AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061103

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061103.t1 MTR_1g047060 51.515 99 39 2 112 210 3 92 1.42e-24 93.2
MS.gene061103.t1 MTR_6g477900 32.911 158 82 7 4 146 6 154 2.48e-18 80.9
MS.gene061103.t1 MTR_1g008740 33.951 162 89 6 2 151 25 180 8.38e-18 80.9
MS.gene061103.t1 MTR_1g008740 34.395 157 85 6 2 146 11 161 1.07e-17 80.5
MS.gene061103.t1 MTR_4g101680 34.395 157 80 6 4 146 7 154 2.15e-17 79.7
MS.gene061103.t1 MTR_2g086880 31.788 151 79 7 6 145 20 157 3.10e-17 80.1
MS.gene061103.t1 MTR_5g012080 33.333 159 81 8 4 146 7 156 3.14e-17 79.3
MS.gene061103.t1 MTR_2g086880 31.788 151 79 7 6 145 20 157 3.83e-17 79.7
MS.gene061103.t1 MTR_4g094302 30.481 187 105 8 4 176 11 186 4.88e-17 76.3
MS.gene061103.t1 MTR_3g064580 34.375 160 78 8 4 146 6 155 2.16e-16 77.4
MS.gene061103.t1 MTR_5g021710 32.468 154 87 5 4 146 8 155 2.83e-16 76.6
MS.gene061103.t1 MTR_3g109340 33.121 157 86 6 2 146 20 169 3.15e-16 76.6
MS.gene061103.t1 MTR_5g041940 30.625 160 85 6 4 146 3 153 4.39e-16 75.1
MS.gene061103.t1 MTR_4g036030 33.758 157 81 7 4 146 7 154 4.55e-16 75.9
MS.gene061103.t1 MTR_1g096430 31.288 163 92 6 1 149 1 157 5.55e-16 75.5
MS.gene061103.t1 MTR_3g093040 29.891 184 91 10 4 168 108 272 1.34e-15 74.3
MS.gene061103.t1 MTR_4g094302 34.109 129 76 5 4 132 11 130 1.67e-15 71.2
MS.gene061103.t1 MTR_7g100990 27.523 218 119 8 4 204 11 206 1.87e-15 73.9
MS.gene061103.t1 MTR_4g081870 30.625 160 85 7 4 146 9 159 4.05e-15 72.4
MS.gene061103.t1 MTR_2g064090 30.573 157 88 7 4 146 6 155 4.13e-15 73.2
MS.gene061103.t1 MTR_2g093810 31.447 159 85 6 4 145 14 165 5.76e-15 72.8
MS.gene061103.t1 MTR_2g080010 30.488 164 93 5 4 161 15 163 5.95e-15 72.8
MS.gene061103.t1 MTR_8g059170 32.075 159 82 7 4 146 14 162 1.32e-14 71.6
MS.gene061103.t1 MTR_2g079990 29.670 182 96 8 4 163 16 187 1.67e-14 71.6
MS.gene061103.t1 MTR_3g109340 31.410 156 89 6 2 146 20 168 1.72e-14 71.6
MS.gene061103.t1 MTR_8g023930 28.571 175 110 5 2 167 22 190 1.84e-14 71.6
MS.gene061103.t1 MTR_7g105170 28.485 165 96 7 1 146 1 162 2.49e-14 70.1
MS.gene061103.t1 MTR_4g089135 33.088 136 78 4 4 133 15 143 2.73e-14 70.9
MS.gene061103.t1 MTR_5g069030 30.909 165 82 9 1 146 22 173 3.17e-14 71.2
MS.gene061103.t1 MTR_6g084430 31.818 154 85 6 4 146 5 149 6.20e-14 69.7
MS.gene061103.t1 MTR_6g011860 26.638 229 132 9 1 206 12 227 6.77e-14 70.1
MS.gene061103.t1 MTR_3g096140 30.818 159 86 6 3 146 6 155 8.69e-14 68.9
MS.gene061103.t1 MTR_7g005280 31.126 151 89 6 4 146 15 158 1.13e-13 68.2
MS.gene061103.t1 MTR_3g096140 30.818 159 86 6 3 146 6 155 1.88e-13 68.6
MS.gene061103.t1 MTR_8g023900 27.684 177 109 6 2 166 10 179 2.19e-13 68.6
MS.gene061103.t1 MTR_8g023900 27.604 192 112 9 7 184 196 374 6.99e-11 61.2
MS.gene061103.t1 MTR_8g467490 27.976 168 90 7 2 146 12 171 3.98e-13 67.8
MS.gene061103.t1 MTR_1g097300 32.653 147 79 6 6 144 21 155 4.01e-13 68.2
MS.gene061103.t1 MTR_3g088110 30.000 160 86 6 4 147 7 156 6.83e-13 66.6
MS.gene061103.t1 MTR_4g098630 32.911 158 85 10 4 146 6 157 1.78e-12 65.5
MS.gene061103.t1 MTR_2g079990 32.394 142 79 6 4 138 16 147 2.23e-12 65.5
MS.gene061103.t1 MTR_3g116070 29.054 148 91 5 4 144 23 163 2.28e-12 65.5
MS.gene061103.t1 MTR_8g023840 29.870 154 89 7 4 146 11 156 2.45e-12 65.5
MS.gene061103.t1 MTR_1g090723 28.205 156 90 7 6 147 10 157 6.46e-12 64.3
MS.gene061103.t1 MTR_1g090723 28.205 156 90 7 6 147 10 157 7.73e-12 64.3
MS.gene061103.t1 MTR_1g090720 32.099 162 84 6 4 146 42 196 9.56e-12 63.9
MS.gene061103.t1 MTR_4g075980 31.126 151 86 7 6 146 17 159 9.98e-12 63.2
MS.gene061103.t1 MTR_8g024480 26.147 218 113 9 4 190 15 215 1.58e-11 63.2
MS.gene061103.t1 MTR_2157s0010 28.402 169 85 9 4 146 8 166 2.50e-11 62.0
MS.gene061103.t1 MTR_0036s0150 27.273 154 94 6 6 147 7 154 3.03e-11 62.4
MS.gene061103.t1 MTR_1g090723 27.389 157 91 7 6 147 10 158 3.46e-11 62.4
MS.gene061103.t1 MTR_8g093580 29.560 159 86 7 4 146 6 154 4.15e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061103.t1 AT3G17730 33.544 158 81 8 4 146 6 154 6.39e-19 82.4
MS.gene061103.t1 AT2G24430 36.306 157 81 6 2 146 14 163 1.14e-18 82.8
MS.gene061103.t1 AT2G24430 36.306 157 81 6 2 146 14 163 1.14e-18 82.8
MS.gene061103.t1 AT2G27300 30.822 146 91 4 4 145 14 153 4.64e-18 81.3
MS.gene061103.t1 AT1G12260 36.306 157 77 8 4 146 7 154 5.49e-18 81.3
MS.gene061103.t1 AT1G12260 36.306 157 77 8 4 146 7 154 1.10e-17 80.9
MS.gene061103.t1 AT5G62380 32.143 196 91 9 4 168 7 191 1.12e-17 80.5
MS.gene061103.t1 AT5G62380 32.143 196 91 9 4 168 7 191 1.12e-17 80.5
MS.gene061103.t1 AT3G10490 33.758 157 83 6 4 146 27 176 6.12e-17 77.0
MS.gene061103.t1 AT3G44290 29.167 144 92 4 6 145 16 153 6.14e-17 76.6
MS.gene061103.t1 AT4G36160 32.468 154 87 5 4 146 14 161 7.36e-17 78.6
MS.gene061103.t1 AT4G36160 32.468 154 87 5 4 146 10 157 7.88e-17 78.2
MS.gene061103.t1 AT4G36160 32.468 154 87 5 4 146 10 157 7.88e-17 78.2
MS.gene061103.t1 AT1G62700 34.395 157 80 7 4 146 7 154 8.54e-17 78.2
MS.gene061103.t1 AT1G62700 34.395 157 80 7 4 146 7 154 8.54e-17 78.2
MS.gene061103.t1 AT1G76420 32.075 159 83 6 4 147 22 170 9.75e-17 77.8
MS.gene061103.t1 AT1G71930 31.210 157 91 5 4 149 9 159 1.82e-16 77.0
MS.gene061103.t1 AT1G71930 31.210 157 91 5 4 149 9 159 1.82e-16 77.0
MS.gene061103.t1 AT4G27410 32.099 162 86 7 4 151 14 165 2.50e-16 76.3
MS.gene061103.t1 AT3G44290 29.167 144 92 4 6 145 16 153 2.52e-16 76.6
MS.gene061103.t1 AT1G65910 30.415 217 108 10 4 201 6 198 3.17e-16 77.0
MS.gene061103.t1 AT3G10490 33.758 157 83 6 4 146 27 176 3.69e-16 76.6
MS.gene061103.t1 AT2G18060 31.818 154 88 5 4 146 9 156 5.02e-16 75.9
MS.gene061103.t1 AT2G18060 31.818 154 88 5 4 146 9 156 5.02e-16 75.9
MS.gene061103.t1 AT5G22290 31.034 145 89 5 6 145 23 161 7.13e-16 75.5
MS.gene061103.t1 AT3G10480 33.758 157 83 6 4 146 27 176 7.74e-16 75.9
MS.gene061103.t1 AT4G17980 31.056 161 83 6 4 145 6 157 1.16e-15 73.9
MS.gene061103.t1 AT4G17980 31.056 161 83 6 4 145 6 157 1.27e-15 74.3
MS.gene061103.t1 AT5G66300 31.646 158 84 7 4 146 12 160 3.27e-15 73.2
MS.gene061103.t1 AT3G10480 33.333 156 84 6 4 146 27 175 3.85e-15 73.9
MS.gene061103.t1 AT5G17260 30.380 158 87 7 4 146 6 155 3.91e-15 73.9
MS.gene061103.t1 AT4G27410 30.114 176 88 7 4 151 14 182 4.16e-15 73.2
MS.gene061103.t1 AT1G69490 30.000 160 86 6 4 146 9 159 4.44e-15 72.4
MS.gene061103.t1 AT1G26870 29.341 167 89 5 2 146 14 173 8.87e-15 72.8
MS.gene061103.t1 AT1G54330 30.719 153 89 6 4 146 6 151 9.96e-15 71.6
MS.gene061103.t1 AT5G39610 31.646 158 84 7 4 146 20 168 1.13e-14 71.6
MS.gene061103.t1 AT1G33280 32.051 156 84 7 4 146 8 154 2.68e-14 70.5
MS.gene061103.t1 AT3G10500 32.692 156 85 6 4 146 9 157 3.53e-14 71.2
MS.gene061103.t1 AT5G24590 30.435 161 83 8 4 146 13 162 3.55e-14 70.9
MS.gene061103.t1 AT5G08790 31.765 170 84 8 4 153 7 164 3.64e-14 70.1
MS.gene061103.t1 AT3G29035 31.481 162 86 8 4 150 24 175 9.19e-14 69.3
MS.gene061103.t1 AT5G04410 30.380 158 86 6 4 146 9 157 1.27e-13 69.3
MS.gene061103.t1 AT3G18400 32.692 156 84 9 4 147 5 151 1.36e-13 68.6
MS.gene061103.t1 AT3G15500 31.250 160 80 7 4 146 14 160 1.43e-13 68.6
MS.gene061103.t1 AT1G32510 30.061 163 88 7 3 145 5 161 1.55e-13 68.2
MS.gene061103.t1 AT1G52890 31.250 160 80 7 4 146 14 160 2.73e-13 67.8
MS.gene061103.t1 AT5G46590 32.374 139 80 6 4 135 6 137 2.75e-13 67.4
MS.gene061103.t1 AT4G35580 29.762 168 86 9 1 149 6 160 2.76e-13 68.6
MS.gene061103.t1 AT4G35580 29.762 168 86 9 1 149 6 160 2.84e-13 68.6
MS.gene061103.t1 AT4G35580 29.762 168 86 9 1 149 6 160 2.96e-13 68.6
MS.gene061103.t1 AT5G64530 28.866 194 104 6 4 176 3 183 3.55e-13 65.9
MS.gene061103.t1 AT5G04395 32.886 149 79 6 4 135 28 172 5.08e-13 65.5
MS.gene061103.t1 AT5G61430 29.448 163 91 6 4 151 16 169 5.20e-13 67.4
MS.gene061103.t1 AT5G50820 33.824 136 75 6 4 135 17 141 9.73e-13 64.7
MS.gene061103.t1 AT3G15510 27.950 161 85 5 10 146 23 176 1.06e-12 66.6
MS.gene061103.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.52e-12 66.2
MS.gene061103.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.52e-12 66.2
MS.gene061103.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.52e-12 66.2
MS.gene061103.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.52e-12 66.2
MS.gene061103.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.52e-12 66.2
MS.gene061103.t1 AT5G39820 34.058 138 76 5 2 132 18 147 1.57e-12 65.9
MS.gene061103.t1 AT5G64530 34.848 132 67 6 4 132 3 118 1.93e-12 63.2
MS.gene061103.t1 AT5G07680 29.878 164 89 7 4 151 17 170 3.31e-12 64.7
MS.gene061103.t1 AT5G64060 27.556 225 121 9 4 207 6 209 3.44e-12 65.1
MS.gene061103.t1 AT5G07680 29.878 164 89 7 4 151 3 156 3.54e-12 64.7
MS.gene061103.t1 AT2G46770 27.273 209 113 8 4 182 16 215 4.11e-12 64.7
MS.gene061103.t1 AT3G04060 30.818 159 85 7 4 146 20 169 5.46e-12 64.3
MS.gene061103.t1 AT3G12977 28.000 175 102 7 4 163 18 183 1.27e-11 62.8
MS.gene061103.t1 AT5G18270 32.075 159 83 8 4 146 21 170 1.51e-11 63.2
MS.gene061103.t1 AT5G18270 32.075 159 83 8 4 146 21 170 1.51e-11 63.2

Find 54 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGGTTCTGACCTGATTA+AGG 0.246294 1.4:+19323067 MS.gene061103:CDS
CCTCCTCTGCTCATCAGTTT+TGG 0.253784 1.4:-19323180 None:intergenic
GAAGGAACTCAGCAACTTAA+AGG 0.268437 1.4:+19323612 MS.gene061103:CDS
CCTTGTGTGAGGGAAGAAAA+AGG 0.358153 1.4:-19323138 None:intergenic
GGCTACTCAAGCCACTATTT+AGG 0.370350 1.4:+19323701 MS.gene061103:CDS
CCACCCTAGAGGGATGGATT+TGG 0.381002 1.4:+19323515 MS.gene061103:CDS
GGCATTGTAAGACTGGATTC+TGG 0.399311 1.4:+19323201 MS.gene061103:CDS
GATTTGCTTCCACCTGGTGC+TGG 0.403266 1.4:+19322972 MS.gene061103:CDS
CTCAGCAACTTAAAGGGGCT+GGG 0.408676 1.4:+19323619 MS.gene061103:CDS
ACAGGTTCAGCTCCTTAATC+AGG 0.411998 1.4:-19323079 None:intergenic
AAGGAACTCAGCAACTTAAA+GGG 0.416136 1.4:+19323613 MS.gene061103:CDS
AGGTGATGCATCGCGGTTCA+TGG 0.440949 1.4:+19323680 MS.gene061103:CDS
TCTAGTGATGGTGCTTGTGC+TGG 0.455178 1.4:+19323648 MS.gene061103:CDS
ACTCAGCAACTTAAAGGGGC+TGG 0.463888 1.4:+19323618 MS.gene061103:CDS
GCAATTCAAATGGATCATAC+TGG 0.470518 1.4:-19323103 None:intergenic
TGAGCAAGATGCAATTCAAA+TGG 0.471704 1.4:-19323113 None:intergenic
CAGAGGAGGCATTGTAAGAC+TGG 0.471934 1.4:+19323194 MS.gene061103:CDS
GCTTGTGCTGGTGCTGAGCA+AGG 0.479778 1.4:+19323660 MS.gene061103:CDS
AAAACACGGCAAACAACAAA+AGG 0.482067 1.4:-19323489 None:intergenic
AATATATGTTACCTAAATAG+TGG 0.484280 1.4:-19323712 None:intergenic
CAAATGGATCATACTGGTAC+AGG 0.492656 1.4:-19323097 None:intergenic
GAGTCCAAATCCATCCCTCT+AGG 0.501503 1.4:-19323519 None:intergenic
GAAGATGTTCAGAATTTCCA+TGG 0.508550 1.4:+19323050 MS.gene061103:CDS
TGGAGCTGATGACGTGTTGG+TGG 0.510033 1.4:+19323256 MS.gene061103:CDS
GCTGTCAGAGACATTACTGC+TGG 0.527123 1.4:+19323236 MS.gene061103:CDS
TCTGATGACAAGGCGAATGA+AGG 0.528665 1.4:+19323594 MS.gene061103:CDS
GCAATGGATTTGCTTCCACC+TGG 0.532019 1.4:+19322966 None:intergenic
AGAACGCGATCAAAACTAGC+TGG 0.546737 1.4:+19323321 MS.gene061103:CDS
CACTCTTGTTAACAACCCTC+AGG 0.546751 1.4:+19323358 MS.gene061103:CDS
ACCTTCACCTACATCAGATA+AGG 0.551670 1.4:-19323553 None:intergenic
TCAGCAACTTAAAGGGGCTG+GGG 0.554378 1.4:+19323620 MS.gene061103:CDS
TGCTGGAGCTGATGACGTGT+TGG 0.559512 1.4:+19323253 MS.gene061103:CDS
GAAGGGACGAAGCCAGCACC+AGG 0.569334 1.4:-19322984 None:intergenic
CAGTAAAACTCCCTTGTGTG+AGG 0.577220 1.4:-19323149 None:intergenic
GACTGGATTCTGGATGCAGA+AGG 0.580380 1.4:+19323211 MS.gene061103:CDS
CCAAAACTGATGAGCAGAGG+AGG 0.581988 1.4:+19323180 MS.gene061103:CDS
AGTCCAAATCCATCCCTCTA+GGG 0.582948 1.4:-19323518 None:intergenic
TGGCAAGGTAATAGCTAACA+AGG 0.592858 1.4:-19323016 None:intergenic
GCTGGGGCTAGTTCTAGTGA+TGG 0.596249 1.4:+19323636 MS.gene061103:CDS
AGTAAAACTCCCTTGTGTGA+GGG 0.603789 1.4:-19323148 None:intergenic
GTAGGTGAAGGTGATGCTGC+TGG 0.606109 1.4:+19323564 MS.gene061103:CDS
ACTGGATTCTGGATGCAGAA+GGG 0.607334 1.4:+19323212 MS.gene061103:CDS
TTTAGTGCCTTATCTGATGT+AGG 0.610156 1.4:+19323546 MS.gene061103:CDS
CCTTAATCAGGTCAGAACCA+TGG 0.626777 1.4:-19323067 None:intergenic
AGGAACTCAGCAACTTAAAG+GGG 0.629259 1.4:+19323614 MS.gene061103:CDS
TAACAAGGAGTTCATCAGAA+GGG 0.633655 1.4:-19323001 None:intergenic
GGGACGAAGCCAGCACCAGG+TGG 0.645386 1.4:-19322981 None:intergenic
GGAGCTGATGACGTGTTGGT+GGG 0.653652 1.4:+19323257 MS.gene061103:CDS
TGGTGACGACTCTGATGACA+AGG 0.654982 1.4:+19323584 MS.gene061103:CDS
CTGCCAAAACTGATGAGCAG+AGG 0.655541 1.4:+19323177 MS.gene061103:CDS
GCCTTATCTGATGTAGGTGA+AGG 0.657162 1.4:+19323552 MS.gene061103:CDS
CTAACAAGGAGTTCATCAGA+AGG 0.667376 1.4:-19323002 None:intergenic
CCAAATCCATCCCTCTAGGG+TGG 0.667792 1.4:-19323515 None:intergenic
CTGAGCAAGGTGATGCATCG+CGG 0.677590 1.4:+19323673 MS.gene061103:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATAAATAATTGTGC+AGG + chr1.4:19323464-19323483 MS.gene061103:intron 15.0%
!! TCGATGATTAATTAATGTAT+TGG + chr1.4:19323425-19323444 MS.gene061103:intron 20.0%
!! TCTCTCTTCTTTTTCTATAT+AGG + chr1.4:19323287-19323306 MS.gene061103:CDS 25.0%
!!! AACATCTTCATTGTTTTTGT+TGG - chr1.4:19323039-19323058 None:intergenic 25.0%
AAAACACGGCAAACAACAAA+AGG - chr1.4:19323492-19323511 None:intergenic 35.0%
AAGGAACTCAGCAACTTAAA+GGG + chr1.4:19323613-19323632 MS.gene061103:CDS 35.0%
ATCGATTGAATAACGAGCAT+AGG - chr1.4:19323410-19323429 None:intergenic 35.0%
GAAGATGTTCAGAATTTCCA+TGG + chr1.4:19323050-19323069 MS.gene061103:CDS 35.0%
GCAATTCAAATGGATCATAC+TGG - chr1.4:19323106-19323125 None:intergenic 35.0%
TAACAAGGAGTTCATCAGAA+GGG - chr1.4:19323004-19323023 None:intergenic 35.0%
TCGATTGAATAACGAGCATA+GGG - chr1.4:19323409-19323428 None:intergenic 35.0%
TGAGCAAGATGCAATTCAAA+TGG - chr1.4:19323116-19323135 None:intergenic 35.0%
TTTAGTGCCTTATCTGATGT+AGG + chr1.4:19323546-19323565 MS.gene061103:CDS 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr1.4:19323034-19323053 None:intergenic 35.0%
ACCTTCACCTACATCAGATA+AGG - chr1.4:19323556-19323575 None:intergenic 40.0%
AGGAACTCAGCAACTTAAAG+GGG + chr1.4:19323614-19323633 MS.gene061103:CDS 40.0%
AGTAAAACTCCCTTGTGTGA+GGG - chr1.4:19323151-19323170 None:intergenic 40.0%
CAAATGGATCATACTGGTAC+AGG - chr1.4:19323100-19323119 None:intergenic 40.0%
CTAACAAGGAGTTCATCAGA+AGG - chr1.4:19323005-19323024 None:intergenic 40.0%
GAAGGAACTCAGCAACTTAA+AGG + chr1.4:19323612-19323631 MS.gene061103:CDS 40.0%
TGGCAAGGTAATAGCTAACA+AGG - chr1.4:19323019-19323038 None:intergenic 40.0%
TTCCCAAATGACATACCTGA+GGG - chr1.4:19323376-19323395 None:intergenic 40.0%
TTTCCCAAATGACATACCTG+AGG - chr1.4:19323377-19323396 None:intergenic 40.0%
! AACCCTCAGGTATGTCATTT+GGG + chr1.4:19323371-19323390 MS.gene061103:intron 40.0%
! CTTTTTCTTCCCTCACACAA+GGG + chr1.4:19323139-19323158 MS.gene061103:CDS 40.0%
!!! TAGTTTTGATCGCGTTCTGA+GGG - chr1.4:19323319-19323338 None:intergenic 40.0%
ACAGGTTCAGCTCCTTAATC+AGG - chr1.4:19323082-19323101 None:intergenic 45.0%
ACTGGATTCTGGATGCAGAA+GGG + chr1.4:19323212-19323231 MS.gene061103:CDS 45.0%
AGAACGCGATCAAAACTAGC+TGG + chr1.4:19323321-19323340 MS.gene061103:CDS 45.0%
AGTCCAAATCCATCCCTCTA+GGG - chr1.4:19323521-19323540 None:intergenic 45.0%
CAACCCTCAGGTATGTCATT+TGG + chr1.4:19323370-19323389 MS.gene061103:intron 45.0%
CACTCTTGTTAACAACCCTC+AGG + chr1.4:19323358-19323377 MS.gene061103:CDS 45.0%
CAGTAAAACTCCCTTGTGTG+AGG - chr1.4:19323152-19323171 None:intergenic 45.0%
CCTTAATCAGGTCAGAACCA+TGG - chr1.4:19323070-19323089 None:intergenic 45.0%
CCTTGTGTGAGGGAAGAAAA+AGG - chr1.4:19323141-19323160 None:intergenic 45.0%
GCCTTATCTGATGTAGGTGA+AGG + chr1.4:19323552-19323571 MS.gene061103:CDS 45.0%
GGCATTGTAAGACTGGATTC+TGG + chr1.4:19323201-19323220 MS.gene061103:CDS 45.0%
TCTGATGACAAGGCGAATGA+AGG + chr1.4:19323594-19323613 MS.gene061103:CDS 45.0%
! CCTTTTTCTTCCCTCACACA+AGG + chr1.4:19323138-19323157 MS.gene061103:CDS 45.0%
!! AGTTTTGATCGCGTTCTGAG+GGG - chr1.4:19323318-19323337 None:intergenic 45.0%
!! CCATGGTTCTGACCTGATTA+AGG + chr1.4:19323067-19323086 MS.gene061103:CDS 45.0%
!! CTCTAGGGTGGTCAAAAACA+CGG - chr1.4:19323506-19323525 None:intergenic 45.0%
!! GTGTTTTTGACCACCCTAGA+GGG + chr1.4:19323505-19323524 MS.gene061103:CDS 45.0%
!!! CTAGTTTTGATCGCGTTCTG+AGG - chr1.4:19323320-19323339 None:intergenic 45.0%
ACTCAGCAACTTAAAGGGGC+TGG + chr1.4:19323618-19323637 MS.gene061103:CDS 50.0%
CCAAAACTGATGAGCAGAGG+AGG + chr1.4:19323180-19323199 MS.gene061103:CDS 50.0%
CTCAGCAACTTAAAGGGGCT+GGG + chr1.4:19323619-19323638 MS.gene061103:CDS 50.0%
CTGCCAAAACTGATGAGCAG+AGG + chr1.4:19323177-19323196 MS.gene061103:CDS 50.0%
GACTGGATTCTGGATGCAGA+AGG + chr1.4:19323211-19323230 MS.gene061103:CDS 50.0%
GAGTCCAAATCCATCCCTCT+AGG - chr1.4:19323522-19323541 None:intergenic 50.0%
GCTGTCAGAGACATTACTGC+TGG + chr1.4:19323236-19323255 MS.gene061103:CDS 50.0%
TCAGCAACTTAAAGGGGCTG+GGG + chr1.4:19323620-19323639 MS.gene061103:CDS 50.0%
! CCTCCTCTGCTCATCAGTTT+TGG - chr1.4:19323183-19323202 None:intergenic 50.0%
! TCTAGTGATGGTGCTTGTGC+TGG + chr1.4:19323648-19323667 MS.gene061103:CDS 50.0%
! TGGTGACGACTCTGATGACA+AGG + chr1.4:19323584-19323603 MS.gene061103:CDS 50.0%
! TTTTGACCACCCTAGAGGGA+TGG + chr1.4:19323509-19323528 MS.gene061103:CDS 50.0%
!! CAGAGGAGGCATTGTAAGAC+TGG + chr1.4:19323194-19323213 MS.gene061103:CDS 50.0%
!! CGTGTTTTTGACCACCCTAG+AGG + chr1.4:19323504-19323523 MS.gene061103:CDS 50.0%
AGGTGATGCATCGCGGTTCA+TGG + chr1.4:19323680-19323699 MS.gene061103:CDS 55.0%
CTGAGCAAGGTGATGCATCG+CGG + chr1.4:19323673-19323692 MS.gene061103:CDS 55.0%
GTAGGTGAAGGTGATGCTGC+TGG + chr1.4:19323564-19323583 MS.gene061103:CDS 55.0%
! CCAAATCCATCCCTCTAGGG+TGG - chr1.4:19323518-19323537 None:intergenic 55.0%
! CCACCCTAGAGGGATGGATT+TGG + chr1.4:19323515-19323534 MS.gene061103:CDS 55.0%
! GATTTGCTTCCACCTGGTGC+TGG + chr1.4:19322972-19322991 MS.gene061103:CDS 55.0%
! GGAGCTGATGACGTGTTGGT+GGG + chr1.4:19323257-19323276 MS.gene061103:CDS 55.0%
! TGCTGGAGCTGATGACGTGT+TGG + chr1.4:19323253-19323272 MS.gene061103:CDS 55.0%
! TGGAGCTGATGACGTGTTGG+TGG + chr1.4:19323256-19323275 MS.gene061103:CDS 55.0%
!! GCTGGGGCTAGTTCTAGTGA+TGG + chr1.4:19323636-19323655 MS.gene061103:CDS 55.0%
! GCTTGTGCTGGTGCTGAGCA+AGG + chr1.4:19323660-19323679 MS.gene061103:CDS 60.0%
GAAGGGACGAAGCCAGCACC+AGG - chr1.4:19322987-19323006 None:intergenic 65.0%
GGGACGAAGCCAGCACCAGG+TGG - chr1.4:19322984-19323003 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 19322969 19323722 19322969 ID=MS.gene061103
chr1.4 mRNA 19322969 19323722 19322969 ID=MS.gene061103.t1;Parent=MS.gene061103
chr1.4 exon 19322969 19323379 19322969 ID=MS.gene061103.t1.exon1;Parent=MS.gene061103.t1
chr1.4 CDS 19322969 19323379 19322969 ID=cds.MS.gene061103.t1;Parent=MS.gene061103.t1
chr1.4 exon 19323486 19323722 19323486 ID=MS.gene061103.t1.exon2;Parent=MS.gene061103.t1
chr1.4 CDS 19323486 19323722 19323486 ID=cds.MS.gene061103.t1;Parent=MS.gene061103.t1
Gene Sequence

>MS.gene061103

ATGGATTTGCTTCCACCTGGTGCTGGCTTCGTCCCTTCTGATGAACTCCTTGTTAGCTATTACCTTGCCAACAAAAACAATGAAGATGTTCAGAATTTCCATGGTTCTGACCTGATTAAGGAGCTGAACCTGTACCAGTATGATCCATTTGAATTGCATCTTGCTCAATCCTTTTTCTTCCCTCACACAAGGGAGTTTTACTGCTTCACTGCCAAAACTGATGAGCAGAGGAGGCATTGTAAGACTGGATTCTGGATGCAGAAGGGAGCTGTCAGAGACATTACTGCTGGAGCTGATGACGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTCTATATAGGAAATTCCCCTCAGAACGCGATCAAAACTAGCTGGACTATGTACGAGTACACTCTTGTTAACAACCCTCAGGTATGTCATTTGGGAAAACTAACTTTCCCTATGCTCGTTATTCAATCGATGATTAATTAATGTATTGGTAATGACTAACTATTTTTTTATATAAATAATTGTGCAGGATCCTTTTGTTGTTTGCCGTGTTTTTGACCACCCTAGAGGGATGGATTTGGACTCTGAATTTAGTGCCTTATCTGATGTAGGTGAAGGTGATGCTGCTGGTGACGACTCTGATGACAAGGCGAATGAAGGAACTCAGCAACTTAAAGGGGCTGGGGCTAGTTCTAGTGATGGTGCTTGTGCTGGTGCTGAGCAAGGTGATGCATCGCGGTTCATGGCTACTCAAGCCACTATTTAG
Protein sequence

>MS.gene061103.t1

MDLLPPGAGFVPSDELLVSYYLANKNNEDVQNFHGSDLIKELNLYQYDPFELHLAQSFFFPHTREFYCFTAKTDEQRRHCKTGFWMQKGAVRDITAGADDVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTLVNNPQDPFVVCRVFDHPRGMDLDSEFSALSDVGEGDAAGDDSDDKANEGTQQLKGAGASSSDGACAGAEQGDASRFMATQATI