AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061102

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061102.t1 MTR_1g047060 48.454 97 43 2 112 208 3 92 5.85e-23 89.4
MS.gene061102.t1 MTR_6g477900 32.738 168 90 8 4 157 6 164 1.28e-18 82.0
MS.gene061102.t1 MTR_4g094302 31.551 187 103 9 4 176 11 186 2.90e-18 79.7
MS.gene061102.t1 MTR_4g101680 32.704 159 84 7 4 148 7 156 7.82e-17 78.6
MS.gene061102.t1 MTR_5g021710 31.210 157 91 5 4 149 8 158 8.97e-17 78.2
MS.gene061102.t1 MTR_5g012080 32.184 174 93 9 4 159 7 173 1.07e-16 78.2
MS.gene061102.t1 MTR_8g076110 28.251 223 138 8 4 210 6 222 1.18e-16 77.8
MS.gene061102.t1 MTR_1g008740 32.716 162 91 6 2 151 25 180 2.31e-16 77.4
MS.gene061102.t1 MTR_1g008740 32.716 162 91 6 2 151 11 166 3.03e-16 77.0
MS.gene061102.t1 MTR_4g094302 33.333 129 77 6 4 132 11 130 1.03e-15 72.4
MS.gene061102.t1 MTR_8g023900 30.625 160 90 7 2 148 10 161 1.13e-15 75.9
MS.gene061102.t1 MTR_8g023900 28.141 199 113 9 4 184 188 374 9.17e-14 70.1
MS.gene061102.t1 MTR_2g093810 32.143 168 88 8 4 154 14 172 1.27e-15 74.7
MS.gene061102.t1 MTR_3g093040 28.646 192 99 10 4 176 108 280 1.36e-15 74.7
MS.gene061102.t1 MTR_5g041940 29.630 162 88 6 4 148 3 155 1.38e-15 73.9
MS.gene061102.t1 MTR_4g036030 32.051 156 89 6 4 148 7 156 1.43e-15 75.1
MS.gene061102.t1 MTR_3g093050 30.357 168 85 9 1 149 19 173 1.47e-15 75.5
MS.gene061102.t1 MTR_3g093050 30.357 168 85 9 1 149 19 173 1.67e-15 75.5
MS.gene061102.t1 MTR_2g080010 29.762 168 102 6 4 164 15 173 3.68e-15 73.9
MS.gene061102.t1 MTR_5g069030 30.952 168 84 9 1 149 22 176 3.68e-15 74.3
MS.gene061102.t1 MTR_8g023930 28.814 177 107 7 2 167 22 190 1.21e-14 72.8
MS.gene061102.t1 MTR_3g096920 29.630 162 86 8 4 148 7 157 1.57e-14 71.6
MS.gene061102.t1 MTR_7g100990 34.815 135 75 6 4 132 11 138 3.13e-14 70.9
MS.gene061102.t1 MTR_4g089135 32.353 136 79 4 4 133 15 143 4.09e-14 70.9
MS.gene061102.t1 MTR_3g109340 30.189 159 92 6 2 148 20 171 7.09e-14 70.1
MS.gene061102.t1 MTR_8g059170 30.247 162 87 7 4 149 14 165 1.29e-13 69.3
MS.gene061102.t1 MTR_3g096140 30.435 161 88 7 3 148 6 157 1.66e-13 68.6
MS.gene061102.t1 MTR_2g079990 29.375 160 89 8 4 149 16 165 1.91e-13 68.9
MS.gene061102.t1 MTR_3g096140 30.435 161 88 7 3 148 6 157 3.54e-13 68.2
MS.gene061102.t1 MTR_6g084430 31.410 156 87 7 4 148 5 151 7.11e-13 67.0
MS.gene061102.t1 MTR_7g085220 26.816 179 98 7 4 157 8 178 7.74e-13 67.0
MS.gene061102.t1 MTR_1g090720 32.121 165 86 6 4 149 42 199 8.06e-13 67.4
MS.gene061102.t1 MTR_8g467490 27.647 170 92 7 2 148 12 173 1.04e-12 67.0
MS.gene061102.t1 MTR_4g098630 30.435 161 91 9 4 149 6 160 1.31e-12 66.2
MS.gene061102.t1 MTR_7g005280 30.128 156 92 6 4 150 15 162 1.48e-12 65.5
MS.gene061102.t1 MTR_4g108760 30.625 160 87 8 4 148 17 167 1.79e-12 66.2
MS.gene061102.t1 MTR_8g023840 29.677 155 86 7 4 145 11 155 3.07e-12 65.5
MS.gene061102.t1 MTR_1g097300 34.074 135 72 5 6 132 21 146 3.61e-12 65.5
MS.gene061102.t1 MTR_7g097090 32.026 153 86 7 4 146 10 154 3.87e-12 64.7
MS.gene061102.t1 MTR_3g116070 30.667 150 86 7 4 144 23 163 4.10e-12 65.1
MS.gene061102.t1 MTR_2g079990 31.655 139 78 7 4 135 16 144 4.22e-12 65.1
MS.gene061102.t1 MTR_3g435150 31.677 161 86 9 3 148 15 166 1.98e-11 62.8
MS.gene061102.t1 MTR_4g075980 28.947 152 92 6 6 148 17 161 2.98e-11 62.4
MS.gene061102.t1 MTR_3g098810 28.144 167 92 7 4 150 14 172 3.48e-11 61.6
MS.gene061102.t1 MTR_8g093580 28.750 160 88 7 6 149 8 157 4.44e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061102.t1 AT4G36160 31.977 172 98 6 4 162 14 179 1.64e-19 86.3
MS.gene061102.t1 AT4G36160 31.977 172 98 6 4 162 10 175 1.65e-19 86.3
MS.gene061102.t1 AT4G36160 31.977 172 98 6 4 162 10 175 1.65e-19 86.3
MS.gene061102.t1 AT2G18060 32.164 171 98 6 4 162 9 173 4.16e-19 85.1
MS.gene061102.t1 AT2G18060 32.164 171 98 6 4 162 9 173 4.16e-19 85.1
MS.gene061102.t1 AT3G17730 32.500 160 86 8 4 149 6 157 1.76e-18 81.6
MS.gene061102.t1 AT5G62380 30.542 203 111 8 4 192 7 193 2.74e-18 82.8
MS.gene061102.t1 AT5G62380 30.542 203 111 8 4 192 7 193 2.74e-18 82.8
MS.gene061102.t1 AT2G24430 33.962 159 86 6 2 148 14 165 3.43e-17 79.3
MS.gene061102.t1 AT2G24430 33.962 159 86 6 2 148 14 165 3.43e-17 79.3
MS.gene061102.t1 AT1G71930 30.769 156 91 5 4 148 9 158 1.51e-16 77.4
MS.gene061102.t1 AT1G71930 30.769 156 91 5 4 148 9 158 1.51e-16 77.4
MS.gene061102.t1 AT1G12260 33.333 159 83 8 4 148 7 156 1.73e-16 77.4
MS.gene061102.t1 AT1G12260 33.333 159 83 8 4 148 7 156 3.29e-16 77.0
MS.gene061102.t1 AT1G76420 32.919 161 81 8 4 148 22 171 3.57e-16 76.6
MS.gene061102.t1 AT3G10490 31.875 160 88 6 4 149 27 179 3.82e-16 75.1
MS.gene061102.t1 AT1G62700 32.075 159 85 7 4 148 7 156 1.01e-15 75.9
MS.gene061102.t1 AT1G62700 32.075 159 85 7 4 148 7 156 1.01e-15 75.9
MS.gene061102.t1 AT1G54330 30.128 156 92 6 4 149 6 154 2.01e-15 73.9
MS.gene061102.t1 AT5G64530 30.412 194 101 7 4 176 3 183 2.64e-15 72.0
MS.gene061102.t1 AT3G10490 31.875 160 88 6 4 149 27 179 5.24e-15 73.9
MS.gene061102.t1 AT3G10480 31.875 160 88 6 4 149 27 179 9.21e-15 73.2
MS.gene061102.t1 AT3G49530 28.144 167 91 9 1 149 10 165 1.56e-14 72.4
MS.gene061102.t1 AT4G27410 28.652 178 88 8 4 151 14 182 1.69e-14 71.6
MS.gene061102.t1 AT3G49530 28.144 167 91 9 1 149 10 165 1.73e-14 72.4
MS.gene061102.t1 AT5G39610 31.677 161 86 8 4 149 20 171 3.17e-14 70.5
MS.gene061102.t1 AT3G10480 31.447 159 89 6 4 149 27 178 3.31e-14 71.6
MS.gene061102.t1 AT5G46590 31.210 157 86 7 4 145 6 155 3.96e-14 70.5
MS.gene061102.t1 AT1G32510 28.743 167 93 7 3 149 5 165 5.68e-14 69.7
MS.gene061102.t1 AT5G24590 29.268 164 87 8 4 149 13 165 1.21e-13 69.7
MS.gene061102.t1 AT5G64530 34.884 129 71 5 4 132 3 118 1.53e-13 66.6
MS.gene061102.t1 AT5G04395 32.886 149 79 6 4 135 28 172 1.92e-13 67.0
MS.gene061102.t1 AT1G26870 28.824 170 90 7 2 148 14 175 2.58e-13 68.9
MS.gene061102.t1 AT5G22290 30.405 148 86 7 6 145 23 161 2.63e-13 68.6
MS.gene061102.t1 AT1G77450 28.415 183 98 7 4 164 10 181 2.66e-13 67.8
MS.gene061102.t1 AT3G18400 31.847 157 86 9 4 148 5 152 2.97e-13 68.2
MS.gene061102.t1 AT4G35580 28.415 183 101 9 1 163 6 178 3.13e-13 68.6
MS.gene061102.t1 AT4G35580 28.415 183 101 9 1 163 6 178 3.34e-13 68.6
MS.gene061102.t1 AT1G33060 27.976 168 87 8 1 148 21 174 3.39e-13 68.6
MS.gene061102.t1 AT4G35580 27.322 183 103 8 1 163 6 178 3.61e-13 68.6
MS.gene061102.t1 AT1G33060 27.976 168 87 8 1 148 21 174 3.71e-13 68.6
MS.gene061102.t1 AT5G61430 31.288 163 88 8 4 151 16 169 4.59e-13 67.8
MS.gene061102.t1 AT3G10500 31.013 158 89 6 4 148 9 159 5.22e-13 68.2
MS.gene061102.t1 AT1G52890 29.448 163 85 7 4 149 14 163 6.65e-13 67.0
MS.gene061102.t1 AT3G29035 33.333 135 75 6 4 132 24 149 7.44e-13 67.0
MS.gene061102.t1 AT4G10350 31.410 156 88 7 4 146 9 158 7.83e-13 67.0
MS.gene061102.t1 AT5G04410 29.114 158 92 6 4 148 9 159 1.19e-12 67.0
MS.gene061102.t1 AT5G46590 30.935 139 82 6 4 135 6 137 3.31e-12 64.7
MS.gene061102.t1 AT5G50820 33.088 136 76 5 4 135 17 141 3.58e-12 63.5
MS.gene061102.t1 AT3G04060 29.508 183 104 8 4 170 20 193 4.59e-12 64.7
MS.gene061102.t1 AT5G07680 31.288 163 88 8 4 151 17 170 5.05e-12 64.7
MS.gene061102.t1 AT5G07680 31.288 163 88 8 4 151 3 156 5.28e-12 64.7
MS.gene061102.t1 AT3G15510 27.778 162 101 6 10 164 23 175 5.76e-12 64.7
MS.gene061102.t1 AT3G12977 27.072 181 98 8 4 164 18 184 3.30e-11 62.0
MS.gene061102.t1 AT5G18270 30.247 162 88 8 4 149 21 173 3.43e-11 62.4
MS.gene061102.t1 AT5G18270 30.247 162 88 8 4 149 21 173 3.95e-11 62.0
MS.gene061102.t1 AT1G32870 31.579 133 80 5 4 132 10 135 8.38e-11 61.6
MS.gene061102.t1 AT1G32870 31.579 133 80 5 4 132 10 135 8.41e-11 61.6

Find 45 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGGTTCTGACTTGATTA+AGG 0.237815 1.4:+19315444 MS.gene061102:CDS
GGCATTGTAAGACTGGATTT+TGG 0.240614 1.4:+19315578 MS.gene061102:CDS
CCTCCTCAGCTCATCACTTT+TGG 0.293515 1.4:-19315557 None:intergenic
CCTTGTGTGAGGGAAGAAAA+AGG 0.370691 1.4:-19315515 None:intergenic
TGAAGGAACTCAACAACTTA+AGG 0.384542 1.4:+19315989 MS.gene061102:CDS
GCAATTCAAACGGATCATAT+TGG 0.403266 1.4:-19315480 None:intergenic
AGGTGATGCATTGCATTTCA+TGG 0.410069 1.4:+19316052 MS.gene061102:CDS
CGTTTGAATTGCATCTTGCT+CGG 0.448065 1.4:+19315491 MS.gene061102:CDS
AAAACACGGCAAACAACAAA+AGG 0.449123 1.4:-19315867 None:intergenic
TGTCCAGATCCATCCCTCTA+TGG 0.461584 1.4:-19315896 None:intergenic
CTGAGGAGGCATTGTAAGAC+TGG 0.469451 1.4:+19315571 MS.gene061102:CDS
GAAGGAACTCAACAACTTAA+GGG 0.473282 1.4:+19315990 MS.gene061102:CDS
CCGCCATAGAGGGATGGATC+TGG 0.481918 1.4:+19315893 MS.gene061102:CDS
GAAGAGGTTCAAAATTTCCA+TGG 0.507513 1.4:+19315427 MS.gene061102:CDS
GGATCTGGACACTGAATTGT+GGG 0.513521 1.4:+19315908 MS.gene061102:CDS
TGGATCTGGACACTGAATTG+TGG 0.515403 1.4:+19315907 MS.gene061102:CDS
TATTCAAAACCTTTATGTGT+TGG 0.520837 1.4:+19316277 MS.gene061102:CDS
TCTGATGAGAAGGCGAATGA+AGG 0.523662 1.4:+19315972 MS.gene061102:CDS
GATTTGCTTCCACCTGGTGT+TGG 0.532322 1.4:+19315349 MS.gene061102:CDS
ACCTTCATCGACATCAGATA+AGG 0.533255 1.4:-19315931 None:intergenic
AGAACGCAATCAAAACTAGC+TGG 0.537621 1.4:+19315698 MS.gene061102:CDS
TGGAGCTGATGATGTGTTGG+TGG 0.544087 1.4:+19315633 MS.gene061102:CDS
CGAGCAAGATGCAATTCAAA+CGG 0.545354 1.4:-19315490 None:intergenic
CACTCTTGTTAACAACCCTC+AGG 0.546751 1.4:+19315735 MS.gene061102:CDS
GTCGATGAAGGTGATGTTGT+TGG 0.547764 1.4:+19315942 MS.gene061102:CDS
TGTTGGAGCTGATGATGTGT+TGG 0.549550 1.4:+19315630 MS.gene061102:CDS
GCTGTCGAAGACATTACTGT+TGG 0.561036 1.4:+19315613 MS.gene061102:CDS
CCAAAAGTGATGAGCTGAGG+AGG 0.564041 1.4:+19315557 MS.gene061102:CDS
TAGCAAGGTAGTAGCTAACA+AGG 0.569555 1.4:-19315393 None:intergenic
GCAATGGATTTGCTTCCACC+TGG 0.569568 1.4:+19315343 None:intergenic
CAGTAAAACTCCCTTGTGTG+AGG 0.577220 1.4:-19315526 None:intergenic
AAGGAACTCAACAACTTAAG+GGG 0.586043 1.4:+19315991 MS.gene061102:CDS
GCCTTATCTGATGTCGATGA+AGG 0.592468 1.4:+19315930 MS.gene061102:CDS
AGTAAAACTCCCTTGTGTGA+GGG 0.603789 1.4:-19315525 None:intergenic
GGAGCTGATGATGTGTTGGT+GGG 0.610668 1.4:+19315634 MS.gene061102:CDS
TAACAAGGAGTTCATCAGAA+GGG 0.633655 1.4:-19315378 None:intergenic
CCTTAATCAAGTCAGAACCA+TGG 0.642289 1.4:-19315444 None:intergenic
CTGCCAAAAGTGATGAGCTG+AGG 0.648920 1.4:+19315554 MS.gene061102:CDS
GGGACGAAACCAACACCAGG+TGG 0.656589 1.4:-19315358 None:intergenic
GCTGATGCTAGTGCTGAGCA+AGG 0.658942 1.4:+19316032 MS.gene061102:CDS
TGGTGACGACTCTGATGAGA+AGG 0.667599 1.4:+19315962 MS.gene061102:CDS
CTAACAAGGAGTTCATCAGA+AGG 0.675712 1.4:-19315379 None:intergenic
CCAGATCCATCCCTCTATGG+CGG 0.685304 1.4:-19315893 None:intergenic
GAAGGGACGAAACCAACACC+AGG 0.689839 1.4:-19315361 None:intergenic
AGGAACTCAACAACTTAAGG+GGG 0.701895 1.4:+19315992 MS.gene061102:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATATAAATAATTGTGT+AGG + chr1.4:19315842-19315861 MS.gene061102:intron 10.0%
!! CATAAAAATCATTAATATTG+TGG - chr1.4:19316214-19316233 None:intergenic 15.0%
!! TCGATGATTAATTTATGTAT+TGG + chr1.4:19315802-19315821 MS.gene061102:intron 20.0%
!!! AATATATTTTACCTGAAAAG+TGG - chr1.4:19316087-19316106 None:intergenic 20.0%
! TATTCAAAACCTTTATGTGT+TGG + chr1.4:19316277-19316296 MS.gene061102:CDS 25.0%
!! TATGACCAACTTTTAAATCA+TGG + chr1.4:19316238-19316257 MS.gene061102:intron 25.0%
!! TCTCTCTTCTTTTTCTATAT+AGG + chr1.4:19315664-19315683 MS.gene061102:CDS 25.0%
!!! CTCGATATTTATTTTGTCAT+CGG + chr1.4:19316119-19316138 MS.gene061102:intron 25.0%
CAAAAACTACCAACACATAA+AGG - chr1.4:19316289-19316308 None:intergenic 30.0%
TGCTAACAAAAACAATGAAG+AGG + chr1.4:19315411-19315430 MS.gene061102:CDS 30.0%
TGTGACCATGATTTAAAAGT+TGG - chr1.4:19316246-19316265 None:intergenic 30.0%
TTAAATCATGGTCACACTAT+AGG + chr1.4:19316250-19316269 MS.gene061102:intron 30.0%
!!! CTTCATTGTTTTTGTTAGCA+AGG - chr1.4:19315411-19315430 None:intergenic 30.0%
!!! TTATGTGTTGGTAGTTTTTG+TGG + chr1.4:19316289-19316308 MS.gene061102:CDS 30.0%
AAAACACGGCAAACAACAAA+AGG - chr1.4:19315870-19315889 None:intergenic 35.0%
AAAATACCTCCATCATATGC+GGG + chr1.4:19316188-19316207 MS.gene061102:intron 35.0%
AAGGAACTCAACAACTTAAG+GGG + chr1.4:19315991-19316010 MS.gene061102:CDS 35.0%
CAAAATACCTCCATCATATG+CGG + chr1.4:19316187-19316206 MS.gene061102:intron 35.0%
GAAGAGGTTCAAAATTTCCA+TGG + chr1.4:19315427-19315446 MS.gene061102:CDS 35.0%
GAAGGAACTCAACAACTTAA+GGG + chr1.4:19315990-19316009 MS.gene061102:CDS 35.0%
GCAATTCAAACGGATCATAT+TGG - chr1.4:19315483-19315502 None:intergenic 35.0%
TAACAAGGAGTTCATCAGAA+GGG - chr1.4:19315381-19315400 None:intergenic 35.0%
TGAAGGAACTCAACAACTTA+AGG + chr1.4:19315989-19316008 MS.gene061102:CDS 35.0%
!!! TAGTTTTGATTGCGTTCTGA+GGG - chr1.4:19315696-19315715 None:intergenic 35.0%
AATCATGGTCACACTATAGG+TGG + chr1.4:19316253-19316272 MS.gene061102:intron 40.0%
ACCTTCATCGACATCAGATA+AGG - chr1.4:19315934-19315953 None:intergenic 40.0%
AGAACGCAATCAAAACTAGC+TGG + chr1.4:19315698-19315717 MS.gene061102:CDS 40.0%
AGGAACTCAACAACTTAAGG+GGG + chr1.4:19315992-19316011 MS.gene061102:CDS 40.0%
AGGTGATGCATTGCATTTCA+TGG + chr1.4:19316052-19316071 MS.gene061102:CDS 40.0%
AGTAAAACTCCCTTGTGTGA+GGG - chr1.4:19315528-19315547 None:intergenic 40.0%
CCTTAATCAAGTCAGAACCA+TGG - chr1.4:19315447-19315466 None:intergenic 40.0%
CGAGCAAGATGCAATTCAAA+CGG - chr1.4:19315493-19315512 None:intergenic 40.0%
CGTTTGAATTGCATCTTGCT+CGG + chr1.4:19315491-19315510 MS.gene061102:CDS 40.0%
CTAACAAGGAGTTCATCAGA+AGG - chr1.4:19315382-19315401 None:intergenic 40.0%
TAGCAAGGTAGTAGCTAACA+AGG - chr1.4:19315396-19315415 None:intergenic 40.0%
TTCCCAAATGACATACCTGA+GGG - chr1.4:19315753-19315772 None:intergenic 40.0%
TTTCCCAAATGACATACCTG+AGG - chr1.4:19315754-19315773 None:intergenic 40.0%
! AACCCTCAGGTATGTCATTT+GGG + chr1.4:19315748-19315767 MS.gene061102:intron 40.0%
! ACTGGATTTTGGATGCAGAT+GGG + chr1.4:19315589-19315608 MS.gene061102:CDS 40.0%
! CTTTTTCTTCCCTCACACAA+GGG + chr1.4:19315516-19315535 MS.gene061102:CDS 40.0%
! GGCATTGTAAGACTGGATTT+TGG + chr1.4:19315578-19315597 MS.gene061102:CDS 40.0%
!! CCATGGTTCTGACTTGATTA+AGG + chr1.4:19315444-19315463 MS.gene061102:CDS 40.0%
!!! AGTTTTGATTGCGTTCTGAG+GGG - chr1.4:19315695-19315714 None:intergenic 40.0%
!!! CTAGTTTTGATTGCGTTCTG+AGG - chr1.4:19315697-19315716 None:intergenic 40.0%
ACTCAACAACTTAAGGGGGT+TGG + chr1.4:19315996-19316015 MS.gene061102:CDS 45.0%
ATATTGTGGCCCGCATATGA+TGG - chr1.4:19316200-19316219 None:intergenic 45.0%
CAACCCTCAGGTATGTCATT+TGG + chr1.4:19315747-19315766 MS.gene061102:intron 45.0%
CACTCTTGTTAACAACCCTC+AGG + chr1.4:19315735-19315754 MS.gene061102:CDS 45.0%
CAGTAAAACTCCCTTGTGTG+AGG - chr1.4:19315529-19315548 None:intergenic 45.0%
CCTTGTGTGAGGGAAGAAAA+AGG - chr1.4:19315518-19315537 None:intergenic 45.0%
CTCAACAACTTAAGGGGGTT+GGG + chr1.4:19315997-19316016 MS.gene061102:CDS 45.0%
CTCTATGGCGGTCAAAAACA+CGG - chr1.4:19315884-19315903 None:intergenic 45.0%
GCCTTATCTGATGTCGATGA+AGG + chr1.4:19315930-19315949 MS.gene061102:CDS 45.0%
GCTGTCGAAGACATTACTGT+TGG + chr1.4:19315613-19315632 MS.gene061102:CDS 45.0%
GGATCTGGACACTGAATTGT+GGG + chr1.4:19315908-19315927 MS.gene061102:CDS 45.0%
GTCGATGAAGGTGATGTTGT+TGG + chr1.4:19315942-19315961 MS.gene061102:CDS 45.0%
TCTGATGAGAAGGCGAATGA+AGG + chr1.4:19315972-19315991 MS.gene061102:CDS 45.0%
TGGATCTGGACACTGAATTG+TGG + chr1.4:19315907-19315926 MS.gene061102:CDS 45.0%
! CCTTTTTCTTCCCTCACACA+AGG + chr1.4:19315515-19315534 MS.gene061102:CDS 45.0%
! GACTGGATTTTGGATGCAGA+TGG + chr1.4:19315588-19315607 MS.gene061102:CDS 45.0%
! TGTTGGAGCTGATGATGTGT+TGG + chr1.4:19315630-19315649 MS.gene061102:CDS 45.0%
!! GTGTTTTTGACCGCCATAGA+GGG + chr1.4:19315883-19315902 MS.gene061102:CDS 45.0%
CCAAAAGTGATGAGCTGAGG+AGG + chr1.4:19315557-19315576 MS.gene061102:CDS 50.0%
CTGCCAAAAGTGATGAGCTG+AGG + chr1.4:19315554-19315573 MS.gene061102:CDS 50.0%
TGTCCAGATCCATCCCTCTA+TGG - chr1.4:19315899-19315918 None:intergenic 50.0%
! CCTCCTCAGCTCATCACTTT+TGG - chr1.4:19315560-19315579 None:intergenic 50.0%
! GATTTGCTTCCACCTGGTGT+TGG + chr1.4:19315349-19315368 MS.gene061102:CDS 50.0%
! GGAGCTGATGATGTGTTGGT+GGG + chr1.4:19315634-19315653 MS.gene061102:CDS 50.0%
! TGGAGCTGATGATGTGTTGG+TGG + chr1.4:19315633-19315652 MS.gene061102:CDS 50.0%
! TGGTGACGACTCTGATGAGA+AGG + chr1.4:19315962-19315981 MS.gene061102:CDS 50.0%
! TTTTGACCGCCATAGAGGGA+TGG + chr1.4:19315887-19315906 MS.gene061102:CDS 50.0%
!! CGTGTTTTTGACCGCCATAG+AGG + chr1.4:19315882-19315901 MS.gene061102:CDS 50.0%
!! CTGAGGAGGCATTGTAAGAC+TGG + chr1.4:19315571-19315590 MS.gene061102:CDS 50.0%
!!! GGCTACTCAAGCCACTTTTC+AGG + chr1.4:19316073-19316092 MS.gene061102:CDS 50.0%
CCAGATCCATCCCTCTATGG+CGG - chr1.4:19315896-19315915 None:intergenic 55.0%
GAAGGGACGAAACCAACACC+AGG - chr1.4:19315364-19315383 None:intergenic 55.0%
TTGTGGCCCGCATATGATGG+AGG - chr1.4:19316197-19316216 None:intergenic 55.0%
! GCTGATGCTAGTGCTGAGCA+AGG + chr1.4:19316032-19316051 MS.gene061102:CDS 55.0%
CCGCCATAGAGGGATGGATC+TGG + chr1.4:19315893-19315912 MS.gene061102:CDS 60.0%
GGGACGAAACCAACACCAGG+TGG - chr1.4:19315361-19315380 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 19315346 19316322 19315346 ID=MS.gene061102
chr1.4 mRNA 19315346 19316322 19315346 ID=MS.gene061102.t1;Parent=MS.gene061102
chr1.4 exon 19315346 19315756 19315346 ID=MS.gene061102.t1.exon1;Parent=MS.gene061102.t1
chr1.4 CDS 19315346 19315756 19315346 ID=cds.MS.gene061102.t1;Parent=MS.gene061102.t1
chr1.4 exon 19315864 19316094 19315864 ID=MS.gene061102.t1.exon2;Parent=MS.gene061102.t1
chr1.4 CDS 19315864 19316094 19315864 ID=cds.MS.gene061102.t1;Parent=MS.gene061102.t1
chr1.4 exon 19316272 19316322 19316272 ID=MS.gene061102.t1.exon3;Parent=MS.gene061102.t1
chr1.4 CDS 19316272 19316322 19316272 ID=cds.MS.gene061102.t1;Parent=MS.gene061102.t1
Gene Sequence

>MS.gene061102

ATGGATTTGCTTCCACCTGGTGTTGGTTTCGTCCCTTCTGATGAACTCCTTGTTAGCTACTACCTTGCTAACAAAAACAATGAAGAGGTTCAAAATTTCCATGGTTCTGACTTGATTAAGGAGCTAAACATGTACCAATATGATCCGTTTGAATTGCATCTTGCTCGGTCCTTTTTCTTCCCTCACACAAGGGAGTTTTACTGCTTCACTGCCAAAAGTGATGAGCTGAGGAGGCATTGTAAGACTGGATTTTGGATGCAGATGGGAGCTGTCGAAGACATTACTGTTGGAGCTGATGATGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTCTATATAGGAAATTCCCCTCAGAACGCAATCAAAACTAGCTGGACTATGTACGAGTACACTCTTGTTAACAACCCTCAGGTATGTCATTTGGGAAAACTAACTTTCACTATGTTCGTTATTTCATCGATGATTAATTTATGTATTGGTAACGACTAACTATTTTTTTAATATAAATAATTGTGTAGGCTCCTTTTGTTGTTTGCCGTGTTTTTGACCGCCATAGAGGGATGGATCTGGACACTGAATTGTGGGCCTTATCTGATGTCGATGAAGGTGATGTTGTTGGTGACGACTCTGATGAGAAGGCGAATGAAGGAACTCAACAACTTAAGGGGGTTGGGACTAGTTATAGTGCTGATGCTAGTGCTGAGCAAGGTGATGCATTGCATTTCATGGCTACTCAAGCCACTTTTCAGGTAAAATATATTTCATTTTGATCTCTCGATATTTATTTTGTCATCGGCAACAATTTTACAATGCTTCACTTTCAATTAGACGTGAGTTTGAACAAAATACCTCCATCATATGCGGGCCACAATATTAATGATTTTTATGTATGTATGACCAACTTTTAAATCATGGTCACACTATAGGTGGCTATTCAAAACCTTTATGTGTTGGTAGTTTTTGTGGTTGATGTTTGA
Protein sequence

>MS.gene061102.t1

MDLLPPGVGFVPSDELLVSYYLANKNNEEVQNFHGSDLIKELNMYQYDPFELHLARSFFFPHTREFYCFTAKSDELRRHCKTGFWMQMGAVEDITVGADDVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTLVNNPQAPFVVCRVFDRHRGMDLDTELWALSDVDEGDVVGDDSDEKANEGTQQLKGVGTSYSADASAEQGDALHFMATQATFQVAIQNLYVLVVFVVDV