | None:intergenic |
AGTAGATTTGGTAAAACTCT+AGG | 0.510937 | 4.4:+71602630 | None:intergenic |
CTAGGATCGACTTCGCCAAA+TGG | 0.512642 | 4.4:+71602648 | None:intergenic |
GACCACAAATTGAAGGAGGT+TGG | 0.522187 | 4.4:-71602870 | MS.gene060731:CDS |
GATCTCTGGTTGAGGCTCGT+AGG | 0.522551 | 4.4:+71603151 | None:intergenic |
GACGGCCAGATCTCTGGTTG+AGG | 0.531549 | 4.4:+71603143 | None:intergenic |
ATGATGGGTCCTAGCCATGC+TGG | 0.537310 | 4.4:-71602756 | MS.gene060731:CDS |
AAAATTCAGAACAATGAATG+TGG | 0.538041 | 4.4:-71603093 | MS.gene060731:CDS |
GCGGAAGGGTCTACTGAAGA+AGG | 0.542122 | 4.4:-71603228 | MS.gene060731:CDS |
AGAATCATCATCGACAATGA+AGG | 0.542377 | 4.4:+71603274 | None:intergenic |
AAATTCAGAACAATGAATGT+GGG | 0.550450 | 4.4:-71603092 | MS.gene060731:CDS |
AAGGCATGATAACAAGGAGA+TGG | 0.564923 | 4.4:-71602988 | MS.gene060731:CDS |
AACATACAATAGAAGGCGGA+AGG | 0.566279 | 4.4:-71603243 | MS.gene060731:CDS |
AATGAAGAAATGGCAATGAT+GGG | 0.575476 | 4.4:-71602771 | MS.gene060731:CDS |
AGAGACTTACATGAAAGAAA+GGG | 0.577279 | 4.4:-71603042 | MS.gene060731:CDS |
GTTTGGACTCCCTGTGGTGA+CGG | 0.587157 | 4.4:+71603125 | None:intergenic |
GATACAAAGGCATGATAACA+AGG | 0.593660 | 4.4:-71602994 | MS.gene060731:CDS |
AAGAGAAACTAAAGATACAA+AGG | 0.596350 | 4.4:-71603007 | MS.gene060731:CDS |
GGCGGCATTCCAGCATGGCT+AGG | 0.600043 | 4.4:+71602747 | None:intergenic |
AATTCAGAACAATGAATGTG+GGG | 0.603139 | 4.4:-71603091 | MS.gene060731:CDS |
GGCTTGATGATGAATAGTAA+TGG | 0.618975 | 4.4:-71602684 | MS.gene060731:CDS |
TCATAGGCGGCATTCCAGCA+TGG | 0.625874 | 4.4:+71602742 | None:intergenic |
TTACTGAATGTAAATGGTGG+TGG | 0.629493 | 4.4:+71602792 | None:intergenic |
GATTGACCACAAATTGAAGG+AGG | 0.630849 | 4.4:-71602874 | MS.gene060731:CDS |
GAGATCTGGCCGTCACCACA+GGG | 0.642312 | 4.4:-71603134 | MS.gene060731:CDS |
TTGTCGCCATTATTCATAGG+CGG | 0.647988 | 4.4:+71602729 | None:intergenic |
ATTCAGAACAATGAATGTGG+GGG | 0.650757 | 4.4:-71603090 | MS.gene060731:CDS |
GAATAGTAATGGAGATGAGT+CGG | 0.650993 | 4.4:-71602673 | MS.gene060731:CDS |
AGCACTGTTTGGACTCCCTG+TGG | 0.665566 | 4.4:+71603119 | None:intergenic |
ACATACAATAGAAGGCGGAA+GGG | 0.677825 | 4.4:-71603242 | MS.gene060731:CDS |
AAGCAACATACAATAGAAGG+CGG | 0.694844 | 4.4:-71603247 | MS.gene060731:CDS |
TATGAACTAAGCACTCTGTG+TGG | 0.701795 | 4.4:-71603203 | MS.gene060731:CDS |
TCATTACTGAATGTAAATGG+TGG | 0.709945 | 4.4:+71602789 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAATTCAGAACAATGAATG+TGG | - | chr4.4:71602829-71602848 | MS.gene060731:CDS | 25.0% |
! | AAATTCAGAACAATGAATGT+GGG | - | chr4.4:71602830-71602849 | MS.gene060731:CDS | 25.0% |
! | AAGAGAAACTAAAGATACAA+AGG | - | chr4.4:71602915-71602934 | MS.gene060731:CDS | 25.0% |
! | ATTGAAAGTCAATCTTTCAT+GGG | - | chr4.4:71603217-71603236 | MS.gene060731:CDS | 25.0% |
! | TACATTCAGTAATGAAGAAA+TGG | - | chr4.4:71603141-71603160 | MS.gene060731:CDS | 25.0% |
! | TATGCAGAATAATATGTCAT+TGG | - | chr4.4:71603000-71603019 | MS.gene060731:CDS | 25.0% |
! | TCTTCATTACTGAATGTAAA+TGG | + | chr4.4:71603139-71603158 | None:intergenic | 25.0% |
! | TTGATTCAAAACATCTTTGT+TGG | - | chr4.4:71603023-71603042 | MS.gene060731:CDS | 25.0% |
AAGAGACTTACATGAAAGAA+AGG | - | chr4.4:71602879-71602898 | MS.gene060731:CDS | 30.0% | |
AATGAAGAAATGGCAATGAT+GGG | - | chr4.4:71603151-71603170 | MS.gene060731:CDS | 30.0% | |
AATTCAGAACAATGAATGTG+GGG | - | chr4.4:71602831-71602850 | MS.gene060731:CDS | 30.0% | |
AGAGACTTACATGAAAGAAA+GGG | - | chr4.4:71602880-71602899 | MS.gene060731:CDS | 30.0% | |
CATTGAAAGTCAATCTTTCA+TGG | - | chr4.4:71603216-71603235 | MS.gene060731:CDS | 30.0% | |
TAATGAAGAAATGGCAATGA+TGG | - | chr4.4:71603150-71603169 | MS.gene060731:CDS | 30.0% | |
TCATTACTGAATGTAAATGG+TGG | + | chr4.4:71603136-71603155 | None:intergenic | 30.0% | |
! | AGTAGATTTGGTAAAACTCT+AGG | + | chr4.4:71603295-71603314 | None:intergenic | 30.0% |
AAGCAACATACAATAGAAGG+CGG | - | chr4.4:71602675-71602694 | MS.gene060731:CDS | 35.0% | |
AGAATCATCATCGACAATGA+AGG | + | chr4.4:71602651-71602670 | None:intergenic | 35.0% | |
ATGTTGTCGCCATTATTCAT+AGG | + | chr4.4:71603199-71603218 | None:intergenic | 35.0% | |
ATTCAGAACAATGAATGTGG+GGG | - | chr4.4:71602832-71602851 | MS.gene060731:CDS | 35.0% | |
GGAAAGCAACATACAATAGA+AGG | - | chr4.4:71602672-71602691 | MS.gene060731:CDS | 35.0% | |
GTTGATTGACCACAAATTGA+AGG | - | chr4.4:71603045-71603064 | MS.gene060731:CDS | 35.0% | |
TCATTGTCGATGATGATTCT+AGG | - | chr4.4:71602651-71602670 | MS.gene060731:CDS | 35.0% | |
TTACTGAATGTAAATGGTGG+TGG | + | chr4.4:71603133-71603152 | None:intergenic | 35.0% | |
! | ATAGCTTGTGCCATAGTTTA+TGG | - | chr4.4:71602746-71602765 | MS.gene060731:CDS | 35.0% |
! | CATGAAAGAAAGGGTTCTAA+AGG | - | chr4.4:71602889-71602908 | MS.gene060731:CDS | 35.0% |
! | GAATAGTAATGGAGATGAGT+CGG | - | chr4.4:71603249-71603268 | MS.gene060731:CDS | 35.0% |
! | GATACAAAGGCATGATAACA+AGG | - | chr4.4:71602928-71602947 | MS.gene060731:CDS | 35.0% |
!! | ATGTAAATGGTGGTGGTATT+TGG | + | chr4.4:71603126-71603145 | None:intergenic | 35.0% |
!! | GGCTTGATGATGAATAGTAA+TGG | - | chr4.4:71603238-71603257 | MS.gene060731:CDS | 35.0% |
!!! | TGAATTTTGAGAGCACTGTT+TGG | + | chr4.4:71602817-71602836 | None:intergenic | 35.0% |
AACATACAATAGAAGGCGGA+AGG | - | chr4.4:71602679-71602698 | MS.gene060731:CDS | 40.0% | |
AAGGCATGATAACAAGGAGA+TGG | - | chr4.4:71602934-71602953 | MS.gene060731:CDS | 40.0% | |
ACATACAATAGAAGGCGGAA+GGG | - | chr4.4:71602680-71602699 | MS.gene060731:CDS | 40.0% | |
GATTGACCACAAATTGAAGG+AGG | - | chr4.4:71603048-71603067 | MS.gene060731:CDS | 40.0% | |
TACCAACCTCCTTCAATTTG+TGG | + | chr4.4:71603057-71603076 | None:intergenic | 40.0% | |
TATGAACTAAGCACTCTGTG+TGG | - | chr4.4:71602719-71602738 | MS.gene060731:CDS | 40.0% | |
TTGTCGCCATTATTCATAGG+CGG | + | chr4.4:71603196-71603215 | None:intergenic | 40.0% | |
!! | AATTGAAGGAGGTTGGTAGA+AGG | - | chr4.4:71603059-71603078 | MS.gene060731:CDS | 40.0% |
CTCGTAGGGTCCATAAACTA+TGG | + | chr4.4:71602759-71602778 | None:intergenic | 45.0% | |
GACCACAAATTGAAGGAGGT+TGG | - | chr4.4:71603052-71603071 | MS.gene060731:CDS | 45.0% | |
GGAATGCCGCCTATGAATAA+TGG | - | chr4.4:71603187-71603206 | MS.gene060731:CDS | 45.0% | |
ATCTCTGGTTGAGGCTCGTA+GGG | + | chr4.4:71602773-71602792 | None:intergenic | 50.0% | |
GGGGGAGAAGAGCAACAAAA+CGG | - | chr4.4:71602850-71602869 | MS.gene060731:CDS | 50.0% | |
TGGTAGAAGGTTGGAAGCAG+AGG | - | chr4.4:71603072-71603091 | MS.gene060731:CDS | 50.0% | |
! | CTAGGATCGACTTCGCCAAA+TGG | + | chr4.4:71603277-71603296 | None:intergenic | 50.0% |
!! | GAAGGAGGTTGGTAGAAGGT+TGG | - | chr4.4:71603063-71603082 | MS.gene060731:CDS | 50.0% |
ACGAGCCTCAACCAGAGATC+TGG | - | chr4.4:71602774-71602793 | MS.gene060731:CDS | 55.0% | |
AGCACTGTTTGGACTCCCTG+TGG | + | chr4.4:71602806-71602825 | None:intergenic | 55.0% | |
GATCTCTGGTTGAGGCTCGT+AGG | + | chr4.4:71602774-71602793 | None:intergenic | 55.0% | |
GCGGAAGGGTCTACTGAAGA+AGG | - | chr4.4:71602694-71602713 | MS.gene060731:CDS | 55.0% | |
GTTTGGACTCCCTGTGGTGA+CGG | + | chr4.4:71602800-71602819 | None:intergenic | 55.0% | |
TCATAGGCGGCATTCCAGCA+TGG | + | chr4.4:71603183-71603202 | None:intergenic | 55.0% | |
!! | ATGATGGGTCCTAGCCATGC+TGG | - | chr4.4:71603166-71603185 | MS.gene060731:CDS | 55.0% |
!! | GGAGATGAGTCGGTGCCATT+TGG | - | chr4.4:71603259-71603278 | MS.gene060731:CDS | 55.0% |
AGAGATCTGGCCGTCACCAC+AGG | - | chr4.4:71602787-71602806 | MS.gene060731:CDS | 60.0% | |
GACGGCCAGATCTCTGGTTG+AGG | + | chr4.4:71602782-71602801 | None:intergenic | 60.0% | |
GAGATCTGGCCGTCACCACA+GGG | - | chr4.4:71602788-71602807 | MS.gene060731:CDS | 60.0% | |
!! | TGTGGTGACGGCCAGATCTC+TGG | + | chr4.4:71602788-71602807 | None:intergenic | 60.0% |
GGCGGCATTCCAGCATGGCT+AGG | + | chr4.4:71603178-71603197 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 71602623 | 71603321 | 71602623 | ID=MS.gene060731 |
chr4.4 | mRNA | 71602623 | 71603321 | 71602623 | ID=MS.gene060731.t1;Parent=MS.gene060731 |
chr4.4 | exon | 71602623 | 71603321 | 71602623 | ID=MS.gene060731.t1.exon1;Parent=MS.gene060731.t1 |
chr4.4 | CDS | 71602623 | 71603321 | 71602623 | ID=cds.MS.gene060731.t1;Parent=MS.gene060731.t1 |
Gene Sequence |
Protein sequence |