Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061052.t1 | RHN78155.1 | 80.7 | 171 | 33 | 0 | 4 | 174 | 5 | 175 | 4.10E-76 | 294.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061052.t1 | Q8L3W1 | 51.1 | 133 | 60 | 3 | 1 | 130 | 1 | 131 | 1.4e-29 | 131.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061052.t1 | A0A396JPM6 | 80.7 | 171 | 33 | 0 | 4 | 174 | 5 | 175 | 2.9e-76 | 294.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene061052.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061052.t1 | MTR_1g034210 | 79.781 | 183 | 37 | 0 | 4 | 186 | 5 | 187 | 3.12e-109 | 315 |
| MS.gene061052.t1 | MTR_1g034210 | 79.781 | 183 | 37 | 0 | 4 | 186 | 5 | 187 | 2.81e-108 | 314 |
| MS.gene061052.t1 | MTR_1g034240 | 68.824 | 170 | 50 | 2 | 2 | 168 | 3 | 172 | 7.32e-78 | 239 |
| MS.gene061052.t1 | MTR_4g068320 | 49.398 | 166 | 81 | 2 | 1 | 163 | 1 | 166 | 5.09e-49 | 164 |
| MS.gene061052.t1 | MTR_5g070440 | 49.020 | 102 | 50 | 1 | 3 | 102 | 18 | 119 | 8.12e-27 | 103 |
| MS.gene061052.t1 | MTR_3g005480 | 47.475 | 99 | 52 | 0 | 3 | 101 | 18 | 116 | 2.06e-26 | 101 |
| MS.gene061052.t1 | MTR_3g005490 | 46.465 | 99 | 53 | 0 | 3 | 101 | 18 | 116 | 7.58e-25 | 97.8 |
| MS.gene061052.t1 | MTR_3g005460 | 46.392 | 97 | 51 | 1 | 6 | 101 | 262 | 358 | 7.33e-22 | 92.4 |
| MS.gene061052.t1 | MTR_3g005460 | 45.133 | 113 | 59 | 2 | 3 | 112 | 22 | 134 | 3.57e-21 | 90.5 |
| MS.gene061052.t1 | MTR_3g005495 | 42.424 | 99 | 57 | 0 | 3 | 101 | 240 | 338 | 1.15e-21 | 91.7 |
| MS.gene061052.t1 | MTR_3g005495 | 47.872 | 94 | 46 | 3 | 21 | 111 | 28 | 121 | 6.80e-17 | 77.8 |
| MS.gene061052.t1 | MTR_3g005420 | 43.434 | 99 | 56 | 0 | 3 | 101 | 286 | 384 | 1.26e-20 | 89.0 |
| MS.gene061052.t1 | MTR_3g005420 | 37.815 | 119 | 66 | 2 | 3 | 113 | 37 | 155 | 1.43e-19 | 85.9 |
| MS.gene061052.t1 | MTR_3g061320 | 46.465 | 99 | 49 | 2 | 6 | 102 | 12 | 108 | 4.06e-20 | 85.5 |
| MS.gene061052.t1 | MTR_5g044670 | 38.136 | 118 | 69 | 2 | 3 | 116 | 13 | 130 | 5.44e-20 | 85.9 |
| MS.gene061052.t1 | MTR_3g005420 | 37.815 | 119 | 66 | 2 | 3 | 113 | 18 | 136 | 1.18e-19 | 85.9 |
| MS.gene061052.t1 | MTR_3g005420 | 43.243 | 74 | 42 | 0 | 3 | 76 | 267 | 340 | 1.56e-14 | 71.2 |
| MS.gene061052.t1 | MTR_3g061340 | 44.000 | 100 | 51 | 3 | 6 | 102 | 12 | 109 | 1.87e-19 | 83.6 |
| MS.gene061052.t1 | MTR_3g061290 | 45.455 | 99 | 50 | 2 | 6 | 102 | 12 | 108 | 2.05e-19 | 82.0 |
| MS.gene061052.t1 | MTR_3g061310 | 43.137 | 102 | 54 | 2 | 6 | 105 | 12 | 111 | 3.49e-19 | 82.8 |
| MS.gene061052.t1 | MTR_3g005440 | 43.434 | 99 | 56 | 0 | 3 | 101 | 239 | 337 | 3.52e-19 | 84.3 |
| MS.gene061052.t1 | MTR_3g005440 | 47.059 | 85 | 43 | 1 | 20 | 102 | 34 | 118 | 1.46e-17 | 79.7 |
| MS.gene061052.t1 | MTR_3g061350 | 44.118 | 102 | 53 | 2 | 6 | 105 | 12 | 111 | 5.82e-19 | 82.4 |
| MS.gene061052.t1 | MTR_7g050560 | 41.414 | 99 | 56 | 1 | 6 | 102 | 13 | 111 | 1.87e-18 | 81.3 |
| MS.gene061052.t1 | MTR_7g050710 | 44.444 | 99 | 53 | 1 | 6 | 102 | 13 | 111 | 3.94e-18 | 80.5 |
| MS.gene061052.t1 | MTR_8g103940 | 29.775 | 178 | 107 | 4 | 6 | 173 | 39 | 208 | 6.01e-18 | 80.9 |
| MS.gene061052.t1 | MTR_3g061330 | 42.574 | 101 | 54 | 2 | 6 | 104 | 12 | 110 | 6.53e-18 | 79.0 |
| MS.gene061052.t1 | MTR_7g050580 | 39.583 | 96 | 58 | 0 | 6 | 101 | 13 | 108 | 1.89e-17 | 78.6 |
| MS.gene061052.t1 | MTR_7g050720 | 39.823 | 113 | 63 | 2 | 1 | 111 | 5 | 114 | 3.31e-17 | 78.2 |
| MS.gene061052.t1 | MTR_3g098790 | 41.414 | 99 | 56 | 1 | 6 | 102 | 13 | 111 | 3.90e-16 | 75.1 |
| MS.gene061052.t1 | MTR_1g035460 | 32.231 | 121 | 71 | 2 | 22 | 139 | 2 | 114 | 5.29e-16 | 75.1 |
| MS.gene061052.t1 | MTR_3g061370 | 32.716 | 162 | 85 | 4 | 3 | 149 | 6 | 158 | 7.56e-16 | 73.9 |
| MS.gene061052.t1 | MTR_3g061220 | 40.594 | 101 | 43 | 3 | 6 | 104 | 12 | 97 | 3.37e-15 | 68.9 |
| MS.gene061052.t1 | MTR_7g050590 | 39.759 | 83 | 48 | 1 | 22 | 102 | 2 | 84 | 2.00e-14 | 70.1 |
| MS.gene061052.t1 | MTR_1g021270 | 32.759 | 116 | 69 | 2 | 4 | 119 | 14 | 120 | 4.64e-14 | 69.7 |
| MS.gene061052.t1 | MTR_7g050640 | 36.559 | 93 | 59 | 0 | 6 | 98 | 13 | 105 | 9.28e-14 | 65.1 |
| MS.gene061052.t1 | MTR_1g021400 | 38.889 | 90 | 55 | 0 | 6 | 95 | 30 | 119 | 1.80e-13 | 67.8 |
| MS.gene061052.t1 | MTR_1g108780 | 35.246 | 122 | 60 | 4 | 21 | 139 | 12 | 117 | 1.56e-12 | 65.5 |
| MS.gene061052.t1 | MTR_1g021350 | 37.931 | 87 | 54 | 0 | 9 | 95 | 24 | 110 | 2.47e-12 | 64.7 |
| MS.gene061052.t1 | MTR_1g021440 | 38.372 | 86 | 53 | 0 | 10 | 95 | 26 | 111 | 5.67e-12 | 63.2 |
| MS.gene061052.t1 | MTR_1g021320 | 36.047 | 86 | 54 | 1 | 10 | 95 | 187 | 271 | 6.16e-12 | 63.9 |
| MS.gene061052.t1 | MTR_1g021320 | 36.264 | 91 | 58 | 0 | 6 | 96 | 25 | 115 | 2.62e-11 | 62.0 |
| MS.gene061052.t1 | MTR_1g021440 | 38.372 | 86 | 53 | 0 | 10 | 95 | 26 | 111 | 6.68e-12 | 62.8 |
| MS.gene061052.t1 | MTR_1g021360 | 41.026 | 78 | 46 | 0 | 18 | 95 | 194 | 271 | 7.26e-12 | 63.5 |
| MS.gene061052.t1 | MTR_1g021360 | 37.778 | 90 | 55 | 1 | 6 | 95 | 26 | 114 | 1.90e-11 | 62.4 |
| MS.gene061052.t1 | MTR_1g021440 | 38.372 | 86 | 53 | 0 | 10 | 95 | 26 | 111 | 9.83e-12 | 62.8 |
| MS.gene061052.t1 | MTR_1g021440 | 38.372 | 86 | 53 | 0 | 10 | 95 | 26 | 111 | 1.25e-11 | 62.8 |
| MS.gene061052.t1 | MTR_6g043890 | 31.818 | 110 | 74 | 1 | 6 | 114 | 15 | 124 | 1.26e-11 | 62.4 |
| MS.gene061052.t1 | MTR_1g021410 | 37.931 | 87 | 54 | 0 | 9 | 95 | 25 | 111 | 4.21e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061052.t1 | AT3G18990 | 51.128 | 133 | 60 | 3 | 1 | 130 | 1 | 131 | 2.14e-37 | 132 |
| MS.gene061052.t1 | AT3G18990 | 51.128 | 133 | 60 | 3 | 1 | 130 | 1 | 131 | 5.32e-37 | 132 |
| MS.gene061052.t1 | AT4G01580 | 40.206 | 97 | 58 | 0 | 2 | 98 | 26 | 122 | 7.50e-21 | 85.5 |
| MS.gene061052.t1 | AT3G18960 | 39.175 | 97 | 59 | 0 | 2 | 98 | 26 | 122 | 8.30e-20 | 83.2 |
| MS.gene061052.t1 | AT3G18960 | 40.426 | 94 | 56 | 0 | 2 | 95 | 26 | 119 | 9.71e-20 | 82.8 |
| MS.gene061052.t1 | AT3G18960 | 36.905 | 84 | 53 | 0 | 15 | 98 | 2 | 85 | 4.26e-13 | 64.7 |
| MS.gene061052.t1 | AT1G49475 | 34.906 | 106 | 63 | 3 | 2 | 102 | 27 | 131 | 1.06e-12 | 63.9 |
Find 40 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCGACTCCTTTGATTTCC+TGG | 0.264885 | 1.4:-18741931 | MS.gene061052:CDS |
| TGTTTCCTCACAAAATTATC+TGG | 0.294456 | 1.4:+18742245 | None:intergenic |
| GTCGCAACTGTCACTGTTCC+TGG | 0.328533 | 1.4:-18742203 | MS.gene061052:CDS |
| CTGTTCCTGGCGGCACAGTC+TGG | 0.341469 | 1.4:-18742190 | MS.gene061052:CDS |
| AAATAGGATTACAGATTTGA+TGG | 0.357812 | 1.4:+18741970 | None:intergenic |
| TGCTTAGATTGAAGGGTTGT+TGG | 0.371314 | 1.4:+18743959 | None:intergenic |
| CTGGCGTCTAGGATTGAAAA+AGG | 0.378642 | 1.4:-18742171 | MS.gene061052:CDS |
| AACCCTTCAATCTAAGCAAT+TGG | 0.424880 | 1.4:-18743954 | MS.gene061052:intron |
| CCAACAAAGACAAGAAAATC+AGG | 0.425167 | 1.4:-18741820 | MS.gene061052:CDS |
| TTACCAATTGCTTAGATTGA+AGG | 0.430305 | 1.4:+18743951 | None:intergenic |
| CAATGATTCTGCTGGATGTA+TGG | 0.440244 | 1.4:-18741871 | MS.gene061052:CDS |
| AGTTGCGACATTCGAAAGTT+GGG | 0.460986 | 1.4:+18742217 | None:intergenic |
| AATGCTCCAGTAGGGTTTGA+AGG | 0.463928 | 1.4:+18741900 | None:intergenic |
| ACAATGAGGAGCCGGGTTGA+AGG | 0.464834 | 1.4:-18741999 | MS.gene061052:CDS |
| CAGTTGCGACATTCGAAAGT+TGG | 0.480949 | 1.4:+18742216 | None:intergenic |
| GGTTTGAAGGTGCTGAATCC+AGG | 0.493431 | 1.4:+18741913 | None:intergenic |
| TTCAAGAAAGAAGTTGAAGA+TGG | 0.497131 | 1.4:-18741784 | MS.gene061052:CDS |
| TGCCTTGCAATGCTCCAGTA+GGG | 0.497562 | 1.4:+18741892 | None:intergenic |
| ATTATTCAACAATGAGGAGC+CGG | 0.501754 | 1.4:-18742007 | MS.gene061052:CDS |
| GGCGGCACAGTCTGGCGTCT+AGG | 0.507179 | 1.4:-18742182 | MS.gene061052:CDS |
| CAATGAGGAGCCGGGTTGAA+GGG | 0.513116 | 1.4:-18741998 | MS.gene061052:CDS |
| TACCAATTGCTTAGATTGAA+GGG | 0.513266 | 1.4:+18743952 | None:intergenic |
| AGAATGAGCTTGTTAAAAGA+AGG | 0.513925 | 1.4:+18743983 | None:intergenic |
| TCAGCACCTTCAAACCCTAC+TGG | 0.515463 | 1.4:-18741906 | MS.gene061052:CDS |
| TTGCCTTGCAATGCTCCAGT+AGG | 0.535055 | 1.4:+18741891 | None:intergenic |
| TTGCAAGGCAATGATTCTGC+TGG | 0.552091 | 1.4:-18741879 | MS.gene061052:CDS |
| TGTTGGATATGATTCTCCGC+TGG | 0.554776 | 1.4:+18741837 | None:intergenic |
| AGACGCCAGACTGTGCCGCC+AGG | 0.556863 | 1.4:+18742185 | None:intergenic |
| GAACGCTACTCAATTGACAT+TGG | 0.561310 | 1.4:-18742104 | MS.gene061052:CDS |
| TTATTCAACAATGAGGAGCC+GGG | 0.570623 | 1.4:-18742006 | MS.gene061052:CDS |
| AACCCTACTGGAGCATTGCA+AGG | 0.577669 | 1.4:-18741894 | MS.gene061052:CDS |
| GGATTACAGATTTGATGGAA+AGG | 0.593449 | 1.4:+18741975 | None:intergenic |
| AATAGTCTATCTCAGCAGTA+CGG | 0.595590 | 1.4:+18742027 | None:intergenic |
| GATGGAAAGGCCCTTCAACC+CGG | 0.599017 | 1.4:+18741988 | None:intergenic |
| TGCTGAATCCAGGAAATCAA+AGG | 0.601479 | 1.4:+18741923 | None:intergenic |
| TAGACTATTATTCAACAATG+AGG | 0.648491 | 1.4:-18742013 | MS.gene061052:CDS |
| TTACTAGTATTCACATACGA+AGG | 0.667290 | 1.4:-18742077 | MS.gene061052:CDS |
| AGCTTGTTAAAAGAAGGACT+AGG | 0.695965 | 1.4:+18743989 | None:intergenic |
| TATGGATCAACTGATACCAG+CGG | 0.714314 | 1.4:-18741853 | MS.gene061052:CDS |
| GCAACTGTCACTGTTCCTGG+CGG | 0.742674 | 1.4:-18742200 | MS.gene061052:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATAAATAAATTGGTT+TGG | + | chr1.4:18743259-18743278 | None:intergenic | 10.0% |
| !! | TCTCTATTAAATAAATAAAT+TGG | + | chr1.4:18743264-18743283 | None:intergenic | 10.0% |
| !! | AAAAAAAATAAACATAAGCT+TGG | + | chr1.4:18743389-18743408 | None:intergenic | 15.0% |
| !! | AAAATTCAATCTTTATGAAA+AGG | + | chr1.4:18741958-18741977 | None:intergenic | 15.0% |
| !! | AAATTCAATCTTTATGAAAA+GGG | + | chr1.4:18741957-18741976 | None:intergenic | 15.0% |
| !!! | ATCAAAATAGTCAAATTTTA+GGG | + | chr1.4:18742211-18742230 | None:intergenic | 15.0% |
| !!! | ATTGAAGTTTATTTTTTGTT+TGG | - | chr1.4:18742285-18742304 | MS.gene061052:intron | 15.0% |
| !!! | GATTTTTTTTATCTTATGAT+GGG | - | chr1.4:18741901-18741920 | MS.gene061052:CDS | 15.0% |
| !! | AATTCAATCTTTATGAAAAG+GGG | + | chr1.4:18741956-18741975 | None:intergenic | 20.0% |
| !! | ATTAACTACCATTATGAATA+TGG | + | chr1.4:18742655-18742674 | None:intergenic | 20.0% |
| !! | TTAATATATGACACATTGAA+CGG | - | chr1.4:18742494-18742513 | MS.gene061052:intron | 20.0% |
| !!! | AATATTATTTTCAATTGCAG+AGG | - | chr1.4:18743494-18743513 | MS.gene061052:intron | 20.0% |
| !!! | AATTTTGATGACACAAATTT+AGG | + | chr1.4:18742410-18742429 | None:intergenic | 20.0% |
| !!! | AGAATTTCTCATTCAATTTT+AGG | + | chr1.4:18742385-18742404 | None:intergenic | 20.0% |
| !!! | ATTTTTTGGAATTTGTTTCT+GGG | - | chr1.4:18742166-18742185 | MS.gene061052:CDS | 20.0% |
| !!! | CATAAAGATTGAATTTTTGT+TGG | - | chr1.4:18741961-18741980 | MS.gene061052:CDS | 20.0% |
| !!! | CGATTTTTTTTATCTTATGA+TGG | - | chr1.4:18741900-18741919 | MS.gene061052:CDS | 20.0% |
| !!! | GATCAAAATAGTCAAATTTT+AGG | + | chr1.4:18742212-18742231 | None:intergenic | 20.0% |
| !!! | GTTTATTTTTTTTTCCTCTT+TGG | - | chr1.4:18743396-18743415 | MS.gene061052:intron | 20.0% |
| !!! | GTTTCATTTATTTGCTTTTT+GGG | - | chr1.4:18743207-18743226 | MS.gene061052:intron | 20.0% |
| !!! | TGTTTCATTTATTTGCTTTT+TGG | - | chr1.4:18743206-18743225 | MS.gene061052:intron | 20.0% |
| !!! | TTTGGAATTGATTTTGTTTT+TGG | - | chr1.4:18742303-18742322 | MS.gene061052:intron | 20.0% |
| ! | AAATAGGATTACAGATTTGA+TGG | + | chr1.4:18743798-18743817 | None:intergenic | 25.0% |
| ! | TAGACTATTATTCAACAATG+AGG | - | chr1.4:18743752-18743771 | MS.gene061052:intron | 25.0% |
| ! | TATGAGCATTTACTAACATT+TGG | - | chr1.4:18743465-18743484 | MS.gene061052:intron | 25.0% |
| !! | TATTTTCTATGAACACTTGA+AGG | - | chr1.4:18742561-18742580 | MS.gene061052:intron | 25.0% |
| !!! | ATCTGTAATCCTATTTTTGA+AGG | - | chr1.4:18743802-18743821 | MS.gene061052:intron | 25.0% |
| !!! | GAATTGATTTTGTTTTTGGT+TGG | - | chr1.4:18742307-18742326 | MS.gene061052:intron | 25.0% |
| !!! | GATTTTTTGGAATTTGTTTC+TGG | - | chr1.4:18742165-18742184 | MS.gene061052:CDS | 25.0% |
| !!! | GCTTAGGTTTTATGATTTTT+TGG | - | chr1.4:18742152-18742171 | MS.gene061052:CDS | 25.0% |
| !!! | TATCTTATGATGGGTTTTTA+GGG | - | chr1.4:18741910-18741929 | MS.gene061052:CDS | 25.0% |
| !!! | TTATCTTATGATGGGTTTTT+AGG | - | chr1.4:18741909-18741928 | MS.gene061052:CDS | 25.0% |
| AAACTTGAAGATCGAAATCA+TGG | + | chr1.4:18742000-18742019 | None:intergenic | 30.0% | |
| AAAGATTTCTTAGTGAGAAG+AGG | + | chr1.4:18742832-18742851 | None:intergenic | 30.0% | |
| AACTTGAAGATCGAAATCAT+GGG | + | chr1.4:18741999-18742018 | None:intergenic | 30.0% | |
| AAGTCCAAGTAGAATTTCAT+AGG | + | chr1.4:18742532-18742551 | None:intergenic | 30.0% | |
| ACGAATCTCCATATTCATAA+TGG | - | chr1.4:18742644-18742663 | MS.gene061052:intron | 30.0% | |
| CTTTATGAAAAGGGGAATTA+GGG | + | chr1.4:18741948-18741967 | None:intergenic | 30.0% | |
| TACCAATTGCTTAGATTGAA+GGG | + | chr1.4:18741816-18741835 | None:intergenic | 30.0% | |
| TCTTCAATGCCTTCAAAAAT+AGG | + | chr1.4:18743814-18743833 | None:intergenic | 30.0% | |
| TCTTTATGAAAAGGGGAATT+AGG | + | chr1.4:18741949-18741968 | None:intergenic | 30.0% | |
| TGTGCTTGTGTGTTAATATT+GGG | - | chr1.4:18742721-18742740 | MS.gene061052:intron | 30.0% | |
| TGTTTCCTCACAAAATTATC+TGG | + | chr1.4:18743523-18743542 | None:intergenic | 30.0% | |
| TTACCAATTGCTTAGATTGA+AGG | + | chr1.4:18741817-18741836 | None:intergenic | 30.0% | |
| TTACTAGTATTCACATACGA+AGG | - | chr1.4:18743688-18743707 | MS.gene061052:intron | 30.0% | |
| TTCAAGAAAGAAGTTGAAGA+TGG | - | chr1.4:18743981-18744000 | MS.gene061052:CDS | 30.0% | |
| TTGATAGAATTTACGCTCTT+GGG | - | chr1.4:18742453-18742472 | MS.gene061052:intron | 30.0% | |
| ! | AACTGTATTTCTTTTGTGGA+TGG | - | chr1.4:18743622-18743641 | MS.gene061052:intron | 30.0% |
| ! | ATGATTTCGATCTTCAAGTT+TGG | - | chr1.4:18741999-18742018 | MS.gene061052:CDS | 30.0% |
| ! | CATAACATAACTTGTGACAT+TGG | - | chr1.4:18742231-18742250 | MS.gene061052:CDS | 30.0% |
| ! | CTTCTTTCTTGAAGTTTTCT+TGG | + | chr1.4:18743974-18743993 | None:intergenic | 30.0% |
| ! | GATAATTTTGTGAGGAAACA+TGG | - | chr1.4:18743523-18743542 | MS.gene061052:intron | 30.0% |
| ! | TGACAACTGTATTTCTTTTG+TGG | - | chr1.4:18743618-18743637 | MS.gene061052:intron | 30.0% |
| ! | TGATTTCGATCTTCAAGTTT+GGG | - | chr1.4:18742000-18742019 | MS.gene061052:CDS | 30.0% |
| !! | AATATGATACAGTGTTGCTT+AGG | - | chr1.4:18742136-18742155 | MS.gene061052:CDS | 30.0% |
| !! | AGAATGAGCTTGTTAAAAGA+AGG | + | chr1.4:18741785-18741804 | None:intergenic | 30.0% |
| !! | TTGTTTGAAATCCGCTATTT+TGG | - | chr1.4:18743058-18743077 | MS.gene061052:intron | 30.0% |
| AACCCTTCAATCTAAGCAAT+TGG | - | chr1.4:18741811-18741830 | MS.gene061052:CDS | 35.0% | |
| AATAGTCTATCTCAGCAGTA+CGG | + | chr1.4:18743741-18743760 | None:intergenic | 35.0% | |
| ATTATTCAACAATGAGGAGC+CGG | - | chr1.4:18743758-18743777 | MS.gene061052:intron | 35.0% | |
| CCAACAAAGACAAGAAAATC+AGG | - | chr1.4:18743945-18743964 | MS.gene061052:intron | 35.0% | |
| CGATTAAAGTTAACACACCT+GGG | - | chr1.4:18742758-18742777 | MS.gene061052:intron | 35.0% | |
| CTTGATAGAATTTACGCTCT+TGG | - | chr1.4:18742452-18742471 | MS.gene061052:intron | 35.0% | |
| GATTAAAGTTAACACACCTG+GGG | - | chr1.4:18742759-18742778 | MS.gene061052:intron | 35.0% | |
| GCTTCCTATGAAATTCTACT+TGG | - | chr1.4:18742525-18742544 | MS.gene061052:intron | 35.0% | |
| GGATTACAGATTTGATGGAA+AGG | + | chr1.4:18743793-18743812 | None:intergenic | 35.0% | |
| GTGTGCTTGTGTGTTAATAT+TGG | - | chr1.4:18742720-18742739 | MS.gene061052:intron | 35.0% | |
| TAAACTGAACGAGAGATCAT+GGG | + | chr1.4:18742077-18742096 | None:intergenic | 35.0% | |
| TAAGAACAAACATGCAACAC+AGG | + | chr1.4:18742945-18742964 | None:intergenic | 35.0% | |
| TCGATTAAAGTTAACACACC+TGG | - | chr1.4:18742757-18742776 | MS.gene061052:intron | 35.0% | |
| TGTAGGAATTTGAGGATTTG+CGG | + | chr1.4:18742794-18742813 | None:intergenic | 35.0% | |
| TTTGCAGTTGTAGGAATTTG+AGG | + | chr1.4:18742802-18742821 | None:intergenic | 35.0% | |
| ! | CCTGATTTTCTTGTCTTTGT+TGG | + | chr1.4:18743948-18743967 | None:intergenic | 35.0% |
| ! | GGATTCCAGATAATTTTGTG+AGG | - | chr1.4:18743515-18743534 | MS.gene061052:intron | 35.0% |
| ! | GGTTTTTCATTTGCAGTTGT+AGG | + | chr1.4:18742811-18742830 | None:intergenic | 35.0% |
| !! | AGCTTGTTAAAAGAAGGACT+AGG | + | chr1.4:18741779-18741798 | None:intergenic | 35.0% |
| !! | CTTTTTGGGAGTGAACAATT+GGG | - | chr1.4:18743221-18743240 | MS.gene061052:intron | 35.0% |
| !! | TTTTTGGGAGTGAACAATTG+GGG | - | chr1.4:18743222-18743241 | MS.gene061052:intron | 35.0% |
| AGTTGCGACATTCGAAAGTT+GGG | + | chr1.4:18743551-18743570 | None:intergenic | 40.0% | |
| CAATGATTCTGCTGGATGTA+TGG | - | chr1.4:18743894-18743913 | MS.gene061052:intron | 40.0% | |
| CATGATCTCTCGTTCAGTTT+AGG | - | chr1.4:18742076-18742095 | MS.gene061052:CDS | 40.0% | |
| CTAAACTGAACGAGAGATCA+TGG | + | chr1.4:18742078-18742097 | None:intergenic | 40.0% | |
| CTTTAATCGAGCCATGTACT+CGG | + | chr1.4:18742747-18742766 | None:intergenic | 40.0% | |
| GAACAATTGGGGTCATACTT+AGG | - | chr1.4:18743233-18743252 | MS.gene061052:intron | 40.0% | |
| GAACGCTACTCAATTGACAT+TGG | - | chr1.4:18743661-18743680 | MS.gene061052:intron | 40.0% | |
| GAATGAGTCAGAATCCAAAG+AGG | + | chr1.4:18743413-18743432 | None:intergenic | 40.0% | |
| TATGGATCAACTGATACCAG+CGG | - | chr1.4:18743912-18743931 | MS.gene061052:intron | 40.0% | |
| TGCTGAATCCAGGAAATCAA+AGG | + | chr1.4:18743845-18743864 | None:intergenic | 40.0% | |
| TGCTTAGATTGAAGGGTTGT+TGG | + | chr1.4:18741809-18741828 | None:intergenic | 40.0% | |
| TTAATATTGGGCCGAGTACA+TGG | - | chr1.4:18742733-18742752 | MS.gene061052:intron | 40.0% | |
| TTATTCAACAATGAGGAGCC+GGG | - | chr1.4:18743759-18743778 | MS.gene061052:intron | 40.0% | |
| TTCTTATGCATGTTGCCTTG+CGG | - | chr1.4:18742959-18742978 | MS.gene061052:intron | 40.0% | |
| ! | AACGAGAGATCATGGGTTTT+CGG | + | chr1.4:18742070-18742089 | None:intergenic | 40.0% |
| ! | GTATTTCTTTTGTGGATGGC+TGG | - | chr1.4:18743626-18743645 | MS.gene061052:intron | 40.0% |
| !! | GCTTTTTGGGAGTGAACAAT+TGG | - | chr1.4:18743220-18743239 | MS.gene061052:intron | 40.0% |
| !! | TATCGACTCCTTTGATTTCC+TGG | - | chr1.4:18743834-18743853 | MS.gene061052:intron | 40.0% |
| AACCATGTGCGCCAAAATAG+CGG | + | chr1.4:18743072-18743091 | None:intergenic | 45.0% | |
| AATGCTCCAGTAGGGTTTGA+AGG | + | chr1.4:18743868-18743887 | None:intergenic | 45.0% | |
| CAGAACTGTGCACAACATCA+CGG | + | chr1.4:18742999-18743018 | None:intergenic | 45.0% | |
| CAGTTGCGACATTCGAAAGT+TGG | + | chr1.4:18743552-18743571 | None:intergenic | 45.0% | |
| CTTTCTTCCTGCCTTGTGAT+CGG | - | chr1.4:18742871-18742890 | MS.gene061052:intron | 45.0% | |
| GAAGAAAGGATCCGATCACA+AGG | + | chr1.4:18742885-18742904 | None:intergenic | 45.0% | |
| GATCACAAGGCAGGAAGAAA+GGG | + | chr1.4:18742872-18742891 | None:intergenic | 45.0% | |
| TGTTGGATATGATTCTCCGC+TGG | + | chr1.4:18743931-18743950 | None:intergenic | 45.0% | |
| TTGCAAGGCAATGATTCTGC+TGG | - | chr1.4:18743886-18743905 | MS.gene061052:intron | 45.0% | |
| ! | ACATCACGGCCAAGGATTTT+TGG | + | chr1.4:18742985-18743004 | None:intergenic | 45.0% |
| ! | ACGAGAGATCATGGGTTTTC+GGG | + | chr1.4:18742069-18742088 | None:intergenic | 45.0% |
| ! | CTGGCGTCTAGGATTGAAAA+AGG | - | chr1.4:18743594-18743613 | MS.gene061052:intron | 45.0% |
| !! | ACAGGTGACTTTCTAGAGCA+AGG | + | chr1.4:18742927-18742946 | None:intergenic | 45.0% |
| !! | ACTTTCTAGAGCAAGGCAGA+AGG | + | chr1.4:18742920-18742939 | None:intergenic | 45.0% |
| !! | TATTTAAACTTAAATTAATA+AGG | + | chr1.4:18743298-18743317 | None:intergenic | 5.0% |
| AAAGGATCCGATCACAAGGC+AGG | + | chr1.4:18742881-18742900 | None:intergenic | 50.0% | |
| AAGGCAGAAGGATCCAGTCA+TGG | + | chr1.4:18742908-18742927 | None:intergenic | 50.0% | |
| AGGCAGAAGGATCCAGTCAT+GGG | + | chr1.4:18742907-18742926 | None:intergenic | 50.0% | |
| CGATCACAAGGCAGGAAGAA+AGG | + | chr1.4:18742873-18742892 | None:intergenic | 50.0% | |
| GGATCCAGTCATGGGAAGAA+AGG | + | chr1.4:18742899-18742918 | None:intergenic | 50.0% | |
| GGATCCTTTCTTCCCATGAC+TGG | - | chr1.4:18742892-18742911 | MS.gene061052:intron | 50.0% | |
| GTTAACACACCTGGGGTAAG+AGG | - | chr1.4:18742766-18742785 | MS.gene061052:intron | 50.0% | |
| TCAGCACCTTCAAACCCTAC+TGG | - | chr1.4:18743859-18743878 | MS.gene061052:intron | 50.0% | |
| TGCCTTGCAATGCTCCAGTA+GGG | + | chr1.4:18743876-18743895 | None:intergenic | 50.0% | |
| TTGCCTTGCAATGCTCCAGT+AGG | + | chr1.4:18743877-18743896 | None:intergenic | 50.0% | |
| !! | AACCCTACTGGAGCATTGCA+AGG | - | chr1.4:18743871-18743890 | MS.gene061052:intron | 50.0% |
| !! | GGTTTGAAGGTGCTGAATCC+AGG | + | chr1.4:18743855-18743874 | None:intergenic | 50.0% |
| !!! | ATCCGCTATTTTGGCGCACA+TGG | - | chr1.4:18743067-18743086 | MS.gene061052:intron | 50.0% |
| GATGGAAAGGCCCTTCAACC+CGG | + | chr1.4:18743780-18743799 | None:intergenic | 55.0% | |
| GCAACTGTCACTGTTCCTGG+CGG | - | chr1.4:18743565-18743584 | MS.gene061052:intron | 55.0% | |
| GCCTTGCGGCCAAAAATCCT+TGG | - | chr1.4:18742973-18742992 | MS.gene061052:intron | 55.0% | |
| GTCGCAACTGTCACTGTTCC+TGG | - | chr1.4:18743562-18743581 | MS.gene061052:intron | 55.0% | |
| TGTGCACAACATCACGGCCA+AGG | + | chr1.4:18742993-18743012 | None:intergenic | 55.0% | |
| ! | ACAATGAGGAGCCGGGTTGA+AGG | - | chr1.4:18743766-18743785 | MS.gene061052:intron | 55.0% |
| ! | CAATGAGGAGCCGGGTTGAA+GGG | - | chr1.4:18743767-18743786 | MS.gene061052:intron | 55.0% |
| !!! | GCCAAGGATTTTTGGCCGCA+AGG | + | chr1.4:18742977-18742996 | None:intergenic | 55.0% |
| TTTGCGGCTCCTCTTACCCC+AGG | + | chr1.4:18742778-18742797 | None:intergenic | 60.0% | |
| CTGTTCCTGGCGGCACAGTC+TGG | - | chr1.4:18743575-18743594 | MS.gene061052:intron | 65.0% | |
| AGACGCCAGACTGTGCCGCC+AGG | + | chr1.4:18743583-18743602 | None:intergenic | 70.0% | |
| GGCGGCACAGTCTGGCGTCT+AGG | - | chr1.4:18743583-18743602 | MS.gene061052:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 18741773 | 18744014 | 18741773 | ID=MS.gene061052 |
| chr1.4 | mRNA | 18741773 | 18744014 | 18741773 | ID=MS.gene061052.t1;Parent=MS.gene061052 |
| chr1.4 | exon | 18743955 | 18744014 | 18743955 | ID=MS.gene061052.t1.exon1;Parent=MS.gene061052.t1 |
| chr1.4 | CDS | 18743955 | 18744014 | 18743955 | ID=cds.MS.gene061052.t1;Parent=MS.gene061052.t1 |
| chr1.4 | exon | 18741773 | 18742273 | 18741773 | ID=MS.gene061052.t1.exon2;Parent=MS.gene061052.t1 |
| chr1.4 | CDS | 18741773 | 18742273 | 18741773 | ID=cds.MS.gene061052.t1;Parent=MS.gene061052.t1 |
| Gene Sequence |
| Protein sequence |
