AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061104

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061104.t1 MTR_1g035010 97.480 873 22 0 1 873 103 975 0.0 1766
MS.gene061104.t1 MTR_7g110320 32.517 572 342 12 332 873 415 972 2.60e-80 280
MS.gene061104.t1 MTR_7g110320 73.404 94 25 0 1 94 144 237 1.51e-37 152
MS.gene061104.t1 MTR_1g086250 32.030 537 332 10 362 873 254 782 1.65e-77 269
MS.gene061104.t1 MTR_1g086250 32.030 537 332 10 362 873 446 974 1.02e-75 267
MS.gene061104.t1 MTR_1g086250 75.862 87 20 1 1 87 146 231 2.08e-35 145
MS.gene061104.t1 MTR_2g046550 30.686 554 320 17 364 873 228 761 3.91e-72 253
MS.gene061104.t1 MTR_2g046550 30.686 554 320 17 364 873 463 996 1.40e-70 253
MS.gene061104.t1 MTR_2g046550 64.486 107 38 0 1 107 138 244 1.59e-38 155
MS.gene061104.t1 MTR_7g110320 34.607 445 263 9 332 756 415 851 1.97e-67 241
MS.gene061104.t1 MTR_7g110320 73.404 94 25 0 1 94 144 237 9.05e-38 152
MS.gene061104.t1 MTR_8g096780 67.901 81 26 0 2 82 99 179 3.66e-32 130
MS.gene061104.t1 MTR_8g463140 67.059 85 28 0 2 86 65 149 2.47e-31 121
MS.gene061104.t1 MTR_2g014200 72.000 75 21 0 2 76 64 138 1.29e-30 118
MS.gene061104.t1 MTR_4g088555 69.231 78 24 0 2 79 63 140 4.96e-30 116
MS.gene061104.t1 MTR_8g005960 71.053 76 22 0 2 77 187 262 9.76e-30 121
MS.gene061104.t1 MTR_2g078770 62.069 87 33 0 1 87 57 143 1.10e-29 116
MS.gene061104.t1 MTR_2g461920 71.053 76 22 0 2 77 171 246 2.40e-29 124
MS.gene061104.t1 MTR_1g053715 63.636 88 32 0 2 89 74 161 3.02e-29 120
MS.gene061104.t1 MTR_3g099080 45.985 137 68 2 2 132 98 234 3.47e-29 120
MS.gene061104.t1 MTR_5g046670 67.089 79 26 0 1 79 243 321 7.41e-29 122
MS.gene061104.t1 MTR_7g028740 64.103 78 28 0 1 78 76 153 8.79e-29 119
MS.gene061104.t1 MTR_7g444860 66.667 81 27 0 2 82 149 229 9.54e-29 118
MS.gene061104.t1 MTR_7g092930 63.750 80 29 0 2 81 68 147 8.60e-28 115
MS.gene061104.t1 MTR_4g109770 68.421 76 24 0 2 77 123 198 1.28e-27 117
MS.gene061104.t1 MTR_3g085180 58.824 85 35 0 2 86 165 249 4.17e-27 115
MS.gene061104.t1 MTR_8g080690 60.256 78 31 0 2 79 151 228 2.57e-25 109
MS.gene061104.t1 MTR_2g020620 30.000 250 160 4 347 589 259 500 5.94e-25 111
MS.gene061104.t1 MTR_2g020620 48.235 85 43 1 11 95 99 182 2.20e-17 87.4
MS.gene061104.t1 MTR_2g020620 30.000 250 160 4 347 589 155 396 1.09e-24 110
MS.gene061104.t1 MTR_2g020620 30.603 232 151 4 366 589 3 232 2.39e-24 108
MS.gene061104.t1 MTR_8g080680 56.757 74 32 0 2 75 132 205 3.98e-21 97.1
MS.gene061104.t1 MTR_8g080670 56.757 74 32 0 1 74 161 234 1.35e-20 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061104.t1 AT1G20980 51.198 918 368 21 1 870 119 1004 0.0 824
MS.gene061104.t1 AT1G76580 49.783 920 367 20 2 870 114 989 0.0 818
MS.gene061104.t1 AT1G76580 49.097 609 231 15 2 560 114 693 4.41e-169 508
MS.gene061104.t1 AT1G76580 49.094 607 230 15 2 558 114 691 1.01e-167 504
MS.gene061104.t1 AT2G47070 32.129 526 310 12 364 873 229 723 3.37e-74 258
MS.gene061104.t1 AT2G47070 58.025 81 32 1 27 107 2 80 1.90e-20 97.4
MS.gene061104.t1 AT2G47070 32.129 526 310 12 364 873 358 852 1.79e-73 259
MS.gene061104.t1 AT2G47070 62.617 107 38 1 1 107 105 209 3.63e-35 144
MS.gene061104.t1 AT3G60030 33.835 532 300 16 363 873 398 898 2.45e-73 259
MS.gene061104.t1 AT3G60030 66.038 106 35 1 2 107 127 231 1.17e-36 149
MS.gene061104.t1 AT1G53160 65.116 86 30 0 1 86 53 138 4.60e-31 120
MS.gene061104.t1 AT1G53160 65.116 86 30 0 1 86 53 138 6.89e-31 120
MS.gene061104.t1 AT1G53160 65.116 86 30 0 1 86 53 138 6.89e-31 120
MS.gene061104.t1 AT2G33810 65.823 79 27 0 1 79 53 131 3.17e-30 116
MS.gene061104.t1 AT3G15270 64.286 84 30 0 1 84 62 145 3.41e-30 118
MS.gene061104.t1 AT5G50670 60.976 82 32 0 1 82 100 181 1.71e-29 121
MS.gene061104.t1 AT5G50670 60.976 82 32 0 1 82 100 181 1.71e-29 121
MS.gene061104.t1 AT5G50570 60.976 82 32 0 1 82 100 181 1.71e-29 121
MS.gene061104.t1 AT5G50570 60.976 82 32 0 1 82 100 181 1.71e-29 121
MS.gene061104.t1 AT1G69170 70.667 75 22 0 1 75 123 197 1.97e-29 122
MS.gene061104.t1 AT1G02065 71.622 74 21 0 2 75 188 261 2.57e-28 117
MS.gene061104.t1 AT5G18830 30.837 227 153 2 367 589 320 546 2.83e-28 122
MS.gene061104.t1 AT5G18830 48.810 84 43 0 2 85 138 221 1.04e-19 95.1
MS.gene061104.t1 AT5G18830 30.837 227 153 2 367 589 320 546 3.18e-28 122
MS.gene061104.t1 AT5G18830 48.810 84 43 0 2 85 138 221 1.10e-19 95.1
MS.gene061104.t1 AT5G18830 30.837 227 153 2 367 589 320 546 3.41e-28 122
MS.gene061104.t1 AT5G18830 48.810 84 43 0 2 85 138 221 1.14e-19 95.1
MS.gene061104.t1 AT1G27370 58.427 89 30 1 2 90 176 257 7.87e-27 113
MS.gene061104.t1 AT5G43270 51.786 112 47 2 2 113 169 273 1.07e-26 114
MS.gene061104.t1 AT5G43270 51.786 112 47 2 2 113 169 273 1.07e-26 114
MS.gene061104.t1 AT5G43270 51.786 112 47 2 2 113 169 273 1.07e-26 114
MS.gene061104.t1 AT1G27370 58.427 89 30 1 2 90 176 257 1.42e-26 113
MS.gene061104.t1 AT1G27370 58.427 89 30 1 2 90 176 257 1.42e-26 113
MS.gene061104.t1 AT1G27370 58.427 89 30 1 2 90 176 257 1.42e-26 113
MS.gene061104.t1 AT1G27370 58.427 89 30 1 2 90 176 257 1.42e-26 113
MS.gene061104.t1 AT1G27370 58.427 89 30 1 2 90 176 257 1.42e-26 113
MS.gene061104.t1 AT1G27370 58.427 89 30 1 2 90 176 257 1.42e-26 113
MS.gene061104.t1 AT3G57920 66.234 77 26 0 2 78 59 135 2.35e-26 112
MS.gene061104.t1 AT2G42200 62.195 82 31 0 2 83 74 155 2.92e-26 112
MS.gene061104.t1 AT1G27360 64.474 76 27 0 2 77 175 250 1.19e-25 110
MS.gene061104.t1 AT1G27360 64.474 76 27 0 2 77 175 250 1.19e-25 110
MS.gene061104.t1 AT1G27360 64.474 76 27 0 2 77 175 250 1.19e-25 110
MS.gene061104.t1 AT1G27360 64.474 76 27 0 2 77 175 250 1.19e-25 110
MS.gene061104.t1 AT1G02065 61.404 57 20 1 2 56 188 244 4.24e-15 76.6

Find 217 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGCATGAACATAATTT+TGG 0.128013 1.4:+19355262 MS.gene061104:CDS
ATCCCTCTTGATCTCTTTAA+AGG 0.178781 1.4:+19353601 MS.gene061104:CDS
GAATCAGGTTGCTGCTAATT+TGG 0.209506 1.4:+19351981 MS.gene061104:CDS
ATAACTCAGATTCTGATTTC+TGG 0.211467 1.4:+19354319 MS.gene061104:CDS
ACCTGTGTTCGCAGCGTTCC+TGG 0.222112 1.4:-19353933 None:intergenic
GGAAGATTTCTTGTTTATTC+TGG 0.246345 1.4:+19354348 MS.gene061104:CDS
CGGTGGAAATACATATTTCT+TGG 0.254936 1.4:-19355620 None:intergenic
AAAGCTTCTAAGGCTTTGTT+AGG 0.256564 1.4:+19351799 MS.gene061104:CDS
CCTGTTGTGCAGATGAATTT+TGG 0.270833 1.4:+19353478 MS.gene061104:CDS
TTGTCTATCGGAACGTTTAC+GGG 0.284257 1.4:-19356508 None:intergenic
GATGCATAACCAGCTTTAAA+TGG 0.312390 1.4:-19353673 None:intergenic
AGGTTCGCCGCCGTTGAATC+AGG 0.312918 1.4:+19351966 MS.gene061104:CDS
CCAAAATTCATCTGCACAAC+AGG 0.314041 1.4:-19353478 None:intergenic
TTTGTCTATCGGAACGTTTA+CGG 0.314407 1.4:-19356509 None:intergenic
TGTACAAGCTGCTCTTTATC+TGG 0.315396 1.4:-19353010 None:intergenic
TAGGCTCAGTTTCTCCCTTC+AGG 0.321487 1.4:+19356784 MS.gene061104:intron
AATACATCTCCTAGTGTTCT+AGG 0.322030 1.4:+19354959 MS.gene061104:CDS
GTTTGTGAACAGGTTGAAAA+TGG 0.322272 1.4:+19355127 MS.gene061104:intron
TTCAATGTCTTCTGCTGCTT+GGG 0.324534 1.4:+19354164 MS.gene061104:CDS
CATGTTGGTCAAAACCCTTC+TGG 0.329211 1.4:+19355438 MS.gene061104:CDS
AGCTAGCATCGAATGAATAA+AGG 0.329929 1.4:-19356709 None:intergenic
CTGAGTATCTGAATTCAAAC+TGG 0.331636 1.4:-19353719 None:intergenic
CCATCAACACCTGCTCAAAA+TGG 0.333813 1.4:+19353223 MS.gene061104:CDS
ATTTGGAGGCCATGCAAATA+AGG 0.340733 1.4:+19353549 MS.gene061104:CDS
TAAAGCTGGTTATGCATCTT+CGG 0.346795 1.4:+19353678 MS.gene061104:CDS
AAAGCTGGTTATGCATCTTC+GGG 0.352663 1.4:+19353679 MS.gene061104:CDS
AACTTCTGCAATTGCACACT+TGG 0.359955 1.4:-19356640 None:intergenic
CTTCAATGTCTTCTGCTGCT+TGG 0.362113 1.4:+19354163 MS.gene061104:CDS
TATACATCATCAGAAGTTAT+AGG 0.371060 1.4:+19354878 MS.gene061104:CDS
GATTCTGATTTCTGGAGAAA+TGG 0.374701 1.4:+19354327 MS.gene061104:CDS
AGCTCATAGTAAAGCTTCTA+AGG 0.376735 1.4:+19351789 MS.gene061104:CDS
CAAGAAAATCCTTAGTTAAC+GGG 0.380419 1.4:-19353183 None:intergenic
TGCAATTGCACACTTGGAAC+AGG 0.381293 1.4:-19356634 None:intergenic
TCCTTAGTTAACGGGGCAGG+GGG 0.382520 1.4:-19353175 None:intergenic
GGTCTGCAAGGTGGTATTAG+AGG 0.383774 1.4:+19353499 MS.gene061104:CDS
CGGTATTACTCCCTTGCATT+TGG 0.384111 1.4:+19355660 MS.gene061104:CDS
TGTAGATTGGGTTGAAGTGC+TGG 0.386202 1.4:+19356403 MS.gene061104:intron
AGGAGGGTGAAGTTTGCATT+TGG 0.388943 1.4:-19353120 None:intergenic
TGAACCGGAAAATCTTCTTT+TGG 0.396112 1.4:-19356667 None:intergenic
TAGGAAAGTTTGAGGAAAGA+AGG 0.403082 1.4:+19352978 MS.gene061104:intron
GAAGGAGAAGGGTTGTCAAC+AGG 0.403420 1.4:+19355484 MS.gene061104:CDS
TCCCTCTTGATCTCTTTAAA+GGG 0.403698 1.4:+19353602 MS.gene061104:CDS
TGGCAATCTGAATCATCATT+TGG 0.407162 1.4:-19353310 None:intergenic
GGCTAGTTTCCTTATTTGCA+TGG 0.408999 1.4:-19353558 None:intergenic
ATCCTTAGTTAACGGGGCAG+GGG 0.412793 1.4:-19353176 None:intergenic
CTTAGTTAACGGGGCAGGGG+GGG 0.416027 1.4:-19353173 None:intergenic
CCGCCAGGGCCCTCGAGATT+CGG 0.416230 1.4:-19355640 None:intergenic
GGAGACTTCTATTTCATTGA+AGG 0.416715 1.4:+19354717 MS.gene061104:CDS
GTGTCTCCTTTGGCTATTGT+CGG 0.420233 1.4:+19354688 MS.gene061104:CDS
CTGCTCAAAATGGCGGCAAC+GGG 0.422761 1.4:+19353233 MS.gene061104:CDS
CGCGAAGATGGCAATTTCGA+TGG 0.423095 1.4:-19353394 None:intergenic
GAAACCCTTGTGGATGAAAA+CGG 0.423968 1.4:+19356426 MS.gene061104:CDS
CAGTAAGATCAGCGGGTAAA+GGG 0.424392 1.4:-19353048 None:intergenic
GGATTATCATCGACGTCATA+AGG 0.425815 1.4:+19351759 MS.gene061104:CDS
ATTAGCTCAATTCCCGGTGA+TGG 0.428300 1.4:-19356573 None:intergenic
TTAACCAAGTCAAACGAGTT+GGG 0.434205 1.4:+19356607 MS.gene061104:CDS
CTCTTTAACAAATGATCTAC+AGG 0.434988 1.4:+19355717 MS.gene061104:CDS
ATTAGAGGTCTCAATTCTAA+TGG 0.436493 1.4:+19353514 MS.gene061104:CDS
CTCCTTGCAAATGGATGCAT+TGG 0.437114 1.4:-19355182 None:intergenic
CAAAGCCTCATCCCTTGACT+TGG 0.437901 1.4:-19355290 None:intergenic
TTCGCAGCGTTCCTGGGAAA+TGG 0.438881 1.4:-19353926 None:intergenic
TGATCTTACTGCAAAATTGC+TGG 0.439137 1.4:+19353060 MS.gene061104:CDS
CGGTCTCAACTCCTTGCAAA+TGG 0.440421 1.4:-19355191 None:intergenic
ATGTTCATGCTCCTCTGAAA+TGG 0.441547 1.4:-19355254 None:intergenic
AAATCCTTAGTTAACGGGGC+AGG 0.442282 1.4:-19353178 None:intergenic
GTTGATATCAGTGTCTCCTT+TGG 0.442818 1.4:+19354678 MS.gene061104:CDS
CCGGATGAAGTGGCGGTTGG+AGG 0.443148 1.4:+19351946 MS.gene061104:CDS
TCACTGCTCTATTTAGAAGT+TGG 0.443446 1.4:-19355531 None:intergenic
GTGAAGCCAGCTCCGTGAAC+CGG 0.444837 1.4:-19356682 None:intergenic
TTCCAGATTATTCGCTCGAC+AGG 0.447389 1.4:+19355374 MS.gene061104:CDS
TTGATCATCGCGATGATGAT+AGG 0.450695 1.4:-19353140 None:intergenic
CCTCCAACCGCCACTTCATC+CGG 0.453273 1.4:-19351946 None:intergenic
TCATCAGAAGTTATAGGATC+AGG 0.457883 1.4:+19354884 MS.gene061104:CDS
GCAGTAAGATCAGCGGGTAA+AGG 0.460954 1.4:-19353049 None:intergenic
CCTGTGTTCGCAGCGTTCCT+GGG 0.462026 1.4:-19353932 None:intergenic
GGAGACTTGCTGGTCATAAT+CGG 0.463432 1.4:+19351905 MS.gene061104:CDS
GGTTCACGGAGCTGGCTTCA+CGG 0.463735 1.4:+19356684 MS.gene061104:CDS
AATCCTTAGTTAACGGGGCA+GGG 0.464494 1.4:-19353177 None:intergenic
ACAGGTTGAAAATGGTTTCA+AGG 0.467248 1.4:+19355135 MS.gene061104:intron
AGTTGTAGACGGAGACTTGC+TGG 0.469042 1.4:+19351895 MS.gene061104:CDS
GCAAGAAAATCCTTAGTTAA+CGG 0.472350 1.4:-19353184 None:intergenic
GATGCATTGGCTATTATCAC+TGG 0.472801 1.4:-19355169 None:intergenic
AGCTTGGTTGGCTGTTTCAA+AGG 0.474571 1.4:+19355326 MS.gene061104:CDS
TTTGGCTATTGTCGGTGGAC+AGG 0.474909 1.4:+19354696 MS.gene061104:CDS
AGAGTGATTATTTCTCATCA+TGG 0.481408 1.4:-19356469 None:intergenic
ACATTGAAGCATAAATTGAT+AGG 0.482024 1.4:-19354149 None:intergenic
CCACCGAATCTCGAGGGCCC+TGG 0.482418 1.4:+19355637 MS.gene061104:CDS
AACTTCACTTCTTTGTCTAT+CGG 0.482737 1.4:-19356520 None:intergenic
TAATCACTCTTATAATATGT+TGG 0.482765 1.4:+19356482 MS.gene061104:CDS
GCTAGCATCGAATGAATAAA+GGG 0.487739 1.4:-19356708 None:intergenic
CAAAGTGTACCATTTAAAGC+TGG 0.488893 1.4:+19353664 MS.gene061104:CDS
CAGGTTGAAAATGGTTTCAA+GGG 0.489945 1.4:+19355136 MS.gene061104:intron
CCGTTGGTGGAGTTTGATGA+AGG 0.489954 1.4:+19351865 MS.gene061104:CDS
CCTGCTCAAAATGGCGGCAA+CGG 0.490644 1.4:+19353232 MS.gene061104:CDS
GCTATTGCTGATGGTTCTCA+AGG 0.494096 1.4:+19352024 MS.gene061104:CDS
TAGTAGTACAACTATGACTT+TGG 0.494147 1.4:-19353579 None:intergenic
AAATGATGATTCAGATTGCC+AGG 0.494257 1.4:+19353312 MS.gene061104:CDS
AACCTGTCGAGCGAATAATC+TGG 0.495792 1.4:-19355376 None:intergenic
CAGTTTGAATTCAGATACTC+AGG 0.496563 1.4:+19353720 MS.gene061104:CDS
ATTTAACTCGAGCATCCTCC+TGG 0.496630 1.4:-19353330 None:intergenic
TTGTTGACTGCTATTGCTGA+TGG 0.498169 1.4:+19352015 MS.gene061104:CDS
TGCAAGGGAGTAATACCGCC+AGG 0.498402 1.4:-19355655 None:intergenic
ATCAGTACTAACTTTGTGCC+AGG 0.499084 1.4:-19354757 None:intergenic
CCTTAGTTAACGGGGCAGGG+GGG 0.499978 1.4:-19353174 None:intergenic
GTTATAGGATCAGGAGATCC+TGG 0.500739 1.4:+19354893 MS.gene061104:CDS
GATAAACACTTCGAAGGAGA+AGG 0.501550 1.4:+19355472 MS.gene061104:CDS
GGAAGAAACCTCTCTGCTCC+TGG 0.503311 1.4:+19354739 MS.gene061104:CDS
CAAAACCCTTCTGGATATGC+TGG 0.504184 1.4:+19355447 MS.gene061104:CDS
AAACCCTTGTGGATGAAAAC+GGG 0.509681 1.4:+19356427 MS.gene061104:CDS
TGGAGTTTGATGAAGGGAAA+CGG 0.512727 1.4:+19351872 MS.gene061104:CDS
GCTTGGTTGGCTGTTTCAAA+GGG 0.514045 1.4:+19355327 MS.gene061104:CDS
TTCTACACGACCATCAGACT+TGG 0.514057 1.4:+19354098 MS.gene061104:CDS
GTATTCCAACAGGATCGTAC+TGG 0.515714 1.4:+19353867 MS.gene061104:intron
GACGGCGACCTTTCATCCAC+AGG 0.515983 1.4:-19353445 None:intergenic
AGCAGGTGTTGATGGAGTTG+TGG 0.516270 1.4:-19353215 None:intergenic
TGAGATAGAGCACCCATCAC+CGG 0.517584 1.4:+19356560 MS.gene061104:CDS
ATTATTTCTCATCATGGCAT+AGG 0.518702 1.4:-19356463 None:intergenic
GTTGGCTGTTTCAAAGGGAA+AGG 0.520420 1.4:+19355332 MS.gene061104:CDS
GCGAAGATGGCAATTTCGAT+GGG 0.523216 1.4:-19353393 None:intergenic
ATATTGTTTAGGAAAGTTTG+AGG 0.524188 1.4:+19352970 MS.gene061104:intron
AATTGATAGGACAACACAGC+CGG 0.530262 1.4:-19354136 None:intergenic
GCTCAGTTTCTCCCTTCAGG+TGG 0.530619 1.4:+19356787 MS.gene061104:CDS
AGCATCTACAACGGATTCTG+AGG 0.530622 1.4:+19355684 MS.gene061104:CDS
AGTCCCCAACTCGTTTGACT+TGG 0.531710 1.4:-19356611 None:intergenic
GAAAACGCAGCCGGATGAAG+TGG 0.533996 1.4:+19351936 MS.gene061104:CDS
AAGCTTCTAAGGCTTTGTTA+GGG 0.535780 1.4:+19351800 MS.gene061104:CDS
CATATGATCTGCACTACTTG+TGG 0.536193 1.4:-19353257 None:intergenic
CAGCCGGATGAAGTGGCGGT+TGG 0.536524 1.4:+19351943 MS.gene061104:CDS
TCTAGGTCGCTGTTTCATTG+AGG 0.538184 1.4:+19354976 MS.gene061104:CDS
AGCTTGTACAGATTCTGAAT+AGG 0.538634 1.4:+19353023 MS.gene061104:CDS
GCGTCGGAGGAAAACGCAGC+CGG 0.543520 1.4:+19351927 MS.gene061104:CDS
GAGATAGAGCACCCATCACC+GGG 0.544324 1.4:+19356561 MS.gene061104:CDS
TTAGCTCAATTCCCGGTGAT+GGG 0.545019 1.4:-19356572 None:intergenic
ACTGCAAAATTGCTGGATGT+TGG 0.546561 1.4:+19353067 MS.gene061104:CDS
GATACGCATGTGCAAACCAT+GGG 0.547058 1.4:+19354636 MS.gene061104:CDS
GTGTAGTAGGTTTCATCCGT+TGG 0.548903 1.4:+19351849 MS.gene061104:CDS
CTGGTCATAATCGGCGTCGG+AGG 0.551550 1.4:+19351914 MS.gene061104:CDS
ATCTCATCATAGACCATACC+AGG 0.551607 1.4:-19354911 None:intergenic
ATTAACCAAGTCAAACGAGT+TGG 0.553160 1.4:+19356606 MS.gene061104:CDS
GTAGTAATCCTGTGGATGAA+AGG 0.553754 1.4:+19353437 MS.gene061104:CDS
AAAGCCTCATCCCTTGACTT+GGG 0.557399 1.4:-19355289 None:intergenic
GACCCTTTAAAGAGATCAAG+AGG 0.558852 1.4:-19353604 None:intergenic
CAGACTTGGAGAGTTACATA+AGG 0.560965 1.4:+19354112 MS.gene061104:CDS
GGAGACCTCCACGTTCCCCA+TGG 0.566104 1.4:-19354652 None:intergenic
CCCAGGAACGCTGCGAACAC+AGG 0.566597 1.4:+19353932 MS.gene061104:CDS
TCTCCTTTGGCTATTGTCGG+TGG 0.567245 1.4:+19354691 MS.gene061104:CDS
TTGGAGAGTTACATAAGGCC+CGG 0.568740 1.4:+19354117 MS.gene061104:CDS
AGCGTTCCTGGGAAATGGCT+AGG 0.570204 1.4:-19353921 None:intergenic
TGTAGATGCTGCCAAATGCA+AGG 0.571013 1.4:-19355671 None:intergenic
GAGACTTCTATTTCATTGAA+GGG 0.571706 1.4:+19354718 MS.gene061104:CDS
GGAGACACTGATATCAACTC+TGG 0.573695 1.4:-19354673 None:intergenic
AGGGTTGTCAACAGGGTCAG+TGG 0.575519 1.4:+19355492 MS.gene061104:CDS
GAGGCCCAAGTCAAGGGATG+AGG 0.576270 1.4:+19355285 MS.gene061104:CDS
ATTGATAGGACAACACAGCC+GGG 0.579359 1.4:-19354135 None:intergenic
ATAAACACTTCGAAGGAGAA+GGG 0.579651 1.4:+19355473 MS.gene061104:CDS
CGTTGGTGGAGTTTGATGAA+GGG 0.580076 1.4:+19351866 MS.gene061104:CDS
CAGTTAGCATCACACAAAGA+TGG 0.584117 1.4:+19354375 MS.gene061104:CDS
ATCAACCAGCATATCCAGAA+GGG 0.585277 1.4:-19355452 None:intergenic
AAGGAGAAGGGTTGTCAACA+GGG 0.587471 1.4:+19355485 MS.gene061104:CDS
CCAGGGCCCTCGAGATTCGG+TGG 0.587945 1.4:-19355637 None:intergenic
ATGTAACTCTCCAAGTCTGA+TGG 0.588830 1.4:-19354108 None:intergenic
TAGTAGGTTTCATCCGTTGG+TGG 0.589116 1.4:+19351852 MS.gene061104:CDS
TATTCCAACAGGATCGTACT+GGG 0.590411 1.4:+19353868 MS.gene061104:intron
CCTTCATCAAACTCCACCAA+CGG 0.593427 1.4:-19351865 None:intergenic
TGTTAGGGAATCAAATGCAA+CGG 0.593606 1.4:+19351815 MS.gene061104:CDS
CTCAGTTTCTCCCTTCAGGT+GGG 0.594092 1.4:+19356788 MS.gene061104:CDS
TATCAACCAGCATATCCAGA+AGG 0.595870 1.4:-19355453 None:intergenic
CCGAATCTCGAGGGCCCTGG+CGG 0.595957 1.4:+19355640 MS.gene061104:CDS
AAGCATCCTAGCCATTTCCC+AGG 0.599845 1.4:+19353915 MS.gene061104:CDS
GAAAAGAAAGTGCACAAGCA+TGG 0.600104 1.4:+19355552 MS.gene061104:CDS
ATCATCGCGATGATGATAGG+AGG 0.601669 1.4:-19353137 None:intergenic
AGCCAATGCATCCATTTGCA+AGG 0.602317 1.4:+19355180 MS.gene061104:CDS
AGAAGATCTATCAAAAGCGA+AGG 0.602873 1.4:+19351738 MS.gene061104:CDS
CAGTTATCAACTTGACACAT+CGG 0.602997 1.4:-19351712 None:intergenic
AACGCAGCCGGATGAAGTGG+CGG 0.604112 1.4:+19351939 MS.gene061104:CDS
TAACCAAGTCAAACGAGTTG+GGG 0.607095 1.4:+19356608 MS.gene061104:CDS
GTAGATTGGGTTGAAGTGCT+GGG 0.609912 1.4:+19356404 MS.gene061104:intron
CATATGAGAGAAAGAAGCAG+TGG 0.610257 1.4:+19353274 MS.gene061104:CDS
AAGGGAAACGGAGTTGTAGA+CGG 0.611269 1.4:+19351884 MS.gene061104:CDS
CTGGTTGATAAACACTTCGA+AGG 0.611547 1.4:+19355466 MS.gene061104:CDS
AAACAGCGACCTAGAACACT+AGG 0.611826 1.4:-19354968 None:intergenic
ATCGGAAAGTAGTAATCCTG+TGG 0.613254 1.4:+19353429 MS.gene061104:CDS
TTAGCAGCAACCTGATTCAA+CGG 0.616434 1.4:-19351976 None:intergenic
GAATTAAAGAATCAACACGT+TGG 0.617872 1.4:-19354296 None:intergenic
TCGTCAAATTCAGACTCAAG+CGG 0.618525 1.4:-19355211 None:intergenic
GGATACGCATGTGCAAACCA+TGG 0.620975 1.4:+19354635 MS.gene061104:CDS
TATGATGAGATAAAATTGAG+TGG 0.621764 1.4:+19354923 MS.gene061104:CDS
CTCATCATGGCATAGGCATG+TGG 0.622626 1.4:-19356456 None:intergenic
TGTATTTCCACCGAATCTCG+AGG 0.624810 1.4:+19355630 MS.gene061104:CDS
TGTGCAAACCATGGGGAACG+TGG 0.625779 1.4:+19354644 MS.gene061104:CDS
GTAGATGCTGCCAAATGCAA+GGG 0.626471 1.4:-19355670 None:intergenic
AAATTCATCTGCACAACAGG+AGG 0.631154 1.4:-19353475 None:intergenic
AGGATCAGGAGATCCTGGTA+TGG 0.632079 1.4:+19354898 MS.gene061104:CDS
GATGTGTGATGCCATTTCAG+AGG 0.633081 1.4:+19355243 MS.gene061104:CDS
GCATTTGGCAGCATCTACAA+CGG 0.637611 1.4:+19355675 MS.gene061104:CDS
TGAGTATCTGAATTCAAACT+GGG 0.640355 1.4:-19353718 None:intergenic
TTGCTGGTCATAATCGGCGT+CGG 0.649273 1.4:+19351911 MS.gene061104:CDS
GTATTTCCACCGAATCTCGA+GGG 0.650887 1.4:+19355631 MS.gene061104:CDS
TCATCGCGATGATGATAGGA+GGG 0.651428 1.4:-19353136 None:intergenic
ACAACAGGAGGAGATGAAGA+CGG 0.658031 1.4:-19353463 None:intergenic
AAGAAAATCCTTAGTTAACG+GGG 0.660888 1.4:-19353182 None:intergenic
ACCCTTTAAAGAGATCAAGA+GGG 0.661561 1.4:-19353603 None:intergenic
GCAAGGGAGTAATACCGCCA+GGG 0.662761 1.4:-19355654 None:intergenic
GCATCTACAACGGATTCTGA+GGG 0.663873 1.4:+19355685 MS.gene061104:CDS
TTTAACAAATGATCTACAGG+AGG 0.672470 1.4:+19355720 MS.gene061104:CDS
TCAACACCTGCTCAAAATGG+CGG 0.675936 1.4:+19353226 MS.gene061104:CDS
GGAAAGAAACTGTTGCATGT+TGG 0.681755 1.4:+19355423 MS.gene061104:CDS
GCTTGAGTCTGAATTTGACG+AGG 0.690205 1.4:+19355213 MS.gene061104:CDS
TGTCCACCGACAATAGCCAA+AGG 0.693157 1.4:-19354694 None:intergenic
AAGGTTCTCGAATGTGAACG+AGG 0.693475 1.4:+19355351 MS.gene061104:CDS
GTATCTGAATTCAAACTGGG+AGG 0.694347 1.4:-19353715 None:intergenic
GCAAACCATGGGGAACGTGG+AGG 0.714807 1.4:+19354647 MS.gene061104:CDS
ATACGCATGTGCAAACCATG+GGG 0.741686 1.4:+19354637 MS.gene061104:CDS
ACTTTGTGCCAGGAGCAGAG+AGG 0.743535 1.4:-19354747 None:intergenic
GCAGCAACCTGATTCAACGG+CGG 0.745706 1.4:-19351973 None:intergenic
TGATGATTCAGATTGCCAGG+AGG 0.754316 1.4:+19353315 MS.gene061104:CDS
GAAGTGCTGGGAAACCCTTG+TGG 0.767474 1.4:+19356416 MS.gene061104:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAAGTAAAAATTA+TGG + chr1.4:19352242-19352261 MS.gene061104:intron 10.0%
!!! AACTGTTTTTTTTTTTTTTT+TGG - chr1.4:19352673-19352692 None:intergenic 10.0%
!!! GTTTTTTTTTTTTTTTTGAA+AGG + chr1.4:19352059-19352078 MS.gene061104:intron 10.0%
!!! AATTTTCTAAAATCATTTCT+GGG + chr1.4:19352861-19352880 MS.gene061104:intron 15.0%
!!! AGTAGTTTATATTACTATTT+TGG + chr1.4:19352142-19352161 MS.gene061104:intron 15.0%
!!! ATTTGAAACAAATATTTTGT+TGG + chr1.4:19352188-19352207 MS.gene061104:intron 15.0%
!!! ATTTTAAAACAAACTTTAGA+CGG + chr1.4:19354537-19354556 MS.gene061104:intron 15.0%
!!! TAATTTTCTAAAATCATTTC+TGG + chr1.4:19352860-19352879 MS.gene061104:intron 15.0%
!!! TAGATTTAATTCTTTTATGT+AGG - chr1.4:19356166-19356185 None:intergenic 15.0%
!!! TTCTTATTCTTTTAATTAAG+AGG + chr1.4:19353803-19353822 MS.gene061104:intron 15.0%
!! AAAAATTGAGAATCTGAAAA+AGG - chr1.4:19352718-19352737 None:intergenic 20.0%
!! AGTATCAAAAATAGTCTAAT+TGG + chr1.4:19355826-19355845 MS.gene061104:intron 20.0%
!! GGCTATTTAAATAAATTTGA+AGG + chr1.4:19356045-19356064 MS.gene061104:intron 20.0%
!! TAATAAAAATCTAGCTATGA+TGG - chr1.4:19354572-19354591 None:intergenic 20.0%
!! TAATCACTCTTATAATATGT+TGG + chr1.4:19356482-19356501 MS.gene061104:CDS 20.0%
!! TCAAAGTAAATAACAATCAA+GGG - chr1.4:19352434-19352453 None:intergenic 20.0%
!! TTCAAAGTAAATAACAATCA+AGG - chr1.4:19352435-19352454 None:intergenic 20.0%
!!! GATCACTTTTTTTTTATCTT+AGG + chr1.4:19354435-19354454 MS.gene061104:intron 20.0%
!!! GTTCTTTTATAGCTAAATTT+TGG + chr1.4:19352303-19352322 MS.gene061104:intron 20.0%
!!! TACTGATTTATATTCTAAGT+AGG - chr1.4:19356248-19356267 None:intergenic 20.0%
!!! TAGCTAGATTTTTATTATCA+AGG + chr1.4:19354575-19354594 MS.gene061104:intron 20.0%
!!! TGATGTCATTTTAATGAATA+TGG + chr1.4:19353999-19354018 MS.gene061104:intron 20.0%
!!! TTTTTTTTTTTGAAAGGTCA+AGG + chr1.4:19352065-19352084 MS.gene061104:intron 20.0%
!!! TTTTTTTTTTTTGTGGTGTT+AGG + chr1.4:19352347-19352366 MS.gene061104:intron 20.0%
! ACATTGAAGCATAAATTGAT+AGG - chr1.4:19354152-19354171 None:intergenic 25.0%
! AGCACGAATATAAAAATATG+AGG - chr1.4:19354461-19354480 None:intergenic 25.0%
! ATATTGTTTAGGAAAGTTTG+AGG + chr1.4:19352970-19352989 MS.gene061104:intron 25.0%
! TAATCAACAATCCAATTACA+GGG - chr1.4:19354514-19354533 None:intergenic 25.0%
! TAGATTTAAACTGAAATTCC+AGG + chr1.4:19354610-19354629 MS.gene061104:intron 25.0%
! TATACATCATCAGAAGTTAT+AGG + chr1.4:19354878-19354897 MS.gene061104:CDS 25.0%
! TATGATGAGATAAAATTGAG+TGG + chr1.4:19354923-19354942 MS.gene061104:CDS 25.0%
! TTAAAACCCAAAAGACAAAA+TGG - chr1.4:19353834-19353853 None:intergenic 25.0%
! TTTGACAAAAAAGTTACTAG+AGG + chr1.4:19355761-19355780 MS.gene061104:intron 25.0%
!!! AATTCTAATGGTATTTTGAC+TGG + chr1.4:19353526-19353545 MS.gene061104:CDS 25.0%
!!! AGATTTTTCAAGAAAGTTGA+AGG + chr1.4:19352515-19352534 MS.gene061104:intron 25.0%
!!! AGTAACTTTTTTGTCAAAGT+AGG - chr1.4:19355759-19355778 None:intergenic 25.0%
!!! CAGTTTTTTTTATAGACAAG+TGG + chr1.4:19355944-19355963 MS.gene061104:intron 25.0%
!!! GTAACTTTTTTGTCAAAGTA+GGG - chr1.4:19355758-19355777 None:intergenic 25.0%
!!! TAACTTTTTTGTCAAAGTAG+GGG - chr1.4:19355757-19355776 None:intergenic 25.0%
!!! TATATTCGTGCTTTAACTTT+TGG + chr1.4:19354469-19354488 MS.gene061104:intron 25.0%
!!! TTGTGTTGATGATATTGTTT+AGG + chr1.4:19352959-19352978 MS.gene061104:intron 25.0%
AAAATACAGACAAGAAGTCA+AGG - chr1.4:19356372-19356391 None:intergenic 30.0%
AACTTCACTTCTTTGTCTAT+CGG - chr1.4:19356523-19356542 None:intergenic 30.0%
AAGAAAATCCTTAGTTAACG+GGG - chr1.4:19353185-19353204 None:intergenic 30.0%
AATCAACAATCCAATTACAG+GGG - chr1.4:19354513-19354532 None:intergenic 30.0%
AGCCAATTGTAAATCTGAAA+AGG - chr1.4:19354078-19354097 None:intergenic 30.0%
ATAACTCAGATTCTGATTTC+TGG + chr1.4:19354319-19354338 MS.gene061104:CDS 30.0%
ATTAGAGGTCTCAATTCTAA+TGG + chr1.4:19353514-19353533 MS.gene061104:CDS 30.0%
CAAGAAAATCCTTAGTTAAC+GGG - chr1.4:19353186-19353205 None:intergenic 30.0%
CAATGAATCCTGCAAAATTT+AGG - chr1.4:19354842-19354861 None:intergenic 30.0%
CTCTTTAACAAATGATCTAC+AGG + chr1.4:19355717-19355736 MS.gene061104:CDS 30.0%
GAATTAAAGAATCAACACGT+TGG - chr1.4:19354299-19354318 None:intergenic 30.0%
GAGACTTCTATTTCATTGAA+GGG + chr1.4:19354718-19354737 MS.gene061104:CDS 30.0%
GCAAGAAAATCCTTAGTTAA+CGG - chr1.4:19353187-19353206 None:intergenic 30.0%
GTAATCAACAATCCAATTAC+AGG - chr1.4:19354515-19354534 None:intergenic 30.0%
GTTGTCAAAAAGAAGAACAA+AGG + chr1.4:19356082-19356101 MS.gene061104:intron 30.0%
TAGTAGTACAACTATGACTT+TGG - chr1.4:19353582-19353601 None:intergenic 30.0%
TCAGTAGTTATCATGTTGTT+TGG + chr1.4:19356262-19356281 MS.gene061104:intron 30.0%
TGAGTATCTGAATTCAAACT+GGG - chr1.4:19353721-19353740 None:intergenic 30.0%
TTAAACCCCATAAAAACCAT+AGG - chr1.4:19355856-19355875 None:intergenic 30.0%
TTTAAACTGAAATTCCAGGA+AGG + chr1.4:19354614-19354633 MS.gene061104:intron 30.0%
TTTAACAAATGATCTACAGG+AGG + chr1.4:19355720-19355739 MS.gene061104:CDS 30.0%
! AGAGTGATTATTTCTCATCA+TGG - chr1.4:19356472-19356491 None:intergenic 30.0%
! ATTATTTCTCATCATGGCAT+AGG - chr1.4:19356466-19356485 None:intergenic 30.0%
! CCCATTAATATTTTGCGAAT+CGG + chr1.4:19353975-19353994 MS.gene061104:intron 30.0%
! CCGATTCGCAAAATATTAAT+GGG - chr1.4:19353978-19353997 None:intergenic 30.0%
! GGAAGATTTCTTGTTTATTC+TGG + chr1.4:19354348-19354367 MS.gene061104:CDS 30.0%
! GGTTTTTATGGGGTTTAAAT+AGG + chr1.4:19355858-19355877 MS.gene061104:intron 30.0%
! GTCCTTTTCAGATTTACAAT+TGG + chr1.4:19354073-19354092 MS.gene061104:intron 30.0%
! TCCGATTCGCAAAATATTAA+TGG - chr1.4:19353979-19353998 None:intergenic 30.0%
! TTTTTCCTTTTCTTATGCGT+GGG + chr1.4:19352926-19352945 MS.gene061104:intron 30.0%
!! AGGAGCATGAACATAATTTT+GGG + chr1.4:19355263-19355282 MS.gene061104:CDS 30.0%
!! ATTTGTACTGATGTTTTCTG+TGG + chr1.4:19355402-19355421 MS.gene061104:CDS 30.0%
!! CAAGGTTTGGTTTCTATTTT+TGG + chr1.4:19352083-19352102 MS.gene061104:intron 30.0%
!! GACATACTTTAAGGTTGATA+AGG - chr1.4:19356217-19356236 None:intergenic 30.0%
!! GGGTTTTAATCTATTTGTGA+TGG + chr1.4:19353845-19353864 MS.gene061104:intron 30.0%
!!! AACTTTTTTGTCAAAGTAGG+GGG - chr1.4:19355756-19355775 None:intergenic 30.0%
!!! AATGGTATTTTGACTGGATT+TGG + chr1.4:19353532-19353551 MS.gene061104:CDS 30.0%
!!! CTTGTCTGTATTTTTTATGC+TGG + chr1.4:19356378-19356397 MS.gene061104:intron 30.0%
!!! TTCGCGAAAGTATTTTTCAT+CGG + chr1.4:19353411-19353430 MS.gene061104:CDS 30.0%
!!! TTTTTTGAAAGGTCAAGGTT+TGG + chr1.4:19352070-19352089 MS.gene061104:intron 30.0%
AAAAAAACTGTGACACAGTC+TGG - chr1.4:19355934-19355953 None:intergenic 35.0%
AAATGATGATTCAGATTGCC+AGG + chr1.4:19353312-19353331 MS.gene061104:CDS 35.0%
AATACATCTCCTAGTGTTCT+AGG + chr1.4:19354959-19354978 MS.gene061104:CDS 35.0%
AATCCCAAGTTGTAGAGAAA+AGG - chr1.4:19356300-19356319 None:intergenic 35.0%
AGAAGATCTATCAAAAGCGA+AGG + chr1.4:19351738-19351757 MS.gene061104:CDS 35.0%
AGCTCATAGTAAAGCTTCTA+AGG + chr1.4:19351789-19351808 MS.gene061104:CDS 35.0%
AGCTTGTACAGATTCTGAAT+AGG + chr1.4:19353023-19353042 MS.gene061104:CDS 35.0%
ATAAACACTTCGAAGGAGAA+GGG + chr1.4:19355473-19355492 MS.gene061104:CDS 35.0%
ATAACACAACGTCCAGAAAA+GGG - chr1.4:19354787-19354806 None:intergenic 35.0%
ATATTCTAAGTAGGCTGACA+AGG - chr1.4:19356239-19356258 None:intergenic 35.0%
ATCAACAATCCAATTACAGG+GGG - chr1.4:19354512-19354531 None:intergenic 35.0%
ATCCCTCTTGATCTCTTTAA+AGG + chr1.4:19353601-19353620 MS.gene061104:CDS 35.0%
ATTAACCAAGTCAAACGAGT+TGG + chr1.4:19356606-19356625 MS.gene061104:CDS 35.0%
ATTTGTGATGGTATTCCAAC+AGG + chr1.4:19353857-19353876 MS.gene061104:intron 35.0%
CAACTTACATGTTTGTGAAC+AGG + chr1.4:19355117-19355136 MS.gene061104:intron 35.0%
CAATATGCAAGTAATCAGCA+AGG - chr1.4:19354246-19354265 None:intergenic 35.0%
CAATTCAGTAAATCCGAATG+AGG - chr1.4:19355797-19355816 None:intergenic 35.0%
CAGTTTGAATTCAGATACTC+AGG + chr1.4:19353720-19353739 MS.gene061104:CDS 35.0%
CGGTGGAAATACATATTTCT+TGG - chr1.4:19355623-19355642 None:intergenic 35.0%
CTGAGTATCTGAATTCAAAC+TGG - chr1.4:19353722-19353741 None:intergenic 35.0%
GAAAAATACTTTCGCGAAGA+TGG - chr1.4:19353409-19353428 None:intergenic 35.0%
GGAGACTTCTATTTCATTGA+AGG + chr1.4:19354717-19354736 MS.gene061104:CDS 35.0%
GGTGTGTTGTATTTGTTTAC+TGG + chr1.4:19352536-19352555 MS.gene061104:intron 35.0%
TAAAGCTGGTTATGCATCTT+CGG + chr1.4:19353678-19353697 MS.gene061104:CDS 35.0%
TAGGAAAGTTTGAGGAAAGA+AGG + chr1.4:19352978-19352997 MS.gene061104:intron 35.0%
TAGTCTAATTGGATTGCCTA+TGG + chr1.4:19355837-19355856 MS.gene061104:intron 35.0%
TCACTGCTCTATTTAGAAGT+TGG - chr1.4:19355534-19355553 None:intergenic 35.0%
TCATCAGAAGTTATAGGATC+AGG + chr1.4:19354884-19354903 MS.gene061104:CDS 35.0%
TCCCTCTTGATCTCTTTAAA+GGG + chr1.4:19353602-19353621 MS.gene061104:CDS 35.0%
TGAATTCAGATACTCAGGTT+GGG + chr1.4:19353725-19353744 MS.gene061104:intron 35.0%
TGATCTTACTGCAAAATTGC+TGG + chr1.4:19353060-19353079 MS.gene061104:CDS 35.0%
TGGCAATCTGAATCATCATT+TGG - chr1.4:19353313-19353332 None:intergenic 35.0%
TGTTAGGGAATCAAATGCAA+CGG + chr1.4:19351815-19351834 MS.gene061104:CDS 35.0%
TTAACCAAGTCAAACGAGTT+GGG + chr1.4:19356607-19356626 MS.gene061104:CDS 35.0%
TTGAATTCAGATACTCAGGT+TGG + chr1.4:19353724-19353743 MS.gene061104:intron 35.0%
TTTAAATAGCCAAGCCTGTT+AGG - chr1.4:19356036-19356055 None:intergenic 35.0%
TTTATGCTGGTGTGTAGATT+GGG + chr1.4:19356391-19356410 MS.gene061104:intron 35.0%
TTTGTCTATCGGAACGTTTA+CGG - chr1.4:19356512-19356531 None:intergenic 35.0%
! AAAGAAGATTTTCCGGTTCA+CGG + chr1.4:19356670-19356689 MS.gene061104:CDS 35.0%
! AATTTTGCAGTAAGATCAGC+GGG - chr1.4:19353058-19353077 None:intergenic 35.0%
! ACAGGTTGAAAATGGTTTCA+AGG + chr1.4:19355135-19355154 MS.gene061104:intron 35.0%
! ACCCTTTAAAGAGATCAAGA+GGG - chr1.4:19353606-19353625 None:intergenic 35.0%
! ACTTTTTGAATGAGCTTGGT+TGG + chr1.4:19355314-19355333 MS.gene061104:CDS 35.0%
! AGCATGAACATAATTTTGGG+AGG + chr1.4:19355266-19355285 MS.gene061104:CDS 35.0%
! AGCTAGCATCGAATGAATAA+AGG - chr1.4:19356712-19356731 None:intergenic 35.0%
! CAAAGTGTACCATTTAAAGC+TGG + chr1.4:19353664-19353683 MS.gene061104:CDS 35.0%
! CAATTTTGCAGTAAGATCAG+CGG - chr1.4:19353059-19353078 None:intergenic 35.0%
! CAGGTTGAAAATGGTTTCAA+GGG + chr1.4:19355136-19355155 MS.gene061104:intron 35.0%
! CATCCTTTTCTCTACAACTT+GGG + chr1.4:19356294-19356313 MS.gene061104:intron 35.0%
! CTGTTTGTCCTAAATTTTGC+AGG + chr1.4:19354831-19354850 MS.gene061104:intron 35.0%
! GATTCTGATTTCTGGAGAAA+TGG + chr1.4:19354327-19354346 MS.gene061104:CDS 35.0%
! GATTGCCTATGGTTTTTATG+GGG + chr1.4:19355848-19355867 MS.gene061104:intron 35.0%
! GCTAGCATCGAATGAATAAA+GGG - chr1.4:19356711-19356730 None:intergenic 35.0%
! GGATTGCCTATGGTTTTTAT+GGG + chr1.4:19355847-19355866 MS.gene061104:intron 35.0%
! GTTTGTGAACAGGTTGAAAA+TGG + chr1.4:19355127-19355146 MS.gene061104:intron 35.0%
! GTTTTTCCTTTTCTTATGCG+TGG + chr1.4:19352925-19352944 MS.gene061104:intron 35.0%
! TCATCCTTTTCTCTACAACT+TGG + chr1.4:19356293-19356312 MS.gene061104:intron 35.0%
! TGAACCGGAAAATCTTCTTT+TGG - chr1.4:19356670-19356689 None:intergenic 35.0%
! TGGATTGCCTATGGTTTTTA+TGG + chr1.4:19355846-19355865 MS.gene061104:intron 35.0%
! TTTTATGCTGGTGTGTAGAT+TGG + chr1.4:19356390-19356409 MS.gene061104:intron 35.0%
! TTTTGCATTAGCTCAATTCC+CGG - chr1.4:19356582-19356601 None:intergenic 35.0%
!! AAAGCTTCTAAGGCTTTGTT+AGG + chr1.4:19351799-19351818 MS.gene061104:CDS 35.0%
!! AAGCTTCTAAGGCTTTGTTA+GGG + chr1.4:19351800-19351819 MS.gene061104:CDS 35.0%
!! ATTCGTGCTTTAACTTTTGG+AGG + chr1.4:19354472-19354491 MS.gene061104:intron 35.0%
!! GAGGAGCATGAACATAATTT+TGG + chr1.4:19355262-19355281 MS.gene061104:CDS 35.0%
!! GATGCATAACCAGCTTTAAA+TGG - chr1.4:19353676-19353695 None:intergenic 35.0%
!! GCTTAGCCATTTTGTCTTTT+GGG + chr1.4:19353825-19353844 MS.gene061104:intron 35.0%
!! TTGCACTTTTTGAATGAGCT+TGG + chr1.4:19355310-19355329 MS.gene061104:CDS 35.0%
!!! ACTTTTTTGTCAAAGTAGGG+GGG - chr1.4:19355755-19355774 None:intergenic 35.0%
!!! GACTAGTTTTGATTTCTGAC+TGG + chr1.4:19354408-19354427 MS.gene061104:intron 35.0%
AAACCCTTGTGGATGAAAAC+GGG + chr1.4:19356427-19356446 MS.gene061104:CDS 40.0%
AAAGCTGGTTATGCATCTTC+GGG + chr1.4:19353679-19353698 MS.gene061104:CDS 40.0%
AAATTCATCTGCACAACAGG+AGG - chr1.4:19353478-19353497 None:intergenic 40.0%
AACTTCTGCAATTGCACACT+TGG - chr1.4:19356643-19356662 None:intergenic 40.0%
AATTGATAGGACAACACAGC+CGG - chr1.4:19354139-19354158 None:intergenic 40.0%
ACTGCAAAATTGCTGGATGT+TGG + chr1.4:19353067-19353086 MS.gene061104:CDS 40.0%
ACTGCACATGATTACTGTGA+TGG + chr1.4:19355019-19355038 MS.gene061104:intron 40.0%
AGAAACTGAGCCTACATAAG+GGG - chr1.4:19356778-19356797 None:intergenic 40.0%
ATCAACCAGCATATCCAGAA+GGG - chr1.4:19355455-19355474 None:intergenic 40.0%
ATCAGTACTAACTTTGTGCC+AGG - chr1.4:19354760-19354779 None:intergenic 40.0%
ATCGGAAAGTAGTAATCCTG+TGG + chr1.4:19353429-19353448 MS.gene061104:CDS 40.0%
ATCTCATCATAGACCATACC+AGG - chr1.4:19354914-19354933 None:intergenic 40.0%
ATGTAACTCTCCAAGTCTGA+TGG - chr1.4:19354111-19354130 None:intergenic 40.0%
ATTCAAAGCAAGCATGAACC+AGG - chr1.4:19353762-19353781 None:intergenic 40.0%
ATTTGGAGGCCATGCAAATA+AGG + chr1.4:19353549-19353568 MS.gene061104:CDS 40.0%
CACAAGTAGCATTTGCTTGT+TGG - chr1.4:19352902-19352921 None:intergenic 40.0%
CAGACTTGGAGAGTTACATA+AGG + chr1.4:19354112-19354131 MS.gene061104:CDS 40.0%
CAGTTAGCATCACACAAAGA+TGG + chr1.4:19354375-19354394 MS.gene061104:CDS 40.0%
CATAACACAACGTCCAGAAA+AGG - chr1.4:19354788-19354807 None:intergenic 40.0%
CATACTGCCTAGTCTATGTT+AGG + chr1.4:19355908-19355927 MS.gene061104:intron 40.0%
CATATGAGAGAAAGAAGCAG+TGG + chr1.4:19353274-19353293 MS.gene061104:CDS 40.0%
CATATGATCTGCACTACTTG+TGG - chr1.4:19353260-19353279 None:intergenic 40.0%
CCAAAATTCATCTGCACAAC+AGG - chr1.4:19353481-19353500 None:intergenic 40.0%
CGTTGTGTTATGCTTCTTTC+TGG + chr1.4:19354796-19354815 MS.gene061104:intron 40.0%
GAAACCCTTGTGGATGAAAA+CGG + chr1.4:19356426-19356445 MS.gene061104:CDS 40.0%
GAGAAACTGAGCCTACATAA+GGG - chr1.4:19356779-19356798 None:intergenic 40.0%
GATAAACACTTCGAAGGAGA+AGG + chr1.4:19355472-19355491 MS.gene061104:CDS 40.0%
GCTGACAAGGACATACTTTA+AGG - chr1.4:19356226-19356245 None:intergenic 40.0%
GGAAAGAAACTGTTGCATGT+TGG + chr1.4:19355423-19355442 MS.gene061104:CDS 40.0%
GGATTATCATCGACGTCATA+AGG + chr1.4:19351759-19351778 MS.gene061104:CDS 40.0%
GTAGTAATCCTGTGGATGAA+AGG + chr1.4:19353437-19353456 MS.gene061104:CDS 40.0%
GTATCTGAATTCAAACTGGG+AGG - chr1.4:19353718-19353737 None:intergenic 40.0%
GTTGATATCAGTGTCTCCTT+TGG + chr1.4:19354678-19354697 MS.gene061104:CDS 40.0%
TAAATCCTCTTGTGCCTAAC+AGG + chr1.4:19356019-19356038 MS.gene061104:intron 40.0%
TAACACAACGTCCAGAAAAG+GGG - chr1.4:19354786-19354805 None:intergenic 40.0%
TAACCAAGTCAAACGAGTTG+GGG + chr1.4:19356608-19356627 MS.gene061104:CDS 40.0%
TACTAACACGTCTTTGCATC+TGG - chr1.4:19354039-19354058 None:intergenic 40.0%
TATCAACCAGCATATCCAGA+AGG - chr1.4:19355456-19355475 None:intergenic 40.0%
TATTCCAACAGGATCGTACT+GGG + chr1.4:19353868-19353887 MS.gene061104:intron 40.0%
TCAACAATCCAATTACAGGG+GGG - chr1.4:19354511-19354530 None:intergenic 40.0%
TCAGTAAATCCGAATGAGGA+GGG - chr1.4:19355793-19355812 None:intergenic 40.0%
TCGTCAAATTCAGACTCAAG+CGG - chr1.4:19355214-19355233 None:intergenic 40.0%
TGGAGTTTGATGAAGGGAAA+CGG + chr1.4:19351872-19351891 MS.gene061104:CDS 40.0%
TGTACAAGCTGCTCTTTATC+TGG - chr1.4:19353013-19353032 None:intergenic 40.0%
TTAGCAGCAACCTGATTCAA+CGG - chr1.4:19351979-19351998 None:intergenic 40.0%
TTCAAAGCAAGCATGAACCA+GGG - chr1.4:19353761-19353780 None:intergenic 40.0%
TTCAGTAAATCCGAATGAGG+AGG - chr1.4:19355794-19355813 None:intergenic 40.0%
TTGATCATCGCGATGATGAT+AGG - chr1.4:19353143-19353162 None:intergenic 40.0%
TTGTCTATCGGAACGTTTAC+GGG - chr1.4:19356511-19356530 None:intergenic 40.0%
! AAATTGCCGCTGCAACTTTT+TGG + chr1.4:19353349-19353368 MS.gene061104:CDS 40.0%
! ATGTTCATGCTCCTCTGAAA+TGG - chr1.4:19355257-19355276 None:intergenic 40.0%
! CCTGTTGTGCAGATGAATTT+TGG + chr1.4:19353478-19353497 MS.gene061104:CDS 40.0%
! CTAATTTTCCCCCCTGTAAT+TGG + chr1.4:19354500-19354519 MS.gene061104:intron 40.0%
! GAAAAGAAAGTGCACAAGCA+TGG + chr1.4:19355552-19355571 MS.gene061104:CDS 40.0%
! GAATCAGGTTGCTGCTAATT+TGG + chr1.4:19351981-19352000 MS.gene061104:CDS 40.0%
! GACCCTTTAAAGAGATCAAG+AGG - chr1.4:19353607-19353626 None:intergenic 40.0%
! TGTGTTTGTGTGTTATTCCG+TGG + chr1.4:19356750-19356769 MS.gene061104:intron 40.0%
! TTCAATGTCTTCTGCTGCTT+GGG + chr1.4:19354164-19354183 MS.gene061104:CDS 40.0%
! TTGTTGACTGCTATTGCTGA+TGG + chr1.4:19352015-19352034 MS.gene061104:CDS 40.0%
!! ATGAATTTTGGTCTGCAAGG+TGG + chr1.4:19353490-19353509 MS.gene061104:CDS 40.0%
!! CAGATGAATTTTGGTCTGCA+AGG + chr1.4:19353487-19353506 MS.gene061104:CDS 40.0%
!! CTGGTTGATAAACACTTCGA+AGG + chr1.4:19355466-19355485 MS.gene061104:CDS 40.0%
!! GATGCATTGGCTATTATCAC+TGG - chr1.4:19355172-19355191 None:intergenic 40.0%
!! GGCTAGTTTCCTTATTTGCA+TGG - chr1.4:19353561-19353580 None:intergenic 40.0%
!! GGCTTAGCCATTTTGTCTTT+TGG + chr1.4:19353824-19353843 MS.gene061104:intron 40.0%
!! GGTTTTGTCAACAGTGTAGT+AGG + chr1.4:19351836-19351855 MS.gene061104:CDS 40.0%
!!! GGTATTTTGACTGGATTTGG+AGG + chr1.4:19353535-19353554 MS.gene061104:CDS 40.0%
!!! GTACTGATTTTCCCCTTTTC+TGG + chr1.4:19354772-19354791 MS.gene061104:intron 40.0%
AAACAGCGACCTAGAACACT+AGG - chr1.4:19354971-19354990 None:intergenic 45.0%
AAAGCCTCATCCCTTGACTT+GGG - chr1.4:19355292-19355311 None:intergenic 45.0%
AAATCCTTAGTTAACGGGGC+AGG - chr1.4:19353181-19353200 None:intergenic 45.0%
AACCTGTCGAGCGAATAATC+TGG - chr1.4:19355379-19355398 None:intergenic 45.0%
AAGGAGAAGGGTTGTCAACA+GGG + chr1.4:19355485-19355504 MS.gene061104:CDS 45.0%
AAGGGAAACGGAGTTGTAGA+CGG + chr1.4:19351884-19351903 MS.gene061104:CDS 45.0%
AAGGTTCTCGAATGTGAACG+AGG + chr1.4:19355351-19355370 MS.gene061104:CDS 45.0%
AATCCTTAGTTAACGGGGCA+GGG - chr1.4:19353180-19353199 None:intergenic 45.0%
ACAACAGGAGGAGATGAAGA+CGG - chr1.4:19353466-19353485 None:intergenic 45.0%
AGCCAATGCATCCATTTGCA+AGG + chr1.4:19355180-19355199 MS.gene061104:CDS 45.0%
AGGAAATGTCCCTCCTCATT+CGG + chr1.4:19355781-19355800 MS.gene061104:intron 45.0%
AGGAGGGTGAAGTTTGCATT+TGG - chr1.4:19353123-19353142 None:intergenic 45.0%
AGTCTGGCCTAACATAGACT+AGG - chr1.4:19355918-19355937 None:intergenic 45.0%
ATACGCATGTGCAAACCATG+GGG + chr1.4:19354637-19354656 MS.gene061104:CDS 45.0%
ATCATCGCGATGATGATAGG+AGG - chr1.4:19353140-19353159 None:intergenic 45.0%
ATTAGCTCAATTCCCGGTGA+TGG - chr1.4:19356576-19356595 None:intergenic 45.0%
ATTGATAGGACAACACAGCC+GGG - chr1.4:19354138-19354157 None:intergenic 45.0%
ATTTAACTCGAGCATCCTCC+TGG - chr1.4:19353333-19353352 None:intergenic 45.0%
CAAAACCCTTCTGGATATGC+TGG + chr1.4:19355447-19355466 MS.gene061104:CDS 45.0%
CAGTAAGATCAGCGGGTAAA+GGG - chr1.4:19353051-19353070 None:intergenic 45.0%
CATGTTGGTCAAAACCCTTC+TGG + chr1.4:19355438-19355457 MS.gene061104:CDS 45.0%
CCATCAACACCTGCTCAAAA+TGG + chr1.4:19353223-19353242 MS.gene061104:CDS 45.0%
CCTTCATCAAACTCCACCAA+CGG - chr1.4:19351868-19351887 None:intergenic 45.0%
CGGTATTACTCCCTTGCATT+TGG + chr1.4:19355660-19355679 MS.gene061104:CDS 45.0%
CTCCTTGCAAATGGATGCAT+TGG - chr1.4:19355185-19355204 None:intergenic 45.0%
CTTAGCCCACGCATAAGAAA+AGG - chr1.4:19352934-19352953 None:intergenic 45.0%
CTTCAATGTCTTCTGCTGCT+TGG + chr1.4:19354163-19354182 MS.gene061104:CDS 45.0%
GAAGAGCCAAAAAGTTGCAG+CGG - chr1.4:19353358-19353377 None:intergenic 45.0%
GATACGCATGTGCAAACCAT+GGG + chr1.4:19354636-19354655 MS.gene061104:CDS 45.0%
GCATTTGGCAGCATCTACAA+CGG + chr1.4:19355675-19355694 MS.gene061104:CDS 45.0%
GCGAAGATGGCAATTTCGAT+GGG - chr1.4:19353396-19353415 None:intergenic 45.0%
GCTATTGCTGATGGTTCTCA+AGG + chr1.4:19352024-19352043 MS.gene061104:CDS 45.0%
GCTTGAGTCTGAATTTGACG+AGG + chr1.4:19355213-19355232 MS.gene061104:CDS 45.0%
GGAGAAACTGAGCCTACATA+AGG - chr1.4:19356780-19356799 None:intergenic 45.0%
GGAGACACTGATATCAACTC+TGG - chr1.4:19354676-19354695 None:intergenic 45.0%
GTAGATGCTGCCAAATGCAA+GGG - chr1.4:19355673-19355692 None:intergenic 45.0%
GTATTCCAACAGGATCGTAC+TGG + chr1.4:19353867-19353886 MS.gene061104:intron 45.0%
GTATTTCCACCGAATCTCGA+GGG + chr1.4:19355631-19355650 MS.gene061104:CDS 45.0%
GTCATGCATGTCAGTCAACA+GGG + chr1.4:19355880-19355899 MS.gene061104:intron 45.0%
GTGTAGTAGGTTTCATCCGT+TGG + chr1.4:19351849-19351868 MS.gene061104:CDS 45.0%
GTGTCTCCTTTGGCTATTGT+CGG + chr1.4:19354688-19354707 MS.gene061104:CDS 45.0%
GTTATAGGATCAGGAGATCC+TGG + chr1.4:19354893-19354912 MS.gene061104:CDS 45.0%
TAGTAGGTTTCATCCGTTGG+TGG + chr1.4:19351852-19351871 MS.gene061104:CDS 45.0%
TCAACACCTGCTCAAAATGG+CGG + chr1.4:19353226-19353245 MS.gene061104:CDS 45.0%
TCATCGCGATGATGATAGGA+GGG - chr1.4:19353139-19353158 None:intergenic 45.0%
TCATGCATGTCAGTCAACAG+GGG + chr1.4:19355881-19355900 MS.gene061104:intron 45.0%
TGATGATTCAGATTGCCAGG+AGG + chr1.4:19353315-19353334 MS.gene061104:CDS 45.0%
TGCAATTGCACACTTGGAAC+AGG - chr1.4:19356637-19356656 None:intergenic 45.0%
TGCTGATGGTTCTCAAGGTT+TGG + chr1.4:19352029-19352048 MS.gene061104:intron 45.0%
TGTAGATGCTGCCAAATGCA+AGG - chr1.4:19355674-19355693 None:intergenic 45.0%
TGTATTTCCACCGAATCTCG+AGG + chr1.4:19355630-19355649 MS.gene061104:CDS 45.0%
TTAGCTCAATTCCCGGTGAT+GGG - chr1.4:19356575-19356594 None:intergenic 45.0%
TTCCAGATTATTCGCTCGAC+AGG + chr1.4:19355374-19355393 MS.gene061104:CDS 45.0%
TTCTACACGACCATCAGACT+TGG + chr1.4:19354098-19354117 MS.gene061104:CDS 45.0%
TTGGAGAGTTACATAAGGCC+CGG + chr1.4:19354117-19354136 MS.gene061104:CDS 45.0%
! AGCATCTACAACGGATTCTG+AGG + chr1.4:19355684-19355703 MS.gene061104:CDS 45.0%
! AGCTTGGTTGGCTGTTTCAA+AGG + chr1.4:19355326-19355345 MS.gene061104:CDS 45.0%
! CGCGCCAAAAGAAGATTTTC+CGG + chr1.4:19356663-19356682 MS.gene061104:CDS 45.0%
! CGTTGGTGGAGTTTGATGAA+GGG + chr1.4:19351866-19351885 MS.gene061104:CDS 45.0%
! GATGTGTGATGCCATTTCAG+AGG + chr1.4:19355243-19355262 MS.gene061104:CDS 45.0%
! GCATCTACAACGGATTCTGA+GGG + chr1.4:19355685-19355704 MS.gene061104:CDS 45.0%
! GCTTGGTTGGCTGTTTCAAA+GGG + chr1.4:19355327-19355346 MS.gene061104:CDS 45.0%
! GTTGGCTGTTTCAAAGGGAA+AGG + chr1.4:19355332-19355351 MS.gene061104:CDS 45.0%
! TCTAGGTCGCTGTTTCATTG+AGG + chr1.4:19354976-19354995 MS.gene061104:CDS 45.0%
!! GGAGACTTGCTGGTCATAAT+CGG + chr1.4:19351905-19351924 MS.gene061104:CDS 45.0%
!! GTAGATTGGGTTGAAGTGCT+GGG + chr1.4:19356404-19356423 MS.gene061104:intron 45.0%
!! TGTAGATTGGGTTGAAGTGC+TGG + chr1.4:19356403-19356422 MS.gene061104:intron 45.0%
!!! CCATTTTGAGCAGGTGTTGA+TGG - chr1.4:19353226-19353245 None:intergenic 45.0%
!!! TTTTAGTTTTTTTTAATAAT+TGG + chr1.4:19352402-19352421 MS.gene061104:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG + chr1.4:19352340-19352359 MS.gene061104:intron 5.0%
AAGCATCCTAGCCATTTCCC+AGG + chr1.4:19353915-19353934 MS.gene061104:CDS 50.0%
AGCCTACATAAGGGGTTCCA+CGG - chr1.4:19356770-19356789 None:intergenic 50.0%
AGGATCAGGAGATCCTGGTA+TGG + chr1.4:19354898-19354917 MS.gene061104:CDS 50.0%
AGTCCCCAACTCGTTTGACT+TGG - chr1.4:19356614-19356633 None:intergenic 50.0%
AGTTGTAGACGGAGACTTGC+TGG + chr1.4:19351895-19351914 MS.gene061104:CDS 50.0%
ATCCTTAGTTAACGGGGCAG+GGG - chr1.4:19353179-19353198 None:intergenic 50.0%
ATGCATGTCAGTCAACAGGG+GGG + chr1.4:19355883-19355902 MS.gene061104:intron 50.0%
CAAAGCCTCATCCCTTGACT+TGG - chr1.4:19355293-19355312 None:intergenic 50.0%
CATGCATGTCAGTCAACAGG+GGG + chr1.4:19355882-19355901 MS.gene061104:intron 50.0%
CGCGAAGATGGCAATTTCGA+TGG - chr1.4:19353397-19353416 None:intergenic 50.0%
CGGTCTCAACTCCTTGCAAA+TGG - chr1.4:19355194-19355213 None:intergenic 50.0%
CTCAGTTTCTCCCTTCAGGT+GGG + chr1.4:19356788-19356807 MS.gene061104:CDS 50.0%
CTCATCATGGCATAGGCATG+TGG - chr1.4:19356459-19356478 None:intergenic 50.0%
GAAGGAGAAGGGTTGTCAAC+AGG + chr1.4:19355484-19355503 MS.gene061104:CDS 50.0%
GCAGTAAGATCAGCGGGTAA+AGG - chr1.4:19353052-19353071 None:intergenic 50.0%
GGATACGCATGTGCAAACCA+TGG + chr1.4:19354635-19354654 MS.gene061104:CDS 50.0%
GGTCATGCATGTCAGTCAAC+AGG + chr1.4:19355879-19355898 MS.gene061104:intron 50.0%
GGTCTGCAAGGTGGTATTAG+AGG + chr1.4:19353499-19353518 MS.gene061104:CDS 50.0%
TAGGCTCAGTTTCTCCCTTC+AGG + chr1.4:19356784-19356803 MS.gene061104:intron 50.0%
TCTCCTTTGGCTATTGTCGG+TGG + chr1.4:19354691-19354710 MS.gene061104:CDS 50.0%
TGTCCACCGACAATAGCCAA+AGG - chr1.4:19354697-19354716 None:intergenic 50.0%
TTCCGTGGAACCCCTTATGT+AGG + chr1.4:19356765-19356784 MS.gene061104:intron 50.0%
TTCTCCCAGTACGATCCTGT+TGG - chr1.4:19353875-19353894 None:intergenic 50.0%
TTGCACATGCGTATCCTTCC+TGG - chr1.4:19354631-19354650 None:intergenic 50.0%
TTGCTGGTCATAATCGGCGT+CGG + chr1.4:19351911-19351930 MS.gene061104:CDS 50.0%
TTTGGCTATTGTCGGTGGAC+AGG + chr1.4:19354696-19354715 MS.gene061104:CDS 50.0%
! CCGTTGGTGGAGTTTGATGA+AGG + chr1.4:19351865-19351884 MS.gene061104:CDS 50.0%
! CTGCCCGTTTTCATCCACAA+GGG - chr1.4:19356433-19356452 None:intergenic 50.0%
! GGTTGGGATTTTGCAAACCC+TGG + chr1.4:19353741-19353760 MS.gene061104:intron 50.0%
! TCTGCCCGTTTTCATCCACA+AGG - chr1.4:19356434-19356453 None:intergenic 50.0%
! TGAGATAGAGCACCCATCAC+CGG + chr1.4:19356560-19356579 MS.gene061104:CDS 50.0%
!! AGCAGGTGTTGATGGAGTTG+TGG - chr1.4:19353218-19353237 None:intergenic 50.0%
!! ATTTTGGGAGGCCCAAGTCA+AGG + chr1.4:19355278-19355297 MS.gene061104:CDS 50.0%
!! TTTTGGGAGGCCCAAGTCAA+GGG + chr1.4:19355279-19355298 MS.gene061104:CDS 50.0%
!!! TTCGATGGGCTGTCGTTTTC+TGG - chr1.4:19353382-19353401 None:intergenic 50.0%
ACTTTGTGCCAGGAGCAGAG+AGG - chr1.4:19354750-19354769 None:intergenic 55.0%
AGCGTTCCTGGGAAATGGCT+AGG - chr1.4:19353924-19353943 None:intergenic 55.0%
AGGGTTGTCAACAGGGTCAG+TGG + chr1.4:19355492-19355511 MS.gene061104:CDS 55.0%
CACGTCTTTGCATCTGGCGA+AGG - chr1.4:19354033-19354052 None:intergenic 55.0%
CCAAGCCTGTTAGGCACAAG+AGG - chr1.4:19356027-19356046 None:intergenic 55.0%
CCTCTTGTGCCTAACAGGCT+TGG + chr1.4:19356024-19356043 MS.gene061104:intron 55.0%
CCTGCTCAAAATGGCGGCAA+CGG + chr1.4:19353232-19353251 MS.gene061104:CDS 55.0%
CTGCTCAAAATGGCGGCAAC+GGG + chr1.4:19353233-19353252 MS.gene061104:CDS 55.0%
GAAAACGCAGCCGGATGAAG+TGG + chr1.4:19351936-19351955 MS.gene061104:CDS 55.0%
GCAAGGGAGTAATACCGCCA+GGG - chr1.4:19355657-19355676 None:intergenic 55.0%
GCAGCAACCTGATTCAACGG+CGG - chr1.4:19351976-19351995 None:intergenic 55.0%
GCTCAGTTTCTCCCTTCAGG+TGG + chr1.4:19356787-19356806 MS.gene061104:CDS 55.0%
GGAAGAAACCTCTCTGCTCC+TGG + chr1.4:19354739-19354758 MS.gene061104:CDS 55.0%
TCCTTAGTTAACGGGGCAGG+GGG - chr1.4:19353178-19353197 None:intergenic 55.0%
TGCAAGGGAGTAATACCGCC+AGG - chr1.4:19355658-19355677 None:intergenic 55.0%
TGCATGTCAGTCAACAGGGG+GGG + chr1.4:19355884-19355903 MS.gene061104:intron 55.0%
TGTGCAAACCATGGGGAACG+TGG + chr1.4:19354644-19354663 MS.gene061104:CDS 55.0%
TTCGCAGCGTTCCTGGGAAA+TGG - chr1.4:19353929-19353948 None:intergenic 55.0%
! GAGATAGAGCACCCATCACC+GGG + chr1.4:19356561-19356580 MS.gene061104:CDS 55.0%
! GATTTTCCGGTTCACGGAGC+TGG + chr1.4:19356676-19356695 MS.gene061104:CDS 55.0%
!! GAAGTGCTGGGAAACCCTTG+TGG + chr1.4:19356416-19356435 MS.gene061104:CDS 55.0%
AACGCAGCCGGATGAAGTGG+CGG + chr1.4:19351939-19351958 MS.gene061104:CDS 60.0%
ACCTGTGTTCGCAGCGTTCC+TGG - chr1.4:19353936-19353955 None:intergenic 60.0%
AGGTTCGCCGCCGTTGAATC+AGG + chr1.4:19351966-19351985 MS.gene061104:CDS 60.0%
CCTCCAACCGCCACTTCATC+CGG - chr1.4:19351949-19351968 None:intergenic 60.0%
CCTGTGTTCGCAGCGTTCCT+GGG - chr1.4:19353935-19353954 None:intergenic 60.0%
CCTTAGTTAACGGGGCAGGG+GGG - chr1.4:19353177-19353196 None:intergenic 60.0%
CTTAGTTAACGGGGCAGGGG+GGG - chr1.4:19353176-19353195 None:intergenic 60.0%
GACGGCGACCTTTCATCCAC+AGG - chr1.4:19353448-19353467 None:intergenic 60.0%
GAGGCCCAAGTCAAGGGATG+AGG + chr1.4:19355285-19355304 MS.gene061104:CDS 60.0%
GCAAACCATGGGGAACGTGG+AGG + chr1.4:19354647-19354666 MS.gene061104:CDS 60.0%
GTGAAGCCAGCTCCGTGAAC+CGG - chr1.4:19356685-19356704 None:intergenic 60.0%
! CTGGTCATAATCGGCGTCGG+AGG + chr1.4:19351914-19351933 MS.gene061104:CDS 60.0%
! GGTTCACGGAGCTGGCTTCA+CGG + chr1.4:19356684-19356703 MS.gene061104:CDS 60.0%
!! CCGTTGCCGCCATTTTGAGC+AGG - chr1.4:19353235-19353254 None:intergenic 60.0%
CAGCCGGATGAAGTGGCGGT+TGG + chr1.4:19351943-19351962 MS.gene061104:CDS 65.0%
CCCAGGAACGCTGCGAACAC+AGG + chr1.4:19353932-19353951 MS.gene061104:CDS 65.0%
CCCCCCTGCCCCGTTAACTA+AGG + chr1.4:19353174-19353193 MS.gene061104:CDS 65.0%
CCGGATGAAGTGGCGGTTGG+AGG + chr1.4:19351946-19351965 MS.gene061104:CDS 65.0%
GCGTCGGAGGAAAACGCAGC+CGG + chr1.4:19351927-19351946 MS.gene061104:CDS 65.0%
GGAGACCTCCACGTTCCCCA+TGG - chr1.4:19354655-19354674 None:intergenic 65.0%
CCACCGAATCTCGAGGGCCC+TGG + chr1.4:19355637-19355656 MS.gene061104:CDS 70.0%
CCAGGGCCCTCGAGATTCGG+TGG - chr1.4:19355640-19355659 None:intergenic 70.0%
CCGAATCTCGAGGGCCCTGG+CGG + chr1.4:19355640-19355659 MS.gene061104:CDS 70.0%
CCGCCAGGGCCCTCGAGATT+CGG - chr1.4:19355643-19355662 None:intergenic 70.0%
!! GGGGCAGGGGGGGTGTTGTT+TGG - chr1.4:19353166-19353185 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 19351715 19356819 19351715 ID=MS.gene061104
chr1.4 mRNA 19351715 19356819 19351715 ID=MS.gene061104.t1;Parent=MS.gene061104
chr1.4 exon 19351715 19352045 19351715 ID=MS.gene061104.t1.exon1;Parent=MS.gene061104.t1
chr1.4 CDS 19351715 19352045 19351715 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
chr1.4 exon 19352981 19353741 19352981 ID=MS.gene061104.t1.exon2;Parent=MS.gene061104.t1
chr1.4 CDS 19352981 19353741 19352981 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
chr1.4 exon 19353879 19353953 19353879 ID=MS.gene061104.t1.exon3;Parent=MS.gene061104.t1
chr1.4 CDS 19353879 19353953 19353879 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
chr1.4 exon 19354084 19354191 19354084 ID=MS.gene061104.t1.exon4;Parent=MS.gene061104.t1
chr1.4 CDS 19354084 19354191 19354084 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
chr1.4 exon 19354279 19354396 19354279 ID=MS.gene061104.t1.exon5;Parent=MS.gene061104.t1
chr1.4 CDS 19354279 19354396 19354279 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
chr1.4 exon 19354632 19354767 19354632 ID=MS.gene061104.t1.exon6;Parent=MS.gene061104.t1
chr1.4 CDS 19354632 19354767 19354632 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
chr1.4 exon 19354853 19354997 19354853 ID=MS.gene061104.t1.exon7;Parent=MS.gene061104.t1
chr1.4 CDS 19354853 19354997 19354853 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
chr1.4 exon 19355139 19355741 19355139 ID=MS.gene061104.t1.exon8;Parent=MS.gene061104.t1
chr1.4 CDS 19355139 19355741 19355139 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
chr1.4 exon 19356408 19356746 19356408 ID=MS.gene061104.t1.exon9;Parent=MS.gene061104.t1
chr1.4 CDS 19356408 19356746 19356408 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
chr1.4 exon 19356787 19356819 19356787 ID=MS.gene061104.t1.exon10;Parent=MS.gene061104.t1
chr1.4 CDS 19356787 19356819 19356787 ID=cds.MS.gene061104.t1;Parent=MS.gene061104.t1
Gene Sequence

>MS.gene061104

ATGTGTCAAGTTGATAACTGCAAAGAAGATCTATCAAAAGCGAAGGATTATCATCGACGTCATAAGGTGTGTGAAGCTCATAGTAAAGCTTCTAAGGCTTTGTTAGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCGTTGGTGGAGTTTGATGAAGGGAAACGGAGTTGTAGACGGAGACTTGCTGGTCATAATCGGCGTCGGAGGAAAACGCAGCCGGATGAAGTGGCGGTTGGAGGTTCGCCGCCGTTGAATCAGGTTGCTGCTAATTTGGAGATTTTTAACTTGTTGACTGCTATTGCTGATGGTTCTCAAGGTTTGGTTTCTTTGTTTTTTTTTTTTTTTTGAAAGGTCAAGGTTTGGTTTCTATTTTTGGTTCAAAAATTAGTTTTTGATTTAATTTTGTTTGAATAGTAGTTTATATTACTATTTTGGTAGTTATTATGTAAATTTTAGAAATTTGAAACAAATATTTTGTTGGTATTTATTTGAAATAAATAAAAGTAATTTAAAAAAAAAGAAGTAAAAATTATGGTGAAATTGCTATATTTATCTGAAGAAGCTAATTAAGTAGTTCTTTTATAGCTAAATTTTGGATCAATAATGTTTTTTTTTTTTTTTTTTTTTTTGTGGTGTTAGGATCAATAATTTGTTTCTATAGATCAAATACGTTTTTAGTTTTTTTTAATAATTGGAACATGCCCTTGATTGTTATTTACTTTGAATTTTTTTGATCATGAATTGCAATAATTTTGATATTCAATAATTTAGAGATTAATTTTTTGAGATTTTTCAAGAAAGTTGAAGGTGTGTTGTATTTGTTTACTGGAATGAAAATAACTTTATCTTCAAAATCAGTTATGATTGTGAAAAATGTTTTTTTTTTTGTTGAGAAGCTACAGAAAGCAGCTTCTAATTTGAAACAGTTTTTAGACTTTTACCAAAAAAAAAAAAAAAACAGTTTTTAGACATTTTTTTTTTCTATCCTTTTTCAGATTCTCAATTTTTTGAAAATTTGCAAGAAACGAATGAAACTTCTAAAAGTGATAATTTTGTTAAAAAAACTCGATTTTTTCAAAATAAAATTTGTAAGATACAGACTCTAATTTATTTTTGAAAATTATTTTTCTTAATTTTCTAAAATCATTTCTGGGATAAATGAACAGAAACCAACAAGCAAATGCTACTTGTGATTGTTTTTCCTTTTCTTATGCGTGGGCTAAGATTGTTTGTGTTGATGATATTGTTTAGGAAAGTTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAGCAGCTTGTACAGATTCTGAATAGGATCCCTTTACCCGCTGATCTTACTGCAAAATTGCTGGATGTTGGTAATAATTTGAATGCGAAAAATGATAATGTCCAAATGCAAACTTCACCCTCCTATCATCATCGCGATGATCAACCAAACAACACCCCCCCTGCCCCGTTAACTAAGGATTTTCTTGCTGTTCTTTCCACAACTCCATCAACACCTGCTCAAAATGGCGGCAACGGGTCCACAAGTAGTGCAGATCATATGAGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGCTCGAGTTAAATTGCCGCTGCAACTTTTTGGCTCTTCTCCAGAAAACGACAGCCCATCGAAATTGCCATCTTCGCGAAAGTATTTTTCATCGGAAAGTAGTAATCCTGTGGATGAAAGGTCGCCGTCTTCATCTCCTCCTGTTGTGCAGATGAATTTTGGTCTGCAAGGTGGTATTAGAGGTCTCAATTCTAATGGTATTTTGACTGGATTTGGAGGCCATGCAAATAAGGAAACTAGCCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAACATGATTCAACAATCTAGTTCAGTTCAAAGTGTACCATTTAAAGCTGGTTATGCATCTTCGGGTTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGTTGGGATTTTGCAAACCCTGGTTCATGCTTGCTTTGAATTTGTACTTTGCTTTATATATGTTCTTATTCTTTTAATTAAGAGGCTTAGCCATTTTGTCTTTTGGGTTTTAATCTATTTGTGATGGTATTCCAACAGGATCGTACTGGGAGAATAATGTTTAAATTGTTTGACAAGCATCCTAGCCATTTCCCAGGAACGCTGCGAACACAGGTGAAATTATTGTTGCACTTTCCCATTAATATTTTGCGAATCGGATGATGTCATTTTAATGAATATGGCAAAATGTCCTTCGCCAGATGCAAAGACGTGTTAGTATTCATAATCATTTCGTCCTTTTCAGATTTACAATTGGCTTTCTACACGACCATCAGACTTGGAGAGTTACATAAGGCCCGGCTGTGTTGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGCTTGGGTGCAAGTAAGCGAACTTCTATGAATAGTGATGCACGTTTTGAGCTTGTAGAATTCTCCTTGCTGATTACTTGCATATTGTATTTTTTTGCAGTTAGAAGAAAACTTCGTCCAACGTGTTGATTCTTTAATTCATAACTCAGATTCTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCACACAAAGATGGTGAGCACTGTGACTAGTTTTGATTTCTGACTGGTTTCGATCACTTTTTTTTTATCTTAGGCCTCATATTTTTATATTCGTGCTTTAACTTTTGGAGGTTGTACTAATTTTCCCCCCTGTAATTGGATTGTTGATTACTGATTTTAAAACAAACTTTAGACGGTTAAATATGCCATCATAGCTAGATTTTTATTATCAAGGAGTTGAATCTGATAGATTTAAACTGAAATTCCAGGAAGGATACGCATGTGCAAACCATGGGGAACGTGGAGGTCTCCAGAGTTGATATCAGTGTCTCCTTTGGCTATTGTCGGTGGACAGGAGACTTCTATTTCATTGAAGGGAAGAAACCTCTCTGCTCCTGGCACAAAGTTAGTACTGATTTTCCCCTTTTCTGGACGTTGTGTTATGCTTCTTTCTGGTCTGTTCGCTTACTGTTTGTCCTAAATTTTGCAGGATTCATTGCACTGATGCTGACTGTTATACATCATCAGAAGTTATAGGATCAGGAGATCCTGGTATGGTCTATGATGAGATAAAATTGAGTGGTTTTGAAGTTCAGAATACATCTCCTAGTGTTCTAGGTCGCTGTTTCATTGAGGTATATCTCTACATTCTATTGACTGCACATGATTACTGTGATGGTTGCACTTGCATGTCTTGAAAATTTTCATGTACATGAAGTATATATTTGTGAACTTCTATTAAAAATAATAATTGCAACTTACATGTTTGTGAACAGGTTGAAAATGGTTTCAAGGGAAACAGTTTTCCAGTGATAATAGCCAATGCATCCATTTGCAAGGAGTTGAGACCGCTTGAGTCTGAATTTGACGAGGATGAAAAGATGTGTGATGCCATTTCAGAGGAGCATGAACATAATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTTTGAATGAGCTTGGTTGGCTGTTTCAAAGGGAAAGGTTCTCGAATGTGAACGAGGTTCCAGATTATTCGCTCGACAGGTTCAAATTTGTACTGATGTTTTCTGTGGAAAGAAACTGTTGCATGTTGGTCAAAACCCTTCTGGATATGCTGGTTGATAAACACTTCGAAGGAGAAGGGTTGTCAACAGGGTCAGTGGAGATGCTGAAAGCAATCCAACTTCTAAATAGAGCAGTGAAAAGAAAGTGCACAAGCATGGTTGATTTGCTCATTAACTATTCTATAACTAGCAAAAATGACACATCCAAGAAATATGTATTTCCACCGAATCTCGAGGGCCCTGGCGGTATTACTCCCTTGCATTTGGCAGCATCTACAACGGATTCTGAGGGTGTAATTGACTCTTTAACAAATGATCTACAGGAGGTAAATATTTCCCCCCTACTTTGACAAAAAAGTTACTAGAGGAAATGTCCCTCCTCATTCGGATTTACTGAATTGTTTTTGCTGAGTATCAAAAATAGTCTAATTGGATTGCCTATGGTTTTTATGGGGTTTAAATAGGTCATGCATGTCAGTCAACAGGGGGGGACATACTGCCTAGTCTATGTTAGGCCAGACTGTGTCACAGTTTTTTTTATAGACAAGTGGCTTTTTGAAAAGTCTATTTAGCTGAAAATGACAAGTTATTATACATATCTTATAAATCCTCTTGTGCCTAACAGGCTTGGCTATTTAAATAAATTTGAAGGATTTTTTTTATAATGTTGTCAAAAAGAAGAACAAAGGATTTTGATGTGTTAACAATCTAATACTTTATATCATTCTAAAGATTTAAGCATATCGACCTACATAAAAGAATTAAATCTATGAATTTTTTAGTGATAAATTTTGAAGACCTTATCAACCTTAAAGTATGTCCTTGTCAGCCTACTTAGAATATAAATCAGTAGTTATCATGTTGTTTGGACTTCAACTCATCCTTTTCTCTACAACTTGGGATTATATTTCAATTTACATTAATGATGTTTGCATGCTTCTATTTTATTGAGTCCTTGACTTCTTGTCTGTATTTTTTATGCTGGTGTGTAGATTGGGTTGAAGTGCTGGGAAACCCTTGTGGATGAAAACGGGCAGACTCCACATGCCTATGCCATGATGAGAAATAATCACTCTTATAATATGTTGGTTGCCCGTAAACGTTCCGATAGACAAAGAAGTGAAGTTTCAGTTAGAATTGATAATGAGATAGAGCACCCATCACCGGGAATTGAGCTAATGCAAAAGCGAATTAACCAAGTCAAACGAGTTGGGGACTCCTGTTCCAAGTGTGCAATTGCAGAAGTTCGCGCCAAAAGAAGATTTTCCGGTTCACGGAGCTGGCTTCACGGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTATTCCGTGGAACCCCTTATGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGA
Protein sequence

>MS.gene061104.t1

MCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLVEFDEGKRSCRRRLAGHNRRRRKTQPDEVAVGGSPPLNQVAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLNAKNDNVQMQTSPSYHHRDDQPNNTPPAPLTKDFLAVLSTTPSTPAQNGGNGSTSSADHMRERSSGSSQSPNDDSDCQEDARVKLPLQLFGSSPENDSPSKLPSSRKYFSSESSNPVDERSPSSSPPVVQMNFGLQGGIRGLNSNGILTGFGGHANKETSQSHSCTTIPLDLFKGSKSNNMIQQSSSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYASMSSAAWVQLEENFVQRVDSLIHNSDSDFWRNGRFLVYSGSQLASHKDGRIRMCKPWGTWRSPELISVSPLAIVGGQETSISLKGRNLSAPGTKIHCTDADCYTSSEVIGSGDPGMVYDEIKLSGFEVQNTSPSVLGRCFIEVENGFKGNSFPVIIANASICKELRPLESEFDEDEKMCDAISEEHEHNFGRPKSRDEALHFLNELGWLFQRERFSNVNEVPDYSLDRFKFVLMFSVERNCCMLVKTLLDMLVDKHFEGEGLSTGSVEMLKAIQLLNRAVKRKCTSMVDLLINYSITSKNDTSKKYVFPPNLEGPGGITPLHLAASTTDSEGVIDSLTNDLQEIGLKCWETLVDENGQTPHAYAMMRNNHSYNMLVARKRSDRQRSEVSVRIDNEIEHPSPGIELMQKRINQVKRVGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCAQFLPSGGKT