AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061195

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061195.t1 MTR_4g131600 71.107 578 36 5 1 447 4 581 0.0 755
MS.gene061195.t1 MTR_4g131580 54.291 571 125 6 1 435 1 571 0.0 548
MS.gene061195.t1 MTR_4g131570 56.369 369 84 3 141 435 207 572 1.78e-127 382
MS.gene061195.t1 MTR_4g131570 72.297 148 33 1 1 140 1 148 1.60e-65 221
MS.gene061195.t1 MTR_3g086100 45.455 286 78 5 17 236 13 286 6.73e-68 227
MS.gene061195.t1 MTR_3g102600 57.068 191 70 2 11 193 2 188 7.93e-68 216
MS.gene061195.t1 MTR_3g102600 56.989 186 68 2 11 188 2 183 1.04e-65 209
MS.gene061195.t1 MTR_8g079940 45.756 271 75 5 15 221 23 285 1.26e-64 218
MS.gene061195.t1 MTR_1g032570 45.783 249 66 3 17 196 11 259 2.09e-64 219
MS.gene061195.t1 MTR_1g013180 40.374 374 130 10 13 309 152 509 6.14e-64 219
MS.gene061195.t1 MTR_2g034960 46.371 248 71 3 11 196 23 270 6.34e-64 218
MS.gene061195.t1 MTR_7g117705 41.558 308 108 6 13 252 1 304 1.51e-63 213
MS.gene061195.t1 MTR_3g102590 56.614 189 67 2 17 190 8 196 1.02e-61 201
MS.gene061195.t1 MTR_3g102590 56.757 185 65 2 17 186 8 192 3.67e-59 193
MS.gene061195.t1 MTR_3g102600 57.343 143 49 2 59 193 1 139 7.06e-51 171
MS.gene061195.t1 MTR_3g106220 63.504 137 41 2 14 141 5 141 1.12e-49 179
MS.gene061195.t1 MTR_3g106220 69.643 56 17 0 141 196 202 257 2.09e-18 88.6
MS.gene061195.t1 MTR_2g450070 59.732 149 51 2 2 141 3 151 6.76e-49 177
MS.gene061195.t1 MTR_2g450070 29.621 422 152 15 141 427 217 628 5.76e-27 114
MS.gene061195.t1 MTR_2g450070 59.732 149 51 2 2 141 3 151 9.40e-49 177
MS.gene061195.t1 MTR_2g450070 29.621 422 152 15 141 427 217 628 5.45e-27 114
MS.gene061195.t1 MTR_3g102600 57.246 138 47 2 59 188 1 134 1.06e-48 164
MS.gene061195.t1 MTR_4g121020 62.590 139 40 3 14 140 25 163 3.52e-47 173
MS.gene061195.t1 MTR_4g121020 55.556 81 32 2 141 219 219 297 4.88e-17 84.3
MS.gene061195.t1 MTR_4g121020 62.590 139 40 3 14 140 25 163 3.77e-47 173
MS.gene061195.t1 MTR_4g121020 55.556 81 32 2 141 219 219 297 5.05e-17 84.3
MS.gene061195.t1 MTR_1g013170 60.294 136 46 1 13 140 1 136 1.17e-46 169
MS.gene061195.t1 MTR_1g013170 65.079 63 18 1 141 199 195 257 8.02e-17 83.2
MS.gene061195.t1 MTR_4g021790 36.214 243 109 4 17 220 10 245 6.56e-41 147
MS.gene061195.t1 MTR_4g021760 34.667 225 107 3 16 201 10 233 1.28e-40 148
MS.gene061195.t1 MTR_4g021855 37.500 216 95 3 17 193 10 224 1.01e-39 145
MS.gene061195.t1 MTR_1g032570 42.632 190 40 3 76 196 1 190 4.68e-39 149
MS.gene061195.t1 MTR_3g086100 40.088 227 58 5 76 236 1 215 2.43e-38 146
MS.gene061195.t1 MTR_4g021845 37.143 210 92 4 16 186 9 217 1.37e-37 137
MS.gene061195.t1 MTR_6g045327 31.154 260 130 6 11 225 8 263 8.79e-36 137
MS.gene061195.t1 MTR_5g055260 39.247 186 98 6 17 189 10 193 1.09e-33 127
MS.gene061195.t1 MTR_8g105600 32.911 237 99 4 13 190 5 240 1.14e-30 125
MS.gene061195.t1 MTR_0450s0040 33.333 228 105 5 19 201 6 231 1.30e-29 119
MS.gene061195.t1 MTR_7g026400 32.301 226 89 5 47 221 17 229 9.97e-25 107
MS.gene061195.t1 MTR_8g093040 31.132 212 107 5 13 193 10 213 5.10e-22 95.9
MS.gene061195.t1 MTR_6g016850 33.813 139 81 2 13 141 5 142 5.83e-21 90.1
MS.gene061195.t1 MTR_1g013160 60.000 70 20 1 79 140 1 70 1.47e-20 88.6
MS.gene061195.t1 MTR_3g092780 34.646 127 70 3 21 135 56 181 5.63e-18 87.0
MS.gene061195.t1 MTR_3g092780 34.646 127 70 3 21 135 56 181 5.68e-18 87.4
MS.gene061195.t1 MTR_3g092780 34.677 124 68 3 21 132 56 178 2.14e-17 85.5
MS.gene061195.t1 MTR_3g092780 34.677 124 68 3 21 132 56 178 2.20e-17 85.5
MS.gene061195.t1 MTR_4g121020 55.556 81 32 2 141 219 115 193 4.37e-17 84.3
MS.gene061195.t1 MTR_7g118260 33.835 133 71 3 18 136 11 140 6.94e-17 83.6
MS.gene061195.t1 MTR_7g118260 34.375 128 67 3 18 131 11 135 1.47e-16 82.4
MS.gene061195.t1 MTR_4g061360 34.426 122 69 1 21 131 89 210 1.92e-15 79.3
MS.gene061195.t1 MTR_4g023980 32.117 137 54 3 63 160 35 171 6.89e-15 73.2
MS.gene061195.t1 MTR_4g098870 46.988 83 34 1 127 199 300 382 1.01e-14 77.0
MS.gene061195.t1 MTR_4g098870 32.258 124 72 3 17 131 14 134 9.37e-11 64.3
MS.gene061195.t1 MTR_4g098870 40.541 111 54 2 127 225 300 410 1.09e-14 76.6
MS.gene061195.t1 MTR_4g098870 46.988 83 34 1 127 199 320 402 1.19e-14 76.6
MS.gene061195.t1 MTR_4g098870 46.988 83 34 1 127 199 339 421 1.20e-14 76.6
MS.gene061195.t1 MTR_4g098870 46.988 83 34 1 127 199 320 402 1.31e-14 76.6
MS.gene061195.t1 MTR_5g014040 37.398 123 52 4 142 253 316 424 2.18e-14 75.9
MS.gene061195.t1 MTR_5g014040 33.813 139 77 5 9 136 5 139 1.56e-12 70.1
MS.gene061195.t1 MTR_4g064730 47.368 76 40 0 118 193 112 187 2.89e-14 73.9
MS.gene061195.t1 MTR_1g067110 32.000 125 68 2 21 131 85 206 8.25e-14 74.3
MS.gene061195.t1 MTR_1g067110 32.000 125 68 2 21 131 85 206 9.13e-14 74.3
MS.gene061195.t1 MTR_8g024260 31.496 127 72 3 23 136 38 162 1.57e-13 73.2
MS.gene061195.t1 MTR_3g037390 28.571 133 82 2 13 132 14 146 2.49e-13 72.4
MS.gene061195.t1 MTR_7g089010 53.448 58 27 0 136 193 90 147 4.24e-13 70.1
MS.gene061195.t1 MTR_5g014040 33.813 139 77 5 9 136 5 139 1.66e-12 69.7
MS.gene061195.t1 MTR_5g014040 36.364 121 61 4 142 253 316 429 1.95e-12 69.7
MS.gene061195.t1 MTR_5g014040 36.364 121 61 4 142 253 276 389 1.84e-12 69.7
MS.gene061195.t1 MTR_4g078810 39.759 83 49 1 142 223 163 245 3.39e-12 68.6
MS.gene061195.t1 MTR_4g108880 27.273 132 83 2 14 132 24 155 3.46e-12 68.9
MS.gene061195.t1 MTR_4g086835 47.458 59 31 0 135 193 272 330 5.02e-12 67.8
MS.gene061195.t1 MTR_2g090675 53.704 54 25 0 142 195 166 219 5.40e-12 67.8
MS.gene061195.t1 MTR_1g093080 45.312 64 34 1 131 193 205 268 8.21e-12 67.0
MS.gene061195.t1 MTR_8g032710 28.571 126 81 2 19 135 19 144 1.45e-11 66.6
MS.gene061195.t1 MTR_0223s0040 38.971 136 61 5 128 250 9 135 2.81e-11 64.7
MS.gene061195.t1 MTR_2g023580 44.118 102 49 3 128 226 46 142 3.33e-11 63.5
MS.gene061195.t1 MTR_5g017980 45.763 59 32 0 135 193 191 249 4.56e-11 64.3
MS.gene061195.t1 MTR_5g017980 45.763 59 32 0 135 193 190 248 4.57e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061195.t1 AT2G25180 51.653 242 55 3 17 196 13 254 3.31e-69 231
MS.gene061195.t1 AT4G31920 51.464 239 61 4 17 205 13 246 8.79e-68 226
MS.gene061195.t1 AT5G58080 48.638 257 66 6 7 201 3 255 2.36e-61 211
MS.gene061195.t1 AT1G67710 64.844 128 36 2 16 134 5 132 3.37e-48 173
MS.gene061195.t1 AT1G67710 64.516 62 18 2 141 201 197 255 1.05e-15 79.7
MS.gene061195.t1 AT3G16857 58.647 133 47 1 8 132 24 156 1.74e-43 162
MS.gene061195.t1 AT3G16857 66.071 56 19 0 141 196 241 296 1.27e-16 83.2
MS.gene061195.t1 AT3G16857 58.647 133 47 1 8 132 24 156 2.31e-43 162
MS.gene061195.t1 AT3G16857 66.071 56 19 0 141 196 241 296 1.28e-16 83.2
MS.gene061195.t1 AT2G01760 54.815 135 52 2 13 138 3 137 3.50e-40 149
MS.gene061195.t1 AT2G01760 59.375 64 26 0 135 198 198 261 7.93e-17 82.4
MS.gene061195.t1 AT2G01760 46.541 159 48 3 17 138 7 165 2.52e-34 133
MS.gene061195.t1 AT2G01760 59.375 64 26 0 135 198 226 289 8.61e-17 82.8
MS.gene061195.t1 AT5G49240 33.610 241 95 5 11 186 32 272 2.50e-31 122
MS.gene061195.t1 AT3G16857 64.706 85 22 1 56 132 2 86 6.94e-28 117
MS.gene061195.t1 AT3G16857 67.273 55 18 0 141 195 171 225 1.15e-16 83.2
MS.gene061195.t1 AT3G62670 34.348 230 86 6 22 189 42 268 2.76e-26 110
MS.gene061195.t1 AT1G49190 27.236 246 110 6 17 193 30 275 7.71e-23 100
MS.gene061195.t1 AT1G67710 65.672 67 15 1 76 134 1 67 2.42e-21 96.7
MS.gene061195.t1 AT1G67710 62.500 64 20 2 141 203 132 192 7.57e-16 80.1
MS.gene061195.t1 AT1G49190 35.200 125 73 1 17 133 30 154 1.06e-18 89.4
MS.gene061195.t1 AT2G01760 58.333 72 21 2 76 138 1 72 3.25e-18 85.9
MS.gene061195.t1 AT2G01760 59.375 64 26 0 135 198 133 196 4.79e-17 82.4
MS.gene061195.t1 AT2G46790 35.772 123 66 3 21 131 37 158 3.40e-17 84.0
MS.gene061195.t1 AT2G46790 35.772 123 66 3 21 131 37 158 4.70e-17 84.0
MS.gene061195.t1 AT5G24470 33.600 125 70 3 20 132 49 172 1.18e-16 82.8
MS.gene061195.t1 AT1G67710 62.500 64 20 2 141 203 123 183 6.43e-16 80.1
MS.gene061195.t1 AT5G60100 35.246 122 68 1 21 131 64 185 2.57e-15 78.2
MS.gene061195.t1 AT5G60100 35.246 122 68 1 21 131 64 185 2.57e-15 78.2
MS.gene061195.t1 AT5G60100 35.246 122 68 1 21 131 64 185 2.57e-15 78.2
MS.gene061195.t1 AT5G60100 35.246 122 68 1 21 131 64 185 4.68e-15 77.8
MS.gene061195.t1 AT5G60100 35.246 122 68 1 21 131 64 185 4.68e-15 77.8
MS.gene061195.t1 AT5G60100 35.246 122 68 1 21 131 64 185 4.68e-15 77.8
MS.gene061195.t1 AT5G60100 35.246 122 68 1 21 131 64 185 6.48e-15 77.4
MS.gene061195.t1 AT5G59570 46.667 90 43 2 135 224 139 223 2.03e-14 74.3
MS.gene061195.t1 AT5G59570 46.667 90 43 2 135 224 139 223 2.03e-14 74.3
MS.gene061195.t1 AT3G46640 56.364 55 24 0 141 195 148 202 6.60e-14 73.2
MS.gene061195.t1 AT3G46640 56.364 55 24 0 141 195 148 202 6.60e-14 73.2
MS.gene061195.t1 AT3G46640 58.491 53 22 0 141 193 148 200 9.10e-14 72.8
MS.gene061195.t1 AT2G40970 53.448 58 27 0 136 193 104 161 9.26e-14 71.6
MS.gene061195.t1 AT5G07210 43.956 91 37 2 122 205 222 305 1.31e-13 73.6
MS.gene061195.t1 AT5G07210 43.956 91 37 2 122 205 214 297 1.38e-13 73.6
MS.gene061195.t1 AT5G07210 30.894 123 78 2 21 136 16 138 5.13e-11 65.5
MS.gene061195.t1 AT5G05090 56.604 53 23 0 141 193 85 137 1.56e-13 71.2
MS.gene061195.t1 AT3G10760 56.604 53 23 0 141 193 109 161 2.22e-13 71.6
MS.gene061195.t1 AT5G44190 64.583 48 17 0 142 189 152 199 3.07e-13 71.6
MS.gene061195.t1 AT5G44190 64.583 48 17 0 142 189 152 199 3.13e-13 71.2
MS.gene061195.t1 AT4G37180 51.613 62 29 1 133 193 206 267 1.24e-12 69.3
MS.gene061195.t1 AT4G37180 51.613 62 29 1 133 193 213 274 1.34e-12 69.3
MS.gene061195.t1 AT5G02810 31.967 122 72 2 21 131 78 199 1.46e-12 70.5
MS.gene061195.t1 AT5G61380 28.788 132 81 2 14 132 10 141 1.79e-12 70.1
MS.gene061195.t1 AT2G20570 55.556 63 27 1 134 195 149 211 1.84e-12 69.3
MS.gene061195.t1 AT2G20570 45.455 77 31 1 130 195 151 227 2.37e-12 68.9
MS.gene061195.t1 AT2G27070 35.593 118 56 3 142 249 230 337 4.03e-12 68.9
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.18e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.18e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.18e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.18e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.18e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.18e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.25e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.25e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.25e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.25e-11 65.5
MS.gene061195.t1 AT4G18020 51.667 60 22 1 130 189 296 348 4.25e-11 65.5

Find 95 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATTGGTGTCTCGAAAT+TGG 0.196977 8.4:-1969607 None:intergenic
GATTATCTTGCTTCTTCTAA+TGG 0.232806 8.4:+1970163 MS.gene061195:CDS
CCACTTCTGACAGGGTTAAA+AGG 0.242635 8.4:-1969906 None:intergenic
GGACTTAAATTAATGTTATC+AGG 0.249835 8.4:-1969711 None:intergenic
TAGATGGAGAAATACAATTT+AGG 0.313817 8.4:+1970507 MS.gene061195:CDS
CAATGTCAAGATGGCTTACT+TGG 0.323761 8.4:+1970073 MS.gene061195:CDS
TGATTAATGAACTATTAGTT+TGG 0.331944 8.4:-1970216 None:intergenic
CCCGGCGGGTATGCGTGTTC+TGG 0.339385 8.4:+1966569 MS.gene061195:CDS
CTCACTCAATGGAACAGAAT+TGG 0.343212 8.4:-1969946 None:intergenic
AGACATCGTTGCTGTTCCTT+TGG 0.355803 8.4:+1970039 MS.gene061195:intron
GATAAATATTCTGCTGAAAC+TGG 0.368030 8.4:-1969686 None:intergenic
CTTCTCACATGCAACTATAA+TGG 0.375217 8.4:+1966636 MS.gene061195:CDS
GTTTCTGCAGTTAATCTTGT+CGG 0.381222 8.4:+1969002 MS.gene061195:CDS
TATCAAATGGCTATCTAAAC+AGG 0.381598 8.4:+1969399 MS.gene061195:CDS
CATCGTTGCTGTTCCTTTGG+AGG 0.383670 8.4:+1970042 MS.gene061195:CDS
AACATTGGTGTCTCGAAATT+GGG 0.390536 8.4:-1969606 None:intergenic
ATAAATCACTCTCCTGTTGA+AGG 0.396905 8.4:+1969864 MS.gene061195:CDS
GATTAATGAACTATTAGTTT+GGG 0.399970 8.4:-1970215 None:intergenic
TCAGCAAGTCGGACTTGAAA+TGG 0.400458 8.4:+1968531 MS.gene061195:CDS
TCCAGCACTTTGAGATAAGT+TGG 0.404451 8.4:-1966606 None:intergenic
AAATGTATCCAGCCATTTGC+AGG 0.408981 8.4:+1969199 MS.gene061195:CDS
ACTGCATTTGAATCATCAAT+TGG 0.413674 8.4:-1969732 None:intergenic
TCAAGTTGAGAAGTTCTATT+CGG 0.435476 8.4:+1970249 MS.gene061195:CDS
ATATAATTTGTACCTGCAAA+TGG 0.440246 8.4:-1969211 None:intergenic
TTCACAGCAGAACCTTCAAC+AGG 0.443727 8.4:-1969876 None:intergenic
TGAATTGTTGAGAGAAAAGA+AGG 0.450895 8.4:+1968447 MS.gene061195:CDS
AGCTTGAAGCCATCCATGTC+TGG 0.455651 8.4:-1968505 None:intergenic
GAGAAGTTCTATTCGGATCA+AGG 0.456955 8.4:+1970256 MS.gene061195:CDS
ATTCTAGTTCATGATGGTTG+TGG 0.457111 8.4:+1966506 None:intergenic
ACATGGCATTCAAACGTCAA+TGG 0.462461 8.4:+1969656 MS.gene061195:CDS
GGAAGTTATTACCCCTGTCT+TGG 0.462540 8.4:+1970544 MS.gene061195:CDS
AGAATTGGAAGCAAAGTTAG+AGG 0.465879 8.4:-1969931 None:intergenic
AATGAGACGCAATTGATAGA+TGG 0.469564 8.4:+1970491 MS.gene061195:CDS
CATTGCATCGTTTCCTCCAA+AGG 0.471428 8.4:-1970055 None:intergenic
TACTACAACTACGAAGTCAT+TGG 0.471545 8.4:+1968417 MS.gene061195:CDS
GATACAGAATTGATATCAAA+TGG 0.472061 8.4:+1969386 MS.gene061195:CDS
TGACAGTGGCTCTGATGTCT+TGG 0.472341 8.4:-1969773 None:intergenic
CTTGACTTGATGAATGTTGA+AGG 0.474751 8.4:+1969164 MS.gene061195:CDS
TTAAGCTCTTCCATTCGAAT+CGG 0.481435 8.4:-1968736 None:intergenic
CAAGGAATCATGGAATCAAA+TGG 0.482889 8.4:+1970274 MS.gene061195:CDS
TTCCTCCTTCAACAATACCT+TGG 0.487555 8.4:+1970141 MS.gene061195:CDS
AATTTGTACCTGCAAATGGC+TGG 0.488638 8.4:-1969207 None:intergenic
TGGAAGAGCTTAAGAGCATA+TGG 0.489491 8.4:+1968746 MS.gene061195:CDS
GTTGGATCCCTACCAGCAAA+AGG 0.495630 8.4:+1969438 MS.gene061195:CDS
CGATGAAACGACTCCAAGAC+AGG 0.496691 8.4:-1970557 None:intergenic
TGAATGTTGAAGGGCTTACA+AGG 0.497287 8.4:+1969174 MS.gene061195:CDS
TAGAAAGAAGATTGAAAGCA+AGG 0.500776 8.4:+1968780 MS.gene061195:CDS
TTAGAGGAACCACTTCTGAC+AGG 0.501081 8.4:-1969915 None:intergenic
ATAATCCAAGGTATTGTTGA+AGG 0.508220 8.4:-1970146 None:intergenic
GAAAGCAAGGATCAAAATCA+AGG 0.515217 8.4:+1968793 MS.gene061195:CDS
AATGCAGTTACAGATTCCTC+TGG 0.518088 8.4:+1969747 MS.gene061195:CDS
CTTTCACTTTCAGAAAACAT+TGG 0.525109 8.4:-1969621 None:intergenic
TCCAACTTATCTCAAAGTGC+TGG 0.528445 8.4:+1966605 MS.gene061195:CDS
TGGCTATCTAAACAGGATAG+AGG 0.531559 8.4:+1969406 MS.gene061195:CDS
TGCTAACATCACTAATTACA+AGG 0.543736 8.4:-1968480 None:intergenic
CTATTCGGATCAAGGAATCA+TGG 0.544673 8.4:+1970264 MS.gene061195:CDS
GCCAGAACACGCATACCCGC+CGG 0.553676 8.4:-1966570 None:intergenic
ATGGTTGTGGAGGATAGTTT+CGG 0.554649 8.4:+1966519 MS.gene061195:CDS
TTAGGAGAAGGTTTCCCGGC+GGG 0.561505 8.4:+1966555 MS.gene061195:CDS
TAATGGAGACACTAGTTCCA+TGG 0.565315 8.4:+1970180 MS.gene061195:CDS
CCAGAACACGCATACCCGCC+GGG 0.571213 8.4:-1966569 None:intergenic
TTTCAAGTCCGACTTGCTGA+AGG 0.572445 8.4:-1968528 None:intergenic
TTGGATCCCTACCAGCAAAA+GGG 0.576563 8.4:+1969439 MS.gene061195:CDS
TTGACTTGATGAATGTTGAA+GGG 0.580486 8.4:+1969165 MS.gene061195:CDS
GAAACGATGCAATGTCAAGA+TGG 0.582127 8.4:+1970064 MS.gene061195:CDS
GGATAGAGGAGATGATGCGT+TGG 0.582696 8.4:+1969420 MS.gene061195:CDS
TTGGGCTAAACTTTGTACCA+TGG 0.585108 8.4:-1970197 None:intergenic
GAAAGTTCGAGTTCTTTACA+TGG 0.585974 8.4:+1969639 MS.gene061195:CDS
TTCAAGCTCCTTCAGCAAGT+CGG 0.589889 8.4:+1968520 MS.gene061195:CDS
AACATTTGCATTATTGACAG+TGG 0.591551 8.4:-1969787 None:intergenic
CTAGTTCATGATGGTTGTGG+AGG 0.595087 8.4:+1966509 None:intergenic
AGAAGAAGCAAGATAATCCA+AGG 0.597269 8.4:-1970158 None:intergenic
TGATGTTAGCATGCCAGACA+TGG 0.598210 8.4:+1968492 MS.gene061195:CDS
TCTAGTGAAACCGATTCGAA+TGG 0.598674 8.4:+1968726 MS.gene061195:CDS
GACAGGGGTAATAACTTCCA+CGG 0.600059 8.4:-1970540 None:intergenic
ATGTTATGAGACTGAAGTGG+AGG 0.606395 8.4:-1969582 None:intergenic
GAATAGAACTTCTCAACTTG+AGG 0.607973 8.4:-1970247 None:intergenic
AATGTCAAGATGGCTTACTT+GGG 0.618703 8.4:+1970074 MS.gene061195:CDS
TACCAGCAAAAGGGTTCAGT+AGG 0.620378 8.4:+1969448 MS.gene061195:CDS
TAGAGGAACCACTTCTGACA+GGG 0.620617 8.4:-1969914 None:intergenic
ATCCAAGGTATTGTTGAAGG+AGG 0.626426 8.4:-1970143 None:intergenic
GTCACATAAACTCACTGTCA+AGG 0.629956 8.4:-1969025 None:intergenic
ATTTAGGAGCATCAAAGCCG+TGG 0.634327 8.4:+1970523 MS.gene061195:CDS
TGTGTGAGCTTACTGATGAA+AGG 0.640199 8.4:-1968559 None:intergenic
TCTGATGTCTTGGAAGCCAG+AGG 0.643398 8.4:-1969763 None:intergenic
CTTAAATTAATGTTATCAGG+CGG 0.647690 8.4:-1969708 None:intergenic
GATGAAACGACTCCAAGACA+GGG 0.649974 8.4:-1970556 None:intergenic
GTTAGCATGCCAGACATGGA+TGG 0.657571 8.4:+1968496 MS.gene061195:CDS
TGAGCTTACTGATGAAAGGT+AGG 0.657693 8.4:-1968555 None:intergenic
GTGATGAAGAGTGTGATACA+TGG 0.658673 8.4:+1968691 MS.gene061195:CDS
TGTTATGAGACTGAAGTGGA+GGG 0.664363 8.4:-1969581 None:intergenic
GGAATGTTATGAGACTGAAG+TGG 0.672395 8.4:-1969585 None:intergenic
GAATGTTGAAGGGCTTACAA+GGG 0.675399 8.4:+1969175 MS.gene061195:CDS
ATGAAACGACTCCAAGACAG+GGG 0.737951 8.4:-1970555 None:intergenic
TTTAGGAGAAGGTTTCCCGG+CGG 0.790759 8.4:+1966554 MS.gene061195:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAAAGAAATCAATA+TGG - chr8.4:1970441-1970460 None:intergenic 10.0%
!!! TAAAAAAATCTAAAACAAAA+GGG + chr8.4:1968128-1968147 MS.gene061195:intron 10.0%
!!! TTAAAAAAATCTAAAACAAA+AGG + chr8.4:1968127-1968146 MS.gene061195:intron 10.0%
!!! TTTTTATGATAGTAAATAAA+TGG - chr8.4:1967896-1967915 None:intergenic 10.0%
!! AAATAAATGGAAATTATCTT+CGG - chr8.4:1967883-1967902 None:intergenic 15.0%
!! CAATTTACTAAAAAAAACTA+AGG - chr8.4:1966818-1966837 None:intergenic 15.0%
!!! CTTAGTTTTTTTTAGTAAAT+TGG + chr8.4:1966816-1966835 MS.gene061195:intron 15.0%
!!! TTTTTTTCTTTGTTTTTTTG+AGG - chr8.4:1967687-1967706 None:intergenic 15.0%
!! AAATATCCGAATATAAGAAA+TGG - chr8.4:1968624-1968643 None:intergenic 20.0%
!! AATGATTATTACTGCTTTAT+TGG + chr8.4:1968193-1968212 MS.gene061195:intron 20.0%
!! ATAAGAAATGGATCTTAATT+AGG - chr8.4:1968612-1968631 None:intergenic 20.0%
!! GAAGAGACATTTAAATAAAA+AGG - chr8.4:1968357-1968376 None:intergenic 20.0%
!! TAAGATCCATTTCTTATATT+CGG + chr8.4:1968615-1968634 MS.gene061195:intron 20.0%
!! TGATGAATGATTCTTAAATA+TGG + chr8.4:1969077-1969096 MS.gene061195:intron 20.0%
!! TGATTAATGAACTATTAGTT+TGG - chr8.4:1970219-1970238 None:intergenic 20.0%
!!! AAACCTTTTTTTTTTCTTTG+AGG + chr8.4:1966777-1966796 MS.gene061195:intron 20.0%
!!! ATGATTATTACTGCTTTATT+GGG + chr8.4:1968194-1968213 MS.gene061195:intron 20.0%
!!! ATTCTTGTTAGCAATATTTT+CGG - chr8.4:1968857-1968876 None:intergenic 20.0%
!!! GATTAATGAACTATTAGTTT+GGG - chr8.4:1970218-1970237 None:intergenic 20.0%
!!! TTTGAGATTTTTTGACAAAA+GGG - chr8.4:1969245-1969264 None:intergenic 20.0%
!!! TTTTTAGTAAATTGGTGATT+AGG + chr8.4:1966824-1966843 MS.gene061195:intron 20.0%
! AAAAAAATCACTAACATGTC+AGG - chr8.4:1968220-1968239 None:intergenic 25.0%
! AACTACAACCTATTTATCAT+AGG + chr8.4:1967536-1967555 MS.gene061195:intron 25.0%
! AAGTTACTCAATAGTTATAG+TGG - chr8.4:1967066-1967085 None:intergenic 25.0%
! ACACCAATAAAACTTATTTG+TGG + chr8.4:1966890-1966909 MS.gene061195:intron 25.0%
! AGTGTATATTTATGCTTCAT+AGG + chr8.4:1967626-1967645 MS.gene061195:intron 25.0%
! AGTTGAAGAAACTACATATT+AGG - chr8.4:1969114-1969133 None:intergenic 25.0%
! ATTGAATGAACGAAAAAGAA+AGG - chr8.4:1966669-1966688 None:intergenic 25.0%
! CTTAAATTAATGTTATCAGG+CGG - chr8.4:1969711-1969730 None:intergenic 25.0%
! GATACAGAATTGATATCAAA+TGG + chr8.4:1969386-1969405 MS.gene061195:CDS 25.0%
! GGACTTAAATTAATGTTATC+AGG - chr8.4:1969714-1969733 None:intergenic 25.0%
! GTTCTAGTATGATTTAAACA+TGG - chr8.4:1967513-1967532 None:intergenic 25.0%
! TGAAATTCTATTTATGATGC+AGG + chr8.4:1970464-1970483 MS.gene061195:intron 25.0%
! TTACATAGCCTATGATAAAT+AGG - chr8.4:1967547-1967566 None:intergenic 25.0%
!! AATTTTCATATGAGAATTGC+TGG + chr8.4:1968307-1968326 MS.gene061195:intron 25.0%
!! ATATAATTTGTACCTGCAAA+TGG - chr8.4:1969214-1969233 None:intergenic 25.0%
!! ATCAAGTCAAGTATTTTCTT+AGG - chr8.4:1969155-1969174 None:intergenic 25.0%
!! GGTCTTTTATATAATAATGC+TGG + chr8.4:1968328-1968347 MS.gene061195:intron 25.0%
!! TGAGATGTGTTACAATTTTT+AGG - chr8.4:1967329-1967348 None:intergenic 25.0%
!!! CAAAACAGATTTTAAGAGAA+AGG - chr8.4:1968585-1968604 None:intergenic 25.0%
!!! GTTTGAGATTTTTTGACAAA+AGG - chr8.4:1969246-1969265 None:intergenic 25.0%
!!! TTGAATAACTTTTCGATTTG+AGG + chr8.4:1967994-1968013 MS.gene061195:intron 25.0%
AACATTTGCATTATTGACAG+TGG - chr8.4:1969790-1969809 None:intergenic 30.0%
AATAAGTGAAGTGGTTAAAC+AGG + chr8.4:1970367-1970386 MS.gene061195:intron 30.0%
ACGCCTCAAAGAAAAAAAAA+AGG - chr8.4:1966783-1966802 None:intergenic 30.0%
ACTCAATAGTTATAGTGGTA+CGG - chr8.4:1967061-1967080 None:intergenic 30.0%
ACTGCATTTGAATCATCAAT+TGG - chr8.4:1969735-1969754 None:intergenic 30.0%
ATAGGCTATGTAAATGTATC+CGG + chr8.4:1967554-1967573 MS.gene061195:intron 30.0%
ATCCTAATAGTGTTTCTCTA+AGG + chr8.4:1967147-1967166 MS.gene061195:intron 30.0%
ATGTAGAGAGTAGAAAAACA+AGG - chr8.4:1967259-1967278 None:intergenic 30.0%
CAACGGTTGTAAACATATAT+TGG + chr8.4:1966735-1966754 MS.gene061195:intron 30.0%
CTTTCACTTTCAGAAAACAT+TGG - chr8.4:1969624-1969643 None:intergenic 30.0%
CTTTGGCAAAAGAATGAATT+AGG - chr8.4:1967095-1967114 None:intergenic 30.0%
GATAAATATTCTGCTGAAAC+TGG - chr8.4:1969689-1969708 None:intergenic 30.0%
GATTATCTTGCTTCTTCTAA+TGG + chr8.4:1970163-1970182 MS.gene061195:CDS 30.0%
GGTAAATGATGATATAGAGA+AGG + chr8.4:1968669-1968688 MS.gene061195:intron 30.0%
TAAACCTTGTATCAGATGAA+AGG - chr8.4:1967288-1967307 None:intergenic 30.0%
TAGAAACCACAACAAAACTA+GGG - chr8.4:1967233-1967252 None:intergenic 30.0%
TAGAAAGAAGATTGAAAGCA+AGG + chr8.4:1968780-1968799 MS.gene061195:CDS 30.0%
TATCAAATGGCTATCTAAAC+AGG + chr8.4:1969399-1969418 MS.gene061195:CDS 30.0%
TCAAAACCACACCTAAAATT+GGG + chr8.4:1967440-1967459 MS.gene061195:intron 30.0%
TGAATTGTTGAGAGAAAAGA+AGG + chr8.4:1968447-1968466 MS.gene061195:CDS 30.0%
TGATTTAAACATGGTGTTTC+TGG - chr8.4:1967504-1967523 None:intergenic 30.0%
TGCAATCGAAAATGAAAATG+AGG - chr8.4:1969364-1969383 None:intergenic 30.0%
TGCTAACATCACTAATTACA+AGG - chr8.4:1968483-1968502 None:intergenic 30.0%
TGTAGAGAGTAGAAAAACAA+GGG - chr8.4:1967258-1967277 None:intergenic 30.0%
TTAGAAACCACAACAAAACT+AGG - chr8.4:1967234-1967253 None:intergenic 30.0%
TTCTTCAACTATTATTGCAG+AGG + chr8.4:1969124-1969143 MS.gene061195:intron 30.0%
TTGTTAAAATCCTCACTCAA+TGG - chr8.4:1969960-1969979 None:intergenic 30.0%
TTTCAACCGTATTTGCAAAA+AGG - chr8.4:1969294-1969313 None:intergenic 30.0%
! AAAAAGAAAGGTACAAAGTG+AGG + chr8.4:1968890-1968909 MS.gene061195:intron 30.0%
! AATCAAGGTATCATTAGTGA+TGG + chr8.4:1968808-1968827 MS.gene061195:intron 30.0%
! ATCAAGGTATCATTAGTGAT+GGG + chr8.4:1968809-1968828 MS.gene061195:intron 30.0%
! CAAAAATTTGTTTGTTCCGT+CGG + chr8.4:1966998-1967017 MS.gene061195:intron 30.0%
! CTTTTGCATTCAGAAAAAGA+AGG - chr8.4:1968247-1968266 None:intergenic 30.0%
! TAAATCACTAGCTTGATTCT+TGG + chr8.4:1968379-1968398 MS.gene061195:intron 30.0%
! TTGACTTGATGAATGTTGAA+GGG + chr8.4:1969165-1969184 MS.gene061195:CDS 30.0%
! TTTTGATGTTGTGAGTAACA+TGG - chr8.4:1970115-1970134 None:intergenic 30.0%
!! ATAATCCAAGGTATTGTTGA+AGG - chr8.4:1970149-1970168 None:intergenic 30.0%
!! GCTCCACAAATAAGTTTTAT+TGG - chr8.4:1966896-1966915 None:intergenic 30.0%
!! TCAAGTTGAGAAGTTCTATT+CGG + chr8.4:1970249-1970268 MS.gene061195:CDS 30.0%
!! TTGGAAGTAGCTTTGATATA+AGG + chr8.4:1966754-1966773 MS.gene061195:intron 30.0%
AAAAGAAGCCTCGTTTAGTT+TGG + chr8.4:1968955-1968974 MS.gene061195:intron 35.0%
AAACGCATGGACAAAAAGAA+AGG + chr8.4:1968878-1968897 MS.gene061195:intron 35.0%
AATGAGACGCAATTGATAGA+TGG + chr8.4:1970491-1970510 MS.gene061195:CDS 35.0%
AATGTCAAGATGGCTTACTT+GGG + chr8.4:1970074-1970093 MS.gene061195:CDS 35.0%
ACTATTAGGATTGAGTCTCT+TGG - chr8.4:1967138-1967157 None:intergenic 35.0%
AGAAGAAGCAAGATAATCCA+AGG - chr8.4:1970161-1970180 None:intergenic 35.0%
AGAATTGGAAGCAAAGTTAG+AGG - chr8.4:1969934-1969953 None:intergenic 35.0%
ATAAATCACTCTCCTGTTGA+AGG + chr8.4:1969864-1969883 MS.gene061195:CDS 35.0%
CAAGGAATCATGGAATCAAA+TGG + chr8.4:1970274-1970293 MS.gene061195:CDS 35.0%
CACCTTAGAGAAACACTATT+AGG - chr8.4:1967152-1967171 None:intergenic 35.0%
CACTAATACATATCAGACTC+CGG - chr8.4:1967576-1967595 None:intergenic 35.0%
CTCAAAACCACACCTAAAAT+TGG + chr8.4:1967439-1967458 MS.gene061195:intron 35.0%
CTTCTCACATGCAACTATAA+TGG + chr8.4:1966636-1966655 MS.gene061195:CDS 35.0%
GAAAGCAAGGATCAAAATCA+AGG + chr8.4:1968793-1968812 MS.gene061195:CDS 35.0%
GAATAGAACTTCTCAACTTG+AGG - chr8.4:1970250-1970269 None:intergenic 35.0%
GAGCAATTGCTTAATGTAGA+TGG + chr8.4:1970309-1970328 MS.gene061195:intron 35.0%
GCTAACAAGAATAAAACGCA+TGG + chr8.4:1968865-1968884 MS.gene061195:intron 35.0%
GTTTCTGCAGTTAATCTTGT+CGG + chr8.4:1969002-1969021 MS.gene061195:CDS 35.0%
TACTACAACTACGAAGTCAT+TGG + chr8.4:1968417-1968436 MS.gene061195:CDS 35.0%
TCTCTTTGCAACAAACACTA+GGG - chr8.4:1967198-1967217 None:intergenic 35.0%
TGTCGAAGAAAAATGAGAAC+TGG - chr8.4:1970020-1970039 None:intergenic 35.0%
TGTGTGATTTATCGTGTTGT+CGG + chr8.4:1968648-1968667 MS.gene061195:intron 35.0%
TTAAGCTCTTCCATTCGAAT+CGG - chr8.4:1968739-1968758 None:intergenic 35.0%
TTCACTTATTGTGTTGTCCA+AGG - chr8.4:1970357-1970376 None:intergenic 35.0%
TTCTCTTTGCAACAAACACT+AGG - chr8.4:1967199-1967218 None:intergenic 35.0%
! AAACATTGGTGTCTCGAAAT+TGG - chr8.4:1969610-1969629 None:intergenic 35.0%
! AAAGAAGCCTCGTTTAGTTT+GGG + chr8.4:1968956-1968975 MS.gene061195:intron 35.0%
! AACATTGGTGTCTCGAAATT+GGG - chr8.4:1969609-1969628 None:intergenic 35.0%
! ATCATTAGTGATGGGGTATA+TGG + chr8.4:1968817-1968836 MS.gene061195:intron 35.0%
! CATCCAATGACATGTTTTGT+CGG + chr8.4:1969505-1969524 MS.gene061195:intron 35.0%
! CTTGACTTGATGAATGTTGA+AGG + chr8.4:1969164-1969183 MS.gene061195:CDS 35.0%
! GAAAGTTCGAGTTCTTTACA+TGG + chr8.4:1969639-1969658 MS.gene061195:CDS 35.0%
! GTTAGCAATATTTTCGGATG+AGG - chr8.4:1968851-1968870 None:intergenic 35.0%
! TCAAGGTATCATTAGTGATG+GGG + chr8.4:1968810-1968829 MS.gene061195:intron 35.0%
! TCACCTCCTTTTTGCAAATA+CGG + chr8.4:1969285-1969304 MS.gene061195:intron 35.0%
! TTTGAGGTAGCTTAGACATT+CGG - chr8.4:1967671-1967690 None:intergenic 35.0%
!!! GGTGATTAGGTTAGTTTTCA+CGG + chr8.4:1966837-1966856 MS.gene061195:intron 35.0%
!!! GTTAGTTTTCACGGTTTGAA+CGG + chr8.4:1966846-1966865 MS.gene061195:intron 35.0%
!!! TACAAACCCTAGTTTTGTTG+TGG + chr8.4:1967224-1967243 MS.gene061195:intron 35.0%
AAATGTATCCAGCCATTTGC+AGG + chr8.4:1969199-1969218 MS.gene061195:CDS 40.0%
AATGCAGTTACAGATTCCTC+TGG + chr8.4:1969747-1969766 MS.gene061195:CDS 40.0%
AATTTGTACCTGCAAATGGC+TGG - chr8.4:1969210-1969229 None:intergenic 40.0%
ACATGGCATTCAAACGTCAA+TGG + chr8.4:1969656-1969675 MS.gene061195:CDS 40.0%
ACTATTCTCCTCTCATGCAA+CGG + chr8.4:1966718-1966737 MS.gene061195:intron 40.0%
ATCAAGCAACCAAAACAACG+TGG + chr8.4:1966922-1966941 MS.gene061195:intron 40.0%
ATGGTTGTGGAGGATAGTTT+CGG + chr8.4:1966519-1966538 MS.gene061195:CDS 40.0%
ATGTCATTGGATGCATATGC+TGG - chr8.4:1969498-1969517 None:intergenic 40.0%
ATGTTATGAGACTGAAGTGG+AGG - chr8.4:1969585-1969604 None:intergenic 40.0%
CAACCGTATTTGCAAAAAGG+AGG - chr8.4:1969291-1969310 None:intergenic 40.0%
CAACTGATATGTGTGTGAGT+AGG - chr8.4:1967725-1967744 None:intergenic 40.0%
CAATGTCAAGATGGCTTACT+TGG + chr8.4:1970073-1970092 MS.gene061195:CDS 40.0%
CAATTCTGTTCCATTGAGTG+AGG + chr8.4:1969947-1969966 MS.gene061195:intron 40.0%
CATTCCTTCCAAGTTCAAAC+TGG - chr8.4:1969544-1969563 None:intergenic 40.0%
CTATTCGGATCAAGGAATCA+TGG + chr8.4:1970264-1970283 MS.gene061195:CDS 40.0%
CTCACCTTTCATCTGATACA+AGG + chr8.4:1967281-1967300 MS.gene061195:intron 40.0%
CTCACTCAATGGAACAGAAT+TGG - chr8.4:1969949-1969968 None:intergenic 40.0%
GAAACGATGCAATGTCAAGA+TGG + chr8.4:1970064-1970083 MS.gene061195:CDS 40.0%
GAATGTTGAAGGGCTTACAA+GGG + chr8.4:1969175-1969194 MS.gene061195:CDS 40.0%
GAGAAGTTCTATTCGGATCA+AGG + chr8.4:1970256-1970275 MS.gene061195:CDS 40.0%
GGAATGTTATGAGACTGAAG+TGG - chr8.4:1969588-1969607 None:intergenic 40.0%
GGACAACACAATAAGTGAAG+TGG + chr8.4:1970358-1970377 MS.gene061195:intron 40.0%
GTCACATAAACTCACTGTCA+AGG - chr8.4:1969028-1969047 None:intergenic 40.0%
TAATGGAGACACTAGTTCCA+TGG + chr8.4:1970180-1970199 MS.gene061195:CDS 40.0%
TCAAGCAACCAAAACAACGT+GGG + chr8.4:1966923-1966942 MS.gene061195:intron 40.0%
TCATGATCCCAAACTAAACG+AGG - chr8.4:1968966-1968985 None:intergenic 40.0%
TCCAACTTATCTCAAAGTGC+TGG + chr8.4:1966605-1966624 MS.gene061195:CDS 40.0%
TGAATGTTGAAGGGCTTACA+AGG + chr8.4:1969174-1969193 MS.gene061195:CDS 40.0%
TGAGCTTACTGATGAAAGGT+AGG - chr8.4:1968558-1968577 None:intergenic 40.0%
TGGCTATCTAAACAGGATAG+AGG + chr8.4:1969406-1969425 MS.gene061195:CDS 40.0%
TGTGTGAGCTTACTGATGAA+AGG - chr8.4:1968562-1968581 None:intergenic 40.0%
TGTTATGAGACTGAAGTGGA+GGG - chr8.4:1969584-1969603 None:intergenic 40.0%
TTCCTCCTTCAACAATACCT+TGG + chr8.4:1970141-1970160 MS.gene061195:CDS 40.0%
TTGAGGTAGCTTAGACATTC+GGG - chr8.4:1967670-1967689 None:intergenic 40.0%
TTGCAACAAACACTAGGGTT+GGG - chr8.4:1967193-1967212 None:intergenic 40.0%
TTGGGCTAAACTTTGTACCA+TGG - chr8.4:1970200-1970219 None:intergenic 40.0%
TTTGCAACAAACACTAGGGT+TGG - chr8.4:1967194-1967213 None:intergenic 40.0%
! AAGAAAGGTACAAAGTGAGG+AGG + chr8.4:1968893-1968912 MS.gene061195:intron 40.0%
! ACTAAACGAGGCTTCTTTTG+AGG - chr8.4:1968954-1968973 None:intergenic 40.0%
! AGACTCCGATTTTCTCACTT+CGG + chr8.4:1967391-1967410 MS.gene061195:intron 40.0%
! GTGATGAAGAGTGTGATACA+TGG + chr8.4:1968691-1968710 MS.gene061195:CDS 40.0%
! TCTTTTGCCAAGACTGTTGT+GGG + chr8.4:1967778-1967797 MS.gene061195:intron 40.0%
! TGGAAGAGCTTAAGAGCATA+TGG + chr8.4:1968746-1968765 MS.gene061195:CDS 40.0%
! TTCTTTTGCCAAGACTGTTG+TGG + chr8.4:1967777-1967796 MS.gene061195:intron 40.0%
!! ATCCAAGGTATTGTTGAAGG+AGG - chr8.4:1970146-1970165 None:intergenic 40.0%
!! TCCAGCACTTTGAGATAAGT+TGG - chr8.4:1966609-1966628 None:intergenic 40.0%
!! TCTAGTGAAACCGATTCGAA+TGG + chr8.4:1968726-1968745 MS.gene061195:CDS 40.0%
!!! GTTGACGATGTTTTAGGAGA+AGG + chr8.4:1966543-1966562 MS.gene061195:CDS 40.0%
!!! TGTTTTAGGAGAAGGTTTCC+CGG + chr8.4:1966551-1966570 MS.gene061195:CDS 40.0%
!!! TTCGGTGTTGACGATGTTTT+AGG + chr8.4:1966537-1966556 MS.gene061195:CDS 40.0%
AAGGGTTCAGTAGGTGGATA+TGG + chr8.4:1969457-1969476 MS.gene061195:intron 45.0%
AGGATTGAGTCTCTTGGTCA+CGG - chr8.4:1967132-1967151 None:intergenic 45.0%
AGGGTTCAGTAGGTGGATAT+GGG + chr8.4:1969458-1969477 MS.gene061195:intron 45.0%
ATGAAACGACTCCAAGACAG+GGG - chr8.4:1970558-1970577 None:intergenic 45.0%
CACACCATCCAGTTTGAACT+TGG + chr8.4:1969533-1969552 MS.gene061195:intron 45.0%
CAGCCGACAAAACATGTCAT+TGG - chr8.4:1969511-1969530 None:intergenic 45.0%
CATTGCATCGTTTCCTCCAA+AGG - chr8.4:1970058-1970077 None:intergenic 45.0%
CCAATACTGACCTACTTTGG+AGG + chr8.4:1967022-1967041 MS.gene061195:intron 45.0%
CCACTTCTGACAGGGTTAAA+AGG - chr8.4:1969909-1969928 None:intergenic 45.0%
CCATCCAGTTTGAACTTGGA+AGG + chr8.4:1969537-1969556 MS.gene061195:intron 45.0%
CCTCCAAAGTAGGTCAGTAT+TGG - chr8.4:1967025-1967044 None:intergenic 45.0%
CCTTCCAAGTTCAAACTGGA+TGG - chr8.4:1969540-1969559 None:intergenic 45.0%
CGGTTTGAACGGTTGTGAAT+CGG + chr8.4:1966857-1966876 MS.gene061195:intron 45.0%
CTTGGTCACGGAAAGAGATT+CGG - chr8.4:1967120-1967139 None:intergenic 45.0%
GAAGTGAGAAAATCGGAGTC+TGG - chr8.4:1967392-1967411 None:intergenic 45.0%
GACAGGGGTAATAACTTCCA+CGG - chr8.4:1970543-1970562 None:intergenic 45.0%
GATGAAACGACTCCAAGACA+GGG - chr8.4:1970559-1970578 None:intergenic 45.0%
GGAAGTTATTACCCCTGTCT+TGG + chr8.4:1970544-1970563 MS.gene061195:CDS 45.0%
GGTCCAATACTGACCTACTT+TGG + chr8.4:1967019-1967038 MS.gene061195:intron 45.0%
GTTTACAACCGTTGCATGAG+AGG - chr8.4:1966729-1966748 None:intergenic 45.0%
TACCAGCAAAAGGGTTCAGT+AGG + chr8.4:1969448-1969467 MS.gene061195:CDS 45.0%
TAGAGGAACCACTTCTGACA+GGG - chr8.4:1969917-1969936 None:intergenic 45.0%
TCAGCAAGTCGGACTTGAAA+TGG + chr8.4:1968531-1968550 MS.gene061195:CDS 45.0%
TGATGTTAGCATGCCAGACA+TGG + chr8.4:1968492-1968511 MS.gene061195:CDS 45.0%
TTAGAGGAACCACTTCTGAC+AGG - chr8.4:1969918-1969937 None:intergenic 45.0%
TTCAAGCTCCTTCAGCAAGT+CGG + chr8.4:1968520-1968539 MS.gene061195:CDS 45.0%
TTCACAGCAGAACCTTCAAC+AGG - chr8.4:1969879-1969898 None:intergenic 45.0%
TTCAGAATAGTCGTGTGCCT+TGG + chr8.4:1970337-1970356 MS.gene061195:intron 45.0%
TTGGATCCCTACCAGCAAAA+GGG + chr8.4:1969439-1969458 MS.gene061195:CDS 45.0%
TTGGTCACGGAAAGAGATTC+GGG - chr8.4:1967119-1967138 None:intergenic 45.0%
! ACTGAACCCTTTTGCTGGTA+GGG - chr8.4:1969448-1969467 None:intergenic 45.0%
! AGACATCGTTGCTGTTCCTT+TGG + chr8.4:1970039-1970058 MS.gene061195:intron 45.0%
! AGCAATCGAGGCCCAATTTT+AGG - chr8.4:1967454-1967473 None:intergenic 45.0%
! CCTTTTAACCCTGTCAGAAG+TGG + chr8.4:1969906-1969925 MS.gene061195:CDS 45.0%
! GACTCCGATTTTCTCACTTC+GGG + chr8.4:1967392-1967411 MS.gene061195:intron 45.0%
! GTGTGAGTAGGTAGCTTTAC+TGG - chr8.4:1967713-1967732 None:intergenic 45.0%
! TACTGAACCCTTTTGCTGGT+AGG - chr8.4:1969449-1969468 None:intergenic 45.0%
! TCTGGAACTGCCAAAATCGA+CGG - chr8.4:1967486-1967505 None:intergenic 45.0%
!! ATTTAGGAGCATCAAAGCCG+TGG + chr8.4:1970523-1970542 MS.gene061195:CDS 45.0%
!! TTTCAAGTCCGACTTGCTGA+AGG - chr8.4:1968531-1968550 None:intergenic 45.0%
!!! CTGTTGTGGGTGTGTTGTTT+TGG + chr8.4:1967791-1967810 MS.gene061195:intron 45.0%
!!! AAAATATTTTGTTAAAAAAA+TGG - chr8.4:1968032-1968051 None:intergenic 5.0%
!!! AAATTATATAAGTATTTTTT+TGG + chr8.4:1968078-1968097 MS.gene061195:intron 5.0%
AGCAACCAAAACAACGTGGG+TGG + chr8.4:1966926-1966945 MS.gene061195:intron 50.0%
AGCTTGAAGCCATCCATGTC+TGG - chr8.4:1968508-1968527 None:intergenic 50.0%
CAACACACCCACAACAGTCT+TGG - chr8.4:1967788-1967807 None:intergenic 50.0%
CAGCAAAAGGGTTCAGTAGG+TGG + chr8.4:1969451-1969470 MS.gene061195:intron 50.0%
CGATGAAACGACTCCAAGAC+AGG - chr8.4:1970560-1970579 None:intergenic 50.0%
CGGAAAGAGATTCGGGACTT+TGG - chr8.4:1967112-1967131 None:intergenic 50.0%
GGATAGAGGAGATGATGCGT+TGG + chr8.4:1969420-1969439 MS.gene061195:CDS 50.0%
GTTAGCATGCCAGACATGGA+TGG + chr8.4:1968496-1968515 MS.gene061195:CDS 50.0%
GTTGGATCCCTACCAGCAAA+AGG + chr8.4:1969438-1969457 MS.gene061195:CDS 50.0%
TCTGATGTCTTGGAAGCCAG+AGG - chr8.4:1969766-1969785 None:intergenic 50.0%
TGCGCCCGAAGTGAGAAAAT+CGG - chr8.4:1967399-1967418 None:intergenic 50.0%
TTTAGGAGAAGGTTTCCCGG+CGG + chr8.4:1966554-1966573 MS.gene061195:CDS 50.0%
! CACCTACTGAACCCTTTTGC+TGG - chr8.4:1969453-1969472 None:intergenic 50.0%
! CATCGTTGCTGTTCCTTTGG+AGG + chr8.4:1970042-1970061 MS.gene061195:CDS 50.0%
! GTAGGTCAGTATTGGACCGA+CGG - chr8.4:1967017-1967036 None:intergenic 50.0%
!! TCGAGGCCCAATTTTAGGTG+TGG - chr8.4:1967449-1967468 None:intergenic 50.0%
!! TGACAGTGGCTCTGATGTCT+TGG - chr8.4:1969776-1969795 None:intergenic 50.0%
!!! TCCAAATCGGCCGTCGATTT+TGG + chr8.4:1967473-1967492 MS.gene061195:intron 50.0%
GCCAAAATCGACGGCCGATT+TGG - chr8.4:1967477-1967496 None:intergenic 55.0%
GCTGCTCTCTCCTCCAAAGT+AGG - chr8.4:1967035-1967054 None:intergenic 55.0%
GGGCCTCGATTGCTCCAAAT+CGG + chr8.4:1967460-1967479 MS.gene061195:intron 55.0%
TTAGGAGAAGGTTTCCCGGC+GGG + chr8.4:1966555-1966574 MS.gene061195:CDS 55.0%
! AGCTGCCACCCACGTTGTTT+TGG - chr8.4:1966934-1966953 None:intergenic 55.0%
!! CGGCCGATTTGGAGCAATCG+AGG - chr8.4:1967466-1967485 None:intergenic 60.0%
CCAGAACACGCATACCCGCC+GGG - chr8.4:1966572-1966591 None:intergenic 65.0%
GCCAGAACACGCATACCCGC+CGG - chr8.4:1966573-1966592 None:intergenic 65.0%
CCCGGCGGGTATGCGTGTTC+TGG + chr8.4:1966569-1966588 MS.gene061195:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 1966519 1970589 1966519 ID=MS.gene061195
chr8.4 mRNA 1966519 1970589 1966519 ID=MS.gene061195.t1;Parent=MS.gene061195
chr8.4 exon 1966519 1966657 1966519 ID=MS.gene061195.t1.exon1;Parent=MS.gene061195.t1
chr8.4 CDS 1966519 1966657 1966519 ID=cds.MS.gene061195.t1;Parent=MS.gene061195.t1
chr8.4 exon 1968416 1968568 1968416 ID=MS.gene061195.t1.exon2;Parent=MS.gene061195.t1
chr8.4 CDS 1968416 1968568 1968416 ID=cds.MS.gene061195.t1;Parent=MS.gene061195.t1
chr8.4 exon 1968686 1968814 1968686 ID=MS.gene061195.t1.exon3;Parent=MS.gene061195.t1
chr8.4 CDS 1968686 1968814 1968686 ID=cds.MS.gene061195.t1;Parent=MS.gene061195.t1
chr8.4 exon 1968973 1969032 1968973 ID=MS.gene061195.t1.exon4;Parent=MS.gene061195.t1
chr8.4 CDS 1968973 1969032 1968973 ID=cds.MS.gene061195.t1;Parent=MS.gene061195.t1
chr8.4 exon 1969144 1969220 1969144 ID=MS.gene061195.t1.exon5;Parent=MS.gene061195.t1
chr8.4 CDS 1969144 1969220 1969144 ID=cds.MS.gene061195.t1;Parent=MS.gene061195.t1
chr8.4 exon 1969385 1969469 1969385 ID=MS.gene061195.t1.exon6;Parent=MS.gene061195.t1
chr8.4 CDS 1969385 1969469 1969385 ID=cds.MS.gene061195.t1;Parent=MS.gene061195.t1
chr8.4 exon 1969559 1969963 1969559 ID=MS.gene061195.t1.exon7;Parent=MS.gene061195.t1
chr8.4 CDS 1969559 1969963 1969559 ID=cds.MS.gene061195.t1;Parent=MS.gene061195.t1
chr8.4 exon 1970041 1970295 1970041 ID=MS.gene061195.t1.exon8;Parent=MS.gene061195.t1
chr8.4 CDS 1970041 1970295 1970041 ID=cds.MS.gene061195.t1;Parent=MS.gene061195.t1
chr8.4 exon 1970486 1970589 1970486 ID=MS.gene061195.t1.exon9;Parent=MS.gene061195.t1
chr8.4 CDS 1970486 1970589 1970486 ID=cds.MS.gene061195.t1;Parent=MS.gene061195.t1
Gene Sequence

>MS.gene061195

ATGGTTGTGGAGGATAGTTTCGGTGTTGACGATGTTTTAGGAGAAGGTTTCCCGGCGGGTATGCGTGTTCTGGCAGTTGATGACGATCCAACTTATCTCAAAGTGCTGGAGAAGCAACTTCTCACATGCAACTATAATGGTTCGTTGCCTTTCTTTTTCGTTCATTCAATATGATTACGCATTGATTATTCTTATGTTTACTATTCTCCTCTCATGCAACGGTTGTAAACATATATTGGAAGTAGCTTTGATATAAGGAAACCTTTTTTTTTTCTTTGAGGCGTTGATATAGTAAACCTTAGTTTTTTTTAGTAAATTGGTGATTAGGTTAGTTTTCACGGTTTGAACGGTTGTGAATCGGTTAAAAAATCACACCAATAAAACTTATTTGTGGAGCAAATGAATCAAGCAACCAAAACAACGTGGGTGGCAGCTCTAAACACAATCAAAAGATAGAACAACAAAAGAGAAAGAACACACAAAAATTTGTTTGTTCCGTCGGTCCAATACTGACCTACTTTGGAGGAGAGAGCAGCTCTCCGTACCACTATAACTATTGAGTAACTTTACAAACCTAATTCATTCTTTTGCCAAAGTCCCGAATCTCTTTCCGTGACCAAGAGACTCAATCCTAATAGTGTTTCTCTAAGGTGAATCAATGATGACTCAATCCCAACCCTAGTGTTTGTTGCAAAGAGAAAACTCTACAAACCCTAGTTTTGTTGTGGTTTCTAAACCCTTGTTTTTCTACTCTCTACATCTCTCACCTTTCATCTGATACAAGGTTTATATTTATAGTAAAAGCATCCTAAAAATTGTAACACATCTCATGCTGAAAATACGTTTCTGTTTTTTCTGCATCATTAAAAACCAGACTCCGATTTTCTCACTTCGGGCGCAGATTTTTACGAGACAGAAGTCTCAAAACCACACCTAAAATTGGGCCTCGATTGCTCCAAATCGGCCGTCGATTTTGGCAGTTCCAGAAACACCATGTTTAAATCATACTAGAACATGAACTACAACCTATTTATCATAGGCTATGTAAATGTATCCGGAGTCTGATATGTATTAGTGTCTGATACAATTTGACGCATGTCATGTGTTAGTGTATATTTATGCTTCATAGGTTATAAGTCTTCTAGTGTCCCGAATGTCTAAGCTACCTCAAAAAAACAAAGAAAAAAACTACCAGTAAAGCTACCTACTCACACACATATCAGTTGACAATTTTCTTGATTTTAAATACATAAATTCATTCTTTTGCCAAGACTGTTGTGGGTGTGTTGTTTTGGCTTAAAATAAAATTATTTTGTTTTTATAAAATATAAATATTATTTTTGAGATCTATAAAAAAAAAGCCGAAGATAATTTCCATTTATTTACTATCATAAAAATAATTTTTTTTAAGATTTAAAACACTTACACTTGAGTTTCTTGTTTTTTAAAAGAAAAATAGATTTTGAAAAAGCTATTTGAATAACTTTTCGATTTGAGGCTAAAAATTACTCCATTTTTTTAACAAAATATTTTTAAAAAAATCTGAAACAAACACTATAAAATTATATAAGTATTTTTTTGGTTTAAAAAATTGATTTTTTGTTTCTTTTAAAAAAATCTAAAACAAAAGGGTCTGTGTTTCTCTACTTCTAAAGTTGAAATTTTAAACTTTTTAATGATTATTACTGCTTTATTGGGCCTGACATGTTAGTGATTTTTTTTTTTCCTTCTTTTTCTGAATGCAAAAGAAAATTTTATAAAATAAGATGATACTATCTTATTTAATAAAATTTTCATATGAGAATTGCTGGTCTTTTATATAATAATGCTGGAAGCCTTTTTATTTAAATGTCTCTTCACTAAATCACTAGCTTGATTCTTGGTTGCATTGTTGCAGTTACTACAACTACGAAGTCATTGGAAGCGCTTGAATTGTTGAGAGAAAAGAAGGATATGTTTGACCTTGTAATTAGTGATGTTAGCATGCCAGACATGGATGGCTTCAAGCTCCTTCAGCAAGTCGGACTTGAAATGGACCTACCTTTCATCAGTAAGCTCACACACCTTTCTCTTAAAATCTGTTTTGTTTACCTAATTAAGATCCATTTCTTATATTCGGATATTTTGTGTGTGTGATTTATCGTGTTGTCGGTAAATGATGATATAGAGAAGGTGATGAAGAGTGTGATACATGGTGCTTGCAACTATCTAGTGAAACCGATTCGAATGGAAGAGCTTAAGAGCATATGGCAACATGTAGTTAGAAAGAAGATTGAAAGCAAGGATCAAAATCAAGGTATCATTAGTGATGGGGTATATGGTCAAGACACCTCATCCGAAAATATTGCTAACAAGAATAAAACGCATGGACAAAAAGAAAGGTACAAAGTGAGGAGGAAGAAGCAGAACAAGATAATGATGAGAAACGTTCGCCTCAAAAGAAGCCTCGTTTAGTTTGGGATCATGAGTTGCATCGAAAATTTGTTTCTGCAGTTAATCTTGTCGGCCTTGACAGTGAGTTTATGTGACAATGAAATTATTTTTTTACTTTGCTAATTTGATGAATGATTCTTAAATATGGAGATTATTGTTCCTAATATGTAGTTTCTTCAACTATTATTGCAGAGGCTTCGCCTAAGAAAATACTTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTATCCAGCCATTTGCAGGTACAAATTATATATAACTTTCCCTTTTGTCAAAAAATCTCAAACTAGTTTATCATTAAAATATTCACCTCCTTTTTGCAAATACGGTTGAAACTTCAACAAGCAAGTTTATGAAACGTAAGTATAAAAACTGTGTGTAACCTCATTTTCATTTTCGATTGCAGAGATACAGAATTGATATCAAATGGCTATCTAAACAGGATAGAGGAGATGATGCGTTGGATCCCTACCAGCAAAAGGGTTCAGTAGGTGGATATGGGATTTTTGCACACTGCCAGCATATGCATCCAATGACATGTTTTGTCGGCTGAACACACCATCCAGTTTGAACTTGGAAGGAATGAGTTCTTCTGCACTAGTCCCTCCACTTCAGTCTCATAACATTCCCAATTTCGAGACACCAATGTTTTCTGAAAGTGAAAGTTCGAGTTCTTTACATGGCATTCAAACGTCAATGGAAATTAACCAGTTTCAGCAGAATATTTATCCGCCTGATAACATTAATTTAAGTCCAATTGATGATTCAAATGCAGTTACAGATTCCTCTGGCTTCCAAGACATCAGAGCCACTGTCAATAATGCAAATGTTTCTCTTTCTTGCATCGCAAGCAATCACATACAAACACATAAATCAGAAGCATTTATAAATCACTCTCCTGTTGAAGGTTCTGCTGTGAAAACACAACCTTTTAACCCTGTCAGAAGTGGTTCCTCTAACTTTGCTTCCAATTCTGTTCCATTGAGTGAGGATTTTAACAATGATCAAATGTTGCACAATAACTACAAGTTTACTTCTCCAGTTCTCATTTTTCTTCGACAGACATCGTTGCTGTTCCTTTGGAGGAAACGATGCAATGTCAAGATGGCTTACTTGGGAATGTTATAAATGCTCCATGTTACTCACAACATCAAAATGCGAGTTCCTCCTTCAACAATACCTTGGATTATCTTGCTTCTTCTAATGGAGACACTAGTTCCATGGTACAAAGTTTAGCCCAAACTAATAGTTCATTAATCACTCAGATGCCTCAAGTTGAGAAGTTCTATTCGGATCAAGGAATCATGGAATCAAATGGTGATTGCTTATTGAGCAATTGCTTAATGTAGATGGATTCATTCAGAATAGTCGTGTGCCTTGGACAACACAATAAGTGAAGTGGTTAAACAGGTATGCACGATTAAAATATTCTTGTGTTTTGTTCACTTCTTAGCAAGTTCCATATTGATTTCTTTTTAAATTATGTGAAATTCTATTTATGATGCAGGCTCAAATGAGACGCAATTGATAGATGGAGAAATACAATTTAGGAGCATCAAAGCCGTGGAAGTTATTACCCCTGTCTTGGAGTCGTTTCATCGAGTAGTTTAA
Protein sequence

>MS.gene061195.t1

MVVEDSFGVDDVLGEGFPAGMRVLAVDDDPTYLKVLEKQLLTCNYNVTTTTKSLEALELLREKKDMFDLVISDVSMPDMDGFKLLQQVGLEMDLPFIKKVMKSVIHGACNYLVKPIRMEELKSIWQHVVRKKIESKDQNQVWDHELHRKFVSAVNLVGLDKASPKKILDLMNVEGLTRENVSSHLQRYRIDIKWLSKQDRGDDALDPYQQKGSVGMSSSALVPPLQSHNIPNFETPMFSESESSSSLHGIQTSMEINQFQQNIYPPDNINLSPIDDSNAVTDSSGFQDIRATVNNANVSLSCIASNHIQTHKSEAFINHSPVEGSAVKTQPFNPVRSGSSNFASNSVPLNIVAVPLEETMQCQDGLLGNVINAPCYSQHQNASSSFNNTLDYLASSNGDTSSMVQSLAQTNSSLITQMPQVEKFYSDQGIMESNGSNETQLIDGEIQFRSIKAVEVITPVLESFHRVV