Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061246.t1 | XP_024632725.1 | 49.6 | 597 | 64 | 3 | 17 | 382 | 31 | 621 | 4.30E-141 | 511.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061246.t1 | Q9SY66 | 36.7 | 177 | 110 | 1 | 17 | 193 | 120 | 294 | 2.6e-30 | 134.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061246.t1 | A0A072U6N8 | 66.9 | 257 | 38 | 4 | 21 | 277 | 14 | 223 | 1.6e-81 | 312.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene061246.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061246.t1 | MTR_6g014355 | 66.031 | 262 | 42 | 4 | 16 | 277 | 9 | 223 | 7.43e-109 | 319 |
| MS.gene061246.t1 | MTR_5g017720 | 82.394 | 142 | 7 | 1 | 249 | 372 | 18 | 159 | 2.02e-75 | 232 |
| MS.gene061246.t1 | MTR_4g035820 | 54.706 | 170 | 77 | 0 | 17 | 186 | 144 | 313 | 1.53e-55 | 193 |
| MS.gene061246.t1 | MTR_4g035820 | 28.402 | 169 | 104 | 2 | 180 | 346 | 365 | 518 | 1.02e-14 | 76.3 |
| MS.gene061246.t1 | MTR_2g035140 | 31.310 | 313 | 117 | 8 | 78 | 354 | 13 | 263 | 8.17e-34 | 127 |
| MS.gene061246.t1 | MTR_3g450850 | 36.508 | 189 | 110 | 2 | 17 | 197 | 124 | 310 | 2.14e-32 | 125 |
| MS.gene061246.t1 | MTR_3g012160 | 44.086 | 93 | 52 | 0 | 90 | 182 | 1 | 93 | 8.48e-21 | 86.7 |
| MS.gene061246.t1 | MTR_6g051425 | 29.545 | 176 | 111 | 4 | 15 | 186 | 89 | 255 | 2.00e-17 | 82.8 |
| MS.gene061246.t1 | MTR_8g447350 | 42.857 | 77 | 27 | 1 | 201 | 277 | 1 | 60 | 8.12e-13 | 67.0 |
| MS.gene061246.t1 | MTR_1g070355 | 27.545 | 167 | 115 | 3 | 17 | 183 | 145 | 305 | 2.54e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061246.t1 | AT1G10240 | 36.723 | 177 | 110 | 1 | 17 | 193 | 120 | 294 | 7.91e-35 | 136 |
| MS.gene061246.t1 | AT1G10240 | 36.723 | 177 | 110 | 1 | 17 | 193 | 120 | 294 | 7.91e-35 | 136 |
| MS.gene061246.t1 | AT5G28530 | 36.129 | 155 | 89 | 1 | 40 | 184 | 146 | 300 | 8.17e-25 | 106 |
| MS.gene061246.t1 | AT5G28530 | 36.129 | 155 | 89 | 1 | 40 | 184 | 146 | 300 | 9.00e-25 | 106 |
| MS.gene061246.t1 | AT5G28530 | 36.129 | 155 | 89 | 1 | 40 | 184 | 146 | 300 | 9.00e-25 | 106 |
| MS.gene061246.t1 | AT4G38180 | 28.324 | 173 | 112 | 3 | 15 | 184 | 144 | 307 | 9.69e-19 | 88.6 |
| MS.gene061246.t1 | AT5G28530 | 39.091 | 110 | 60 | 1 | 40 | 142 | 146 | 255 | 1.37e-17 | 85.1 |
| MS.gene061246.t1 | AT5G28530 | 39.091 | 110 | 60 | 1 | 40 | 142 | 146 | 255 | 1.52e-17 | 84.7 |
| MS.gene061246.t1 | AT1G76320 | 30.481 | 187 | 113 | 5 | 2 | 185 | 49 | 221 | 8.42e-14 | 73.6 |
| MS.gene061246.t1 | AT1G76320 | 30.481 | 187 | 113 | 5 | 2 | 185 | 49 | 221 | 9.05e-14 | 73.2 |
| MS.gene061246.t1 | AT1G76320 | 30.481 | 187 | 113 | 5 | 2 | 185 | 49 | 221 | 9.05e-14 | 73.2 |
| MS.gene061246.t1 | AT1G76320 | 30.481 | 187 | 113 | 5 | 2 | 185 | 49 | 221 | 1.20e-13 | 72.8 |
| MS.gene061246.t1 | AT4G15090 | 27.059 | 170 | 117 | 3 | 15 | 183 | 119 | 282 | 9.12e-13 | 70.5 |
| MS.gene061246.t1 | AT4G15090 | 27.059 | 170 | 117 | 3 | 15 | 183 | 119 | 282 | 9.12e-13 | 70.5 |
| MS.gene061246.t1 | AT4G15090 | 27.059 | 170 | 117 | 3 | 15 | 183 | 119 | 282 | 9.12e-13 | 70.5 |
| MS.gene061246.t1 | AT4G15090 | 27.059 | 170 | 117 | 3 | 15 | 183 | 119 | 282 | 9.12e-13 | 70.5 |
| MS.gene061246.t1 | AT4G15090 | 27.059 | 170 | 117 | 3 | 15 | 183 | 119 | 282 | 9.12e-13 | 70.5 |
Find 63 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAACTTGCCATTCTTT+TGG | 0.220230 | 8.3:-6018272 | None:intergenic |
| CACAAAAGCATAAAGTCTTA+TGG | 0.233735 | 8.3:+6019603 | MS.gene061246:CDS |
| TAAGATTCACCAAGGTAAAT+TGG | 0.262024 | 8.3:+6018511 | MS.gene061246:CDS |
| TAAGACTTTAAATATAAAAT+AGG | 0.262718 | 8.3:-6020073 | None:intergenic |
| TTCTCCACATTCTCAATATA+TGG | 0.265541 | 8.3:-6019827 | None:intergenic |
| CTTTGAACTTGATCCTCTAT+AGG | 0.274002 | 8.3:-6019461 | None:intergenic |
| CACCATGTTGGATACATATA+GGG | 0.299499 | 8.3:+6019415 | MS.gene061246:CDS |
| TTTGAACTTGATCCTCTATA+GGG | 0.302436 | 8.3:-6019460 | None:intergenic |
| TATCAACAGTGAATGCAAAT+TGG | 0.310367 | 8.3:-6018595 | None:intergenic |
| ATTATAAGAATTCACCTTGT+AGG | 0.317528 | 8.3:-6018708 | None:intergenic |
| AAAGACTAGAGAATATATTT+TGG | 0.320756 | 8.3:+6018624 | MS.gene061246:CDS |
| TTTGAGTTGTACCAAGAGTA+TGG | 0.355497 | 8.3:+6018662 | MS.gene061246:CDS |
| TGAATATCTTTCCGAAGAAA+TGG | 0.356103 | 8.3:-6018476 | None:intergenic |
| ACACCATGTTGGATACATAT+AGG | 0.358167 | 8.3:+6019414 | MS.gene061246:CDS |
| GCAAGGAAGCGCACTTGATC+TGG | 0.359458 | 8.3:-6018329 | None:intergenic |
| ACAAAAGCATAAAGTCTTAT+GGG | 0.378373 | 8.3:+6019604 | MS.gene061246:CDS |
| ATCTTGCCATTGAGGACATT+GGG | 0.386566 | 8.3:+6019375 | MS.gene061246:CDS |
| CAAGCAAATAATGCGTGTTA+TGG | 0.401498 | 8.3:+6018421 | MS.gene061246:CDS |
| CTTAGTGAAGTAGGACATAA+AGG | 0.408462 | 8.3:+6019797 | MS.gene061246:CDS |
| ATGGTGATCTTCCATTTCTT+CGG | 0.414681 | 8.3:+6018465 | MS.gene061246:CDS |
| TTGCCCTCTCAAACTCCTCC+TGG | 0.438199 | 8.3:-6019514 | None:intergenic |
| TTATGGGATGGTGATGTTGT+TGG | 0.458032 | 8.3:+6019620 | MS.gene061246:CDS |
| GGAACATAACCTTCTTTGTC+CGG | 0.471805 | 8.3:-6019995 | None:intergenic |
| TTAGGTTGATCTTGCCATTG+AGG | 0.494408 | 8.3:+6019367 | MS.gene061246:intron |
| CCCAAAACAAAACGATCAAA+AGG | 0.499343 | 8.3:+6019899 | MS.gene061246:CDS |
| GAGGTAGTAAATCATGATTA+TGG | 0.500482 | 8.3:-6018307 | None:intergenic |
| AATGTCATGCTTAGTGAAGT+AGG | 0.500833 | 8.3:+6019788 | MS.gene061246:CDS |
| CAACGACCTCTCCATACTCT+TGG | 0.501798 | 8.3:-6018673 | None:intergenic |
| TCACAATGTTACAACTTGTC+CGG | 0.507013 | 8.3:+6019976 | MS.gene061246:CDS |
| TCGATCATTATCCCCTATAG+AGG | 0.513231 | 8.3:+6019448 | MS.gene061246:CDS |
| GATCTTGCCATTGAGGACAT+TGG | 0.526255 | 8.3:+6019374 | MS.gene061246:CDS |
| CCTCCGCGTTCAATAACAAA+AGG | 0.532998 | 8.3:+6019872 | MS.gene061246:CDS |
| TCAAGGTGTGAATGCAAAGC+GGG | 0.533662 | 8.3:+6018212 | MS.gene061246:intron |
| TTGTTGCCCAATGTCCTCAA+TGG | 0.536367 | 8.3:-6019381 | None:intergenic |
| ACAACTTGTCCGGACAAAGA+AGG | 0.546455 | 8.3:+6019986 | MS.gene061246:CDS |
| TGCATTTGATACTACCTACA+AGG | 0.547093 | 8.3:+6018694 | MS.gene061246:CDS |
| ATTTACTGTGAAATATTACA+AGG | 0.556334 | 8.3:+6019571 | MS.gene061246:CDS |
| CATCTTCCTCAGAAATGTTG+TGG | 0.561811 | 8.3:-6018358 | None:intergenic |
| TAGTAAATCATGATTATGGT+TGG | 0.565674 | 8.3:-6018303 | None:intergenic |
| AAATGTTGTGGTAAGATGCA+AGG | 0.573935 | 8.3:-6018346 | None:intergenic |
| CATCACCATCCAATTTACCT+TGG | 0.575070 | 8.3:-6018520 | None:intergenic |
| GGGTCCATATATTGAGAATG+TGG | 0.577307 | 8.3:+6019823 | MS.gene061246:CDS |
| CTCAATCAATTGTTCTCATG+TGG | 0.580264 | 8.3:+6017622 | MS.gene061246:CDS |
| GAAGTAGGACATAAAGGCAA+GGG | 0.591654 | 8.3:+6019803 | MS.gene061246:CDS |
| ATTCACCAAGGTAAATTGGA+TGG | 0.593411 | 8.3:+6018515 | MS.gene061246:CDS |
| AGTTCCAGGAGGAGTTTGAG+AGG | 0.593892 | 8.3:+6019510 | MS.gene061246:CDS |
| ACAACTACATCACACCATGT+TGG | 0.599668 | 8.3:+6019403 | MS.gene061246:CDS |
| AAGCATAAAGTCTTATGGGA+TGG | 0.601527 | 8.3:+6019608 | MS.gene061246:CDS |
| TTCAAGGTGTGAATGCAAAG+CGG | 0.603515 | 8.3:+6018211 | MS.gene061246:intron |
| GTTCCAGGAGGAGTTTGAGA+GGG | 0.605391 | 8.3:+6019511 | MS.gene061246:CDS |
| TGAAGTAGGACATAAAGGCA+AGG | 0.605684 | 8.3:+6019802 | MS.gene061246:CDS |
| TTGAACTTGATCCTCTATAG+GGG | 0.610343 | 8.3:-6019459 | None:intergenic |
| AAGGTGGAATCGAATTGTCA+AGG | 0.613048 | 8.3:+6019918 | MS.gene061246:CDS |
| ACCATGTTGGATACATATAG+GGG | 0.617078 | 8.3:+6019416 | MS.gene061246:CDS |
| ATCTTACCACAACATTTCTG+AGG | 0.619979 | 8.3:+6018352 | MS.gene061246:CDS |
| TACAACTCAAAGCAATGAGG+TGG | 0.628223 | 8.3:-6018650 | None:intergenic |
| AAAACAAAACGATCAAAAGG+TGG | 0.630073 | 8.3:+6019902 | MS.gene061246:CDS |
| AGGAAGCGCACTTGATCTGG+AGG | 0.631105 | 8.3:-6018326 | None:intergenic |
| TTCTTCAATAAGATTCACCA+AGG | 0.638648 | 8.3:+6018503 | MS.gene061246:CDS |
| TCCCCTATATGTATCCAACA+TGG | 0.671193 | 8.3:-6019417 | None:intergenic |
| TGGTACAACTCAAAGCAATG+AGG | 0.685743 | 8.3:-6018653 | None:intergenic |
| TGCGTTTAAGAAGTTCCAGG+AGG | 0.692916 | 8.3:+6019499 | MS.gene061246:CDS |
| GTTGTACCAAGAGTATGGAG+AGG | 0.729685 | 8.3:+6018667 | MS.gene061246:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGACTTTAAATATAAAAT+AGG | - | chr8.3:6020076-6020095 | None:intergenic | 10.0% |
| !! | AATGATACTTTAATAACTAA+TGG | + | chr8.3:6019318-6019337 | MS.gene061246:intron | 15.0% |
| !! | TAATATGAATTTATTTGTGT+AGG | + | chr8.3:6017851-6017870 | MS.gene061246:intron | 15.0% |
| !!! | AATTCAACAATAATATTTTG+TGG | + | chr8.3:6017785-6017804 | MS.gene061246:intron | 15.0% |
| !!! | CGATTTCTTTAAAAAAAAAT+GGG | + | chr8.3:6018096-6018115 | MS.gene061246:intron | 15.0% |
| !!! | TCGATTTCTTTAAAAAAAAA+TGG | + | chr8.3:6018095-6018114 | MS.gene061246:intron | 15.0% |
| !! | AATTCGTATATAAGGAATTA+GGG | - | chr8.3:6017769-6017788 | None:intergenic | 20.0% |
| !! | ATTTACTGTGAAATATTACA+AGG | + | chr8.3:6019571-6019590 | MS.gene061246:CDS | 20.0% |
| !! | TATTGTTGAATTCGTATATA+AGG | - | chr8.3:6017777-6017796 | None:intergenic | 20.0% |
| !! | TTGAGAACAATATAAGAAAA+AGG | - | chr8.3:6017697-6017716 | None:intergenic | 20.0% |
| !!! | AAAGACTAGAGAATATATTT+TGG | + | chr8.3:6018624-6018643 | MS.gene061246:CDS | 20.0% |
| !!! | AATTCTTATAATATGCCTTT+TGG | + | chr8.3:6018719-6018738 | MS.gene061246:intron | 20.0% |
| !!! | AATTGTTTTGAACCTTTTAT+TGG | + | chr8.3:6017991-6018010 | MS.gene061246:intron | 20.0% |
| ! | AAAAAAATGGGATGATACAT+AGG | + | chr8.3:6018108-6018127 | MS.gene061246:intron | 25.0% |
| ! | AGAAAACATTGTCCAATAAA+AGG | - | chr8.3:6018006-6018025 | None:intergenic | 25.0% |
| ! | ATTATAAGAATTCACCTTGT+AGG | - | chr8.3:6018711-6018730 | None:intergenic | 25.0% |
| ! | ATTCGTATATAAGGAATTAG+GGG | - | chr8.3:6017768-6017787 | None:intergenic | 25.0% |
| ! | CAAAACATAGTATAAACACA+GGG | - | chr8.3:6019120-6019139 | None:intergenic | 25.0% |
| ! | CTTGAGAAAAATGTTAAGTA+TGG | + | chr8.3:6018446-6018465 | MS.gene061246:CDS | 25.0% |
| ! | GAATTCGTATATAAGGAATT+AGG | - | chr8.3:6017770-6017789 | None:intergenic | 25.0% |
| ! | TAGTAAATCATGATTATGGT+TGG | - | chr8.3:6018306-6018325 | None:intergenic | 25.0% |
| ! | TGAATTTATTTGTGTAGGTT+AGG | + | chr8.3:6017856-6017875 | MS.gene061246:intron | 25.0% |
| ! | TTATCACATGGTTCATTATT+TGG | - | chr8.3:6017913-6017932 | None:intergenic | 25.0% |
| ! | TTTATGAGAATTATGCCAAA+AGG | + | chr8.3:6018049-6018068 | MS.gene061246:intron | 25.0% |
| !! | ACAAAAGCATAAAGTCTTAT+GGG | + | chr8.3:6019604-6019623 | MS.gene061246:CDS | 25.0% |
| !! | TCATTTTCTGAATTATCACA+TGG | - | chr8.3:6017925-6017944 | None:intergenic | 25.0% |
| !! | TTGAGATTTTTCCAAAAGAA+TGG | + | chr8.3:6018261-6018280 | MS.gene061246:CDS | 25.0% |
| !!! | ATTGCTTTTAAATTCCAACA+AGG | + | chr8.3:6019714-6019733 | MS.gene061246:intron | 25.0% |
| !!! | GGATCATGATATTTTTTTTC+TGG | - | chr8.3:6018164-6018183 | None:intergenic | 25.0% |
| !!! | TTCTTTTGGAAAAATCTCAA+AGG | - | chr8.3:6018261-6018280 | None:intergenic | 25.0% |
| !!! | TTGTAAGCATTTTGAGTTTT+GGG | + | chr8.3:6019649-6019668 | MS.gene061246:intron | 25.0% |
| AAAACAAAACGATCAAAAGG+TGG | + | chr8.3:6019902-6019921 | MS.gene061246:CDS | 30.0% | |
| AACGAAATAGACAATCTTCA+AGG | + | chr8.3:6018195-6018214 | MS.gene061246:intron | 30.0% | |
| AGTTGAAATAAACTTGAACG+AGG | - | chr8.3:6019010-6019029 | None:intergenic | 30.0% | |
| ATTCCAACAAAAATGCCAAA+AGG | - | chr8.3:6018737-6018756 | None:intergenic | 30.0% | |
| CCAAAACATAGTATAAACAC+AGG | - | chr8.3:6019121-6019140 | None:intergenic | 30.0% | |
| CTATTTCGTTGTTCTTTAGA+TGG | - | chr8.3:6018185-6018204 | None:intergenic | 30.0% | |
| GAAGCAAACAAACACATAAT+AGG | + | chr8.3:6018866-6018885 | MS.gene061246:intron | 30.0% | |
| GAGGTAGTAAATCATGATTA+TGG | - | chr8.3:6018310-6018329 | None:intergenic | 30.0% | |
| GCATGAACTTAAGCAAAATT+GGG | + | chr8.3:6018892-6018911 | MS.gene061246:intron | 30.0% | |
| TAAGATTCACCAAGGTAAAT+TGG | + | chr8.3:6018511-6018530 | MS.gene061246:CDS | 30.0% | |
| TATCAACAGTGAATGCAAAT+TGG | - | chr8.3:6018598-6018617 | None:intergenic | 30.0% | |
| TGAATATCTTTCCGAAGAAA+TGG | - | chr8.3:6018479-6018498 | None:intergenic | 30.0% | |
| TGCATGAACTTAAGCAAAAT+TGG | + | chr8.3:6018891-6018910 | MS.gene061246:intron | 30.0% | |
| TTCTCCACATTCTCAATATA+TGG | - | chr8.3:6019830-6019849 | None:intergenic | 30.0% | |
| TTCTTCAATAAGATTCACCA+AGG | + | chr8.3:6018503-6018522 | MS.gene061246:CDS | 30.0% | |
| TTTAAAGAAATCGACCTTTC+CGG | - | chr8.3:6018089-6018108 | None:intergenic | 30.0% | |
| TTTGAACTTGATCCTCTATA+GGG | - | chr8.3:6019463-6019482 | None:intergenic | 30.0% | |
| ! | CACAAAAGCATAAAGTCTTA+TGG | + | chr8.3:6019603-6019622 | MS.gene061246:CDS | 30.0% |
| ! | CCTGTGTTTATACTATGTTT+TGG | + | chr8.3:6019118-6019137 | MS.gene061246:intron | 30.0% |
| ! | GAAGATCAGAGAGTATAAAT+GGG | + | chr8.3:6018963-6018982 | MS.gene061246:intron | 30.0% |
| ! | TTCATTCTTCCTCTTTTTGA+TGG | - | chr8.3:6020029-6020048 | None:intergenic | 30.0% |
| !! | GTGTTTATACTATGTTTTGG+AGG | + | chr8.3:6019121-6019140 | MS.gene061246:intron | 30.0% |
| !! | TCAATAACTTGCCATTCTTT+TGG | - | chr8.3:6018275-6018294 | None:intergenic | 30.0% |
| !!! | ACCTTTTGATCGTTTTGTTT+TGG | - | chr8.3:6019903-6019922 | None:intergenic | 30.0% |
| !!! | CCTTTTGATCGTTTTGTTTT+GGG | - | chr8.3:6019902-6019921 | None:intergenic | 30.0% |
| !!! | GTTGTAAGCATTTTGAGTTT+TGG | + | chr8.3:6019648-6019667 | MS.gene061246:intron | 30.0% |
| !!! | TATGTTTTGGAGGATAGTTT+TGG | + | chr8.3:6019131-6019150 | MS.gene061246:intron | 30.0% |
| !!! | TGTAAGCATTTTGAGTTTTG+GGG | + | chr8.3:6019650-6019669 | MS.gene061246:intron | 30.0% |
| !!! | TTTTTTCTGGAAATCCTTCT+CGG | - | chr8.3:6018151-6018170 | None:intergenic | 30.0% |
| AAAATGGGATGATACATAGG+AGG | + | chr8.3:6018111-6018130 | MS.gene061246:intron | 35.0% | |
| AAACTGCATCTACATTTCGA+TGG | + | chr8.3:6018807-6018826 | MS.gene061246:intron | 35.0% | |
| AAATGGGATGATACATAGGA+GGG | + | chr8.3:6018112-6018131 | MS.gene061246:intron | 35.0% | |
| AAATGTTGTGGTAAGATGCA+AGG | - | chr8.3:6018349-6018368 | None:intergenic | 35.0% | |
| AACATAGTATAAACACAGGG+AGG | - | chr8.3:6019117-6019136 | None:intergenic | 35.0% | |
| AATGTCATGCTTAGTGAAGT+AGG | + | chr8.3:6019788-6019807 | MS.gene061246:CDS | 35.0% | |
| ACACCATGTTGGATACATAT+AGG | + | chr8.3:6019414-6019433 | MS.gene061246:CDS | 35.0% | |
| ACCATGTTGGATACATATAG+GGG | + | chr8.3:6019416-6019435 | MS.gene061246:CDS | 35.0% | |
| ACTTAAGCAAAATTGGGTAC+CGG | + | chr8.3:6018898-6018917 | MS.gene061246:intron | 35.0% | |
| AGAATTATGCCAAAAGGAGT+GGG | + | chr8.3:6018055-6018074 | MS.gene061246:intron | 35.0% | |
| ATCTTACCACAACATTTCTG+AGG | + | chr8.3:6018352-6018371 | MS.gene061246:CDS | 35.0% | |
| ATCTTCGTGGACATTTCTTT+GGG | + | chr8.3:6018924-6018943 | MS.gene061246:intron | 35.0% | |
| ATGGTGATCTTCCATTTCTT+CGG | + | chr8.3:6018465-6018484 | MS.gene061246:CDS | 35.0% | |
| ATTCACCAAGGTAAATTGGA+TGG | + | chr8.3:6018515-6018534 | MS.gene061246:CDS | 35.0% | |
| CAAGCAAATAATGCGTGTTA+TGG | + | chr8.3:6018421-6018440 | MS.gene061246:CDS | 35.0% | |
| CACCATGTTGGATACATATA+GGG | + | chr8.3:6019415-6019434 | MS.gene061246:CDS | 35.0% | |
| CCAAGGTGAAAACATTAACA+AGG | - | chr8.3:6019075-6019094 | None:intergenic | 35.0% | |
| CCCAAAACAAAACGATCAAA+AGG | + | chr8.3:6019899-6019918 | MS.gene061246:CDS | 35.0% | |
| CTCAATCAATTGTTCTCATG+TGG | + | chr8.3:6017622-6017641 | MS.gene061246:CDS | 35.0% | |
| CTTAGTGAAGTAGGACATAA+AGG | + | chr8.3:6019797-6019816 | MS.gene061246:CDS | 35.0% | |
| CTTTGAACTTGATCCTCTAT+AGG | - | chr8.3:6019464-6019483 | None:intergenic | 35.0% | |
| GTTTGCTTCTAGATTGTACT+TGG | - | chr8.3:6018855-6018874 | None:intergenic | 35.0% | |
| TATCTTCGTGGACATTTCTT+TGG | + | chr8.3:6018923-6018942 | MS.gene061246:intron | 35.0% | |
| TCACAATGTTACAACTTGTC+CGG | + | chr8.3:6019976-6019995 | MS.gene061246:CDS | 35.0% | |
| TGCATTTGATACTACCTACA+AGG | + | chr8.3:6018694-6018713 | MS.gene061246:CDS | 35.0% | |
| TTGAACTTGATCCTCTATAG+GGG | - | chr8.3:6019462-6019481 | None:intergenic | 35.0% | |
| TTTACTCTACTCAAACACCA+AGG | - | chr8.3:6019092-6019111 | None:intergenic | 35.0% | |
| TTTGTTGGAATCGACAATCA+CGG | + | chr8.3:6018746-6018765 | MS.gene061246:intron | 35.0% | |
| ! | AAGCATAAAGTCTTATGGGA+TGG | + | chr8.3:6019608-6019627 | MS.gene061246:CDS | 35.0% |
| ! | ACAATTTTGTAAGTGTGCCA+AGG | + | chr8.3:6018556-6018575 | MS.gene061246:CDS | 35.0% |
| ! | ATGCCTTTTGGCATTTTTGT+TGG | + | chr8.3:6018731-6018750 | MS.gene061246:intron | 35.0% |
| ! | CCTTGTTAATGTTTTCACCT+TGG | + | chr8.3:6019072-6019091 | MS.gene061246:intron | 35.0% |
| ! | GGAAGATCAGAGAGTATAAA+TGG | + | chr8.3:6018962-6018981 | MS.gene061246:intron | 35.0% |
| ! | TATTTTGCTCTTCACAAGTG+TGG | + | chr8.3:6019220-6019239 | MS.gene061246:intron | 35.0% |
| ! | TGGACAATGTTTTCTAAGTG+AGG | + | chr8.3:6018011-6018030 | MS.gene061246:intron | 35.0% |
| ! | TGTAGCTTTTGCAATAGAAG+TGG | + | chr8.3:6019953-6019972 | MS.gene061246:CDS | 35.0% |
| ! | TTTTGCGTTTAAGAAGTTCC+AGG | + | chr8.3:6019496-6019515 | MS.gene061246:CDS | 35.0% |
| !! | TTTGAGTTGTACCAAGAGTA+TGG | + | chr8.3:6018662-6018681 | MS.gene061246:CDS | 35.0% |
| !!! | CTCTTTTTGATGGTTGATGA+CGG | - | chr8.3:6020019-6020038 | None:intergenic | 35.0% |
| AAATGTCCACGAAGATAAGC+CGG | - | chr8.3:6018920-6018939 | None:intergenic | 40.0% | |
| AAGGTGGAATCGAATTGTCA+AGG | + | chr8.3:6019918-6019937 | MS.gene061246:CDS | 40.0% | |
| ACAACTACATCACACCATGT+TGG | + | chr8.3:6019403-6019422 | MS.gene061246:CDS | 40.0% | |
| ACGTGTAGTATGCATCTGTT+AGG | + | chr8.3:6019165-6019184 | MS.gene061246:intron | 40.0% | |
| AGCATGACATTTACTTCGAC+TGG | - | chr8.3:6019779-6019798 | None:intergenic | 40.0% | |
| AGTATGCATCTGTTAGGAGT+TGG | + | chr8.3:6019171-6019190 | MS.gene061246:intron | 40.0% | |
| ATCTTGCCATTGAGGACATT+GGG | + | chr8.3:6019375-6019394 | MS.gene061246:CDS | 40.0% | |
| CACGGAAGGACAATATTGTT+TGG | + | chr8.3:6018764-6018783 | MS.gene061246:intron | 40.0% | |
| CATCACCATCCAATTTACCT+TGG | - | chr8.3:6018523-6018542 | None:intergenic | 40.0% | |
| CATCTTCCTCAGAAATGTTG+TGG | - | chr8.3:6018361-6018380 | None:intergenic | 40.0% | |
| CGTCATCAACCATCAAAAAG+AGG | + | chr8.3:6020017-6020036 | MS.gene061246:CDS | 40.0% | |
| CTAAGTGAGGAAGAAGCTTT+CGG | + | chr8.3:6018024-6018043 | MS.gene061246:intron | 40.0% | |
| GAAGTAGGACATAAAGGCAA+GGG | + | chr8.3:6019803-6019822 | MS.gene061246:CDS | 40.0% | |
| GAGAATTATGCCAAAAGGAG+TGG | + | chr8.3:6018054-6018073 | MS.gene061246:intron | 40.0% | |
| GGAACATAACCTTCTTTGTC+CGG | - | chr8.3:6019998-6020017 | None:intergenic | 40.0% | |
| GGGTCCATATATTGAGAATG+TGG | + | chr8.3:6019823-6019842 | MS.gene061246:CDS | 40.0% | |
| GTGTGGTTTATGCATCTGTT+AGG | + | chr8.3:6019237-6019256 | MS.gene061246:intron | 40.0% | |
| TACAACTCAAAGCAATGAGG+TGG | - | chr8.3:6018653-6018672 | None:intergenic | 40.0% | |
| TCCCCTATATGTATCCAACA+TGG | - | chr8.3:6019420-6019439 | None:intergenic | 40.0% | |
| TCGATCATTATCCCCTATAG+AGG | + | chr8.3:6019448-6019467 | MS.gene061246:CDS | 40.0% | |
| TGAAGTAGGACATAAAGGCA+AGG | + | chr8.3:6019802-6019821 | MS.gene061246:CDS | 40.0% | |
| TGGTACAACTCAAAGCAATG+AGG | - | chr8.3:6018656-6018675 | None:intergenic | 40.0% | |
| TTCAAGGTGTGAATGCAAAG+CGG | + | chr8.3:6018211-6018230 | MS.gene061246:intron | 40.0% | |
| ! | GAAGCAAGAGTTTTCATCCT+TGG | - | chr8.3:6018576-6018595 | None:intergenic | 40.0% |
| ! | TTATGGGATGGTGATGTTGT+TGG | + | chr8.3:6019620-6019639 | MS.gene061246:CDS | 40.0% |
| ! | TTTGGGAGTATGACAACAAC+AGG | + | chr8.3:6018941-6018960 | MS.gene061246:intron | 40.0% |
| !! | TTAGGTTGATCTTGCCATTG+AGG | + | chr8.3:6019367-6019386 | MS.gene061246:intron | 40.0% |
| !!! | CGACCTTTTGTTATTGAACG+CGG | - | chr8.3:6019878-6019897 | None:intergenic | 40.0% |
| !!! | GATTTTTTCTGTCACCGAGA+AGG | + | chr8.3:6018134-6018153 | MS.gene061246:intron | 40.0% |
| !!! | GGAGGATAGTTTTGGACAAT+AGG | + | chr8.3:6019139-6019158 | MS.gene061246:intron | 40.0% |
| ACAACTTGTCCGGACAAAGA+AGG | + | chr8.3:6019986-6020005 | MS.gene061246:CDS | 45.0% | |
| CCTCCGCGTTCAATAACAAA+AGG | + | chr8.3:6019872-6019891 | MS.gene061246:CDS | 45.0% | |
| CGTAATGGCAGATACCTTGT+TGG | - | chr8.3:6019731-6019750 | None:intergenic | 45.0% | |
| GATCTTGCCATTGAGGACAT+TGG | + | chr8.3:6019374-6019393 | MS.gene061246:CDS | 45.0% | |
| TCAAGGTGTGAATGCAAAGC+GGG | + | chr8.3:6018212-6018231 | MS.gene061246:intron | 45.0% | |
| TCATCACGACACCAACGTAA+TGG | - | chr8.3:6019746-6019765 | None:intergenic | 45.0% | |
| TGCGTTTAAGAAGTTCCAGG+AGG | + | chr8.3:6019499-6019518 | MS.gene061246:CDS | 45.0% | |
| TTGGAATCGACAATCACGGA+AGG | + | chr8.3:6018750-6018769 | MS.gene061246:intron | 45.0% | |
| TTGTTGCCCAATGTCCTCAA+TGG | - | chr8.3:6019384-6019403 | None:intergenic | 45.0% | |
| ! | AAAGGAGTGGGTTCTCAATC+CGG | + | chr8.3:6018067-6018086 | MS.gene061246:intron | 45.0% |
| ! | CAAGGTATCTGCCATTACGT+TGG | + | chr8.3:6019732-6019751 | MS.gene061246:intron | 45.0% |
| ! | GATTGAGAACCCACTCCTTT+TGG | - | chr8.3:6018067-6018086 | None:intergenic | 45.0% |
| ! | GTTGTACCAAGAGTATGGAG+AGG | + | chr8.3:6018667-6018686 | MS.gene061246:CDS | 45.0% |
| !!! | CCTTTTGTTATTGAACGCGG+AGG | - | chr8.3:6019875-6019894 | None:intergenic | 45.0% |
| !!! | ATTTTTTTATCTAATATTTT+AGG | + | chr8.3:6019349-6019368 | MS.gene061246:intron | 5.0% |
| AGTTCCAGGAGGAGTTTGAG+AGG | + | chr8.3:6019510-6019529 | MS.gene061246:CDS | 50.0% | |
| CAACGACCTCTCCATACTCT+TGG | - | chr8.3:6018676-6018695 | None:intergenic | 50.0% | |
| GTTCCAGGAGGAGTTTGAGA+GGG | + | chr8.3:6019511-6019530 | MS.gene061246:CDS | 50.0% | |
| TGATTTGAGCAACGACGAGC+AGG | + | chr8.3:6017951-6017970 | MS.gene061246:intron | 50.0% | |
| ! | AGTGGGTTCTCAATCCGGAA+AGG | + | chr8.3:6018072-6018091 | MS.gene061246:intron | 50.0% |
| TTGCCCTCTCAAACTCCTCC+TGG | - | chr8.3:6019517-6019536 | None:intergenic | 55.0% | |
| ! | AGGAAGCGCACTTGATCTGG+AGG | - | chr8.3:6018329-6018348 | None:intergenic | 55.0% |
| ! | GCAAGGAAGCGCACTTGATC+TGG | - | chr8.3:6018332-6018351 | None:intergenic | 55.0% |
| !! | TGGGTACCGGCTTATCTTCG+TGG | + | chr8.3:6018911-6018930 | MS.gene061246:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 6017605 | 6020096 | 6017605 | ID=MS.gene061246 |
| chr8.3 | mRNA | 6017605 | 6020096 | 6017605 | ID=MS.gene061246.t1;Parent=MS.gene061246 |
| chr8.3 | exon | 6017605 | 6017657 | 6017605 | ID=MS.gene061246.t1.exon1;Parent=MS.gene061246.t1 |
| chr8.3 | CDS | 6017605 | 6017657 | 6017605 | ID=cds.MS.gene061246.t1;Parent=MS.gene061246.t1 |
| chr8.3 | exon | 6018217 | 6018715 | 6018217 | ID=MS.gene061246.t1.exon2;Parent=MS.gene061246.t1 |
| chr8.3 | CDS | 6018217 | 6018715 | 6018217 | ID=cds.MS.gene061246.t1;Parent=MS.gene061246.t1 |
| chr8.3 | exon | 6019371 | 6019650 | 6019371 | ID=MS.gene061246.t1.exon3;Parent=MS.gene061246.t1 |
| chr8.3 | CDS | 6019371 | 6019650 | 6019371 | ID=cds.MS.gene061246.t1;Parent=MS.gene061246.t1 |
| chr8.3 | exon | 6019780 | 6020096 | 6019780 | ID=MS.gene061246.t1.exon4;Parent=MS.gene061246.t1 |
| chr8.3 | CDS | 6019780 | 6020096 | 6019780 | ID=cds.MS.gene061246.t1;Parent=MS.gene061246.t1 |
| Gene Sequence |
| Protein sequence |
