AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060901

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060901.t1 MTR_1g013180 94.539 531 26 2 1 529 152 681 0.0 996
MS.gene060901.t1 MTR_1g013170 64.943 522 102 13 1 467 1 496 0.0 575
MS.gene060901.t1 MTR_7g117705 59.594 542 119 12 1 524 1 460 0.0 552
MS.gene060901.t1 MTR_3g106220 53.917 434 154 13 3 413 6 416 2.06e-133 402
MS.gene060901.t1 MTR_2g450070 51.453 344 142 6 3 325 16 355 4.63e-97 308
MS.gene060901.t1 MTR_2g450070 51.453 344 142 6 3 325 16 355 9.21e-97 308
MS.gene060901.t1 MTR_4g121020 56.522 253 108 2 2 254 28 278 1.12e-86 281
MS.gene060901.t1 MTR_4g121020 56.522 253 108 2 2 254 28 278 1.25e-86 281
MS.gene060901.t1 MTR_2g034960 54.264 258 114 1 1 258 25 278 1.13e-84 274
MS.gene060901.t1 MTR_4g131600 47.516 322 158 5 1 322 16 326 1.65e-84 273
MS.gene060901.t1 MTR_1g032570 51.923 260 108 3 4 253 10 262 5.04e-82 268
MS.gene060901.t1 MTR_8g079940 56.048 248 103 3 3 248 23 266 1.11e-81 265
MS.gene060901.t1 MTR_3g086100 55.242 248 103 2 5 248 13 256 1.56e-81 265
MS.gene060901.t1 MTR_4g131580 49.186 307 146 5 5 310 17 314 1.69e-81 266
MS.gene060901.t1 MTR_4g131570 47.077 325 156 5 3 322 15 328 1.00e-79 261
MS.gene060901.t1 MTR_1g013160 86.486 148 20 0 67 214 1 148 2.96e-76 238
MS.gene060901.t1 MTR_3g102590 50.588 255 71 3 2 253 5 207 3.77e-67 217
MS.gene060901.t1 MTR_3g102590 50.417 240 66 2 2 240 5 192 3.33e-62 202
MS.gene060901.t1 MTR_3g102600 41.745 321 89 8 1 321 4 226 2.11e-58 194
MS.gene060901.t1 MTR_3g086100 53.968 189 79 2 64 248 1 185 9.19e-56 195
MS.gene060901.t1 MTR_1g032570 50.500 200 82 3 64 253 1 193 2.39e-55 195
MS.gene060901.t1 MTR_3g102600 44.813 241 71 3 2 242 5 183 5.81e-52 175
MS.gene060901.t1 MTR_4g021760 39.095 243 120 4 5 247 11 225 3.93e-50 174
MS.gene060901.t1 MTR_4g021790 38.800 250 125 5 2 251 7 228 3.97e-47 165
MS.gene060901.t1 MTR_4g021855 37.200 250 129 4 2 251 7 228 2.09e-45 162
MS.gene060901.t1 MTR_4g021845 36.402 239 124 3 2 240 7 217 1.59e-44 157
MS.gene060901.t1 MTR_0450s0040 38.075 239 127 3 9 247 8 225 2.75e-43 157
MS.gene060901.t1 MTR_3g102600 38.182 275 72 7 47 321 1 177 8.94e-42 148
MS.gene060901.t1 MTR_4g121020 47.953 171 87 2 84 254 6 174 3.91e-41 156
MS.gene060901.t1 MTR_8g105600 33.841 328 186 9 5 318 9 319 1.03e-39 152
MS.gene060901.t1 MTR_7g026400 37.273 220 120 3 32 250 14 216 2.70e-35 140
MS.gene060901.t1 MTR_6g045327 31.579 247 139 3 4 249 13 230 1.40e-32 129
MS.gene060901.t1 MTR_3g102600 39.286 196 57 3 47 242 1 134 3.82e-32 120
MS.gene060901.t1 MTR_5g055260 34.818 247 106 8 2 248 7 198 8.80e-31 120
MS.gene060901.t1 MTR_8g032710 29.588 267 164 5 8 254 20 282 1.24e-26 113
MS.gene060901.t1 MTR_4g064730 45.192 104 57 0 162 265 102 205 3.78e-22 97.4
MS.gene060901.t1 MTR_3g092780 34.532 139 86 2 9 143 56 193 4.49e-22 100
MS.gene060901.t1 MTR_3g092780 34.532 139 86 2 9 143 56 193 5.11e-22 100
MS.gene060901.t1 MTR_6g016850 35.433 127 79 2 3 127 7 132 2.15e-21 91.7
MS.gene060901.t1 MTR_3g092780 34.286 140 86 3 9 143 56 194 9.07e-21 96.3
MS.gene060901.t1 MTR_3g092780 34.286 140 86 3 9 143 56 194 1.02e-20 96.3
MS.gene060901.t1 MTR_7g118260 35.220 159 89 4 2 152 5 157 1.33e-20 95.9
MS.gene060901.t1 MTR_4g023980 29.240 171 94 3 47 217 31 174 6.59e-20 87.8
MS.gene060901.t1 MTR_8g024260 34.965 143 82 2 11 142 38 180 6.44e-19 90.5
MS.gene060901.t1 MTR_7g118260 36.496 137 76 3 2 130 5 138 7.34e-19 90.1
MS.gene060901.t1 MTR_8g093040 34.677 124 81 0 4 127 13 136 1.14e-18 86.7
MS.gene060901.t1 MTR_7g089010 62.712 59 22 0 190 248 90 148 4.95e-18 85.1
MS.gene060901.t1 MTR_1g067110 35.246 122 76 2 9 127 85 206 9.37e-18 87.0
MS.gene060901.t1 MTR_1g067110 35.246 122 76 2 9 127 85 206 9.45e-18 87.0
MS.gene060901.t1 MTR_3g037390 33.871 124 79 1 9 129 24 147 9.51e-18 86.7
MS.gene060901.t1 MTR_4g061360 35.246 122 76 1 9 127 89 210 3.18e-17 85.5
MS.gene060901.t1 MTR_4g108880 32.258 124 81 1 9 129 33 156 2.82e-16 82.4
MS.gene060901.t1 MTR_5g014040 52.239 67 32 0 189 255 309 375 3.57e-15 78.6
MS.gene060901.t1 MTR_5g014040 33.835 133 84 2 5 136 14 143 1.53e-11 67.0
MS.gene060901.t1 MTR_2g090675 44.318 88 48 1 188 275 158 244 1.53e-14 76.3
MS.gene060901.t1 MTR_4g098870 57.895 57 24 0 189 245 308 364 2.64e-14 75.9
MS.gene060901.t1 MTR_4g098870 57.895 57 24 0 189 245 308 364 2.93e-14 75.9
MS.gene060901.t1 MTR_4g098870 57.895 57 24 0 189 245 347 403 3.06e-14 75.9
MS.gene060901.t1 MTR_4g098870 57.895 57 24 0 189 245 328 384 3.18e-14 75.9
MS.gene060901.t1 MTR_4g098870 57.895 57 24 0 189 245 328 384 3.18e-14 75.9
MS.gene060901.t1 MTR_4g078810 53.333 60 28 0 188 247 155 214 4.29e-14 74.7
MS.gene060901.t1 MTR_5g014040 48.611 72 32 1 189 255 269 340 3.11e-13 72.4
MS.gene060901.t1 MTR_5g014040 48.611 72 32 1 189 255 309 380 3.39e-13 72.4
MS.gene060901.t1 MTR_5g014040 33.835 133 84 2 5 136 14 143 1.63e-11 67.0
MS.gene060901.t1 MTR_6g453220 51.765 85 38 2 207 288 379 463 3.46e-13 72.4
MS.gene060901.t1 MTR_4g106590 32.824 131 75 2 9 126 26 156 3.26e-12 66.2
MS.gene060901.t1 MTR_1g080330 55.932 59 25 1 186 243 170 228 4.34e-12 67.4
MS.gene060901.t1 MTR_7g490310 32.374 139 73 3 11 128 11 149 5.00e-12 66.2
MS.gene060901.t1 MTR_8g038620 31.159 138 75 3 11 128 11 148 6.12e-12 64.7
MS.gene060901.t1 MTR_1g080330 55.932 59 25 1 186 243 170 228 6.80e-12 67.8
MS.gene060901.t1 MTR_1g093080 42.466 73 41 1 177 248 197 269 8.01e-12 67.4
MS.gene060901.t1 MTR_7g115530 58.929 56 22 1 189 243 216 271 1.18e-11 66.2
MS.gene060901.t1 MTR_7g115530 58.929 56 22 1 189 243 216 271 1.86e-11 65.9
MS.gene060901.t1 MTR_7g115530 58.929 56 22 1 189 243 216 271 2.15e-11 65.9
MS.gene060901.t1 MTR_1g053835 53.333 60 27 1 186 244 253 312 3.73e-11 65.5
MS.gene060901.t1 MTR_7g115530 58.929 56 22 1 189 243 216 271 4.08e-11 65.5
MS.gene060901.t1 MTR_6g088950 26.590 173 119 3 7 178 5 170 4.68e-11 62.8
MS.gene060901.t1 MTR_5g017980 45.902 61 33 0 188 248 189 249 7.64e-11 63.9
MS.gene060901.t1 MTR_5g017980 45.902 61 33 0 188 248 190 250 8.05e-11 63.9
MS.gene060901.t1 MTR_4g086835 47.458 59 31 0 190 248 273 331 9.70e-11 64.3
MS.gene060901.t1 MTR_4g113140 41.892 74 42 1 183 255 227 300 9.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060901.t1 AT2G25180 59.677 310 116 5 3 309 11 314 1.50e-107 333
MS.gene060901.t1 AT4G31920 51.630 368 140 9 3 356 11 354 7.25e-103 320
MS.gene060901.t1 AT5G58080 47.912 407 146 14 3 387 12 374 8.60e-89 286
MS.gene060901.t1 AT3G16857 50.883 283 103 5 3 258 31 304 6.53e-84 274
MS.gene060901.t1 AT3G16857 50.177 283 105 4 3 258 31 304 2.10e-83 273
MS.gene060901.t1 AT1G67710 53.386 251 102 5 6 248 8 251 8.65e-73 241
MS.gene060901.t1 AT2G01760 48.134 268 131 3 1 261 3 269 1.15e-70 231
MS.gene060901.t1 AT3G16857 50.000 242 85 5 44 258 2 234 2.88e-66 226
MS.gene060901.t1 AT2G01760 43.289 298 133 4 1 263 3 299 1.24e-64 216
MS.gene060901.t1 AT5G49240 41.322 242 129 4 5 240 38 272 5.23e-51 176
MS.gene060901.t1 AT1G67710 51.295 193 79 5 64 248 1 186 4.83e-47 170
MS.gene060901.t1 AT3G62670 38.800 250 136 5 10 254 42 279 4.44e-44 161
MS.gene060901.t1 AT2G01760 45.366 205 104 3 64 261 1 204 3.16e-43 156
MS.gene060901.t1 AT1G49190 31.183 279 167 5 4 268 29 296 6.77e-37 141
MS.gene060901.t1 AT1G67710 46.821 173 77 5 84 248 12 177 2.80e-33 132
MS.gene060901.t1 AT5G07210 29.282 362 201 9 7 326 14 362 7.11e-33 133
MS.gene060901.t1 AT2G27070 30.000 300 150 7 7 260 14 299 6.56e-31 127
MS.gene060901.t1 AT5G07210 28.649 370 201 10 7 326 14 370 2.26e-30 125
MS.gene060901.t1 AT2G46790 39.024 123 70 2 9 127 37 158 1.70e-22 100
MS.gene060901.t1 AT2G46790 39.024 123 70 2 9 127 37 158 1.95e-22 100
MS.gene060901.t1 AT1G49190 38.400 125 77 0 4 128 29 153 5.41e-22 100
MS.gene060901.t1 AT5G59570 45.918 98 51 1 170 265 120 217 1.76e-20 92.4
MS.gene060901.t1 AT5G59570 45.918 98 51 1 170 265 120 217 1.76e-20 92.4
MS.gene060901.t1 AT5G24470 36.719 128 76 2 7 130 48 174 2.24e-20 95.1
MS.gene060901.t1 AT3G46640 47.778 90 45 1 178 265 129 218 4.02e-20 92.0
MS.gene060901.t1 AT3G46640 47.778 90 45 1 178 265 129 218 4.02e-20 92.0
MS.gene060901.t1 AT3G46640 47.778 90 45 1 178 265 129 218 4.97e-20 91.7
MS.gene060901.t1 AT2G40970 50.649 77 38 0 172 248 86 162 3.54e-19 87.4
MS.gene060901.t1 AT1G68210 26.894 264 162 6 9 243 13 274 3.57e-19 91.7
MS.gene060901.t1 AT3G10760 41.463 123 69 2 157 276 68 190 5.56e-19 88.6
MS.gene060901.t1 AT5G60100 37.008 127 76 2 5 127 59 185 7.72e-19 89.4
MS.gene060901.t1 AT5G60100 37.008 127 76 2 5 127 59 185 7.72e-19 89.4
MS.gene060901.t1 AT5G60100 37.008 127 76 2 5 127 59 185 7.72e-19 89.4
MS.gene060901.t1 AT5G60100 37.008 127 76 2 5 127 59 185 9.04e-19 89.7
MS.gene060901.t1 AT5G60100 37.008 127 76 2 5 127 59 185 9.04e-19 89.7
MS.gene060901.t1 AT5G60100 37.008 127 76 2 5 127 59 185 9.04e-19 89.7
MS.gene060901.t1 AT5G05090 54.286 70 32 0 179 248 69 138 1.59e-18 86.3
MS.gene060901.t1 AT5G60100 37.008 127 76 2 5 127 59 185 2.01e-18 89.0
MS.gene060901.t1 AT5G61380 33.871 124 79 1 9 129 19 142 7.25e-18 87.4
MS.gene060901.t1 AT5G02810 35.246 122 76 1 9 127 78 199 7.77e-18 87.4
MS.gene060901.t1 AT5G44190 56.923 65 28 0 183 247 139 203 1.01e-16 82.4
MS.gene060901.t1 AT5G44190 56.923 65 28 0 183 247 139 203 1.02e-16 82.0
MS.gene060901.t1 AT2G20570 40.367 109 57 2 165 273 130 230 6.90e-15 77.4
MS.gene060901.t1 AT2G20570 46.914 81 38 1 193 273 171 246 6.94e-14 74.3
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.41e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.41e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.41e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.41e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.41e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.41e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene060901.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene060901.t1 AT3G57040 28.395 162 94 2 11 150 11 172 8.79e-12 65.5
MS.gene060901.t1 AT3G57040 28.395 162 94 2 11 150 11 172 8.79e-12 65.5
MS.gene060901.t1 AT1G68670 37.624 101 59 2 174 270 198 298 1.66e-11 66.2
MS.gene060901.t1 AT1G25550 43.038 79 44 1 182 259 200 278 3.64e-11 65.1
MS.gene060901.t1 AT3G25790 34.375 128 72 4 195 321 200 316 5.34e-11 64.7
MS.gene060901.t1 AT3G56380 31.298 131 76 2 9 125 20 150 5.64e-11 61.6
MS.gene060901.t1 AT1G10470 31.579 133 79 2 11 131 36 168 7.59e-11 63.2
MS.gene060901.t1 AT1G10470 31.579 133 79 2 11 131 22 154 7.63e-11 63.2

Find 113 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAACATGTCTCAAGATTT+TGG 0.179210 1.2:-8487919 MS.gene060901:CDS
GGAAGGTAAGAGTTTGTTTC+TGG 0.198817 1.2:+8485302 None:intergenic
AGCTAATATGGCCGAAGATT+TGG 0.235811 1.2:-8485696 MS.gene060901:CDS
TTTAAGCTTCTTGAGCTTAT+TGG 0.242147 1.2:-8487144 MS.gene060901:CDS
ATTCCTTTCATCACCATCTT+TGG 0.253553 1.2:+8486982 None:intergenic
ACTCGACAGGTGATCATCTT+AGG 0.278334 1.2:-8485472 MS.gene060901:CDS
TGATGTCCCACCAGAGAAAT+TGG 0.298503 1.2:+8484751 None:intergenic
AATTTCCATCATGGTTGTTA+TGG 0.300876 1.2:+8485165 None:intergenic
TGTACCTCCTTCAATGTAAC+AGG 0.302320 1.2:+8486928 None:intergenic
CTTGCTGCTGTTAAACAATT+AGG 0.302670 1.2:-8486646 MS.gene060901:CDS
ATGAATGATCAATTTCCTAT+TGG 0.313965 1.2:-8487969 MS.gene060901:CDS
CCATTTCCACTATCAGAATT+AGG 0.318838 1.2:+8486844 None:intergenic
CCTAATTCTGATAGTGGAAA+TGG 0.330629 1.2:-8486844 MS.gene060901:CDS
GCTAATATGGCCGAAGATTT+GGG 0.348373 1.2:-8485695 MS.gene060901:CDS
CATGTGGTTGGTAGTTCAAT+AGG 0.353197 1.2:-8485131 MS.gene060901:CDS
GCATGGACAAAACCTTCTTT+TGG 0.354006 1.2:+8485281 None:intergenic
TGAAGGAGGTACAAATGATT+TGG 0.363320 1.2:-8486918 MS.gene060901:CDS
TCTAATAATGTGCCATTTCA+AGG 0.366783 1.2:-8485200 MS.gene060901:CDS
TTCACAACATGAATCATAGA+AGG 0.379234 1.2:+8485107 None:intergenic
TAGCCACATTCTCCCTTGTA+AGG 0.388290 1.2:+8486188 None:intergenic
GATATAACCCATTCTTGAAT+AGG 0.403697 1.2:+8485655 None:intergenic
AAAGAAGGTGCAATGACATT+TGG 0.412055 1.2:-8485346 MS.gene060901:CDS
CAATTATATGCCAATTTCTC+TGG 0.412361 1.2:-8484761 MS.gene060901:CDS
CTACTACTCATACCACTAGA+TGG 0.416526 1.2:+8485554 None:intergenic
AGAAGAAGCCTCGAGTTGTT+TGG 0.418038 1.2:-8486693 MS.gene060901:CDS
TACCATGGTATTGACACCTT+TGG 0.419217 1.2:+8487886 None:intergenic
TTATTATTATGAAACTGTCT+AGG 0.422621 1.2:+8485596 None:intergenic
TATGAACATTGCTGATTACT+AGG 0.423694 1.2:+8487184 None:intergenic
TTATTATCCCATCCTTGAAA+TGG 0.424148 1.2:+8485188 None:intergenic
AGCTTAAACCCATCCATGTC+TGG 0.428879 1.2:+8487159 None:intergenic
AACTCTTACCTTCCAAAAGA+AGG 0.429300 1.2:-8485293 MS.gene060901:CDS
GTTTCTGGTAATTGCAGCAT+AGG 0.430843 1.2:+8485317 None:intergenic
TGATAGATCCTATTCAAGAA+TGG 0.441988 1.2:-8485663 MS.gene060901:CDS
GATAGATCCTATTCAAGAAT+GGG 0.444292 1.2:-8485662 MS.gene060901:CDS
TTCAGATCCTTTCCATCTAG+TGG 0.445066 1.2:-8485566 MS.gene060901:CDS
GCAAGAACACGCATTCCAAT+AGG 0.451965 1.2:+8487954 None:intergenic
TCTTTGAACATCATTCAGAT+TGG 0.469109 1.2:+8485427 None:intergenic
ATGAATAATCAGATGAAGGC+TGG 0.470466 1.2:-8484993 MS.gene060901:CDS
ATGGGTTATATCAGTGGAGT+TGG 0.473556 1.2:-8485644 MS.gene060901:CDS
GGGAAACATTCGGCTGGGAC+AGG 0.477461 1.2:-8486823 MS.gene060901:CDS
GCTGAAACCTGTTACATTGA+AGG 0.477526 1.2:-8486935 MS.gene060901:CDS
CTAATTCTGATAGTGGAAAT+GGG 0.482228 1.2:-8486843 MS.gene060901:CDS
TGAGCTTATTGGACTTGAGA+TGG 0.484301 1.2:-8487133 MS.gene060901:CDS
TTTCTGGTAATTGCAGCATA+GGG 0.484334 1.2:+8485318 None:intergenic
AGAATCATTACCCAAATCTT+CGG 0.485778 1.2:+8485685 None:intergenic
TGTGAGTTCATGTTATATGT+AGG 0.486197 1.2:+8485245 None:intergenic
GAATGCTATTGAAGGAAACT+TGG 0.492011 1.2:-8485087 MS.gene060901:CDS
TGATTTGGCAACATGTAGTC+AGG 0.492304 1.2:-8486903 MS.gene060901:CDS
TGATCATCTTAGGTTTCAAT+CGG 0.494786 1.2:-8485462 MS.gene060901:CDS
CATGTTGTGAATGCTATTGA+AGG 0.494924 1.2:-8485095 MS.gene060901:CDS
GATGCGCCTAATTCTGATAG+TGG 0.498616 1.2:-8486850 MS.gene060901:CDS
TGAGAGTCTACAGAAGGAAA+TGG 0.499941 1.2:+8485401 None:intergenic
GCCAGTAGTGTTAATCTGCA+TGG 0.509822 1.2:-8485518 MS.gene060901:CDS
TAGTGGAAATGGGAAACATT+CGG 0.510168 1.2:-8486833 MS.gene060901:CDS
GGTTATATCAGTGGAGTTGG+TGG 0.511432 1.2:-8485641 MS.gene060901:CDS
GGAAATGGGAAACATTCGGC+TGG 0.517134 1.2:-8486829 MS.gene060901:CDS
TACCATCCTTCTCATGTGGT+TGG 0.521062 1.2:-8485143 MS.gene060901:CDS
GAAGAACGAAGATGATGATG+AGG 0.524981 1.2:-8486758 MS.gene060901:CDS
TTGCATAACTTACTTATGAC+AGG 0.526242 1.2:+8487105 None:intergenic
TCCATGCAGATTAACACTAC+TGG 0.528713 1.2:+8485517 None:intergenic
AAGGATGGTAATTTCCATCA+TGG 0.529123 1.2:+8485156 None:intergenic
AATAACCATAACAACCATGA+TGG 0.531658 1.2:-8485170 MS.gene060901:CDS
ATTCAGATTGGCGCGAGCTA+TGG 0.531857 1.2:+8485439 None:intergenic
TATTATTATGAAACTGTCTA+GGG 0.535599 1.2:+8485597 None:intergenic
TTCATATGCCAGACATGGAT+GGG 0.536690 1.2:-8487167 MS.gene060901:CDS
TATGATGAATAATCAGATGA+AGG 0.541034 1.2:-8484997 MS.gene060901:CDS
GAATGTGGCTAGCCATCTCC+AGG 0.545926 1.2:-8486176 MS.gene060901:intron
GTTCATATGCCAGACATGGA+TGG 0.546140 1.2:-8487168 MS.gene060901:CDS
ACCTCATGTGGTTTCAATGA+CGG 0.547065 1.2:+8485023 None:intergenic
TAATGTGCCATTTCAAGGAT+GGG 0.550140 1.2:-8485195 MS.gene060901:CDS
TTATATGCCAATTTCTCTGG+TGG 0.550617 1.2:-8484758 MS.gene060901:CDS
GAGTTGTTCAAATTATGTGC+AGG 0.552747 1.2:+8485491 None:intergenic
CATAATTTGAACAACTCGAC+AGG 0.552801 1.2:-8485485 MS.gene060901:CDS
TGGATGATGAAAACCTTACA+AGG 0.553288 1.2:-8486201 MS.gene060901:CDS
CAATGTTCATATGCCAGACA+TGG 0.556391 1.2:-8487172 MS.gene060901:CDS
ATAATGTGCCATTTCAAGGA+TGG 0.556574 1.2:-8485196 MS.gene060901:CDS
GGAAGAAGAAAACTAGCAAA+CGG 0.556828 1.2:-8486882 MS.gene060901:CDS
TTCATCATATATACCTCATG+TGG 0.558721 1.2:+8485011 None:intergenic
TGATGATGAGGATGAGAATG+AGG 0.567738 1.2:-8486746 MS.gene060901:CDS
CATGAGAGTCATGATCAAAC+CGG 0.571164 1.2:-8484928 MS.gene060901:intron
TATATGCCAATTTCTCTGGT+GGG 0.573019 1.2:-8484757 MS.gene060901:CDS
GAGTTCATGTTATATGTAGG+AGG 0.588472 1.2:+8485248 None:intergenic
ACTCATACCACTAGATGGAA+AGG 0.588967 1.2:+8485559 None:intergenic
GAACTACCAACCACATGAGA+AGG 0.589560 1.2:+8485137 None:intergenic
TGTTAGTGCACTTTGAGCAG+TGG 0.591132 1.2:+8487245 None:intergenic
AAACCTTACAAGGGAGAATG+TGG 0.595886 1.2:-8486191 MS.gene060901:CDS
TCAAGAATGGGTTATATCAG+TGG 0.601175 1.2:-8485650 MS.gene060901:CDS
TGCAGATTAACACTACTGGC+AGG 0.606997 1.2:+8485521 None:intergenic
GTGATGAAAGGAATTGATCA+TGG 0.607173 1.2:-8486973 MS.gene060901:CDS
CAATTATTGTGATCGTATCG+CGG 0.612466 1.2:-8485060 MS.gene060901:CDS
TGCGAATGATGATCCAAAGA+TGG 0.615837 1.2:-8486995 MS.gene060901:CDS
TGCATATTCTAATCTTGCCG+CGG 0.619450 1.2:+8484725 None:intergenic
GAAATGGGAAACATTCGGCT+GGG 0.620073 1.2:-8486828 MS.gene060901:CDS
TAGGAGGCATAGCAGCAGCA+TGG 0.623883 1.2:+8485264 None:intergenic
GAATGTTGAGAGTCTACAGA+AGG 0.629708 1.2:+8485395 None:intergenic
AAATTACCATCCTTCTCATG+TGG 0.631597 1.2:-8485147 MS.gene060901:CDS
GAAGCCTCGAGTTGTTTGGT+CGG 0.632069 1.2:-8486689 MS.gene060901:CDS
ACATGTTCTATCATCATCGA+CGG 0.636994 1.2:+8487932 None:intergenic
GATCCAAAGATGGTGATGAA+AGG 0.637771 1.2:-8486985 MS.gene060901:CDS
TCACAACATGAATCATAGAA+GGG 0.643072 1.2:+8485108 None:intergenic
TACCAACCACATGAGAAGGA+TGG 0.647791 1.2:+8485141 None:intergenic
CTCCAAAGGTGTCAATACCA+TGG 0.650196 1.2:-8487888 MS.gene060901:intron
AATCAAGCTCATTAGACATG+TGG 0.650925 1.2:+8484964 None:intergenic
TAACAGCAGCAAGAAACTTG+CGG 0.653136 1.2:+8486656 None:intergenic
TAATGAGCTTGATTCGCTCG+AGG 0.661321 1.2:-8484955 MS.gene060901:CDS
TCGTGACAATGATGATTCGA+CGG 0.663799 1.2:-8486719 MS.gene060901:CDS
ACATATAACATGAACTCACA+AGG 0.670292 1.2:-8485242 MS.gene060901:CDS
CTGGTGGGACATCAATGCCG+CGG 0.675642 1.2:-8484742 MS.gene060901:CDS
GGATGATGAAAACCTTACAA+GGG 0.676423 1.2:-8486200 MS.gene060901:CDS
GAAACCTGTTACATTGAAGG+AGG 0.684192 1.2:-8486932 MS.gene060901:CDS
TCAGCCGACCAAACAACTCG+AGG 0.687224 1.2:+8486685 None:intergenic
AACTGTCTAGGGTCATTCAG+TGG 0.690957 1.2:+8485608 None:intergenic
TCCGTCATTGAAACCACATG+AGG 0.701079 1.2:-8485024 MS.gene060901:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAGAAATCTAATCAT+TGG + chr1.2:8485356-8485375 None:intergenic 15.0%
!! AATATAAGATCACAAAATAT+TGG + chr1.2:8485257-8485276 None:intergenic 15.0%
!! ATTTAAGGAAAATACTTATA+TGG + chr1.2:8486841-8486860 None:intergenic 15.0%
!! TAAATTAAATGTAATCACAT+CGG - chr1.2:8486856-8486875 MS.gene060901:CDS 15.0%
!!! AGTTTATAAGCATTTTATTT+AGG - chr1.2:8486924-8486943 MS.gene060901:CDS 15.0%
!!! ATGTGATTACATTTAATTTA+AGG + chr1.2:8486856-8486875 None:intergenic 15.0%
!!! ATTTTTCATAATTTTTGTTG+TGG - chr1.2:8485418-8485437 MS.gene060901:CDS 15.0%
!!! TGTGATCTTATATTATTTTT+TGG - chr1.2:8485263-8485282 MS.gene060901:CDS 15.0%
!!! TTTTGTTCTTTTGATTTTTT+TGG - chr1.2:8484877-8484896 MS.gene060901:intron 15.0%
!! CATGCATAGAAAATTATTTA+GGG - chr1.2:8485650-8485669 MS.gene060901:CDS 20.0%
!! GATTCATAAAAATTCAACAT+TGG + chr1.2:8485091-8485110 None:intergenic 20.0%
!! TATAAGATAAGAAAAATACC+TGG + chr1.2:8486547-8486566 None:intergenic 20.0%
!! TATTATTATGAAACTGTCTA+GGG + chr1.2:8487108-8487127 None:intergenic 20.0%
!! TTATTATTATGAAACTGTCT+AGG + chr1.2:8487109-8487128 None:intergenic 20.0%
!!! AATCTCTAAAAGAATAAGAT+CGG + chr1.2:8485185-8485204 None:intergenic 20.0%
!!! AATTTTCTTTGATACTGTTT+AGG - chr1.2:8485127-8485146 MS.gene060901:CDS 20.0%
!!! ATTTCATAGATTTTATGATG+TGG - chr1.2:8485385-8485404 MS.gene060901:CDS 20.0%
!!! CATTGCATAAATTTTATTAC+CGG + chr1.2:8487796-8487815 None:intergenic 20.0%
! AATAAGATCGGTCAAAATAT+AGG + chr1.2:8485173-8485192 None:intergenic 25.0%
! ACTCGAATATCTTGATTAAA+TGG + chr1.2:8486174-8486193 None:intergenic 25.0%
! ATCCTTTACTTGAAAAAAGA+AGG - chr1.2:8487341-8487360 MS.gene060901:intron 25.0%
! ATGAATGATCAATTTCCTAT+TGG - chr1.2:8484733-8484752 MS.gene060901:CDS 25.0%
! CAAAAAAAACATACATACCA+TGG + chr1.2:8484834-8484853 None:intergenic 25.0%
! CAGAAAGCAATATAGAAAAA+TGG + chr1.2:8487896-8487915 None:intergenic 25.0%
! CCATGCATAGAAAATTATTT+AGG - chr1.2:8485649-8485668 MS.gene060901:CDS 25.0%
! CTCGAATATCTTGATTAAAT+GGG + chr1.2:8486173-8486192 None:intergenic 25.0%
! GTTTAATAATCTTCATAGCA+TGG + chr1.2:8486288-8486307 None:intergenic 25.0%
! TATAGAAAAACTTCATAGCA+TGG + chr1.2:8486410-8486429 None:intergenic 25.0%
! TATGATGAATAATCAGATGA+AGG - chr1.2:8487705-8487724 MS.gene060901:intron 25.0%
! TCTGAAAAAACAAGCTAATA+TGG - chr1.2:8486994-8487013 MS.gene060901:CDS 25.0%
! TTAAATGGGAACAAATAAAG+AGG + chr1.2:8486159-8486178 None:intergenic 25.0%
! TTTAATCAAGATATTCGAGT+AGG - chr1.2:8486174-8486193 MS.gene060901:intron 25.0%
! TTTAATTGCATCCAAATTGT+TGG - chr1.2:8485296-8485315 MS.gene060901:CDS 25.0%
!! AAAAAAGATTCTTGACTTGA+TGG - chr1.2:8486481-8486500 MS.gene060901:intron 25.0%
!! CCTAAATAATTTTCTATGCA+TGG + chr1.2:8485652-8485671 None:intergenic 25.0%
!!! ATCAAGTCAAGAATCTTTTT+TGG + chr1.2:8486482-8486501 None:intergenic 25.0%
AAAGCCATCTAGAAAAAGAA+AGG - chr1.2:8485920-8485939 MS.gene060901:intron 30.0%
AATAACCATAACAACCATGA+TGG - chr1.2:8487532-8487551 MS.gene060901:intron 30.0%
AATTTCCATCATGGTTGTTA+TGG + chr1.2:8487540-8487559 None:intergenic 30.0%
ACATATAACATGAACTCACA+AGG - chr1.2:8487460-8487479 MS.gene060901:intron 30.0%
ACGCTCACATATTTCAAAAA+AGG - chr1.2:8486715-8486734 MS.gene060901:CDS 30.0%
AGAATCATTACCCAAATCTT+CGG + chr1.2:8487020-8487039 None:intergenic 30.0%
ATAAGAAAAATACCTGGAGA+TGG + chr1.2:8486541-8486560 None:intergenic 30.0%
ATCTAGTGAATCCAACAATT+TGG + chr1.2:8485310-8485329 None:intergenic 30.0%
CAATTATATGCCAATTTCTC+TGG - chr1.2:8487941-8487960 MS.gene060901:CDS 30.0%
GATAGATCCTATTCAAGAAT+GGG - chr1.2:8487040-8487059 MS.gene060901:intron 30.0%
GATATAACCCATTCTTGAAT+AGG + chr1.2:8487050-8487069 None:intergenic 30.0%
GGATCATAAGTTAAATGCAT+CGG + chr1.2:8487875-8487894 None:intergenic 30.0%
TCACAACATGAATCATAGAA+GGG + chr1.2:8487597-8487616 None:intergenic 30.0%
TCATTCAAATTACATTGCCT+AGG + chr1.2:8484903-8484922 None:intergenic 30.0%
TCTTTGAACATCATTCAGAT+TGG + chr1.2:8487278-8487297 None:intergenic 30.0%
TGATAGATCCTATTCAAGAA+TGG - chr1.2:8487039-8487058 MS.gene060901:intron 30.0%
TGATCATCTTAGGTTTCAAT+CGG - chr1.2:8487240-8487259 MS.gene060901:CDS 30.0%
TGTGAGTTCATGTTATATGT+AGG + chr1.2:8487460-8487479 None:intergenic 30.0%
TTAAACGTTGATATTCGAGT+AGG - chr1.2:8486318-8486337 MS.gene060901:intron 30.0%
TTAGATGATCACAACCATTT+CGG - chr1.2:8486678-8486697 MS.gene060901:CDS 30.0%
TTATTATCCCATCCTTGAAA+TGG + chr1.2:8487517-8487536 None:intergenic 30.0%
TTCACAACATGAATCATAGA+AGG + chr1.2:8487598-8487617 None:intergenic 30.0%
TTCATCATATATACCTCATG+TGG + chr1.2:8487694-8487713 None:intergenic 30.0%
TTGCATAACTTACTTATGAC+AGG + chr1.2:8485600-8485619 None:intergenic 30.0%
TTTAAGCTTCTTGAGCTTAT+TGG - chr1.2:8485558-8485577 MS.gene060901:CDS 30.0%
TTTAGAGATTGCACATGATT+TGG - chr1.2:8485195-8485214 MS.gene060901:CDS 30.0%
! ATGATTTGAGCACATCATTT+TGG + chr1.2:8486813-8486832 None:intergenic 30.0%
! TAGAACATGTCTCAAGATTT+TGG - chr1.2:8484783-8484802 MS.gene060901:intron 30.0%
! TATGAACATTGCTGATTACT+AGG + chr1.2:8485521-8485540 None:intergenic 30.0%
! TTCTCCTTTCTTTTTCTAGA+TGG + chr1.2:8485927-8485946 None:intergenic 30.0%
!! CTAATTCTGATAGTGGAAAT+GGG - chr1.2:8485859-8485878 MS.gene060901:intron 30.0%
!! TCTAATAATGTGCCATTTCA+AGG - chr1.2:8487502-8487521 MS.gene060901:intron 30.0%
!!! CACCTTCTTTTTTCAAGTAA+AGG + chr1.2:8487346-8487365 None:intergenic 30.0%
!!! TCTTTTGATTTTTTTGGCCT+AGG - chr1.2:8484883-8484902 MS.gene060901:intron 30.0%
AAATTACCATCCTTCTCATG+TGG - chr1.2:8487555-8487574 MS.gene060901:intron 35.0%
AACCATTTCGGCATAAAATC+TGG - chr1.2:8486690-8486709 MS.gene060901:CDS 35.0%
AACTCTTACCTTCCAAAAGA+AGG - chr1.2:8487409-8487428 MS.gene060901:intron 35.0%
AAGGATGGTAATTTCCATCA+TGG + chr1.2:8487549-8487568 None:intergenic 35.0%
AATCAAGCTCATTAGACATG+TGG + chr1.2:8487741-8487760 None:intergenic 35.0%
ACATGTTCTATCATCATCGA+CGG + chr1.2:8484773-8484792 None:intergenic 35.0%
ACCATTTCGGCATAAAATCT+GGG - chr1.2:8486691-8486710 MS.gene060901:CDS 35.0%
ATGAATAATCAGATGAAGGC+TGG - chr1.2:8487709-8487728 MS.gene060901:intron 35.0%
ATTCCTTTCATCACCATCTT+TGG + chr1.2:8485723-8485742 None:intergenic 35.0%
CAATTATTGTGATCGTATCG+CGG - chr1.2:8487642-8487661 MS.gene060901:intron 35.0%
CATAATTTGAACAACTCGAC+AGG - chr1.2:8487217-8487236 MS.gene060901:CDS 35.0%
CATGTTGTGAATGCTATTGA+AGG - chr1.2:8487607-8487626 MS.gene060901:intron 35.0%
CCATTTCCACTATCAGAATT+AGG + chr1.2:8485861-8485880 None:intergenic 35.0%
CTTGCTGCTGTTAAACAATT+AGG - chr1.2:8486056-8486075 MS.gene060901:intron 35.0%
GAATGCTATTGAAGGAAACT+TGG - chr1.2:8487615-8487634 MS.gene060901:intron 35.0%
GAGTTCATGTTATATGTAGG+AGG + chr1.2:8487457-8487476 None:intergenic 35.0%
GAGTTGTTCAAATTATGTGC+AGG + chr1.2:8487214-8487233 None:intergenic 35.0%
GGAAGAAGAAAACTAGCAAA+CGG - chr1.2:8485820-8485839 MS.gene060901:intron 35.0%
GGATGATGAAAACCTTACAA+GGG - chr1.2:8486502-8486521 MS.gene060901:intron 35.0%
GTCATGTTTGGTATCTTTGT+CGG + chr1.2:8486599-8486618 None:intergenic 35.0%
GTGATGAAAGGAATTGATCA+TGG - chr1.2:8485729-8485748 MS.gene060901:intron 35.0%
TAGTGGAAATGGGAAACATT+CGG - chr1.2:8485869-8485888 MS.gene060901:intron 35.0%
TATATGCCAATTTCTCTGGT+GGG - chr1.2:8487945-8487964 MS.gene060901:CDS 35.0%
TGATGTGTTAGTGTCATGTT+TGG + chr1.2:8486611-8486630 None:intergenic 35.0%
TGGATGATGAAAACCTTACA+AGG - chr1.2:8486501-8486520 MS.gene060901:intron 35.0%
TTATATGCCAATTTCTCTGG+TGG - chr1.2:8487944-8487963 MS.gene060901:CDS 35.0%
! AAACGTTGAGATTAGTCCTA+GGG - chr1.2:8486241-8486260 MS.gene060901:intron 35.0%
! AAAGAAGGTGCAATGACATT+TGG - chr1.2:8487356-8487375 MS.gene060901:intron 35.0%
! TAAACGTTGAGATTAGTCCT+AGG - chr1.2:8486240-8486259 MS.gene060901:intron 35.0%
! TGAAGGAGGTACAAATGATT+TGG - chr1.2:8485784-8485803 MS.gene060901:intron 35.0%
! TTTCTGGTAATTGCAGCATA+GGG + chr1.2:8487387-8487406 None:intergenic 35.0%
!! ATAATGTGCCATTTCAAGGA+TGG - chr1.2:8487506-8487525 MS.gene060901:intron 35.0%
!! CCTAATTCTGATAGTGGAAA+TGG - chr1.2:8485858-8485877 MS.gene060901:intron 35.0%
!! TAATGTGCCATTTCAAGGAT+GGG - chr1.2:8487507-8487526 MS.gene060901:intron 35.0%
!! TCAAGAATGGGTTATATCAG+TGG - chr1.2:8487052-8487071 MS.gene060901:intron 35.0%
!!! AGTTGTTATTTTGCTTGCAG+AGG - chr1.2:8486451-8486470 MS.gene060901:intron 35.0%
AAACCTTACAAGGGAGAATG+TGG - chr1.2:8486511-8486530 MS.gene060901:intron 40.0%
ACCTCATGTGGTTTCAATGA+CGG + chr1.2:8487682-8487701 None:intergenic 40.0%
ACTCATACCACTAGATGGAA+AGG + chr1.2:8487146-8487165 None:intergenic 40.0%
AGCTAATATGGCCGAAGATT+TGG - chr1.2:8487006-8487025 MS.gene060901:intron 40.0%
CAATGTTCATATGCCAGACA+TGG - chr1.2:8485530-8485549 MS.gene060901:CDS 40.0%
CATGAGAGTCATGATCAAAC+CGG - chr1.2:8487774-8487793 MS.gene060901:intron 40.0%
CTACTACTCATACCACTAGA+TGG + chr1.2:8487151-8487170 None:intergenic 40.0%
GAAACCTGTTACATTGAAGG+AGG - chr1.2:8485770-8485789 MS.gene060901:intron 40.0%
GAATGTTGAGAGTCTACAGA+AGG + chr1.2:8487310-8487329 None:intergenic 40.0%
GCTAATATGGCCGAAGATTT+GGG - chr1.2:8487007-8487026 MS.gene060901:intron 40.0%
GCTGAAACCTGTTACATTGA+AGG - chr1.2:8485767-8485786 MS.gene060901:intron 40.0%
TAACAGCAGCAAGAAACTTG+CGG + chr1.2:8486049-8486068 None:intergenic 40.0%
TCCATGCAGATTAACACTAC+TGG + chr1.2:8487188-8487207 None:intergenic 40.0%
TCGTGACAATGATGATTCGA+CGG - chr1.2:8485983-8486002 MS.gene060901:intron 40.0%
TGAGAGTCTACAGAAGGAAA+TGG + chr1.2:8487304-8487323 None:intergenic 40.0%
TGAGCTTATTGGACTTGAGA+TGG - chr1.2:8485569-8485588 MS.gene060901:CDS 40.0%
TGCGAATGATGATCCAAAGA+TGG - chr1.2:8485707-8485726 MS.gene060901:CDS 40.0%
TGTACCTCCTTCAATGTAAC+AGG + chr1.2:8485777-8485796 None:intergenic 40.0%
TTCAGATCCTTTCCATCTAG+TGG - chr1.2:8487136-8487155 MS.gene060901:CDS 40.0%
TTCATATGCCAGACATGGAT+GGG - chr1.2:8485535-8485554 MS.gene060901:CDS 40.0%
! AACGTTGAGATTAGTCCTAG+GGG - chr1.2:8486242-8486261 MS.gene060901:intron 40.0%
! ATGGGTTATATCAGTGGAGT+TGG - chr1.2:8487058-8487077 MS.gene060901:intron 40.0%
! GAAGAACGAAGATGATGATG+AGG - chr1.2:8485944-8485963 MS.gene060901:intron 40.0%
! GATCCAAAGATGGTGATGAA+AGG - chr1.2:8485717-8485736 MS.gene060901:CDS 40.0%
! GCATGGACAAAACCTTCTTT+TGG + chr1.2:8487424-8487443 None:intergenic 40.0%
! GGAAGGTAAGAGTTTGTTTC+TGG + chr1.2:8487403-8487422 None:intergenic 40.0%
! GGACAAAACCTTCTTTTGGA+AGG + chr1.2:8487420-8487439 None:intergenic 40.0%
! TGATGATGAGGATGAGAATG+AGG - chr1.2:8485956-8485975 MS.gene060901:intron 40.0%
! TGATTTGGCAACATGTAGTC+AGG - chr1.2:8485799-8485818 MS.gene060901:intron 40.0%
! TTTTGCGCATTGAAGATCGA+GGG + chr1.2:8486100-8486119 None:intergenic 40.0%
! TTTTTGCGCATTGAAGATCG+AGG + chr1.2:8486101-8486120 None:intergenic 40.0%
!! CATGTGGTTGGTAGTTCAAT+AGG - chr1.2:8487571-8487590 MS.gene060901:intron 40.0%
!! GTTTCTGGTAATTGCAGCAT+AGG + chr1.2:8487388-8487407 None:intergenic 40.0%
!! TACCATGGTATTGACACCTT+TGG + chr1.2:8484819-8484838 None:intergenic 40.0%
!! TTTTGGAGAGACTTCTCCAA+AGG - chr1.2:8484800-8484819 MS.gene060901:intron 40.0%
ACTCGACAGGTGATCATCTT+AGG - chr1.2:8487230-8487249 MS.gene060901:CDS 45.0%
AGCTTAAACCCATCCATGTC+TGG + chr1.2:8485546-8485565 None:intergenic 45.0%
ATTAGTCCTAGGGGTGAATG+TGG - chr1.2:8486251-8486270 MS.gene060901:intron 45.0%
GAAATGGGAAACATTCGGCT+GGG - chr1.2:8485874-8485893 MS.gene060901:intron 45.0%
GAACTACCAACCACATGAGA+AGG + chr1.2:8487568-8487587 None:intergenic 45.0%
GATGCGCCTAATTCTGATAG+TGG - chr1.2:8485852-8485871 MS.gene060901:intron 45.0%
GCAAGAACACGCATTCCAAT+AGG + chr1.2:8484751-8484770 None:intergenic 45.0%
GCACGTACACTTCAGATTGA+AGG + chr1.2:8486899-8486918 None:intergenic 45.0%
GCCAGTAGTGTTAATCTGCA+TGG - chr1.2:8487184-8487203 MS.gene060901:CDS 45.0%
GGTTATATCAGTGGAGTTGG+TGG - chr1.2:8487061-8487080 MS.gene060901:intron 45.0%
GTTCATATGCCAGACATGGA+TGG - chr1.2:8485534-8485553 MS.gene060901:CDS 45.0%
TACCAACCACATGAGAAGGA+TGG + chr1.2:8487564-8487583 None:intergenic 45.0%
TACCATCCTTCTCATGTGGT+TGG - chr1.2:8487559-8487578 MS.gene060901:intron 45.0%
TAGCCACATTCTCCCTTGTA+AGG + chr1.2:8486517-8486536 None:intergenic 45.0%
TCCGTCATTGAAACCACATG+AGG - chr1.2:8487678-8487697 MS.gene060901:intron 45.0%
TGATGTCCCACCAGAGAAAT+TGG + chr1.2:8487954-8487973 None:intergenic 45.0%
TGCAGATTAACACTACTGGC+AGG + chr1.2:8487184-8487203 None:intergenic 45.0%
TGTTAGTGCACTTTGAGCAG+TGG + chr1.2:8485460-8485479 None:intergenic 45.0%
! AACTGTCTAGGGTCATTCAG+TGG + chr1.2:8487097-8487116 None:intergenic 45.0%
! AGAAGAAGCCTCGAGTTGTT+TGG - chr1.2:8486009-8486028 MS.gene060901:intron 45.0%
! GCCCAGATTTTATGCCGAAA+TGG + chr1.2:8486695-8486714 None:intergenic 45.0%
! TAATGAGCTTGATTCGCTCG+AGG - chr1.2:8487747-8487766 MS.gene060901:intron 45.0%
!! CTCCAAAGGTGTCAATACCA+TGG - chr1.2:8484814-8484833 MS.gene060901:intron 45.0%
!!! TTTTTTGAAATATTTAAAAT+AGG - chr1.2:8484847-8484866 MS.gene060901:intron 5.0%
ACATAGCCACATTCACCCCT+AGG + chr1.2:8486260-8486279 None:intergenic 50.0%
ATTCAGATTGGCGCGAGCTA+TGG + chr1.2:8487266-8487285 None:intergenic 50.0%
GGAAATGGGAAACATTCGGC+TGG - chr1.2:8485873-8485892 MS.gene060901:intron 50.0%
! GAAGCCTCGAGTTGTTTGGT+CGG - chr1.2:8486013-8486032 MS.gene060901:intron 50.0%
TCAGCCGACCAAACAACTCG+AGG + chr1.2:8486020-8486039 None:intergenic 55.0%
! GAATGTGGCTAGCCATCTCC+AGG - chr1.2:8486526-8486545 MS.gene060901:intron 55.0%
! TAGGAGGCATAGCAGCAGCA+TGG + chr1.2:8487441-8487460 None:intergenic 55.0%
CTGGTGGGACATCAATGCCG+CGG - chr1.2:8487960-8487979 MS.gene060901:CDS 60.0%
GGGAAACATTCGGCTGGGAC+AGG - chr1.2:8485879-8485898 MS.gene060901:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 8484733 8487991 8484733 ID=MS.gene060901
chr1.2 mRNA 8484733 8487991 8484733 ID=MS.gene060901.t1;Parent=MS.gene060901
chr1.2 exon 8487889 8487991 8487889 ID=MS.gene060901.t1.exon1;Parent=MS.gene060901.t1
chr1.2 CDS 8487889 8487991 8487889 ID=cds.MS.gene060901.t1;Parent=MS.gene060901.t1
chr1.2 exon 8487118 8487270 8487118 ID=MS.gene060901.t1.exon2;Parent=MS.gene060901.t1
chr1.2 CDS 8487118 8487270 8487118 ID=cds.MS.gene060901.t1;Parent=MS.gene060901.t1
chr1.2 exon 8486638 8487024 8486638 ID=MS.gene060901.t1.exon3;Parent=MS.gene060901.t1
chr1.2 CDS 8486638 8487024 8486638 ID=cds.MS.gene060901.t1;Parent=MS.gene060901.t1
chr1.2 exon 8486177 8486253 8486177 ID=MS.gene060901.t1.exon4;Parent=MS.gene060901.t1
chr1.2 CDS 8486177 8486253 8486177 ID=cds.MS.gene060901.t1;Parent=MS.gene060901.t1
chr1.2 exon 8484929 8485744 8484929 ID=MS.gene060901.t1.exon5;Parent=MS.gene060901.t1
chr1.2 CDS 8484929 8485744 8484929 ID=cds.MS.gene060901.t1;Parent=MS.gene060901.t1
chr1.2 exon 8484733 8484786 8484733 ID=MS.gene060901.t1.exon6;Parent=MS.gene060901.t1
chr1.2 CDS 8484733 8484786 8484733 ID=cds.MS.gene060901.t1;Parent=MS.gene060901.t1
Gene Sequence

>MS.gene060901

ATGAATGATCAATTTCCTATTGGAATGCGTGTTCTTGCCGTCGATGATGATAGAACATGTCTCAAGATTTTGGAGAGACTTCTCCAAAGGTGTCAATACCATGGTATGTATGTTTTTTTTGAAATATTTAAAATAGGTTTTTGTTTTTGTTCTTTTGATTTTTTTGGCCTAGGCAATGTAATTTGAATGATAACATTAACAGTTACTTTTTTTGTAAACTTGAATTTGTCAAATTGATTGAGTTTTTTTTTTGTTTATTTTGTTTTTTGTTGTGACAAATTATCTATTTTGACAAATATGTGCATTTATGTATGTGTTAGATTATAGATTATAGATTATCATCAGTGAAGTTGAGCCAATGTTGAATTTTTATGAATCAAATAGATTAGTTTTAAATTTTCTTTGATACTGTTTAGGCTCAACTAAGTTATTTTTGACCTATATTTTGACCGATCTTATTCTTTTAGAGATTGCACATGATTTGGTTTTTAAAGTTCTAAATTTTTAAAAAATTCTTGTGTCCAATATTTTGTGATCTTATATTATTTTTTGGATTTCAAAAATTTAATTGCATCCAAATTGTTGGATTCACTAGATGCAGATTGTCATGCAATTCTTGTCCAATGATTAGATTTCTTATTTTTTAATTAACATTTCATAGATTTTATGATGTGGTTGTATCTGAATTTTTCATAATTTTTGTTGTGGTTATTTGTTGCAGTAACCACTGCTCAAAGTGCACTAACAGCACTGAACTTGTTGAGAGAAAATAAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGGTTTAAGCTTCTTGAGCTTATTGGACTTGAGATGGATTTACCTGTCATAAGTAAGTTATGCAATTCTTCAATCTTATGTTATTGTTATTGATCCATGCATAGAAAATTATTTAGGGTTTTGATAAAAAACTGTTTGATTTCAGTGTTTTCTGCGAATGATGATCCAAAGATGGTGATGAAAGGAATTGATCATGGTGCTTGTGATTATCTGCTGAAACCTGTTACATTGAAGGAGGTACAAATGATTTGGCAACATGTAGTCAGGAAGAAGAAAACTAGCAAACGGAGCAATCTTGATGCGCCTAATTCTGATAGTGGAAATGGGAAACATTCGGCTGGGACAGGCAATTCTGATCAAATTGAAAAGCCATCTAGAAAAAGAAAGGAGAAGAACGAAGATGATGATGAGGATGAGAATGAGGATGATCGTGACAATGATGATTCGACGGCACAGAAGAAGCCTCGAGTTGTTTGGTCGGCTGACTTACACCGCAAGTTTCTTGCTGCTGTTAAACAATTAGGCTTTGAAAGTATGTTGTTCCCTCGATCTTCAATGCGCAAAAACAGTTGTCATCATAACTTTTATCAATTGCTATATTCCTCTTTATTTGTTCCCATTTAATCAAGATATTCGAGTAGGTTTGTTCCCATTTAATCAAGATATTCGAGTAGGTTATAGAAATTAAACGTTGAGATTAGTCCTAGGGGTGAATGTGGCTATGTTTTAGCCATGCTATGAAGATTATTAAACGTTGAGATTATTAAACGTTGATATTCGAGTAGGTTATAGAAATTAAACGTTGAAATTAAACGTCAAGATTATTAATCAAGATCATTACTTATGTTTTAGCCATGCTATGAAGTTTTTCTATACATAACTGTGTTTCTCATTATAGTTGTTATTTTGCTTGCAGAGGCTGTGCCAAAAAAGATTCTTGACTTGATGGATGATGAAAACCTTACAAGGGAGAATGTGGCTAGCCATCTCCAGGTATTTTTCTTATCTTATATTTAGCGTTAGAAACTATGAATCACAACACCGACAAAGATACCAAACATGACACTAACACATCAACACTGCTAATAATTTAAAAACTTAAAATAATTAAATTAAGAGAGTCTTAGATGATCACAACCATTTCGGCATAAAATCTGGGCACGCTCACATATTTCAAAAAAGGTAGAGAGAAAAAATAATTAAATAATGTTTATCTTGATAATAATTAAATGATATGTATTTTGATGCGTGTGCGCCAAAATGATGTGCTCAAATCATTGTGACCATATAAGTATTTTCCTTAAATTAAATGTAATCACATCGGCATCAGAAACTAGACAACCTTCAATCTGAAGTGTACGTGCTACGTAGTTTATAAGCATTTTATTTAGGAAAACTAACTACTTTTATTTGAAATTTCTGCAGAAATACAGACTCTATCTGAAAAAACAAGCTAATATGGCCGAAGATTTGGGTAATGATTCTGATAGATCCTATTCAAGAATGGGTTATATCAGTGGAGTTGGTGGACATGTGCAGCCACTGAATGACCCTAGACAGTTTCATAATAATAACAGTGCTTTCAGATCCTTTCCATCTAGTGGTATGAGTAGTAGATTGTACACTCCTGCCAGTAGTGTTAATCTGCATGGATTTCCTGCACATAATTTGAACAACTCGACAGGTGATCATCTTAGGTTTCAATCGGCCATAGCTCGCGCCAATCTGAATGATGTTCAAAGAATGCCATTTCCTTCTGTAGACTCTCAACATTCACAGTTTTCTCATCCTTTACTTGAAAAAAGAAGGTGCAATGACATTTGGTCAAGCCCTATGCTGCAATTACCAGAAACAAACTCTTACCTTCCAAAAGAAGGTTTTGTCCATGCTGCTGCTATGCCTCCTACATATAACATGAACTCACAAGGTATTATTTTTAACAGCAGTTCTAATAATGTGCCATTTCAAGGATGGGATAATAACCATAACAACCATGATGGAAATTACCATCCTTCTCATGTGGTTGGTAGTTCAATAGGCCCTTCTATGATTCATGTTGTGAATGCTATTGAAGGAAACTTGGACAACAATTATTGTGATCGTATCGCGGAGTTACATGAAGTTCCGTCATTGAAACCACATGAGGTATATATGATGAATAATCAGATGAAGGCTGGAAATAGCCACATGTCTAATGAGCTTGATTCGCTCGAGGACGTCATGAGAGTCATGATCAAACCGGTAATAAAATTTATGCAATGCAATGAAGTTCTTATCTGAGTTTTTTTGTTTGATTGTTGATTTGAACATAAAAGTTCCGATGCATTTAACTTATGATCCATTTTTCTATATTGCTTTCTGATCATTAATTCTTTTGATGCAGAAACAATTATATGCCAATTTCTCTGGTGGGACATCAATGCCGCGGCAAGATTAG
Protein sequence

>MS.gene060901.t1

MNDQFPIGMRVLAVDDDRTCLKILERLLQRCQYHVTTAQSALTALNLLRENKSNFDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVMKGIDHGACDYLLKPVTLKEVQMIWQHVVRKKKTSKRSNLDAPNSDSGNGKHSAGTGNSDQIEKPSRKRKEKNEDDDEDENEDDRDNDDSTAQKKPRVVWSADLHRKFLAAVKQLGFEKAVPKKILDLMDDENLTRENVASHLQKYRLYLKKQANMAEDLGNDSDRSYSRMGYISGVGGHVQPLNDPRQFHNNNSAFRSFPSSGMSSRLYTPASSVNLHGFPAHNLNNSTGDHLRFQSAIARANLNDVQRMPFPSVDSQHSQFSHPLLEKRRCNDIWSSPMLQLPETNSYLPKEGFVHAAAMPPTYNMNSQGIIFNSSSNNVPFQGWDNNHNNHDGNYHPSHVVGSSIGPSMIHVVNAIEGNLDNNYCDRIAELHEVPSLKPHEVYMMNNQMKAGNSHMSNELDSLEDVMRVMIKPKQLYANFSGGTSMPRQD